data_4CHE # _entry.id 4CHE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.308 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4CHE PDBE EBI-59131 WWPDB D_1290059131 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 4CGS unspecified 'CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF THE PA SUBUNIT OF DHORI VIRUS POLYMERASE' PDB 4CGX unspecified 'CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF THE PA SUBUNIT OF THOGOTO VIRUS POLYMERASE (FORM 1)' PDB 4CHC unspecified 'CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF THE PA SUBUNIT OF THOGOTO VIRUS POLYMERASE (FORM 2)' PDB 4CHD unspecified ;CRYSTAL STRUCTURE OF THE '627' DOMAIN OF THE PB2 SUBUNIT OF THOGOTO VIRUS POLYMERASE ; PDB 4CHF unspecified 'CRYSTAL STRUCTURE OF THE PUTATIVE CAP-BINDING DOMAIN OF THE PB2 SUBUNIT OF THOGOTO VIRUS POLYMERASE (FORM 2)' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4CHE _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2013-12-01 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Guilligay, D.' 1 'Kadlec, J.' 2 'Crepin, T.' 3 'Lunardi, T.' 4 'Bouvier, D.' 5 'Kochs, G.' 6 'Ruigrok, R.W.H.' 7 'Cusack, S.' 8 # _citation.id primary _citation.title 'Comparative Structural and Functional Analysis of Orthomyxovirus Polymerase CAP-Snatching Domains.' _citation.journal_abbrev 'Plos One' _citation.journal_volume 9 _citation.page_first 84973 _citation.page_last ? _citation.year 2014 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1932-6203 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24454773 _citation.pdbx_database_id_DOI 10.1371/JOURNAL.PONE.0084973 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Guilligay, D.' 1 ? primary 'Kadlec, J.' 2 ? primary 'Crepin, T.' 3 ? primary 'Lunardi, T.' 4 ? primary 'Bouvier, D.' 5 ? primary 'Kochs, G.' 6 ? primary 'Ruigrok, R.W.H.' 7 ? primary 'Cusack, S.' 8 ? # _cell.entry_id 4CHE _cell.length_a 109.620 _cell.length_b 109.620 _cell.length_c 39.060 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CHE _symmetry.space_group_name_H-M 'I 4' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'POLYMERASE BASIC PROTEIN 2' 19318.199 1 ? ? 'PUTATIVE CAP-BINDING DOMAIN, RESIDUES 323-486' ? 2 water nat water 18.015 188 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'RNA-DIRECTED RNA POLYMERASE SUBUNIT P3' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GAMASTHHTMKIRSTKFSILNSDHPRIEVKKVFSLSPDVQVTIPYRRFKGKAKVYFQNDQIQGYFSCTDRQIDEIKISAP KNAPLLEPLLDICYYGSFIEPGFEQTFGFYPAGKREFVDSFFMHHSKDHKAFLIHMGLDKDLSLPLSPELNWKEPALSKV CRVTELDS ; _entity_poly.pdbx_seq_one_letter_code_can ;GAMASTHHTMKIRSTKFSILNSDHPRIEVKKVFSLSPDVQVTIPYRRFKGKAKVYFQNDQIQGYFSCTDRQIDEIKISAP KNAPLLEPLLDICYYGSFIEPGFEQTFGFYPAGKREFVDSFFMHHSKDHKAFLIHMGLDKDLSLPLSPELNWKEPALSKV CRVTELDS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 MET n 1 4 ALA n 1 5 SER n 1 6 THR n 1 7 HIS n 1 8 HIS n 1 9 THR n 1 10 MET n 1 11 LYS n 1 12 ILE n 1 13 ARG n 1 14 SER n 1 15 THR n 1 16 LYS n 1 17 PHE n 1 18 SER n 1 19 ILE n 1 20 LEU n 1 21 ASN n 1 22 SER n 1 23 ASP n 1 24 HIS n 1 25 PRO n 1 26 ARG n 1 27 ILE n 1 28 GLU n 1 29 VAL n 1 30 LYS n 1 31 LYS n 1 32 VAL n 1 33 PHE n 1 34 SER n 1 35 LEU n 1 36 SER n 1 37 PRO n 1 38 ASP n 1 39 VAL n 1 40 GLN n 1 41 VAL n 1 42 THR n 1 43 ILE n 1 44 PRO n 1 45 TYR n 1 46 ARG n 1 47 ARG n 1 