HEADER VIRAL PROTEIN 01-DEC-13 4CHF TITLE CRYSTAL STRUCTURE OF THE PUTATIVE CAP-BINDING DOMAIN OF THE TITLE 2 PB2 SUBUNIT OF THOGOTO VIRUS POLYMERASE (FORM 2) COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE BASIC PROTEIN 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PUTATIVE CAP-BINDING DOMAIN, RESIDUES 323-486; COMPND 5 SYNONYM: RNA-DIRECTED RNA POLYMERASE SUBUNIT P3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THOGOTO VIRUS; SOURCE 3 ORGANISM_TAXID: 11569; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VARIANT: CODON PLUS-RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PPROEXHTB KEYWDS VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.GUILLIGAY,J.KADLEC,T.CREPIN,T.LUNARDI,D.BOUVIER,G.KOCHS, AUTHOR 2 R.W.H.RUIGROK,S.CUSACK REVDAT 1 05-FEB-14 4CHF 0 JRNL AUTH D.GUILLIGAY,J.KADLEC,T.CREPIN,T.LUNARDI,D.BOUVIER,G.KOCHS, JRNL AUTH 2 R.W.H.RUIGROK,S.CUSACK JRNL TITL COMPARATIVE STRUCTURAL AND FUNCTIONAL ANALYSIS OF JRNL TITL 2 ORTHOMYXOVIRUS POLYMERASE CAP-SNATCHING DOMAINS. JRNL REF PLOS ONE V. 9 84973 2014 JRNL REFN ISSN 1932-6203 JRNL PMID 24454773 JRNL DOI 10.1371/JOURNAL.PONE.0084973 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.000 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.982 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.34 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.94 REMARK 3 NUMBER OF REFLECTIONS : 11607 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.2004 REMARK 3 R VALUE (WORKING SET) : 0.1996 REMARK 3 FREE R VALUE : 0.2158 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.8 REMARK 3 FREE R VALUE TEST SET COUNT : 553 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.9875 - 4.7611 1.00 2928 127 0.1860 0.2024 REMARK 3 2 4.7611 - 3.7795 1.00 2733 140 0.1744 0.1614 REMARK 3 3 3.7795 - 3.3019 1.00 2710 144 0.2095 0.2553 REMARK 3 4 3.3019 - 3.0001 1.00 2683 142 0.2625 0.2888 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.36 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.72 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.83 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2710 REMARK 3 ANGLE : 0.846 3657 REMARK 3 CHIRALITY : 0.031 386 REMARK 3 PLANARITY : 0.003 470 REMARK 3 DIHEDRAL : 13.656 1024 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 325 THROUGH 386 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.5261 -23.3295 -54.3418 REMARK 3 T TENSOR REMARK 3 T11: 0.2055 T22: 0.1991 REMARK 3 T33: 0.2489 T12: -0.0078 REMARK 3 T13: -0.0393 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 1.9810 L22: 2.9029 REMARK 3 L33: 0.5379 L12: -1.6324 REMARK 3 L13: 0.4590 L23: -0.2348 REMARK 3 S TENSOR REMARK 3 S11: 0.0618 S12: 0.3279 S13: -0.1144 REMARK 3 S21: -0.3200 S22: -0.1703 S23: 0.0721 REMARK 3 S31: -0.0625 S32: -0.0320 S33: 0.0641 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 387 THROUGH 403 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.3306 -15.9467 -41.7339 REMARK 3 T TENSOR REMARK 3 T11: 0.2636 T22: 0.2362 REMARK 3 T33: 0.1282 T12: 0.0033 REMARK 3 T13: -0.0318 T23: -0.0358 REMARK 3 L TENSOR REMARK 3 L11: 6.0725 L22: 2.3919 REMARK 3 L33: 2.7680 L12: 0.7965 REMARK 3 L13: -2.7733 L23: -1.1895 REMARK 3 S TENSOR REMARK 3 S11: 0.3984 S12: 0.0604 S13: 0.3209 REMARK 3 S21: 0.3683 S22: 0.0035 S23: 0.0970 REMARK 3 S31: -0.5836 S32: -0.1436 S33: -0.3584 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 404 THROUGH 445 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.9784 -31.6737 -45.9714 REMARK 3 T TENSOR REMARK 3 T11: 0.2538 T22: 0.2119 REMARK 3 T33: 0.3487 T12: 0.0050 REMARK 3 T13: -0.0490 T23: 0.0664 REMARK 3 L TENSOR REMARK 3 L11: 2.8108 L22: 2.6858 REMARK 3 L33: 1.1759 L12: -0.5460 REMARK 3 L13: 0.0615 L23: -0.1029 REMARK 3 S TENSOR REMARK 3 S11: -0.0366 S12: -0.0126 S13: -0.5001 REMARK 3 S21: 0.2481 S22: 0.1373 S23: 0.3442 REMARK 3 S31: 0.1772 S32: 0.0813 S33: -0.1002 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESID 446 THROUGH 474 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.1723 -17.4315 -32.7891 REMARK 3 T TENSOR REMARK 3 T11: 0.3779 T22: 0.3445 REMARK 3 T33: 0.1981 T12: 0.0701 REMARK 3 T13: 0.0018 T23: 0.0288 REMARK 3 L TENSOR REMARK 3 L11: 4.3504 L22: 4.0024 REMARK 3 L33: 1.8399 L12: -2.4615 REMARK 3 L13: 0.3666 L23: 0.6246 REMARK 3 S TENSOR REMARK 3 S11: -0.1577 S12: -0.4923 S13: 0.1646 REMARK 3 S21: 0.7009 S22: 0.1149 S23: -0.1016 REMARK 3 S31: 0.1335 S32: -0.0660 S33: 0.0299 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESID 475 THROUGH 485 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.2430 -10.7049 -36.4116 REMARK 3 T TENSOR REMARK 3 T11: 0.2969 T22: 0.3294 REMARK 3 T33: 0.2729 T12: 0.1110 REMARK 3 T13: 0.0089 T23: 0.0094 REMARK 3 L TENSOR REMARK 3 L11: 4.5177 L22: 3.0098 REMARK 3 L33: 6.5730 L12: 0.5885 REMARK 3 L13: 1.4519 L23: -0.4722 REMARK 3 S TENSOR REMARK 3 S11: -0.0573 S12: 0.0315 S13: 0.5839 REMARK 3 S21: 0.5679 S22: 0.2538 S23: -0.1810 REMARK 3 S31: -0.0696 S32: -0.2699 S33: 0.3806 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND (RESID 326 THROUGH 340 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.1377 -24.9350 -8.0746 REMARK 3 T TENSOR REMARK 3 T11: 0.4757 T22: 0.3243 REMARK 3 T33: 0.2957 T12: -0.0424 REMARK 3 T13: -0.1654 T23: 0.0949 REMARK 3 L TENSOR REMARK 3 L11: 2.7892 L22: 6.1621 REMARK 3 L33: 3.2583 L12: 0.4410 REMARK 3 L13: -1.6101 L23: 3.5010 REMARK 3 S TENSOR REMARK 3 S11: -0.2270 S12: -0.3303 S13: -0.0768 REMARK 3 S21: 0.7905 S22: -0.2242 S23: -0.3240 REMARK 3 S31: -0.2445 S32: 0.7401 S33: 0.1590 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN B AND (RESID 341 THROUGH 349 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.9700 -22.1103 -3.2060 REMARK 3 T TENSOR REMARK 3 T11: 0.5706 T22: 0.4466 REMARK 3 T33: 0.1679 T12: 0.0549 REMARK 3 T13: -0.0301 T23: -0.0936 REMARK 3 L TENSOR REMARK 3 L11: 4.6135 L22: 2.2861 REMARK 3 L33: 1.6043 L12: 2.1289 REMARK 3 L13: 0.7658 L23: 1.5745 REMARK 3 S TENSOR REMARK 3 S11: 0.1432 S12: -0.5155 S13: 0.0083 REMARK 3 S21: 0.7371 S22: 0.0847 S23: -0.3191 REMARK 3 S31: -0.4585 S32: 0.7443 S33: -0.2334 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN B AND (RESID 350 THROUGH 376 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.3799 -27.4329 -8.5615 REMARK 3 T TENSOR REMARK 3 T11: 0.2991 T22: 0.3330 REMARK 3 T33: 0.2468 T12: -0.0017 REMARK 3 T13: -0.0818 T23: -0.0062 REMARK 3 L TENSOR REMARK 3 L11: 1.8422 L22: 2.6549 REMARK 3 L33: 1.3283 L12: 1.5843 REMARK 3 L13: -0.6146 L23: -0.1336 REMARK 3 S TENSOR REMARK 3 S11: 0.2325 S12: -0.2618 S13: 0.1651 REMARK 3 S21: 0.5214 S22: -0.1930 S23: 0.1868 REMARK 3 S31: -0.2132 S32: 0.1065 S33: -0.0136 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN B AND (RESID 377 THROUGH 403 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.3045 -19.5424 -18.9948 REMARK 3 T TENSOR REMARK 3 T11: 0.3961 T22: 0.4343 REMARK 3 T33: 0.3012 T12: -0.0584 REMARK 3 T13: -0.1107 T23: 0.0588 REMARK 3 L TENSOR REMARK 3 L11: 3.3844 L22: 2.2092 REMARK 3 L33: 3.1549 L12: -0.3212 REMARK 3 L13: -1.3808 L23: -0.2763 REMARK 3 S TENSOR REMARK 3 S11: -0.0276 S12: 0.0925 S13: 0.2896 REMARK 3 S21: 0.2190 S22: -0.2219 S23: -0.3905 REMARK 3 S31: -0.4962 S32: 0.5927 S33: 0.2665 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN B AND (RESID 404 THROUGH 445 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.2784 -32.0119 -17.0341 REMARK 3 T TENSOR REMARK 3 T11: 0.3243 T22: 0.2930 REMARK 3 T33: 0.2761 T12: 0.0032 REMARK 3 T13: -0.0914 T23: 0.0385 REMARK 3 L TENSOR REMARK 3 L11: 3.6325 L22: 3.7441 REMARK 3 L33: 2.8118 L12: 2.9278 REMARK 3 L13: -1.1699 L23: 0.7820 REMARK 3 S TENSOR REMARK 3 S11: -0.1131 S12: -0.1066 S13: -0.1667 REMARK 3 S21: -0.0293 S22: -0.2107 S23: 0.1331 REMARK 3 S31: 0.0413 S32: -0.0182 S33: 0.2442 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN B AND (RESID 446 THROUGH 485 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.1313 -18.4565 -29.2071 REMARK 3 T TENSOR REMARK 3 T11: 0.4419 T22: 0.5374 REMARK 3 T33: 0.3243 T12: 0.0492 REMARK 3 T13: -0.0277 T23: 0.1513 REMARK 3 L TENSOR REMARK 3 L11: 3.2158 L22: 1.4903 REMARK 3 L33: 2.8377 L12: -0.1798 REMARK 3 L13: 0.1038 L23: -0.2803 REMARK 3 S TENSOR REMARK 3 S11: 0.1342 S12: 0.6260 S13: 0.4604 REMARK 3 S21: -0.3863 S22: -0.2327 S23: -0.4257 REMARK 3 S31: -0.1858 S32: 0.2553 S33: 0.1593 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 SELECTION : CHAIN A AND SEGID A REMARK 3 SELECTION : CHAIN B AND SEGID B REMARK 3 RESTRAINED TORSIONS: 1582 REMARK 3 BELOW LIMIT RMSD : 0.891 REMARK 3 ALL RESTRAINT RMSD : 4.849 REMARK 3 HISTOGRAM OF DIFFERENCES UNDER LIMIT: REMARK 3 0.000 - 1.500: 1548 REMARK 3 1.500 - 3.000: 18 REMARK 3 3.000 - 4.500: 0 REMARK 3 4.500 - 6.000: 1 REMARK 3 6.000 - 7.500: 3 REMARK 3 7.500 - 9.000: 2 REMARK 3 9.000 - 10.500: 0 REMARK 3 10.500 - 12.000: 1 REMARK 3 12.000 - 13.500: 0 REMARK 3 13.500 - 15.000: 2 REMARK 3 HISTOGRAM OF DIFFERENCES OVER LIMIT: REMARK 3 15.000 - 26.900: 1 REMARK 3 26.900 - 38.800: 3 REMARK 3 38.800 - 50.700: 0 REMARK 3 50.700 - 62.600: 0 REMARK 3 62.600 - 74.500: 0 REMARK 3 74.500 - 86.400: 1 REMARK 3 86.400 - 98.300: 1 REMARK 3 98.300 - 110.200: 0 REMARK 3 110.200 - 122.100: 0 REMARK 3 122.100 - 134.000: 1 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4CHF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-DEC-13. REMARK 100 THE PDBE ID CODE IS EBI-59132. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-FEB-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8726 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD (MX-225) REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11610 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.00 REMARK 200 RESOLUTION RANGE LOW (A) : 50.