data_4CJD # _entry.id 4CJD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4CJD pdb_00004cjd 10.2210/pdb4cjd/pdb PDBE EBI-59271 ? ? WWPDB D_1290059271 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-11-26 2 'Structure model' 1 1 2014-12-17 3 'Structure model' 2 0 2024-05-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Atomic model' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' 6 3 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' atom_site 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' database_2 5 3 'Structure model' pdbx_database_status 6 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_atom_site.occupancy' 2 3 'Structure model' '_database_2.pdbx_DOI' 3 3 'Structure model' '_database_2.pdbx_database_accession' 4 3 'Structure model' '_pdbx_database_status.status_code_sf' 5 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4CJD _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2013-12-19 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Malito, E.' 1 'Biancucci, M.' 2 'Spraggon, G.' 3 'Bottomley, M.J.' 4 # _citation.id primary _citation.title 'Structure of the Meningococcal Vaccine Antigen Nada and Epitope Mapping of a Bactericidal Antibody.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 111 _citation.page_first 17128 _citation.page_last ? _citation.year 2014 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25404323 _citation.pdbx_database_id_DOI 10.1073/PNAS.1419686111 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Malito, E.' 1 ? primary 'Biancucci, M.' 2 ? primary 'Faleri, A.' 3 ? primary 'Ferlenghi, I.' 4 ? primary 'Scarselli, M.' 5 ? primary 'Maruggi, G.' 6 ? primary 'Lo Surdo, P.' 7 ? primary 'Veggi, D.' 8 ? primary 'Liguori, A.' 9 ? primary 'Santini, L.' 10 ? primary 'Bertoldi, I.' 11 ? primary 'Petracca, R.' 12 ? primary 'Marchi, S.' 13 ? primary 'Romagnoli, G.' 14 ? primary 'Cartocci, E.' 15 ? primary 'Vercellino, I.' 16 ? primary 'Savino, S.' 17 ? primary 'Spraggon, G.' 18 ? primary 'Norais, N.' 19 ? primary 'Pizza, M.' 20 ? primary 'Rappuoli, R.' 21 ? primary 'Masignani, V.' 22 ? primary 'Bottomley, M.J.' 23 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man NADA 22350.486 1 ? ? ? ? 2 non-polymer syn 'IODIDE ION' 126.904 4 ? ? ? ? 3 water nat water 18.015 100 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'ADHESIN A' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MKDNPPPSTDEIAKAALVGVYNNTQDINGFKVGDTIYDIENGQPKGRPATEDDVKADDFGGLGLKEVLAQHDQSLADLTG TVEENSEALVKTAEVVNDISADVKANTAAIRENKAAIATKADKTELDEVSGKVTANETAIGKKANSADVYTKAEVYTKQE SDNRFVKIGDRIGNLNTTANGLETRLADAEKSVKDHGTRASKHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MKDNPPPSTDEIAKAALVGVYNNTQDINGFKVGDTIYDIENGQPKGRPATEDDVKADDFGGLGLKEVLAQHDQSLADLTG TVEENSEALVKTAEVVNDISADVKANTAAIRENKAAIATKADKTELDEVSGKVTANETAIGKKANSADVYTKAEVYTKQE SDNRFVKIGDRIGNLNTTANGLETRLADAEKSVKDHGTRASKHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'IODIDE ION' IOD 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LYS n 1 3 ASP n 1 4 ASN n 1 5 PRO n 1 6 PRO n 1 7 PRO n 1 8 SER n 1 9 THR n 1 10 ASP n 1 11 GLU n 1 12 ILE n 1 13 ALA n 1 14 LYS n 1 15 ALA n 1 16 ALA n 1 17 LEU n 1 18 VAL n 1 19 GLY n 1 20 VAL n 1 21 TYR n 1 22 ASN n 1 23 ASN n 1 24 THR n 1 25 GLN n 1 26 ASP n 1 27 ILE n 1 28 ASN n 1 29 GLY n 1 30 PHE n 1 31 LYS n 1 32 VAL n 1 33 GLY n 1 34 ASP n 1 35 THR n 1 36 ILE n 1 37 TYR n 1 38 ASP n 1 39 ILE n 1 40 GLU n 1 41 ASN n 1 42 GLY n 1 43 GLN n 1 44 PRO n 1 45 LYS n 1 46 GLY n 1 47 ARG n 1 48 PRO n 1 49 ALA n 1 50 THR n 1 51 GLU n 1 52 ASP n 1 53 ASP n 1 54 VAL n 1 55 LYS n 1 56 ALA n 1 57 ASP n 1 58 ASP n 1 59 PHE n 1 60 GLY n 1 61 GLY n 1 62 LEU n 1 63 GLY n 1 64 LEU n 1 65 LYS n 1 66 GLU n 1 67 VAL n 1 68 LEU n 1 69 ALA n 1 70 GLN n 1 71 HIS n 1 72 ASP n 1 73 GLN n 1 74 SER n 1 75 LEU n 1 76 ALA n 1 77 ASP n 1 78 LEU n 1 79 THR n 1 80 GLY n 1 81 THR n 1 82 VAL n 1 83 GLU n 1 84 GLU n 1 85 ASN n 1 86 SER n 1 87 GLU n 1 88 ALA n 1 89 LEU n 1 90 VAL n 1 91 LYS n 1 92 THR n 1 93 ALA n 1 94 GLU n 1 95 VAL n 1 96 VAL n 1 97 ASN n 1 98 ASP n 1 99 ILE n 1 100 SER n 1 101 ALA n 1 102 ASP n 1 103 VAL n 1 104 LYS n 1 105 ALA n 1 106 ASN n 1 107 THR n 1 108 ALA n 1 109 ALA n 1 110 ILE n 1 111 ARG n 1 112 GLU n 1 113 ASN n 1 114 LYS n 1 115 ALA n 1 116 ALA n 1 117 ILE n 1 118 ALA n 1 119 THR n 1 120 LYS n 1 121 ALA n 1 122 ASP n 1 123 LYS n 1 124 THR n 1 125 GLU n 1 126 LEU n 1 127 ASP n 1 128 GLU n 1 129 VAL n 1 130 SER n 1 131 GLY n 1 132 LYS n 1 133 VAL n 1 134 THR n 1 135 ALA n 1 136 ASN n 1 137 GLU n 1 138 THR n 1 139 ALA n 1 140 ILE n 1 141 GLY n 1 142 LYS n 1 143 LYS n 1 144 ALA n 1 145 ASN n 1 146 SER n 1 147 ALA n 1 148 ASP n 1 149 VAL n 1 150 TYR n 1 151 THR n 1 152 LYS n 1 153 ALA