48 PHE n 1 49 LYS n 1 50 GLY n 1 51 LYS n 1 52 ALA n 1 53 LYS n 1 54 VAL n 1 55 TYR n 1 56 PHE n 1 57 GLN n 1 58 ASN n 1 59 ASP n 1 60 GLN n 1 61 ILE n 1 62 GLN n 1 63 GLY n 1 64 TYR n 1 65 PHE n 1 66 SER n 1 67 CYS n 1 68 THR n 1 69 ASP n 1 70 ARG n 1 71 GLN n 1 72 ILE n 1 73 ASP n 1 74 GLU n 1 75 ILE n 1 76 LYS n 1 77 ILE n 1 78 SER n 1 79 ALA n 1 80 PRO n 1 81 LYS n 1 82 ASN n 1 83 ALA n 1 84 PRO n 1 85 LEU n 1 86 LEU n 1 87 GLU n 1 88 PRO n 1 89 LEU n 1 90 LEU n 1 91 ASP n 1 92 ILE n 1 93 CYS n 1 94 TYR n 1 95 TYR n 1 96 GLY n 1 97 SER n 1 98 PHE n 1 99 ILE n 1 100 GLU n 1 101 PRO n 1 102 GLY n 1 103 PHE n 1 104 GLU n 1 105 GLN n 1 106 THR n 1 107 PHE n 1 108 GLY n 1 109 PHE n 1 110 TYR n 1 111 PRO n 1 112 ALA n 1 113 GLY n 1 114 LYS n 1 115 ARG n 1 116 GLU n 1 117 PHE n 1 118 VAL n 1 119 ASP n 1 120 SER n 1 121 PHE n 1 122 PHE n 1 123 MET n 1 124 HIS n 1 125 HIS n 1 126 SER n 1 127 LYS n 1 128 ASP n 1 129 HIS n 1 130 LYS n 1 131 ALA n 1 132 PHE n 1 133 LEU n 1 134 ILE n 1 135 HIS n 1 136 MET n 1 137 GLY n 1 138 LEU n 1 139 ASP n 1 140 LYS n 1 141 ASP n 1 142 LEU n 1 143 SER n 1 144 LEU n 1 145 PRO n 1 146 LEU n 1 147 SER n 1 148 PRO n 1 149 GLU n 1 150 LEU n 1 151 ASN n 1 152 TRP n 1 153 LYS n 1 154 GLU n 1 155 PRO n 1 156 ALA n 1 157 LEU n 1 158 SER n 1 159 LYS n 1 160 VAL n 1 161 CYS n 1 162 ARG n 1 163 VAL n 1 164 THR n 1 165 GLU n 1 166 LEU n 1 167 ASP n 1 168 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'THOGOTO VIRUS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 11569 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant 'CODON PLUS-RIL' _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector PPROEXHTB _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PB2_THOGV _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession Q9YNA4 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4CHE _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 5 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 168 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9YNA4 _struct_ref_seq.db_align_beg 323 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 486 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 323 _struct_ref_seq.pdbx_auth_seq_align_end 486 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4CHE GLY A 1 ? UNP Q9YNA4 ? ? 'expression tag' 319 1 1 4CHE ALA A 2 ? UNP Q9YNA4 ? ? 'expression tag' 320 2 1 4CHE MET A 3 ? UNP Q9YNA4 ? ? 'expression tag' 321 3 1 4CHE ALA A 4 ? UNP Q9YNA4 ? ? 'expression tag' 322 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4CHE _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.1 _exptl_crystal.density_percent_sol 60.4 _exptl_crystal.description 'SELENOMETHIONINE SAD' # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;THE PROTEIN WAS CONCENTRATED TO 9 MG/ML IN A BUFFER CONTAINING 20 MM TRIS PH 7.0, 200 MM NACL AND 5 MM BETA-MERCAPTOETHANOL. THE BEST-DIFFRACTING CRYSTALS GREW WITHIN 2 DAYS AT 20 C IN A SOLUTION CONTAINING 100 MM BIS-TRIS PH 6.0, 100 MM MGCL2 AND 22 % PEG3350. ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2008-02-20 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.8726 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID23-2' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID23-2 _diffrn_source.pdbx_wavelength 0.8726 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4CHE _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.00 _reflns.d_resolution_high 1.80 _reflns.number_obs 21746 _reflns.number_all ? _reflns.percent_possible_obs 99.7 _reflns.pdbx_Rmerge_I_obs 0.06 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 16.50 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.2 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.80 _reflns_shell.d_res_low 1.85 _reflns_shell.percent_possible_all 99.6 _reflns_shell.Rmerge_I_obs 0.64 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.40 _reflns_shell.pdbx_redundancy 3.7 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4CHE _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 20631 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 77.62 _refine.ls_d_res_high 1.80 _refine.ls_percent_reflns_obs 99.67 _refine.ls_R_factor_obs 0.17268 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.17161 _refine.ls_R_factor_R_free 0.19215 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1115 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.966 _refine.correlation_coeff_Fo_to_Fc_free 0.961 _refine.B_iso_mean 25.115 _refine.aniso_B[1][1] -0.65 _refine.aniso_B[2][2] -0.65 _refine.aniso_B[3][3] 1.29 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES REFINED INDIVIDUALLY' _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.101 _refine.pdbx_overall_ESU_R_Free 0.095 _refine.overall_SU_ML 0.064 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 2.049 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1305 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 188 _refine_hist.number_atoms_total 1493 _refine_hist.d_res_high 1.80 _refine_hist.d_res_low 77.62 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.007 0.020 ? 1346 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 960 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.204 1.967 ? 1818 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.803 3.000 ? 2337 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.861 5.000 ? 160 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 29.395 23.548 ? 62 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 10.836 15.000 ? 240 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 16.232 15.000 ? 7 'X-RAY DIFFRACTION' ? r_chiral_restr 0.081 0.200 ? 192 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.021 ? 1469 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 286 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.800 _refine_ls_shell.d_res_low 1.847 _refine_ls_shell.number_reflns_R_work 1451 _refine_ls_shell.R_factor_R_work 0.256 _refine_ls_shell.percent_reflns_obs 99.48 _refine_ls_shell.R_factor_R_free 0.332 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 68 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 4CHE _struct.title 'Crystal structure of the putative cap-binding domain of the PB2 subunit of Thogoto virus polymerase' _struct.pdbx_descriptor 'POLYMERASE BASIC PROTEIN 2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4CHE _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' _struct_keywords.text 'VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU A 85 ? SER A 97 ? LEU A 403 SER A 415 1 ? 13 HELX_P HELX_P2 2 GLY A 113 ? ASP A 128 ? GLY A 431 ASP A 446 1 ? 