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.2 REMARK 200 R MERGE (I) : 0.22 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.90 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 10.4 REMARK 200 R MERGE FOR SHELL (I) : 0.95 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.80 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: THOGOTO PB2 PUTATIVE CAP-BINDING DOMAIN REMARK 200 FORM 1 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.9 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM BIS-TRIS PH 6.0, 100 MM REMARK 280 MGCL2 AND 22 % PEG3350 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 50.72000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 50.72000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 50.72000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 50.72000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 50.72000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.72000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 50.72000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.72000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 319 REMARK 465 ALA A 320 REMARK 465 MET A 321 REMARK 465 ALA A 322 REMARK 465 SER A 323 REMARK 465 THR A 324 REMARK 465 SER A 486 REMARK 465 GLY B 319 REMARK 465 ALA B 320 REMARK 465 MET B 321 REMARK 465 ALA B 322 REMARK 465 SER B 323 REMARK 465 THR B 324 REMARK 465 HIS B 325 REMARK 465 SER B 486 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LEU A 353 C SER A 354 N -0.305 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 353 CA - C - N ANGL. DEV. = 18.6 DEGREES REMARK 500 LEU A 353 O - C - N ANGL. DEV. = -19.8 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 331 -119.84 54.93 REMARK 500 ASP A 377 -117.22 56.08 REMARK 500 ASP A 387 -118.12 56.95 REMARK 500 PHE A 421 -55.09 -140.88 REMARK 500 PHE A 425 31.99 -98.80 REMARK 500 ARG B 331 -118.56 53.10 REMARK 500 ASP B 377 -117.10 56.10 REMARK 500 ASP B 387 -117.19 56.61 REMARK 500 PHE B 421 -54.43 -140.81 REMARK 500 PHE B 425 33.00 -98.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CGS RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF THE PA REMARK 900 SUBUNIT OF DHORI VIRUS POLYMERASE REMARK 900 RELATED ID: 4CGX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF THE PA REMARK 900 SUBUNIT OF THOGOTO VIRUS POLYMERASE (FORM 1) REMARK 900 RELATED ID: 4CHC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF THE PA REMARK 900 SUBUNIT OF THOGOTO VIRUS POLYMERASE (FORM 2) REMARK 900 RELATED ID: 4CHD RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE '627' DOMAIN OF THE PB2 REMARK 900 SUBUNIT OF THOGOTO VIRUS POLYMERASE REMARK 900 RELATED ID: 4CHE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PUTATIVE CAP-BINDING DOMAIN REMARK 900 OF THE PB2 SUBUNIT OF THOGOTO VIRUS POLYMERASE REMARK 999 REMARK 999 SEQUENCE REMARK 999 EXTRA GAMA AT N-TERMINUS AFTER HIS-TAG CLEAVAGE DBREF 4CHF A 323 486 UNP Q9YNA4 PB2_THOGV 323 486 DBREF 4CHF B 323 486 UNP Q9YNA4 PB2_THOGV 323 486 SEQADV 4CHF GLY A 319 UNP Q9YNA4 EXPRESSION TAG SEQADV 4CHF ALA A 320 UNP Q9YNA4 EXPRESSION TAG SEQADV 4CHF MET A 321 UNP Q9YNA4 EXPRESSION TAG SEQADV 4CHF ALA A 322 UNP Q9YNA4 EXPRESSION TAG SEQADV 4CHF GLY B 319 UNP Q9YNA4 EXPRESSION TAG SEQADV 4CHF ALA B 320 UNP Q9YNA4 EXPRESSION TAG SEQADV 4CHF MET B 321 UNP Q9YNA4 EXPRESSION TAG SEQADV 4CHF ALA B 322 UNP Q9YNA4 EXPRESSION TAG SEQRES 1 A 168 GLY ALA MET ALA SER THR HIS HIS THR MET LYS ILE ARG SEQRES 2 A 168 SER THR LYS PHE SER ILE LEU ASN SER ASP HIS PRO ARG SEQRES 3 A 168 ILE GLU VAL LYS LYS VAL PHE SER LEU SER PRO ASP VAL SEQRES 4 A 168 GLN VAL THR ILE PRO TYR ARG ARG PHE LYS GLY LYS ALA SEQRES 5 A 168 LYS VAL TYR PHE GLN ASN ASP GLN ILE GLN GLY TYR PHE SEQRES 6 A 168 SER CYS THR ASP ARG GLN ILE ASP GLU ILE LYS ILE SER SEQRES 7 A 168 ALA PRO LYS ASN ALA PRO LEU LEU GLU PRO LEU LEU ASP SEQRES 8 A 168 ILE CYS TYR TYR GLY SER PHE ILE GLU PRO GLY PHE GLU SEQRES 9 A 168 GLN THR PHE GLY PHE TYR PRO ALA GLY LYS ARG GLU PHE SEQRES 10 A 168 VAL ASP SER PHE PHE MET HIS HIS SER LYS ASP HIS LYS SEQRES 11 A 168 ALA PHE LEU ILE HIS MET GLY LEU ASP LYS ASP LEU SER SEQRES 12 A 168 LEU PRO LEU SER PRO GLU LEU ASN TRP LYS GLU PRO ALA SEQRES 13 A 168 LEU SER LYS VAL CYS ARG VAL THR GLU LEU ASP SER SEQRES 1 B 168 GLY ALA MET ALA SER THR HIS HIS THR MET LYS ILE ARG SEQRES 2 B 168 SER THR LYS PHE SER ILE LEU ASN SER ASP HIS PRO ARG SEQRES 3 B 168 ILE GLU VAL LYS LYS VAL PHE SER LEU SER PRO ASP VAL SEQRES 4 B 168 GLN VAL THR ILE PRO TYR ARG ARG PHE LYS GLY LYS ALA SEQRES 5 B 168 LYS VAL TYR PHE GLN ASN ASP GLN ILE GLN GLY TYR PHE SEQRES 6 B 168 SER CYS THR ASP ARG GLN ILE ASP GLU ILE LYS ILE SER SEQRES 7 B 168 ALA PRO LYS ASN ALA PRO LEU LEU GLU PRO LEU LEU ASP SEQRES 8 B 168 ILE CYS TYR TYR GLY SER PHE ILE GLU PRO GLY PHE GLU SEQRES 9 B 168 GLN THR PHE GLY PHE TYR PRO ALA GLY LYS ARG GLU PHE SEQRES 10 B 168 VAL ASP SER PHE PHE MET HIS HIS SER LYS ASP HIS LYS SEQRES 11 B 168 ALA PHE LEU ILE HIS MET GLY LEU ASP LYS ASP LEU SER SEQRES 12 B 168 LEU PRO LEU SER PRO GLU LEU ASN TRP LYS GLU PRO ALA SEQRES 13 B 168 LEU SER LYS VAL CYS ARG VAL THR GLU LEU ASP SER HELIX 1 1 LEU A 403 SER A 415 1 13 HELIX 2 2 GLY A 431 ASP A 446 1 16 HELIX 3 3 HIS A 447 GLY A 455 1 9 HELIX 4 4 LEU B 403 SER B 415 1 13 HELIX 5 5 GLY B 431 ASP B 446 1 16 HELIX 6 6 HIS B 447 GLY B 455 1 9 SHEET 1 AA 6 MET A 328 ILE A 330 0 SHEET 2 AA 6 THR A 333 SER A 340 -1 O THR A 333 N ILE A 330 SHEET 3 AA 6 LYS A 369 ASN A 376 -1 O LYS A 371 N LEU A 338 SHEET 4 AA 6 ILE A 379 THR A 386 -1 O ILE A 379 N ASN A 376 SHEET 5 AA 6 GLN A 389 SER A 396 -1 O GLN A 389 N THR A 386 SHEET 6 AA 6 VAL A 481 GLU A 483 1 O THR A 482 N ILE A 395 SHEET 1 AB 2 ILE A 345 VAL A 347 0 SHEET 2 AB 2 TYR A 363 ARG A 365 -1 O TYR A 363 N VAL A 347 SHEET 1 AC 2 VAL A 350 SER A 354 0 SHEET 2 AC 2 VAL A 357 THR A 360 -1 O VAL A 357 N LEU A 353 SHEET 1 AD 2 LEU A 456 ASP A 457 0 SHEET 2 AD 2 LYS A 477 VAL A 478 -1 O LYS A 477 N ASP A 457 SHEET 1 BA 6 MET B 328 ILE B 330 0 SHEET 2 BA 6 THR B 333 SER B 340 -1 O THR B 333 N ILE B 330 SHEET 3 BA 6 LYS B 369 ASN B 376 -1 O LYS B 371 N LEU B 338 SHEET 4 BA 6 ILE B 379 THR B 386 -1 O ILE B 379 N ASN B 376 SHEET 5 BA 6 GLN B 389 SER B 396 -1 O GLN B 389 N THR B 386 SHEET 6 BA 6 VAL B 481 GLU B 483 1 O THR B 482 N ILE B 395 SHEET 1 BB 2 ILE B 345 VAL B 347 0 SHEET 2 BB 2 TYR B 363 ARG B 365 -1 O TYR B 363 N VAL B 347 SHEET 1 BC 2 VAL B 350 SER B 354 0 SHEET 2 BC 2 VAL B 357 THR B 360 -1 O VAL B 357 N LEU B 353 SHEET 1 BD 2 LEU B 456 ASP B 457 0 SHEET 2 BD 2 LYS B 477 VAL B 478 -1 O LYS B 477 N ASP B 457 CISPEP 1 GLU A 418 PRO A 419 0 -4.18 CISPEP 2 GLU B 418 PRO B 419 0 -4.39 CRYST1 101.440 101.440 106.020 90.00 90.00 90.00 P 4 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009858 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009858 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009432 0.00000