n 1 154 GLU n 1 155 VAL n 1 156 TYR n 1 157 THR n 1 158 LYS n 1 159 GLN n 1 160 GLU n 1 161 SER n 1 162 ASP n 1 163 ASN n 1 164 ARG n 1 165 PHE n 1 166 VAL n 1 167 LYS n 1 168 ILE n 1 169 GLY n 1 170 ASP n 1 171 ARG n 1 172 ILE n 1 173 GLY n 1 174 ASN n 1 175 LEU n 1 176 ASN n 1 177 THR n 1 178 THR n 1 179 ALA n 1 180 ASN n 1 181 GLY n 1 182 LEU n 1 183 GLU n 1 184 THR n 1 185 ARG n 1 186 LEU n 1 187 ALA n 1 188 ASP n 1 189 ALA n 1 190 GLU n 1 191 LYS n 1 192 SER n 1 193 VAL n 1 194 LYS n 1 195 ASP n 1 196 HIS n 1 197 GLY n 1 198 THR n 1 199 ARG n 1 200 ALA n 1 201 SER n 1 202 LYS n 1 203 HIS n 1 204 HIS n 1 205 HIS n 1 206 HIS n 1 207 HIS n 1 208 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain M01-240320 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'NEISSERIA MENINGITIDIS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 487 _entity_src_gen.pdbx_gene_src_variant 'VARIANT 5' _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector PET21B _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 IOD non-polymer . 'IODIDE ION' ? 'I -1' 126.904 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 22 ? ? ? A . n A 1 2 LYS 2 23 ? ? ? A . n A 1 3 ASP 3 24 ? ? ? A . n A 1 4 ASN 4 25 ? ? ? A . n A 1 5 PRO 5 26 ? ? ? A . n A 1 6 PRO 6 27 27 PRO PRO A . n A 1 7 PRO 7 28 28 PRO PRO A . n A 1 8 SER 8 29 29 SER SER A . n A 1 9 THR 9 30 30 THR THR A . n A 1 10 ASP 10 31 31 ASP ASP A . n A 1 11 GLU 11 32 32 GLU GLU A . n A 1 12 ILE 12 33 33 ILE ILE A . n A 1 13 ALA 13 34 34 ALA ALA A . n A 1 14 LYS 14 35 35 LYS LYS A . n A 1 15 ALA 15 36 36 ALA ALA A . n A 1 16 ALA 16 37 37 ALA ALA A . n A 1 17 LEU 17 38 38 LEU LEU A . n A 1 18 VAL 18 39 39 VAL VAL A . n A 1 19 GLY 19 40 40 GLY GLY A . n A 1 20 VAL 20 41 41 VAL VAL A . n A 1 21 TYR 21 42 42 TYR TYR A . n A 1 22 ASN 22 43 43 ASN ASN A . n A 1 23 ASN 23 44 44 ASN ASN A . n A 1 24 THR 24 45 45 THR THR A . n A 1 25 GLN 25 46 46 GLN GLN A . n A 1 26 ASP 26 47 47 ASP ASP A . n A 1 27 ILE 27 48 48 ILE ILE A . n A 1 28 ASN 28 49 49 ASN ASN A . n A 1 29 GLY 29 50 50 GLY GLY A . n A 1 30 PHE 30 51 51 PHE PHE A . n A 1 31 LYS 31 52 52 LYS LYS A . n A 1 32 VAL 32 53 53 VAL VAL A . n A 1 33 GLY 33 54 54 GLY GLY A . n A 1 34 ASP 34 55 55 ASP ASP A . n A 1 35 THR 35 56 56 THR THR A . n A 1 36 ILE 36 57 57 ILE ILE A . n A 1 37 TYR 37 58 58 TYR TYR A . n A 1 38 ASP 38 59 59 ASP ASP A . n A 1 39 ILE 39 60 60 ILE ILE A . n A 1 40 GLU 40 61 61 GLU GLU A . n A 1 41 ASN 41 62 62 ASN ASN A . n A 1 42 GLY 42 63 63 GLY GLY A . n A 1 43 GLN 43 64 64 GLN GLN A . n A 1 44 PRO 44 65 65 PRO PRO A . n A 1 45 LYS 45 66 66 LYS LYS A . n A 1 46 GLY 46 67 67 GLY GLY A . n A 1 47 ARG 47 68 68 ARG ARG A . n A 1 48 PRO 48 69 69 PRO PRO A . n A 1 49 ALA 49 70 70 ALA ALA A . n A 1 50 THR 50 71 71 THR THR A . n A 1 51 GLU 51 72 72 GLU GLU A . n A 1 52 ASP 52 73 73 ASP ASP A . n A 1 53 ASP 53 74 74 ASP ASP A . n A 1 54 VAL 54 75 75 VAL VAL A . n A 1 55 LYS 55 76 76 LYS LYS A . n A 1 56 ALA 56 77 77 ALA ALA A . n A 1 57 ASP 57 78 78 ASP ASP A . n A 1 58 ASP 58 79 79 ASP ASP A . n A 1 59 PHE 59 80 80 PHE PHE A . n A 1 60 GLY 60 81 81 GLY GLY A . n A 1 61 GLY 61 82 82 GLY GLY A . n A 1 62 LEU 62 83 83 LEU LEU A . n A 1 63 GLY 63 84 84 GLY GLY A . n A 1 64 LEU 64 85 85 LEU LEU A . n A 1 65 LYS 65 86 86 LYS LYS A . n A 1 66 GLU 66 87 87 GLU GLU A . n A 1 67 VAL 67 88 88 VAL VAL A . n A 1 68 LEU 68 89 89 LEU LEU A . n A 1 69 ALA 69 90 90 ALA ALA A . n A 1 70 GLN 70 91 91 GLN GLN A . n A 1 71 HIS 71 92 92 HIS HIS A . n A 1 72 ASP 72 93 93 ASP ASP A . n A 1 73 GLN 73 94 94 GLN GLN A . n A 1 74 SER 74 95 95 SER SER A . n A 1 75 LEU 75 96 96 LEU LEU A . n A 1 76 ALA 76 97 97 ALA ALA A . n A 1 77 ASP 77 98 98 ASP ASP A . n A 1 78 LEU 78 99 99 LEU LEU A . n A 1 79 THR 79 100 100 THR THR A . n A 1 80 GLY 80 101 101 GLY GLY A . n A 1 81 THR 81 102 102 THR THR A . n A 1 82 VAL 82 103 103 VAL VAL A . n A 1 83 GLU 83 104 104 GLU GLU A . n A 1 84 GLU 84 105 105 GLU GLU A . n A 1 85 ASN 85 106 106 ASN ASN A . n A 1 86 SER 86 107 107 SER SER A . n A 1 87 GLU 87 108 108 GLU GLU A . n A 1 88 ALA 88 109 109 ALA ALA A . n A 1 89 LEU 89 110 110 LEU LEU A . n A 1 90 VAL 90 111 111 VAL VAL A . n A 1 91 LYS 91 112 112 LYS LYS A . n A 1 92 THR 92 113 113 THR THR A . n A 1 93 ALA 93 114 114 ALA ALA A . n A 1 94 GLU 94 115 115 GLU GLU A . n A 1 95 VAL 95 116 116 VAL VAL A . n A 1 96 VAL 96 117 117 VAL VAL A . n A 1 97 ASN 97 118 118 ASN ASN A . n A 1 98 ASP 98 119 119 ASP ASP A . n A 1 99 ILE 99 120 120 ILE ILE A . n A 1 100 SER 100 121 121 SER SER A . n A 1 101 ALA 101 122 122 ALA ALA A . n A 1 102 ASP 102 123 123 ASP ASP A . n A 1 103 VAL 103 124 124 VAL VAL A . n A 1 104 LYS 104 125 125 LYS LYS A . n A 1 105 ALA 105 126 126 ALA ALA A . n A 1 106 ASN 106 127 127 ASN ASN A . n A 1 107 THR 107 128 128 THR THR A . n A 1 108 ALA 108 129 129 ALA ALA A . n A 1 109 ALA 109 130 130 ALA ALA A . n A 1 110 ILE 110 131 131 ILE ILE A . n A 1 111 ARG 111 132 132 ARG ARG A . n A 1 112 GLU 112 133 133 GLU GLU A . n A 1 113 ASN 113 134 134 ASN ASN A . n A 1 114 LYS 114 135 135 LYS LYS A . n A 1 115 ALA 115 136 136 ALA ALA A . n A 1 116 ALA 116 137 137 ALA ALA A . n A 1 117 ILE 117 138 ? ? ? A . n A 1 118 ALA 118 139 ? ? ? A . n A 1 119 THR 119 140 ? ? ? A . n A 1 120 LYS 120 141 ? ? ? A . n A 1 121 ALA 121 142 ? ? ? A . n A 1 122 ASP 122 143 ? ? ? A . n A 1 123 LYS 123 144 ? ? ? A . n A 1 124 THR 124 145 ? ? ? A . n A 1 125 GLU 125 146 ? ? ? A . n A 1 126 LEU 126 147 ? ? ? A . n A 1 127 ASP 127 148 ? ? ? A . n A 1 128 GLU 128 149 ? ? ? A . n A 1 129 VAL 129 150 ? ? ? A . n A 1 130 SER 130 151 ? ? ? A . n A 1 131 GLY 131 152 ? ? ? A . n A 1 132 LYS 132 153 ? ? ? A . n A 1 133 VAL 133 154 ? ? ? A . n A 1 134 THR 134 155 ? ? ? A . n A 1 135 ALA 135 156 ? ? ? A . n A 1 136 ASN 136 157 ? ? ? A . n A 1 137 GLU 137 158 ? ? ? A . n A 1 138 THR 138 159 ? ? ? A . n A 1 139 ALA 139 160 ? ? ? A . n A 1 140 ILE 140 161 ? ? ? A . n A 1 141 GLY 141 162 ? ? ? A . n A 1 142 LYS 142 163 ? ? ? A . n A 1 143 LYS 143 164 ? ? ? A . n A 1 144 ALA 144 165 ? ? ? A . n A 1 145 ASN 145 166 ? ? ? A . n A 1 146 SER 146 167 ? ? ? A . n A 1 147 ALA 147 168 ? ? ? A . n A 1 148 ASP 148 169 ? ? ? A . n A 1 149 VAL 149 170 ? ? ? A . n A 1 150 TYR 150 171 ? ? ? A . n A 1 151 THR 151 172 ? ? ? A . n A 1 152 LYS 152 173 ? ? ? A . n A 1 153 ALA 153 174 ? ? ? A . n A 1 154 GLU 154 175 ? ? ? A . n A 1 155 VAL 155 176 ? ? ? A . n A 1 156 TYR 156 177 ? ? ? A . n A 1 157 THR 157 178 ? ? ? A . n A 1 158 LYS 158 179 ? ? ? A . n A 1 159 GLN 159 180 ? ? ? A . n A 1 160 GLU 160 181 ? ? ? A . n A 1 161 SER 161 182 ? ? ? A . n A 1 162 ASP 162 183 ? ? ? A . n A 1 163 ASN 163 184 ? ? ? A . n A 1 164 ARG 164 185 ? ? ? A . n A 1 165 PHE 165 186 ? ? ? A . n A 1 166 VAL 166 187 ? ? ? A . n A 1 167 LYS 167 188 ? ? ? A . n A 1 168 ILE 168 189 ? ? ? A . n A 1 169 GLY 169 190 ? ? ? A . n A 1 170 ASP 170 191 ? ? ? A . n A 1 171 ARG 171 192 ? ? ? A . n A 1 172 ILE 172 193 ? ? ? A . n A 1 173 GLY 173 194 ? ? ? A . n A 1 174 ASN 174 195 ? ? ? A . n A 1 175 LEU 175 196 ? ? ? A . n A 1 176 ASN 176 197 ? ? ? A . n A 1 177 THR 177 198 ? ? ? A . n A 1 178 THR 178 199 199 THR THR A . n A 1 179 ALA 179 200 200 ALA ALA A . n A 1 180 ASN 180 201 201 ASN ASN A . n A 1 181 GLY 181 202 202 GLY GLY A . n A 1 182 LEU 182 203 203 LEU LEU A . n A 1 183 GLU 183 204 204 GLU GLU A . n A 1 184 THR 184 205 205 THR THR A . n A 1 185 ARG 185 206 206 ARG ARG A . n A 1 186 LEU 186 207 207 LEU LEU A . n A 1 187 ALA 187 208 208 ALA ALA A . n A 1 188 ASP 188 209 209 ASP ASP A . n A 1 189 ALA 189 210 210 ALA ALA A . n A 1 190 GLU 190 211 ? ? ? A . n A 1 191 LYS 191 212 ? ? ? A . n A 1 192 SER 192 213 ? ? ? A . n A 1 193 VAL 193 214 ? ? ? A . n A 1 194 LYS 194 215 ? ? ? A . n A 1 195 ASP 195 216 ? ? ? A . n A 1 196 HIS 196 217 ? ? ? A . n A 1 197 GLY 197 218 ? ? ? A . n A 1 198 THR 198 219 ? ? ? A . n A 1 199 ARG 199 220 ? ? ? A . n A 1 200 ALA 200 221 ? ? ? A . n A 1 201 SER 201 222 ? ? ? A . n A 1 202 LYS 202 223 ? ? ? A . n A 1 203 HIS 203 224 ? ? ? A . n A 1 204 HIS 204 225 ? ? ? A . n A 1 205 HIS 205 226 ? ? ? A . n A 1 206 HIS 206 227 ? ? ? A . n A 1 207 HIS 207 228 ? ? ? A . n A 1 208 HIS 208 229 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IOD 1 1001 1001 IOD IOD A . C 2 IOD 1 1002 1002 IOD IOD A . D 2 IOD 1 1003 1003 IOD IOD A . E 2 IOD 1 1004 1004 IOD IOD A . F 3 HOH 1 2001 2001 HOH HOH A . F 3 HOH 2 2002 2002 HOH HOH A . F 3 HOH 3 2003 2003 HOH HOH A . F 3 HOH 4 2004 2004 HOH HOH A . F 3 HOH 5 2005 2005 HOH HOH A . F 3 HOH 6 2006 2006 HOH HOH A . F 3 HOH 7 2007 2007 HOH HOH A . F 3 HOH 8 2008 2008 HOH HOH A . F 3 HOH 9 2009 2009 HOH HOH A . F 3 HOH 10 2010 2010 HOH HOH A . F 3 HOH 11 2011 2011 HOH HOH A . F 3 HOH 12 2012 2012 HOH HOH A . F 3 HOH 13 2013 2013 HOH HOH A . F 3 HOH 14 2014 2014 HOH HOH A . F 3 HOH 15 2015 2015 HOH HOH A . F 3 HOH 16 2016 2016 HOH HOH A . F 3 HOH 17 2017 2017 HOH HOH A . F 3 HOH 18 2018 2018 HOH HOH A . F 3 HOH 19 2019 2019 HOH HOH A . F 3 HOH 20 2020 2020 HOH HOH A . F 3 HOH 21 2021 2021 HOH HOH A . F 3 HOH 22 2022 2022 HOH HOH A . F 3 HOH 23 2023 2023 HOH HOH A . F 3 HOH 24 2024 2024 HOH HOH A . F 3 HOH 25 2025 2025 HOH HOH A . F 3 HOH 26 2026 2026 HOH HOH A . F 3 HOH 27 2027 2027 HOH HOH A . F 3 HOH 28 2028 2028 HOH HOH A . F 3 HOH 29 2029 2029 HOH HOH A . F 3 HOH 30 2030 2030 HOH HOH A . F 3 HOH 31 2031 2031 HOH HOH A . F 3 HOH 32 2032 2032 HOH HOH A . F 3 HOH 33 2033 2033 HOH HOH A . F 3 HOH 34 2034 2034 HOH HOH A . F 3 HOH 35 2035 2035 HOH HOH A . F 3 HOH 36 2036 2036 HOH HOH A . F 3 HOH 37 2037 2037 HOH HOH A . F 3 HOH 38 2038 2038 HOH HOH A . F 3 HOH 39 2039 2039 HOH HOH A . F 3 HOH 40 2040 2040 HOH HOH A . F 3 HOH 41 2041 2041 HOH HOH A . F 3 HOH 42 2042 2042 HOH HOH A . F 3 HOH 43 2043 2043 HOH HOH A . F 3 HOH 44 2044 2044 HOH HOH A . F 3 HOH 45 2045 2045 HOH HOH A . F 3 HOH 46 2046 2046 HOH HOH A . F 3 HOH 47 2047 2047 HOH HOH A . F 3 HOH 48 2048 2048 HOH HOH A . F 3 HOH 49 2049 2049 HOH HOH A . F 3 HOH 50 2050 2050 HOH HOH A . F 3 HOH 51 2051 2051 HOH HOH A . F 3 HOH 52 2052 2052 HOH HOH A . F 3 HOH 53 2053 2053 HOH HOH A . F 3 HOH 54 2054 2054 HOH HOH A . F 3 HOH 55 2055 2055 HOH HOH A . F 3 HOH 56 2056 2056 HOH HOH A . F 3 HOH 57 2057 2057 HOH HOH A . F 3 HOH 58 2058 2058 HOH HOH A . F 3 HOH 59 2059 2059 HOH HOH A . F 3 HOH 60 2060 2060 HOH HOH A . F 3 HOH 61 2061 2061 HOH HOH A . F 3 HOH 62 2062 2062 HOH HOH A . F 3 HOH 63 2063 2063 HOH HOH A . F 3 HOH 64 2064 2064 HOH HOH A . F 3 HOH 65 2065 2065 HOH HOH A . F 3 HOH 66 2066 2066 HOH HOH A . F 3 HOH 67 2067 2067 HOH HOH A . F 3 HOH 68 2068 2068 HOH HOH A . F 3 HOH 69 2069 2069 HOH HOH A . F 3 HOH 70 2070 2070 HOH HOH A . F 3 HOH 71 2071 2071 HOH HOH A . F 3 HOH 72 2072 2072 HOH HOH A . F 3 HOH 73 2073 2073 HOH HOH A . F 3 HOH 74 2074 2074 HOH HOH A . F 3 HOH 75 2075 2075 HOH HOH A . F 3 HOH 76 2076 2076 HOH HOH A . F 3 HOH 77 2077 2077 HOH HOH A . F 3 HOH 78 2078 2078 HOH HOH A . F 3 HOH 79 2079 2079 HOH HOH A . F 3 HOH 80 2080 2080 HOH HOH A . F 3 HOH 81 2081 2081 HOH HOH A . F 3 HOH 82 2082 2082 HOH HOH A . F 3 HOH 83 2083 2083 HOH HOH A . F 3 HOH 84 2084 2084 HOH HOH A . F 3 HOH 85 2085 2085 HOH HOH A . F 3 HOH 86 2086 2086 HOH HOH A . F 3 HOH 87 2087 2087 HOH HOH A . F 3 HOH 88 2088 2088 HOH HOH A . F 3 HOH 89 2089 2089 HOH HOH A . F 3 HOH 90 2090 2090 HOH HOH A . F 3 HOH 91 2091 2091 HOH HOH A . F 3 HOH 92 2092 2092 HOH HOH A . F 3 HOH 93 2093 2093 HOH HOH A . F 3 HOH 94 2094 2094 HOH HOH A . F 3 HOH 95 2095 2095 HOH HOH A . F 3 HOH 96 2096 2096 HOH HOH A . F 3 HOH 97 2097 2097 HOH HOH A . F 3 HOH 98 2098 2098 HOH HOH A . F 3 HOH 99 2099 2099 HOH HOH A . F 3 HOH 100 2100 2100 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHENIX refinement '(PHENIX.REFINE)' ? 1 XDS 'data reduction' . ? 2 XSCALE 'data scaling' . ? 3 PHENIX phasing . ? 4 # _cell.entry_id 4CJD _cell.length_a 51.227 _cell.length_b 51.227 _cell.length_c 577.942 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CJD _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 # _exptl.entry_id 4CJD _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.12 _exptl_crystal.density_percent_sol 60 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '10% TACSIMATE PH 4.0, 20% PEG 3350' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'PILATUS PILATUS 2M' _diffrn_detector.pdbx_collection_date 2012-08-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X06DA' _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X06DA _diffrn_source.pdbx_wavelength 1.54 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4CJD _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 48.10 _reflns.d_resolution_high 2.05 _reflns.number_obs 34971 _reflns.number_all ? _reflns.percent_possible_obs 99.2 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.06 _reflns.pdbx_netI_over_sigmaI 22.75 _reflns.B_iso_Wilson_estimate 34.8 _reflns.pdbx_redundancy 9.4 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.06 _reflns_shell.d_res_low 2.18 _reflns_shell.percent_possible_all 95.4 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.82 _reflns_shell.meanI_over_sigI_obs 2.18 _reflns_shell.pdbx_redundancy 6.3 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4CJD _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 34948 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 3.50 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 48.162 _refine.ls_d_res_high 2.056 _refine.ls_percent_reflns_obs 99.30 _refine.ls_R_factor_obs 0.1830 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1818 _refine.ls_R_factor_R_free 0.2071 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 1744 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 42 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details 'RESIDUES 138-198 OF THE ORIGINAL CONSTRUCT WERE NOT MODELLED BECAUSE OF WEAK OR MISSING ELECTRON DENSITY, LIKELY DUE TO DISORDER.' _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.18 _refine.pdbx_overall_phase_error 18.67 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 905 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 100 _refine_hist.number_atoms_total 1009 _refine_hist.d_res_high 2.056 _refine_hist.d_res_low 48.162 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.014 ? ? 912 'X-RAY DIFFRACTION' ? f_angle_d 1.207 ? ? 1237 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 12.817 ? ? 332 'X-RAY DIFFRACTION' ? f_chiral_restr 0.054 ? ? 148 'X-RAY DIFFRACTION' ? f_plane_restr 0.005 ? ? 168 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 2.0563 2.1168 2563 0.2825 92.00 0.2686 . . 136 . . 'X-RAY DIFFRACTION' . 2.1168 2.1851 2747 0.2167 100.00 0.2339 . . 144 . . 'X-RAY DIFFRACTION' . 2.1851 2.2632 2797 0.2008 100.00 0.2365 . . 146 . . 'X-RAY DIFFRACTION' . 2.2632 2.3538 2785 0.1716 100.00 0.2495 . . 151 . . 'X-RAY DIFFRACTION' . 2.3538 2.4609 2816 0.1623 100.00 0.1857 . . 149 . . 'X-RAY DIFFRACTION' . 2.4609 2.5907 2737 0.1583 100.00 0.1867 . . 140 . . 'X-RAY DIFFRACTION' . 2.5907 2.7530 2781 0.1467 100.00 0.1729 . . 148 . . 'X-RAY DIFFRACTION' . 2.7530 2.9655 2799 0.1436 100.00 0.1627 . . 149 . . 'X-RAY DIFFRACTION' . 2.9655 3.2639 2788 0.1618 100.00 0.1967 . . 138 . . 'X-RAY DIFFRACTION' . 3.2639 3.7360 2795 0.1501 100.00 0.1764 . . 143 . . 'X-RAY DIFFRACTION' . 3.7360 4.7063 2805 0.1741 100.00 0.1870 . . 150 . . 'X-RAY DIFFRACTION' . 4.7063 48.1750 2791 0.2441 100.00 0.2704 . . 150 . . # _database_PDB_matrix.entry_id 4CJD _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 4CJD _struct.title 'Crystal structure of Neisseria meningitidis trimeric autotransporter and vaccine antigen NadA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4CJD _struct_keywords.pdbx_keywords 'CELL ADHESION' _struct_keywords.text 'CELL ADHESION, TRIMERIC AUTO-TRANSPORTER (TAA), COILED-COIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A0ELI2_NEIME _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession A0ELI2 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4CJD _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 199 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A0ELI2 _struct_ref_seq.db_align_beg 24 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 221 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 24 _struct_ref_seq.pdbx_auth_seq_align_end 220 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4CJD MET A 1 ? UNP A0ELI2 ? ? 'expression tag' 22 1 1 4CJD LYS A 2 ? UNP A0ELI2 ? ? 'expression tag' 23 2 1 4CJD ALA A 200 ? UNP A0ELI2 ? ? 'expression tag' 221 3 1 4CJD SER A 201 ? UNP A0ELI2 ? ? 'expression tag' 222 4 1 4CJD LYS A 202 ? UNP A0ELI2 ? ? 'expression tag' 223 5 1 4CJD HIS A 203 ? UNP A0ELI2 ? ? 'expression tag' 224 6 1 4CJD HIS A 204 ? UNP A0ELI2 ? ? 'expression tag' 225 7 1 4CJD HIS A 205 ? UNP A0ELI2 ? ? 'expression tag' 226 8 1 4CJD HIS A 206 ? UNP A0ELI2 ? ? 'expression tag' 227 9 1 4CJD HIS A 207 ? UNP A0ELI2 ? ? 'expression tag' 228 10 1 4CJD HIS A 208 ? UNP A0ELI2 ? ? 'expression tag' 229 11 1 4CJD GLY A 19 ? UNP A0ELI2 ASN 40 conflict 40 12 1 4CJD VAL A 20 ? UNP A0ELI2 SER 41 conflict 41 13 1 4CJD ? A ? ? UNP A0ELI2 GLY 50 deletion ? 14 1 4CJD GLU A 40 ? UNP A0ELI2 ASN 61 conflict 61 15 1 4CJD GLN A 43 ? UNP A0ELI2 LYS 65 conflict 64 16 1 4CJD PRO A 44 ? UNP A0ELI2 ILE 66 conflict 65 17 1 4CJD LYS A 45 ? UNP A0ELI2 THR 67 conflict 66 18 1 4CJD GLY A 46 ? UNP A0ELI2 ARG 68 conflict 67 19 1 4CJD ARG A 47 ? UNP A0ELI2 LYS 69 conflict 68 20 1 4CJD PRO A 48 ? UNP A0ELI2 THR 70 conflict 69 21 1 4CJD GLU A 83 ? UNP A0ELI2 ASP 105 conflict 104 22 1 4CJD ARG A 111 ? UNP A0ELI2 GLY 133 conflict 132 23 1 4CJD THR A 119 ? UNP A0ELI2 LYS 141 conflict 140 24 1 4CJD LYS A 123 ? UNP A0ELI2 GLN 145 conflict 144 25 1 4CJD GLU A 125 ? UNP A0ELI2 ALA 147 conflict 146 26 1 4CJD GLU A 128 ? UNP A0ELI2 ALA 150 conflict 149 27 1 4CJD GLY A 131 ? UNP A0ELI2 GLU 153 conflict 152 28 1 4CJD LYS A 194 ? UNP A0ELI2 ALA 216 conflict 215 29 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 7650 ? 1 MORE -77.8 ? 1 'SSA (A^2)' 22530 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 2_555 -y,x-y,z -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 8 ? GLY A 29 ? SER A 29 GLY A 50 1 ? 22 HELX_P HELX_P2 2 THR A 50 ? ASP A 57 ? THR A 71 ASP A 78 1 ? 8 HELX_P HELX_P3 3 GLY A 63 ? LYS A 114 ? GLY A 84 LYS A 135 1 ? 52 HELX_P HELX_P4 4 THR A 178 ? ASP A 188 ? THR A 199 ASP A 209 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id AA _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id AA _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 THR A 35 ? GLU A 40 ? THR A 56 GLU A 61 AA 2 GLN A 43 ? PRO A 48 ? GLN A 64 PRO A 69 # _pdbx_struct_sheet_hbond.sheet_id AA _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id GLU _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 40 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id GLU _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 61 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id GLN _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 43 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id GLN _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 64 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A IOD 1001 ? 3 'BINDING SITE FOR RESIDUE IOD A 1001' AC2 Software A IOD 1002 ? 3 'BINDING SITE FOR RESIDUE IOD A 1002' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 ASN A 23 ? ASN A 44 . ? 3_555 ? 2 AC1 3 ASN A 23 ? ASN A 44 . ? 2_555 ? 3 AC1 3 ASN A 23 ? ASN A 44 . ? 1_555 ? 4 AC2 3 ASN A 85 ? ASN A 106 . ? 2_555 ? 5 AC2 3 ASN A 85 ? ASN A 106 . ? 1_555 ? 6 AC2 3 ASN A 85 ? ASN A 106 . ? 3_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 2081 ? ? O A HOH 2087 ? ? 2.13 2 1 O A HOH 2035 ? ? O A HOH 2059 ? ? 2.14 3 1 O A HOH 2087 ? ? O A HOH 2091 ? ? 2.15 4 1 O A HOH 2020 ? ? O A HOH 2021 ? ? 2.17 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 2081 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 2088 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_555 _pdbx_validate_symm_contact.dist 2.17 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASP _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 209 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -67.59 _pdbx_validate_torsion.psi 4.46 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A IOD 1001 ? B IOD . 2 1 A IOD 1002 ? C IOD . 3 1 A IOD 1003 ? D IOD . 4 1 A IOD 1004 ? E IOD . 5 1 A HOH 2034 ? F HOH . 6 1 A HOH 2077 ? F HOH . # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 1.3629 6.2872 192.2606 0.0407 0.0272 0.2796 0.0188 0.0011 0.0320 1.2573 1.3739 1.2486 0.0776 -0.4166 -0.2558 -0.0341 -0.0148 0.0884 0.0472 -0.0859 -0.0650 0.0234 -0.0201 -0.0932 'X-RAY DIFFRACTION' 2 ? refined -2.1022 -8.0610 116.1676 1.6923 1.3171 0.6072 0.1033 0.0247 -0.0689 0.1222 0.0072 1.6896 0.0275 0.4263 0.0796 -0.0371 -0.2146 0.1191 0.1965 -0.2688 0.2034 0.7775 -0.0357 0.2310 'X-RAY DIFFRACTION' 3 ? refined -12.9936 -15.9615 21.3989 0.5918 1.2094 0.8443 -0.0076 -0.0128 -0.1648 3.3593 5.3301 3.3830 -0.6843 -0.0659 -0.8350 0.0674 0.2279 0.1434 -0.1330 0.3335 -0.8821 -0.0349 0.6461 -0.2883 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? ;CHAIN 'A' AND (RESID 27 THROUGH 125 ) ; 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? ;CHAIN 'A' AND (RESID 126 THROUGH 200 ) ; 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? ;CHAIN 'A' AND (RESID 201 THROUGH 210 ) ; # _pdbx_entry_details.entry_id 4CJD _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE UNIPROT SEQUENCE PROVIDED HEREIN (A0ELI2) DOES NOT MATCH WITH THE SEQUENCE OF THE CLONE CRYSTALLISED, WHICH CORRESPONDS TO THE NATURAL VARIANT 5 OF NADA AND WHICH AT THE MOMENT LACKS A GENBANK OR UNIPROT ENTRY. ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 22 ? A MET 1 2 1 Y 1 A LYS 23 ? A LYS 2 3 1 Y 1 A ASP 24 ? A ASP 3 4 1 Y 1 A ASN 25 ? A ASN 4 5 1 Y 1 A PRO 26 ? A PRO 5 6 1 Y 1 A ILE 138 ? A ILE 117 7 1 Y 1 A ALA 139 ? A ALA 118 8 1 Y 1 A THR 140 ? A THR 119 9 1 Y 1 A LYS 141 ? A LYS 120 10 1 Y 1 A ALA 142 ? A ALA 121 11 1 Y 1 A ASP 143 ? A ASP 122 12 1 Y 1 A LYS 144 ? A LYS 123 13 1 Y 1 A THR 145 ? A THR 124 14 1 Y 1 A GLU 146 ? A GLU 125 15 1 Y 1 A LEU 147 ? A LEU 126 16 1 Y 1 A ASP 148 ? A ASP 127 17 1 Y 1 A GLU 149 ? A GLU 128 18 1 Y 1 A VAL 150 ? A VAL 129 19 1 Y 1 A SER 151 ? A SER 130 20 1 Y 1 A GLY 152 ? A GLY 131 21 1 Y 1 A LYS 153 ? A LYS 132 22 1 Y 1 A VAL 154 ? A VAL 133 23 1 Y 1 A THR 155 ? A THR 134 24 1 Y 1 A ALA 156 ? A ALA 135 25 1 Y 1 A ASN 157 ? A ASN 136 26 1 Y 1 A GLU 158 ? A GLU 137 27 1 Y 1 A THR 159 ? A THR 138 28 1 Y 1 A ALA 160 ? A ALA 139 29 1 Y 1 A ILE 161 ? A ILE 140 30 1 Y 1 A GLY 162 ? A GLY 141 31 1 Y 1 A LYS 163 ? A LYS 142 32 1 Y 1 A LYS 164 ? A LYS 143 33 1 Y 1 A ALA 165 ? A ALA 144 34 1 Y 1 A ASN 166 ? A ASN 145 35 1 Y 1 A SER 167 ? A SER 146 36 1 Y 1 A ALA 168 ? A ALA 147 37 1 Y 1 A ASP 169 ? A ASP 148 38 1 Y 1 A VAL 170 ? A VAL 149 39 1 Y 1 A TYR 171 ? A TYR 150 40 1 Y 1 A THR 172 ? A THR 151 41 1 Y 1 A LYS 173 ? A LYS 152 42 1 Y 1 A ALA 174 ? A ALA 153 43 1 Y 1 A GLU 175 ? A GLU 154 44 1 Y 1 A VAL 176 ? A VAL 155 45 1 Y 1 A TYR 177 ? A TYR 156 46 1 Y 1 A THR 178 ? A THR 157 47 1 Y 1 A LYS 179 ? A LYS 158 48 1 Y 1 A GLN 180 ? A GLN 159 49 1 Y 1 A GLU 181 ? A GLU 160 50 1 Y 1 A SER 182 ? A SER 161 51 1 Y 1 A ASP 183 ? A ASP 162 52 1 Y 1 A ASN 184 ? A ASN 163 53 1 Y 1 A ARG 185 ? A ARG 164 54 1 Y 1 A PHE 186 ? A PHE 165 55 1 Y 1 A VAL 187 ? A VAL 166 56 1 Y 1 A LYS 188 ? A LYS 167 57 1 Y 1 A ILE 189 ? A ILE 168 58 1 Y 1 A GLY 190 ? A GLY 169 59 1 Y 1 A ASP 191 ? A ASP 170 60 1 Y 1 A ARG 192 ? A ARG 171 61 1 Y 1 A ILE 193 ? A ILE 172 62 1 Y 1 A GLY 194 ? A GLY 173 63 1 Y 1 A ASN 195 ? A ASN 174 64 1 Y 1 A LEU 196 ? A LEU 175 65 1 Y 1 A ASN 197 ? A ASN 176 66 1 Y 1 A THR 198 ? A THR 177 67 1 Y 1 A GLU 211 ? A GLU 190 68 1 Y 1 A LYS 212 ? A LYS 191 69 1 Y 1 A SER 213 ? A SER 192 70 1 Y 1 A VAL 214 ? A VAL 193 71 1 Y 1 A LYS 215 ? A LYS 194 72 1 Y 1 A ASP 216 ? A ASP 195 73 1 Y 1 A HIS 217 ? A HIS 196 74 1 Y 1 A GLY 218 ? A GLY 197 75 1 Y 1 A THR 219 ? A THR 198 76 1 Y 1 A ARG 220 ? A ARG 199 77 1 Y 1 A ALA 221 ? A ALA 200 78 1 Y 1 A SER 222 ? A SER 201 79 1 Y 1 A LYS 223 ? A LYS 202 80 1 Y 1 A HIS 224 ? A HIS 203 81 1 Y 1 A HIS 225 ? A HIS 204 82 1 Y 1 A HIS 226 ? A HIS 205 83 1 Y 1 A HIS 227 ? A HIS 206 84 1 Y 1 A HIS 228 ? A HIS 207 85 1 Y 1 A HIS 229 ? A HIS 208 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 ILE N N N N 147 ILE CA C N S 148 ILE C C N N 149 ILE O O N N 150 ILE CB C N S 151 ILE CG1 C N N 152 ILE CG2 C N N 153 ILE CD1 C N N 154 ILE OXT O N N 155 ILE H H N N 156 ILE H2 H N N 157 ILE HA H N N 158 ILE HB H N N 159 ILE HG12 H N N 160 ILE HG13 H N N 161 ILE HG21 H N N 162 ILE HG22 H N N 163 ILE HG23 H N N 164 ILE HD11 H N N 165 ILE HD12 H N N 166 ILE HD13 H N N 167 ILE HXT H N N 168 IOD I I N N 169 LEU N N N N 170 LEU CA C N S 171 LEU C C N N 172 LEU O O N N 173 LEU CB C N N 174 LEU CG C N N 175 LEU CD1 C N N 176 LEU CD2 C N N 177 LEU OXT O N N 178 LEU H H N N 179 LEU H2 H N N 180 LEU HA H N N 181 LEU HB2 H N N 182 LEU HB3 H N N 183 LEU HG H N N 184 LEU HD11 H N N 185 LEU HD12 H N N 186 LEU HD13 H N N 187 LEU HD21 H N N 188 LEU HD22 H N N 189 LEU HD23 H N N 190 LEU HXT H N N 191 LYS N N N N 192 LYS CA C N S 193 LYS C C N N 194 LYS O O N N 195 LYS CB C N N 196 LYS CG C N N 197 LYS CD C N N 198 LYS CE C N N 199 LYS NZ N N N 200 LYS OXT O N N 201 LYS H H N N 202 LYS H2 H N N 203 LYS HA H N N 204 LYS HB2 H N N 205 LYS HB3 H N N 206 LYS HG2 H N N 207 LYS HG3 H N N 208 LYS HD2 H N N 209 LYS HD3 H N N 210 LYS HE2 H N N 211 LYS HE3 H N N 212 LYS HZ1 H N N 213 LYS HZ2 H N N 214 LYS HZ3 H N N 215 LYS HXT H N N 216 MET N N N N 217 MET CA C N S 218 MET C C N N 219 MET O O N N 220 MET CB C N N 221 MET CG C N N 222 MET SD S N N 223 MET CE C N N 224 MET OXT O N N 225 MET H H N N 226 MET H2 H N N 227 MET HA H N N 228 MET HB2 H N N 229 MET HB3 H N N 230 MET HG2 H N N 231 MET HG3 H N N 232 MET HE1 H N N 233 MET HE2 H N N 234 MET HE3 H N N 235 MET HXT H N N 236 PHE N N N N 237 PHE CA C N S 238 PHE C C N N 239 PHE O O N N 240 PHE CB C N N 241 PHE CG C Y N 242 PHE CD1 C Y N 243 PHE CD2 C Y N 244 PHE CE1 C Y N 245 PHE CE2 C Y N 246 PHE CZ C Y N 247 PHE OXT O N N 248 PHE H H N N 249 PHE H2 H N N 250 PHE HA H N N 251 PHE HB2 H N N 252 PHE HB3 H N N 253 PHE HD1 H N N 254 PHE HD2 H N N 255 PHE HE1 H N N 256 PHE HE2 H N N 257 PHE HZ H N N 258 PHE HXT H N N 259 PRO N N N N 260 PRO CA C N S 261 PRO C C N N 262 PRO O O N N 263 PRO CB C N N 264 PRO CG C N N 265 PRO CD C N N 266 PRO OXT O N N 267 PRO H H N N 268 PRO HA H N N 269 PRO HB2 H N N 270 PRO HB3 H N N 271 PRO HG2 H N N 272 PRO HG3 H N N 273 PRO HD2 H N N 274 PRO HD3 H N N 275 PRO HXT H N N 276 SER N N N N 277 SER CA C N S 278 SER C C N N 279 SER O O N N 280 SER CB C N N 281 SER OG O N N 282 SER OXT O N N 283 SER H H N N 284 SER H2 H N N 285 SER HA H N N 286 SER HB2 H N N 287 SER HB3 H N N 288 SER HG H N N 289 SER HXT H N N 290 THR N N N N 291 THR CA C N S 292 THR C C N N 293 THR O O N N 294 THR CB C N R 295 THR OG1 O N N 296 THR CG2 C N N 297 THR OXT O N N 298 THR H H N N 299 THR H2 H N N 300 THR HA H N N 301 THR HB H N N 302 THR HG1 H N N 303 THR HG21 H N N 304 THR HG22 H N N 305 THR HG23 H N N 306 THR HXT H N N 307 TYR N N N N 308 TYR CA C N S 309 TYR C C N N 310 TYR O O N N 311 TYR CB C N N 312 TYR CG C Y N 313 TYR CD1 C Y N 314 TYR CD2 C Y N 315 TYR CE1 C Y N 316 TYR CE2 C Y N 317 TYR CZ C Y N 318 TYR OH O N N 319 TYR OXT O N N 320 TYR H H N N 321 TYR H2 H N N 322 TYR HA H N N 323 TYR HB2 H N N 324 TYR HB3 H N N 325 TYR HD1 H N N 326 TYR HD2 H N N 327 TYR HE1 H N N 328 TYR HE2 H N N 329 TYR HH H N N 330 TYR HXT H N N 331 VAL N N N N 332 VAL CA C N S 333 VAL C C N N 334 VAL O O N N 335 VAL CB C N N 336 VAL CG1 C N N 337 VAL CG2 C N N 338 VAL OXT O N N 339 VAL H H N N 340 VAL H2 H N N 341 VAL HA H N N 342 VAL HB H N N 343 VAL HG11 H N N 344 VAL HG12 H N N 345 VAL HG13 H N N 346 VAL HG21 H N N 347 VAL HG22 H N N 348 VAL HG23 H N N 349 VAL HXT H N N 350 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 HOH O H1 sing N N 137 HOH O H2 sing N N 138 ILE N CA sing N N 139 ILE N H sing N N 140 ILE N H2 sing N N 141 ILE CA C sing N N 142 ILE CA CB sing N N 143 ILE CA HA sing N N 144 ILE C O doub N N 145 ILE C OXT sing N N 146 ILE CB CG1 sing N N 147 ILE CB CG2 sing N N 148 ILE CB HB sing N N 149 ILE CG1 CD1 sing N N 150 ILE CG1 HG12 sing N N 151 ILE CG1 HG13 sing N N 152 ILE CG2 HG21 sing N N 153 ILE CG2 HG22 sing N N 154 ILE CG2 HG23 sing N N 155 ILE CD1 HD11 sing N N 156 ILE CD1 HD12 sing N N 157 ILE CD1 HD13 sing N N 158 ILE OXT HXT sing N N 159 LEU N CA sing N N 160 LEU N H sing N N 161 LEU N H2 sing N N 162 LEU CA C sing N N 163 LEU CA CB sing N N 164 LEU CA HA sing N N 165 LEU C O doub N N 166 LEU C OXT sing N N 167 LEU CB CG sing N N 168 LEU CB HB2 sing N N 169 LEU CB HB3 sing N N 170 LEU CG CD1 sing N N 171 LEU CG CD2 sing N N 172 LEU CG HG sing N N 173 LEU CD1 HD11 sing N N 174 LEU CD1 HD12 sing N N 175 LEU CD1 HD13 sing N N 176 LEU CD2 HD21 sing N N 177 LEU CD2 HD22 sing N N 178 LEU CD2 HD23 sing N N 179 LEU OXT HXT sing N N 180 LYS N CA sing N N 181 LYS N H sing N N 182 LYS N H2 sing N N 183 LYS CA C sing N N 184 LYS CA CB sing N N 185 LYS CA HA sing N N 186 LYS C O doub N N 187 LYS C OXT sing N N 188 LYS CB CG sing N N 189 LYS CB HB2 sing N N 190 LYS CB HB3 sing N N 191 LYS CG CD sing N N 192 LYS CG HG2 sing N N 193 LYS CG HG3 sing N N 194 LYS CD CE sing N N 195 LYS CD HD2 sing N N 196 LYS CD HD3 sing N N 197 LYS CE NZ sing N N 198 LYS CE HE2 sing N N 199 LYS CE HE3 sing N N 200 LYS NZ HZ1 sing N N 201 LYS NZ HZ2 sing N N 202 LYS NZ HZ3 sing N N 203 LYS OXT HXT sing N N 204 MET N CA sing N N 205 MET N H sing N N 206 MET N H2 sing N N 207 MET CA C sing N N 208 MET CA CB sing N N 209 MET CA HA sing N N 210 MET C O doub N N 211 MET C OXT sing N N 212 MET CB CG sing N N 213 MET CB HB2 sing N N 214 MET CB HB3 sing N N 215 MET CG SD sing N N 216 MET CG HG2 sing N N 217 MET CG HG3 sing N N 218 MET SD CE sing N N 219 MET CE HE1 sing N N 220 MET CE HE2 sing N N 221 MET CE HE3 sing N N 222 MET OXT HXT sing N N 223 PHE N CA sing N N 224 PHE N H sing N N 225 PHE N H2 sing N N 226 PHE CA C sing N N 227 PHE CA CB sing N N 228 PHE CA HA sing N N 229 PHE C O doub N N 230 PHE C OXT sing N N 231 PHE CB CG sing N N 232 PHE CB HB2 sing N N 233 PHE CB HB3 sing N N 234 PHE CG CD1 doub Y N 235 PHE CG CD2 sing Y N 236 PHE CD1 CE1 sing Y N 237 PHE CD1 HD1 sing N N 238 PHE CD2 CE2 doub Y N 239 PHE CD2 HD2 sing N N 240 PHE CE1 CZ doub Y N 241 PHE CE1 HE1 sing N N 242 PHE CE2 CZ sing Y N 243 PHE CE2 HE2 sing N N 244 PHE CZ HZ sing N N 245 PHE OXT HXT sing N N 246 PRO N CA sing N N 247 PRO N CD sing N N 248 PRO N H sing N N 249 PRO CA C sing N N 250 PRO CA CB sing N N 251 PRO CA HA sing N N 252 PRO C O doub N N 253 PRO C OXT sing N N 254 PRO CB CG sing N N 255 PRO CB HB2 sing N N 256 PRO CB HB3 sing N N 257 PRO CG CD sing N N 258 PRO CG HG2 sing N N 259 PRO CG HG3 sing N N 260 PRO CD HD2 sing N N 261 PRO CD HD3 sing N N 262 PRO OXT HXT sing N N 263 SER N CA sing N N 264 SER N H sing N N 265 SER N H2 sing N N 266 SER CA C sing N N 267 SER CA CB sing N N 268 SER CA HA sing N N 269 SER C O doub N N 270 SER C OXT sing N N 271 SER CB OG sing N N 272 SER CB HB2 sing N N 273 SER CB HB3 sing N N 274 SER OG HG sing N N 275 SER OXT HXT sing N N 276 THR N CA sing N N 277 THR N H sing N N 278 THR N H2 sing N N 279 THR CA C sing N N 280 THR CA CB sing N N 281 THR CA HA sing N N 282 THR C O doub N N 283 THR C OXT sing N N 284 THR CB OG1 sing N N 285 THR CB CG2 sing N N 286 THR CB HB sing N N 287 THR OG1 HG1 sing N N 288 THR CG2 HG21 sing N N 289 THR CG2 HG22 sing N N 290 THR CG2 HG23 sing N N 291 THR OXT HXT sing N N 292 TYR N CA sing N N 293 TYR N H sing N N 294 TYR N H2 sing N N 295 TYR CA C sing N N 296 TYR CA CB sing N N 297 TYR CA HA sing N N 298 TYR C O doub N N 299 TYR C OXT sing N N 300 TYR CB CG sing N N 301 TYR CB HB2 sing N N 302 TYR CB HB3 sing N N 303 TYR CG CD1 doub Y N 304 TYR CG CD2 sing Y N 305 TYR CD1 CE1 sing Y N 306 TYR CD1 HD1 sing N N 307 TYR CD2 CE2 doub Y N 308 TYR CD2 HD2 sing N N 309 TYR CE1 CZ doub Y N 310 TYR CE1 HE1 sing N N 311 TYR CE2 CZ sing Y N 312 TYR CE2 HE2 sing N N 313 TYR CZ OH sing N N 314 TYR OH HH sing N N 315 TYR OXT HXT sing N N 316 VAL N CA sing N N 317 VAL N H sing N N 318 VAL N H2 sing N N 319 VAL CA C sing N N 320 VAL CA CB sing N N 321 VAL CA HA sing N N 322 VAL C O doub N N 323 VAL C OXT sing N N 324 VAL CB CG1 sing N N 325 VAL CB CG2 sing N N 326 VAL CB HB sing N N 327 VAL CG1 HG11 sing N N 328 VAL CG1 HG12 sing N N 329 VAL CG1 HG13 sing N N 330 VAL CG2 HG21 sing N N 331 VAL CG2 HG22 sing N N 332 VAL CG2 HG23 sing N N 333 VAL OXT HXT sing N N 334 # _atom_sites.entry_id 4CJD _atom_sites.fract_transf_matrix[1][1] 0.019521 _atom_sites.fract_transf_matrix[1][2] 0.011270 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022541 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.001730 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C I N O # loop_