16 HELX_P HELX_P3 3 HIS A 129 ? GLY A 137 ? HIS A 447 GLY A 455 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLU _struct_mon_prot_cis.label_seq_id 100 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLU _struct_mon_prot_cis.auth_seq_id 418 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 101 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 419 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 1.11 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 6 ? AB ? 2 ? AC ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel AA 4 5 ? anti-parallel AA 5 6 ? parallel AB 1 2 ? anti-parallel AC 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 MET A 10 ? ILE A 12 ? MET A 328 ILE A 330 AA 2 THR A 15 ? SER A 22 ? THR A 333 SER A 340 AA 3 LYS A 51 ? ASN A 58 ? LYS A 369 ASN A 376 AA 4 ILE A 61 ? THR A 68 ? ILE A 379 THR A 386 AA 5 GLN A 71 ? SER A 78 ? GLN A 389 SER A 396 AA 6 VAL A 163 ? GLU A 165 ? VAL A 481 GLU A 483 AB 1 ILE A 27 ? SER A 36 ? ILE A 345 SER A 354 AB 2 VAL A 39 ? ARG A 47 ? VAL A 357 ARG A 365 AC 1 LEU A 138 ? ASP A 139 ? LEU A 456 ASP A 457 AC 2 LYS A 159 ? VAL A 160 ? LYS A 477 VAL A 478 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N ILE A 12 ? N ILE A 330 O THR A 15 ? O THR A 333 AA 2 3 N LEU A 20 ? N LEU A 338 O LYS A 53 ? O LYS A 371 AA 3 4 N ASN A 58 ? N ASN A 376 O ILE A 61 ? O ILE A 379 AA 4 5 N THR A 68 ? N THR A 386 O GLN A 71 ? O GLN A 389 AA 5 6 N ILE A 77 ? N ILE A 395 O THR A 164 ? O THR A 482 AB 1 2 N LEU A 35 ? N LEU A 353 O VAL A 39 ? O VAL A 357 AC 1 2 N ASP A 139 ? N ASP A 457 O LYS A 159 ? O LYS A 477 # _database_PDB_matrix.entry_id 4CHE _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4CHE _atom_sites.fract_transf_matrix[1][1] 0.009122 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009122 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.025602 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 319 ? ? ? A . n A 1 2 ALA 2 320 ? ? ? A . n A 1 3 MET 3 321 ? ? ? A . n A 1 4 ALA 4 322 ? ? ? A . n A 1 5 SER 5 323 ? ? ? A . n A 1 6 THR 6 324 ? ? ? A . n A 1 7 HIS 7 325 ? ? ? A . n A 1 8 HIS 8 326 326 HIS HIS A . n A 1 9 THR 9 327 327 THR THR A . n A 1 10 MET 10 328 328 MET MET A . n A 1 11 LYS 11 329 329 LYS LYS A . n A 1 12 ILE 12 330 330 ILE ILE A . n A 1 13 ARG 13 331 331 ARG ARG A . n A 1 14 SER 14 332 332 SER SER A . n A 1 15 THR 15 333 333 THR THR A . n A 1 16 LYS 16 334 334 LYS LYS A . n A 1 17 PHE 17 335 335 PHE PHE A . n A 1 18 SER 18 336 336 SER SER A . n A 1 19 ILE 19 337 337 ILE ILE A . n A 1 20 LEU 20 338 338 LEU LEU A . n A 1 21 ASN 21 339 339 ASN ASN A . n A 1 22 SER 22 340 340 SER SER A . n A 1 23 ASP 23 341 341 ASP ASP A . n A 1 24 HIS 24 342 342 HIS HIS A . n A 1 25 PRO 25 343 343 PRO PRO A . n A 1 26 ARG 26 344 344 ARG ARG A . n A 1 27 ILE 27 345 345 ILE ILE A . n A 1 28 GLU 28 346 346 GLU GLU A . n A 1 29 VAL 29 347 347 VAL VAL A . n A 1 30 LYS 30 348 348 LYS LYS A . n A 1 31 LYS 31 349 349 LYS LYS A . n A 1 32 VAL 32 350 350 VAL VAL A . n A 1 33 PHE 33 351 351 PHE PHE A . n A 1 34 SER 34 352 352 SER SER A . n A 1 35 LEU 35 353 353 LEU LEU A . n A 1 36 SER 36 354 354 SER SER A . n A 1 37 PRO 37 355 355 PRO PRO A . n A 1 38 ASP 38 356 356 ASP ASP A . n A 1 39 VAL 39 357 357 VAL VAL A . n A 1 40 GLN 40 358 358 GLN GLN A . n A 1 41 VAL 41 359 359 VAL VAL A . n A 1 42 THR 42 360 360 THR THR A . n A 1 43 ILE 43 361 361 ILE ILE A . n A 1 44 PRO 44 362 362 PRO PRO A . n A 1 45 TYR 45 363 363 TYR TYR A . n A 1 46 ARG 46 364 364 ARG ARG A . n A 1 47 ARG 47 365 365 ARG ARG A . n A 1 48 PHE 48 366 366 PHE PHE A . n A 1 49 LYS 49 367 367 LYS LYS A . n A 1 50 GLY 50 368 368 GLY GLY A . n A 1 51 LYS 51 369 369 LYS LYS A . n A 1 52 ALA 52 370 370 ALA ALA A . n A 1 53 LYS 53 371 371 LYS LYS A . n A 1 54 VAL 54 372 372 VAL VAL A . n A 1 55 TYR 55 373 373 TYR TYR A . n A 1 56 PHE 56 374 374 PHE PHE A . n A 1 57 GLN 57 375 375 GLN GLN A . n A 1 58 ASN 58 376 376 ASN ASN A . n A 1 59 ASP 59 377 377 ASP ASP A . n A 1 60 GLN 60 378 378 GLN GLN A . n A 1 61 ILE 61 379 379 ILE ILE A . n A 1 62 GLN 62 380 380 GLN GLN A . n A 1 63 GLY 63 381 381 GLY GLY A . n A 1 64 TYR 64 382 382 TYR TYR A . n A 1 65 PHE 65 383 383 PHE PHE A . n A 1 66 SER 66 384 384 SER SER A . n A 1 67 CYS 67 385 385 CYS CYS A . n A 1 68 THR 68 386 386 THR THR A . n A 1 69 ASP 69 387 387 ASP ASP A . n A 1 70 ARG 70 388 388 ARG ARG A . n A 1 71 GLN 71 389 389 GLN GLN A . n A 1 72 ILE 72 390 390 ILE ILE A . n A 1 73 ASP 73 391 391 ASP ASP A . n A 1 74 GLU 74 392 392 GLU GLU A . n A 1 75 ILE 75 393 393 ILE ILE A . n A 1 76 LYS 76 394 394 LYS LYS A . n A 1 77 ILE 77 395 395 ILE ILE A . n A 1 78 SER 78 396 396 SER SER A . n A 1 79 ALA 79 397 397 ALA ALA A . n A 1 80 PRO 80 398 398 PRO PRO A . n A 1 81 LYS 81 399 399 LYS LYS A . n A 1 82 ASN 82 400 400 ASN ASN A . n A 1 83 ALA 83 401 401 ALA ALA A . n A 1 84 PRO 84 402 402 PRO PRO A . n A 1 85 LEU 85 403 403 LEU LEU A . n A 1 86 LEU 86 404 404 LEU LEU A . n A 1 87 GLU 87 405 405 GLU GLU A . n A 1 88 PRO 88 406 406 PRO PRO A . n A 1 89 LEU 89 407 407 LEU LEU A . n A 1 90 LEU 90 408 408 LEU LEU A . n A 1 91 ASP 91 409 409 ASP ASP A . n A 1 92 ILE 92 410 410 ILE ILE A . n A 1 93 CYS 93 411 411 CYS CYS A . n A 1 94 TYR 94 412 412 TYR TYR A . n A 1 95 TYR 95 413 413 TYR TYR A . n A 1 96 GLY 96 414 414 GLY GLY A . n A 1 97 SER 97 415 415 SER SER A . n A 1 98 PHE 98 416 416 PHE PHE A . n A 1 99 ILE 99 417 417 ILE ILE A . n A 1 100 GLU 100 418 418 GLU GLU A . n A 1 101 PRO 101 419 419 PRO PRO A . n A 1 102 GLY 102 420 420 GLY GLY A . n A 1 103 PHE 103 421 421 PHE PHE A . n A 1 104 GLU 104 422 422 GLU GLU A . n A 1 105 GLN 105 423 423 GLN GLN A . n A 1 106 THR 106 424 424 THR THR A . n A 1 107 PHE 107 425 425 PHE PHE A . n A 1 108 GLY 108 426 426 GLY GLY A . n A 1 109 PHE 109 427 427 PHE PHE A . n A 1 110 TYR 110 428 428 TYR TYR A . n A 1 111 PRO 111 429 429 PRO PRO A . n A 1 112 ALA 112 430 430 ALA ALA A . n A 1 113 GLY 113 431 431 GLY GLY A . n A 1 114 LYS 114 432 432 LYS LYS A . n A 1 115 ARG 115 433 433 ARG ARG A . n A 1 116 GLU 116 434 434 GLU GLU A . n A 1 117 PHE 117 435 435 PHE PHE A . n A 1 118 VAL 118 436 436 VAL VAL A . n A 1 119 ASP 119 437 437 ASP ASP A . n A 1 120 SER 120 438 438 SER SER A . n A 1 121 PHE 121 439 439 PHE PHE A . n A 1 122 PHE 122 440 440 PHE PHE A . n A 1 123 MET 123 441 441 MET MET A . n A 1 124 HIS 124 442 442 HIS HIS A . n A 1 125 HIS 125 443 443 HIS HIS A . n A 1 126 SER 126 444 444 SER SER A . n A 1 127 LYS 127 445 445 LYS LYS A . n A 1 128 ASP 128 446 446 ASP ASP A . n A 1 129 HIS 129 447 447 HIS HIS A . n A 1 130 LYS 130 448 448 LYS LYS A . n A 1 131 ALA 131 449 449 ALA ALA A . n A 1 132 PHE 132 450 450 PHE PHE A . n A 1 133 LEU 133 451 451 LEU LEU A . n A 1 134 ILE 134 452 452 ILE ILE A . n A 1 135 HIS 135 453 453 HIS HIS A . n A 1 136 MET 136 454 454 MET MET A . n A 1 137 GLY 137 455 455 GLY GLY A . n A 1 138 LEU 138 456 456 LEU LEU A . n A 1 139 ASP 139 457 457 ASP ASP A . n A 1 140 LYS 140 458 458 LYS LYS A . n A 1 141 ASP 141 459 459 ASP ASP A . n A 1 142 LEU 142 460 460 LEU LEU A . n A 1 143 SER 143 461 461 SER SER A . n A 1 144 LEU 144 462 462 LEU LEU A . n A 1 145 PRO 145 463 463 PRO PRO A . n A 1 146 LEU 146 464 464 LEU LEU A . n A 1 147 SER 147 465 465 SER SER A . n A 1 148 PRO 148 466 466 PRO PRO A . n A 1 149 GLU 149 467 467 GLU GLU A . n A 1 150 LEU 150 468 468 LEU LEU A . n A 1 151 ASN 151 469 469 ASN ASN A . n A 1 152 TRP 152 470 470 TRP TRP A . n A 1 153 LYS 153 471 471 LYS LYS A . n A 1 154 GLU 154 472 472 GLU GLU A . n A 1 155 PRO 155 473 473 PRO PRO A . n A 1 156 ALA 156 474 474 ALA ALA A . n A 1 157 LEU 157 475 475 LEU LEU A . n A 1 158 SER 158 476 476 SER SER A . n A 1 159 LYS 159 477 477 LYS LYS A . n A 1 160 VAL 160 478 478 VAL VAL A . n A 1 161 CYS 161 479 479 CYS CYS A . n A 1 162 ARG 162 480 480 ARG ARG A . n A 1 163 VAL 163 481 481 VAL VAL A . n A 1 164 THR 164 482 482 THR THR A . n A 1 165 GLU 165 483 483 GLU GLU A . n A 1 166 LEU 166 484 484 LEU LEU A . n A 1 167 ASP 167 485 485 ASP ASP A . n A 1 168 SER 168 486 486 SER SER A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 2001 2001 HOH HOH A . B 2 HOH 2 2002 2002 HOH HOH A . B 2 HOH 3 2003 2003 HOH HOH A . B 2 HOH 4 2004 2004 HOH HOH A . B 2 HOH 5 2005 2005 HOH HOH A . B 2 HOH 6 2006 2006 HOH HOH A . B 2 HOH 7 2007 2007 HOH HOH A . B 2 HOH 8 2008 2008 HOH HOH A . B 2 HOH 9 2009 2009 HOH HOH A . B 2 HOH 10 2010 2010 HOH HOH A . B 2 HOH 11 2011 2011 HOH HOH A . B 2 HOH 12 2012 2012 HOH HOH A . B 2 HOH 13 2013 2013 HOH HOH A . B 2 HOH 14 2014 2014 HOH HOH A . B 2 HOH 15 2015 2015 HOH HOH A . B 2 HOH 16 2016 2016 HOH HOH A . B 2 HOH 17 2017 2017 HOH HOH A . B 2 HOH 18 2018 2018 HOH HOH A . B 2 HOH 19 2019 2019 HOH HOH A . B 2 HOH 20 2020 2020 HOH HOH A . B 2 HOH 21 2021 2021 HOH HOH A . B 2 HOH 22 2022 2022 HOH HOH A . B 2 HOH 23 2023 2023 HOH HOH A . B 2 HOH 24 2024 2024 HOH HOH A . B 2 HOH 25 2025 2025 HOH HOH A . B 2 HOH 26 2026 2026 HOH HOH A . B 2 HOH 27 2027 2027 HOH HOH A . B 2 HOH 28 2028 2028 HOH HOH A . B 2 HOH 29 2029 2029 HOH HOH A . B 2 HOH 30 2030 2030 HOH HOH A . B 2 HOH 31 2031 2031 HOH HOH A . B 2 HOH 32 2032 2032 HOH HOH A . B 2 HOH 33 2033 2033 HOH HOH A . B 2 HOH 34 2034 2034 HOH HOH A . B 2 HOH 35 2035 2035 HOH HOH A . B 2 HOH 36 2036 2036 HOH HOH A . B 2 HOH 37 2037 2037 HOH HOH A . B 2 HOH 38 2038 2038 HOH HOH A . B 2 HOH 39 2039 2039 HOH HOH A . B 2 HOH 40 2040 2040 HOH HOH A . B 2 HOH 41 2041 2041 HOH HOH A . B 2 HOH 42 2042 2042 HOH HOH A . B 2 HOH 43 2043 2043 HOH HOH A . B 2 HOH 44 2044 2044 HOH HOH A . B 2 HOH 45 2045 2045 HOH HOH A . B 2 HOH 46 2046 2046 HOH HOH A . B 2 HOH 47 2047 2047 HOH HOH A . B 2 HOH 48 2048 2048 HOH HOH A . B 2 HOH 49 2049 2049 HOH HOH A . B 2 HOH 50 2050 2050 HOH HOH A . B 2 HOH 51 2051 2051 HOH HOH A . B 2 HOH 52 2052 2052 HOH HOH A . B 2 HOH 53 2053 2053 HOH HOH A . B 2 HOH 54 2054 2054 HOH HOH A . B 2 HOH 55 2055 2055 HOH HOH A . B 2 HOH 56 2056 2056 HOH HOH A . B 2 HOH 57 2057 2057 HOH HOH A . B 2 HOH 58 2058 2058 HOH HOH A . B 2 HOH 59 2059 2059 HOH HOH A . B 2 HOH 60 2060 2060 HOH HOH A . B 2 HOH 61 2061 2061 HOH HOH A . B 2 HOH 62 2062 2062 HOH HOH A . B 2 HOH 63 2063 2063 HOH HOH A . B 2 HOH 64 2064 2064 HOH HOH A . B 2 HOH 65 2065 2065 HOH HOH A . B 2 HOH 66 2066 2066 HOH HOH A . B 2 HOH 67 2067 2067 HOH HOH A . B 2 HOH 68 2068 2068 HOH HOH A . B 2 HOH 69 2069 2069 HOH HOH A . B 2 HOH 70 2070 2070 HOH HOH A . B 2 HOH 71 2071 2071 HOH HOH A . B 2 HOH 72 2072 2072 HOH HOH A . B 2 HOH 73 2073 2073 HOH HOH A . B 2 HOH 74 2074 2074 HOH HOH A . B 2 HOH 75 2075 2075 HOH HOH A . B 2 HOH 76 2076 2076 HOH HOH A . B 2 HOH 77 2077 2077 HOH HOH A . B 2 HOH 78 2078 2078 HOH HOH A . B 2 HOH 79 2079 2079 HOH HOH A . B 2 HOH 80 2080 2080 HOH HOH A . B 2 HOH 81 2081 2081 HOH HOH A . B 2 HOH 82 2082 2082 HOH HOH A . B 2 HOH 83 2083 2083 HOH HOH A . B 2 HOH 84 2084 2084 HOH HOH A . B 2 HOH 85 2085 2085 HOH HOH A . B 2 HOH 86 2086 2086 HOH HOH A . B 2 HOH 87 2087 2087 HOH HOH A . B 2 HOH 88 2088 2088 HOH HOH A . B 2 HOH 89 2089 2089 HOH HOH A . B 2 HOH 90 2090 2090 HOH HOH A . B 2 HOH 91 2091 2091 HOH HOH A . B 2 HOH 92 2092 2092 HOH HOH A . B 2 HOH 93 2093 2093 HOH HOH A . B 2 HOH 94 2094 2094 HOH HOH A . B 2 HOH 95 2095 2095 HOH HOH A . B 2 HOH 96 2096 2096 HOH HOH A . B 2 HOH 97 2097 2097 HOH HOH A . B 2 HOH 98 2098 2098 HOH HOH A . B 2 HOH 99 2099 2099 HOH HOH A . B 2 HOH 100 2100 2100 HOH HOH A . B 2 HOH 101 2101 2101 HOH HOH A . B 2 HOH 102 2102 2102 HOH HOH A . B 2 HOH 103 2103 2103 HOH HOH A . B 2 HOH 104 2104 2104 HOH HOH A . B 2 HOH 105 2105 2105 HOH HOH A . B 2 HOH 106 2106 2106 HOH HOH A . B 2 HOH 107 2107 2107 HOH HOH A . B 2 HOH 108 2108 2108 HOH HOH A . B 2 HOH 109 2109 2109 HOH HOH A . B 2 HOH 110 2110 2110 HOH HOH A . B 2 HOH 111 2111 2111 HOH HOH A . B 2 HOH 112 2112 2112 HOH HOH A . B 2 HOH 113 2113 2113 HOH HOH A . B 2 HOH 114 2114 2114 HOH HOH A . B 2 HOH 115 2115 2115 HOH HOH A . B 2 HOH 116 2116 2116 HOH HOH A . B 2 HOH 117 2117 2117 HOH HOH A . B 2 HOH 118 2118 2118 HOH HOH A . B 2 HOH 119 2119 2119 HOH HOH A . B 2 HOH 120 2120 2120 HOH HOH A . B 2 HOH 121 2121 2121 HOH HOH A . B 2 HOH 122 2122 2122 HOH HOH A . B 2 HOH 123 2123 2123 HOH HOH A . B 2 HOH 124 2124 2124 HOH HOH A . B 2 HOH 125 2125 2125 HOH HOH A . B 2 HOH 126 2126 2126 HOH HOH A . B 2 HOH 127 2127 2127 HOH HOH A . B 2 HOH 128 2128 2128 HOH HOH A . B 2 HOH 129 2129 2129 HOH HOH A . B 2 HOH 130 2130 2130 HOH HOH A . B 2 HOH 131 2131 2131 HOH HOH A . B 2 HOH 132 2132 2132 HOH HOH A . B 2 HOH 133 2133 2133 HOH HOH A . B 2 HOH 134 2134 2134 HOH HOH A . B 2 HOH 135 2135 2135 HOH HOH A . B 2 HOH 136 2136 2136 HOH HOH A . B 2 HOH 137 2137 2137 HOH HOH A . B 2 HOH 138 2138 2138 HOH HOH A . B 2 HOH 139 2139 2139 HOH HOH A . B 2 HOH 140 2140 2140 HOH HOH A . B 2 HOH 141 2141 2141 HOH HOH A . B 2 HOH 142 2142 2142 HOH HOH A . B 2 HOH 143 2143 2143 HOH HOH A . B 2 HOH 144 2144 2144 HOH HOH A . B 2 HOH 145 2145 2145 HOH HOH A . B 2 HOH 146 2146 2146 HOH HOH A . B 2 HOH 147 2147 2147 HOH HOH A . B 2 HOH 148 2148 2148 HOH HOH A . B 2 HOH 149 2149 2149 HOH HOH A . B 2 HOH 150 2150 2150 HOH HOH A . B 2 HOH 151 2151 2151 HOH HOH A . B 2 HOH 152 2152 2152 HOH HOH A . B 2 HOH 153 2153 2153 HOH HOH A . B 2 HOH 154 2154 2154 HOH HOH A . B 2 HOH 155 2155 2155 HOH HOH A . B 2 HOH 156 2156 2156 HOH HOH A . B 2 HOH 157 2157 2157 HOH HOH A . B 2 HOH 158 2158 2158 HOH HOH A . B 2 HOH 159 2159 2159 HOH HOH A . B 2 HOH 160 2160 2160 HOH HOH A . B 2 HOH 161 2161 2161 HOH HOH A . B 2 HOH 162 2162 2162 HOH HOH A . B 2 HOH 163 2163 2163 HOH HOH A . B 2 HOH 164 2164 2164 HOH HOH A . B 2 HOH 165 2165 2165 HOH HOH A . B 2 HOH 166 2166 2166 HOH HOH A . B 2 HOH 167 2167 2167 HOH HOH A . B 2 HOH 168 2168 2168 HOH HOH A . B 2 HOH 169 2169 2169 HOH HOH A . B 2 HOH 170 2170 2170 HOH HOH A . B 2 HOH 171 2171 2171 HOH HOH A . B 2 HOH 172 2172 2172 HOH HOH A . B 2 HOH 173 2173 2173 HOH HOH A . B 2 HOH 174 2174 2174 HOH HOH A . B 2 HOH 175 2175 2175 HOH HOH A . B 2 HOH 176 2176 2176 HOH HOH A . B 2 HOH 177 2177 2177 HOH HOH A . B 2 HOH 178 2178 2178 HOH HOH A . B 2 HOH 179 2179 2179 HOH HOH A . B 2 HOH 180 2180 2180 HOH HOH A . B 2 HOH 181 2181 2181 HOH HOH A . B 2 HOH 182 2182 2182 HOH HOH A . B 2 HOH 183 2183 2183 HOH HOH A . B 2 HOH 184 2184 2184 HOH HOH A . B 2 HOH 185 2185 2185 HOH HOH A . B 2 HOH 186 2186 2186 HOH HOH A . B 2 HOH 187 2187 2187 HOH HOH A . B 2 HOH 188 2188 2188 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-02-05 2 'Structure model' 1 1 2019-05-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Experimental preparation' 3 2 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' exptl_crystal_grow 2 2 'Structure model' pdbx_database_proc 3 2 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_exptl_crystal_grow.temp' 2 2 'Structure model' '_pdbx_database_status.recvd_author_approval' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.6.0116 ? 1 XDS 'data reduction' . ? 2 XSCALE 'data scaling' . ? 3 autoSHARP phasing . ? 4 # _pdbx_entry_details.entry_id 4CHE _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'EXTRA GAMA AT N-TERMINUS AFTER HIS-TAG CLEAVAGE' # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 GLN _pdbx_validate_symm_contact.auth_seq_id_1 358 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 NZ _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 LYS _pdbx_validate_symm_contact.auth_seq_id_2 448 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 6_555 _pdbx_validate_symm_contact.dist 2.14 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 331 ? ? 50.60 -122.74 2 1 ARG A 331 ? ? 50.65 -122.74 3 1 ASP A 377 ? ? 52.77 -108.33 4 1 ASP A 387 ? ? 52.34 -123.69 5 1 PHE A 421 ? ? -133.64 -72.60 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 2001 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.09 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A HIS 326 ? CG ? A HIS 8 CG 2 1 Y 1 A HIS 326 ? ND1 ? A HIS 8 ND1 3 1 Y 1 A HIS 326 ? CD2 ? A HIS 8 CD2 4 1 Y 1 A HIS 326 ? CE1 ? A HIS 8 CE1 5 1 Y 1 A HIS 326 ? NE2 ? A HIS 8 NE2 6 1 Y 1 A SER 486 ? CA ? A SER 168 CA 7 1 Y 1 A SER 486 ? C ? A SER 168 C 8 1 Y 1 A SER 486 ? O ? A SER 168 O 9 1 Y 1 A SER 486 ? CB ? A SER 168 CB 10 1 Y 1 A SER 486 ? OG ? A SER 168 OG # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 319 ? A GLY 1 2 1 Y 1 A ALA 320 ? A ALA 2 3 1 Y 1 A MET 321 ? A MET 3 4 1 Y 1 A ALA 322 ? A ALA 4 5 1 Y 1 A SER 323 ? A SER 5 6 1 Y 1 A THR 324 ? A THR 6 7 1 Y 1 A HIS 325 ? A HIS 7 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #