data_4CZ7 # _entry.id 4CZ7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.308 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4CZ7 PDBE EBI-59670 WWPDB D_1290059670 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 4CZ5 unspecified 'TRUNCATED TETRAMERIZATION DOMAIN OF ZEBRAFISH P53 (CRYSTAL FORM I)' PDB 4CZ6 unspecified 'TRUNCATED TETRAMERIZATION DOMAIN OF ZEBRAFISH P53 (CRYSTAL FORM II)' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4CZ7 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2014-04-16 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # _audit_author.name 'Joerger, A.C.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Tracing the Evolution of the P53 Tetramerization Domain' _citation.journal_abbrev Structure _citation.journal_volume 22 _citation.page_first 1301 _citation.page_last ? _citation.year 2014 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25185827 _citation.pdbx_database_id_DOI 10.1016/J.STR.2014.07.010 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Joerger, A.C.' 1 ? primary 'Wilcken, R.' 2 ? primary 'Andreeva, A.' 3 ? # _cell.entry_id 4CZ7 _cell.length_a 71.734 _cell.length_b 45.717 _cell.length_c 55.486 _cell.angle_alpha 90.00 _cell.angle_beta 92.60 _cell.angle_gamma 90.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CZ7 _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'CELLULAR TUMOR ANTIGEN P53' 3799.270 6 ? ? 'TRUNCATED TETRAMERIZATION DOMAIN, RESIDUES 302-331' ? 2 non-polymer syn 'PHOSPHATE ION' 94.971 3 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 4 water nat water 18.015 140 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGSEEIFTLQVRGRERYEILKKLNDSLELSDVV _entity_poly.pdbx_seq_one_letter_code_can GGSEEIFTLQVRGRERYEILKKLNDSLELSDVV _entity_poly.pdbx_strand_id A,B,C,D,E,F _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLY n 1 3 SER n 1 4 GLU n 1 5 GLU n 1 6 ILE n 1 7 PHE n 1 8 THR n 1 9 LEU n 1 10 GLN n 1 11 VAL n 1 12 ARG n 1 13 GLY n 1 14 ARG n 1 15 GLU n 1 16 ARG n 1 17 TYR n 1 18 GLU n 1 19 ILE n 1 20 LEU n 1 21 LYS n 1 22 LYS n 1 23 LEU n 1 24 ASN n 1 25 ASP n 1 26 SER n 1 27 LEU n 1 28 GLU n 1 29 LEU n 1 30 SER n 1 31 ASP n 1 32 VAL n 1 33 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ZEBRAFISH _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'DANIO RERIO' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 7955 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code G1K2L5_DANRE _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession G1K2L5 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4CZ7 A 4 ? 33 ? G1K2L5 302 ? 331 ? 302 331 2 1 4CZ7 B 4 ? 33 ? G1K2L5 302 ? 331 ? 302 331 3 1 4CZ7 C 4 ? 33 ? G1K2L5 302 ? 331 ? 302 331 4 1 4CZ7 D 4 ? 33 ? G1K2L5 302 ? 331 ? 302 331 5 1 4CZ7 E 4 ? 33 ? G1K2L5 302 ? 331 ? 302 331 6 1 4CZ7 F 4 ? 33 ? G1K2L5 302 ? 331 ? 302 331 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4CZ7 GLY A 1 ? UNP G1K2L5 ? ? 'expression tag' 299 1 1 4CZ7 GLY A 2 ? UNP G1K2L5 ? ? 'expression tag' 300 2 1 4CZ7 SER A 3 ? UNP G1K2L5 ? ? 'expression tag' 301 3 2 4CZ7 GLY B 1 ? UNP G1K2L5 ? ? 'expression tag' 299 4 2 4CZ7 GLY B 2 ? UNP G1K2L5 ? ? 'expression tag' 300 5 2 4CZ7 SER B 3 ? UNP G1K2L5 ? ? 'expression tag' 301 6 3 4CZ7 GLY C 1 ? UNP G1K2L5 ? ? 'expression tag' 299 7 3 4CZ7 GLY C 2 ? UNP G1K2L5 ? ? 'expression tag' 300 8 3 4CZ7 SER C 3 ? UNP G1K2L5 ? ? 'expression tag' 301 9 4 4CZ7 GLY D 1 ? UNP G1K2L5 ? ? 'expression tag' 299 10 4 4CZ7 GLY D 2 ? UNP G1K2L5 ? ? 'expression tag' 300 11 4 4CZ7 SER D 3 ? UNP G1K2L5 ? ? 'expression tag' 301 12 5 4CZ7 GLY E 1 ? UNP G1K2L5 ? ? 'expression tag' 299 13 5 4CZ7 GLY E 2 ? UNP G1K2L5 ? ? 'expression tag' 300 14 5 4CZ7 SER E 3 ? UNP G1K2L5 ? ? 'expression tag' 301 15 6 4CZ7 GLY F 1 ? UNP G1K2L5 ? ? 'expression tag' 299 16 6 4CZ7 GLY F 2 ? UNP G1K2L5 ? ? 'expression tag' 300 17 6 4CZ7 SER F 3 ? UNP G1K2L5 ? ? 'expression tag' 301 18 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4CZ7 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2 _exptl_crystal.density_percent_sol 38 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;SITTING DROP VAPOR DIFFUSION AT 20 DEGREE C; PROTEIN SOLUTION: 17 MG/ML IN 20 MM TRIS PH 7.5, 50 MM NACL, 5 MM DTT; CRYSTALLIZATION BUFFER: 1.8 M SODIUM/POTASSIUM PHOSPHATE, PH 5.0. ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.8266 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I03' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I03 _diffrn_source.pdbx_wavelength 0.8266 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4CZ7 _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 27.70 _reflns.d_resolution_high 1.10 _reflns.number_obs 68831 _reflns.number_all ? _reflns.percent_possible_obs 94.8 _reflns.pdbx_Rmerge_I_obs 0.06 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 12.10 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.5 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.10 _reflns_shell.d_res_low 1.16 _reflns_shell.percent_possible_all 87.4 _reflns_shell.Rmerge_I_obs 0.17 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 6.50 _reflns_shell.pdbx_redundancy 3.3 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4CZ7 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 65375 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 27.70 _refine.ls_d_res_high 1.10 _refine.ls_percent_reflns_obs 94.49 _refine.ls_R_factor_obs 0.14415 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.14298 _refine.ls_R_factor_R_free 0.16588 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 3456 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.972 _refine.correlation_coeff_Fo_to_Fc_free 0.967 _refine.B_iso_mean 12.823 _refine.aniso_B[1][1] -0.04 _refine.aniso_B[2][2] 0.39 _refine.aniso_B[3][3] -0.41 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.64 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.031 _refine.pdbx_overall_ESU_R_Free 0.031 _refine.overall_SU_ML 0.018 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 0.789 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1541 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 21 _refine_hist.number_atoms_solvent 140 _refine_hist.number_atoms_total 1702 _refine_hist.d_res_high 1.10 _refine_hist.d_res_low 27.70 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.008 0.019 ? 1641 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 1660 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.240 2.029 ? 2214 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.689 3.000 ? 3836 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.761 5.000 ? 202 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 30.902 24.545 ? 88 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 10.431 15.000 ? 354 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 15.480 15.000 ? 18 'X-RAY DIFFRACTION' ? r_chiral_restr 0.075 0.200 ? 260 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 1795 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 343 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.972 0.973 ? 758 'X-RAY DIFFRACTION' ? r_mcbond_other 0.969 0.972 ? 757 'X-RAY DIFFRACTION' ? r_mcangle_it 1.350 1.461 ? 943 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 1.604 1.364 ? 882 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 1.480 3.000 ? 3298 'X-RAY DIFFRACTION' ? r_sphericity_free 27.047 5.000 ? 32 'X-RAY DIFFRACTION' ? r_sphericity_bonded 7.656 5.000 ? 3395 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.100 _refine_ls_shell.d_res_low 1.129 _refine_ls_shell.number_reflns_R_work 4356 _refine_ls_shell.R_factor_R_work 0.131 _refine_ls_shell.percent_reflns_obs 85.60 _refine_ls_shell.R_factor_R_free 0.157 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 244 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 4CZ7 _struct.title 'Truncated tetramerization domain of zebrafish p53 (crystal form III)' _struct.pdbx_descriptor 'CELLULAR TUMOR ANTIGEN P53' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4CZ7 _struct_keywords.pdbx_keywords 'CELL CYCLE' _struct_keywords.text 'CELL CYCLE, TUMOR SUPPRESSOR, TRANSCRIPTION FACTOR PROTEIN EVOLUTION, DANIO RERIO' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 2 ? H N N 2 ? I N N 3 ? J N N 2 ? K N N 4 ? L N N 4 ? M N N 4 ? N N N 4 ? O N N 4 ? P N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 13 ? ASP A 31 ? GLY A 311 ASP A 329 1 ? 19 HELX_P HELX_P2 2 GLY B 13 ? ASP B 31 ? GLY B 311 ASP B 329 1 ? 19 HELX_P HELX_P3 3 GLY C 13 ? SER C 30 ? GLY C 311 SER C 328 1 ? 18 HELX_P HELX_P4 4 GLY D 13 ? ASP D 31 ? GLY D 311 ASP D 329 1 ? 19 HELX_P HELX_P5 5 GLY E 13 ? GLU E 28 ? GLY E 311 GLU E 326 1 ? 16 HELX_P HELX_P6 6 GLY F 13 ? ASP F 31 ? GLY F 311 ASP F 329 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 2 ? CA ? 2 ? EA ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel CA 1 2 ? anti-parallel EA 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 ILE A 6 ? ARG A 12 ? ILE A 304 ARG A 310 AA 2 ILE B 6 ? ARG B 12 ? ILE B 304 ARG B 310 CA 1 ILE C 6 ? ARG C 12 ? ILE C 304 ARG C 310 CA 2 ILE D 6 ? ARG D 12 ? ILE D 304 ARG D 310 EA 1 ILE E 6 ? ARG E 12 ? ILE E 304 ARG E 310 EA 2 ILE F 6 ? ARG F 12 ? ILE F 304 ARG F 310 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N VAL A 11 ? N VAL A 309 O PHE B 7 ? O PHE B 305 CA 1 2 N VAL C 11 ? N VAL C 309 O PHE D 7 ? O PHE D 305 EA 1 2 N VAL E 11 ? N VAL E 309 O PHE F 7 ? O PHE F 305 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE PO4 C 1332' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE PO4 E 1330' AC3 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE PO4 D 1332' AC4 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE GOL D 1333' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 GLU C 4 ? GLU C 302 . ? 1_555 ? 2 AC1 5 GLU C 5 ? GLU C 303 . ? 1_555 ? 3 AC1 5 HOH M . ? HOH C 2032 . ? 1_555 ? 4 AC1 5 GLY D 13 ? GLY D 311 . ? 1_555 ? 5 AC1 5 PO4 H . ? PO4 D 1332 . ? 1_555 ? 6 AC2 4 LYS D 22 ? LYS D 320 . ? 1_555 ? 7 AC2 4 TYR E 17 ? TYR E 315 . ? 1_555 ? 8 AC2 4 LYS E 21 ? LYS E 319 . ? 1_555 ? 9 AC2 4 HOH O . ? HOH E 2036 . ? 1_555 ? 10 AC3 5 PO4 G . ? PO4 C 1332 . ? 1_555 ? 11 AC3 5 ARG D 12 ? ARG D 310 . ? 1_555 ? 12 AC3 5 GLY D 13 ? GLY D 311 . ? 1_555 ? 13 AC3 5 ARG D 16 ? ARG D 314 . ? 1_555 ? 14 AC3 5 HOH P . ? HOH F 2021 . ? 3_455 ? 15 AC4 8 THR C 8 ? THR C 306 . ? 1_555 ? 16 AC4 8 GLN C 10 ? GLN C 308 . ? 1_555 ? 17 AC4 8 HOH M . ? HOH C 2004 . ? 1_555 ? 18 AC4 8 LYS D 21 ? LYS D 319 . ? 1_555 ? 19 AC4 8 ASN D 24 ? ASN D 322 . ? 1_555 ? 20 AC4 8 ASP D 25 ? ASP D 323 . ? 1_555 ? 21 AC4 8 HOH N . ? HOH D 2014 . ? 1_555 ? 22 AC4 8 ASP E 25 ? ASP E 323 . ? 1_555 ? # _database_PDB_matrix.entry_id 4CZ7 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4CZ7 _atom_sites.fract_transf_matrix[1][1] 0.013940 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000633 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021874 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018041 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 299 ? ? ? A . n A 1 2 GLY 2 300 ? ? ? A . n A 1 3 SER 3 301 ? ? ? A . n A 1 4 GLU 4 302 302 GLU GLU A . n A 1 5 GLU 5 303 303 GLU GLU A . n A 1 6 ILE 6 304 304 ILE ILE A . n A 1 7 PHE 7 305 305 PHE PHE A . n A 1 8 THR 8 306 306 THR THR A . n A 1 9 LEU 9 307 307 LEU LEU A . n A 1 10 GLN 10 308 308 GLN GLN A . n A 1 11 VAL 11 309 309 VAL VAL A . n A 1 12 ARG 12 310 310 ARG ARG A . n A 1 13 GLY 13 311 311 GLY GLY A . n A 1 14 ARG 14 312 312 ARG ARG A . n A 1 15 GLU 15 313 313 GLU GLU A . n A 1 16 ARG 16 314 314 ARG ARG A . n A 1 17 TYR 17 315 315 TYR TYR A . n A 1 18 GLU 18 316 316 GLU GLU A . n A 1 19 ILE 19 317 317 ILE ILE A . n A 1 20 LEU 20 318 318 LEU LEU A . n A 1 21 LYS 21 319 319 LYS LYS A . n A 1 22 LYS 22 320 320 LYS LYS A . n A 1 23 LEU 23 321 321 LEU LEU A . n A 1 24 ASN 24 322 322 ASN ASN A . n A 1 25 ASP 25 323 323 ASP ASP A . n A 1 26 SER 26 324 324 SER SER A . n A 1 27 LEU 27 325 325 LEU LEU A . n A 1 28 GLU 28 326 326 GLU GLU A . n A 1 29 LEU 29 327 327 LEU LEU A . n A 1 30 SER 30 328 328 SER SER A . n A 1 31 ASP 31 329 329 ASP ASP A . n A 1 32 VAL 32 330 330 VAL VAL A . n A 1 33 VAL 33 331 331 VAL VAL A . n B 1 1 GLY 1 299 ? ? ? B . n B 1 2 GLY 2 300 300 GLY GLY B . n B 1 3 SER 3 301 301 SER SER B . n B 1 4 GLU 4 302 302 GLU GLU B . n B 1 5 GLU 5 303 303 GLU GLU B . n B 1 6 ILE 6 304 304 ILE ILE B . n B 1 7 PHE 7 305 305 PHE PHE B . n B 1 8 THR 8 306 306 THR THR B . n B 1 9 LEU 9 307 307 LEU LEU B . n B 1 10 GLN 10 308 308 GLN GLN B . n B 1 11 VAL 11 309 309 VAL VAL B . n B 1 12 ARG 12 310 310 ARG ARG B . n B 1 13 GLY 13 311 311 GLY GLY B . n B 1 14 ARG 14 312 312 ARG ARG B . n B 1 15 GLU 15 313 313 GLU GLU B . n B 1 16 ARG 16 314 314 ARG ARG B . n B 1 17 TYR 17 315 315 TYR TYR B . n B 1 18 GLU 18 316 316 GLU GLU B . n B 1 19 ILE 19 317 317 ILE ILE B . n B 1 20 LEU 20 318 318 LEU LEU B . n B 1 21 LYS 21 319 319 LYS LYS B . n B 1 22 LYS 22 320 320 LYS LYS B . n B 1 23 LEU 23 321 321 LEU LEU B . n B 1 24 ASN 24 322 322 ASN ASN B . n B 1 25 ASP 25 323 323 ASP ASP B . n B 1 26 SER 26 324 324 SER SER B . n B 1 27 LEU 27 325 325 LEU LEU B . n B 1 28 GLU 28 326 326 GLU GLU B . n B 1 29 LEU 29 327 327 LEU LEU B . n B 1 30 SER 30 328 328 SER SER B . n B 1 31 ASP 31 329 329 ASP ASP B . n B 1 32 VAL 32 330 330 VAL VAL B . n B 1 33 VAL 33 331 331 VAL VAL B . n C 1 1 GLY 1 299 ? ? ? C . n C 1 2 GLY 2 300 ? ? ? C . n C 1 3 SER 3 301 301 SER SER C . n C 1 4 GLU 4 302 302 GLU GLU C . n C 1 5 GLU 5 303 303 GLU GLU C . n C 1 6 ILE 6 304 304 ILE ILE C . n C 1 7 PHE 7 305 305 PHE PHE C . n C 1 8 THR 8 306 306 THR THR C . n C 1 9 LEU 9 307 307 LEU LEU C . n C 1 10 GLN 10 308 308 GLN GLN C . n C 1 11 VAL 11 309 309 VAL VAL C . n C 1 12 ARG 12 310 310 ARG ARG C . n C 1 13 GLY 13 311 311 GLY GLY C . n C 1 14 ARG 14 312 312 ARG ARG C . n C 1 15 GLU 15 313 313 GLU GLU C . n C 1 16 ARG 16 314 314 ARG ARG C . n C 1 17 TYR 17 315 315 TYR TYR C . n C 1 18 GLU 18 316 316 GLU GLU C . n C 1 19 ILE 19 317 317 ILE ILE C . n C 1 20 LEU 20 318 318 LEU LEU C . n C 1 21 LYS 21 319 319 LYS LYS C . n C 1 22 LYS 22 320 320 LYS LYS C . n C 1 23 LEU 23 321 321 LEU LEU C . n C 1 24 ASN 24 322 322 ASN ASN C . n C 1 25 ASP 25 323 323 ASP ASP C . n C 1 26 SER 26 324 324 SER SER C . n C 1 27 LEU 27 325 325 LEU LEU C . n C 1 28 GLU 28 326 326 GLU GLU C . n C 1 29 LEU 29 327 327 LEU LEU C . n C 1 30 SER 30 328 328 SER SER C . n C 1 31 ASP 31 329 329 ASP ASP C . n C 1 32 VAL 32 330 330 VAL VAL C . n C 1 33 VAL 33 331 331 VAL VAL C . n D 1 1 GLY 1 299 ? ? ? D . n D 1 2 GLY 2 300 ? ? ? D . n D 1 3 SER 3 301 301 SER SER D . n D 1 4 GLU 4 302 302 GLU GLU D . n D 1 5 GLU 5 303 303 GLU GLU D . n D 1 6 ILE 6 304 304 ILE ILE D . n D 1 7 PHE 7 305 305 PHE PHE D . n D 1 8 THR 8 306 306 THR THR D . n D 1 9 LEU 9 307 307 LEU LEU D . n D 1 10 GLN 10 308 308 GLN GLN D . n D 1 11 VAL 11 309 309 VAL VAL D . n D 1 12 ARG 12 310 310 ARG ARG D . n D 1 13 GLY 13 311 311 GLY GLY D . n D 1 14 ARG 14 312 312 ARG ARG D . n D 1 15 GLU 15 313 313 GLU GLU D . n D 1 16 ARG 16 314 314 ARG ARG D . n D 1 17 TYR 17 315 315 TYR TYR D . n D 1 18 GLU 18 316 316 GLU GLU D . n D 1 19 ILE 19 317 317 ILE ILE D . n D 1 20 LEU 20 318 318 LEU LEU D . n D 1 21 LYS 21 319 319 LYS LYS D . n D 1 22 LYS 22 320 320 LYS LYS D . n D 1 23 LEU 23 321 321 LEU LEU D . n D 1 24 ASN 24 322 322 ASN ASN D . n D 1 25 ASP 25 323 323 ASP ASP D . n D 1 26 SER 26 324 324 SER SER D . n D 1 27 LEU 27 325 325 LEU LEU D . n D 1 28 GLU 28 326 326 GLU GLU D . n D 1 29 LEU 29 327 327 LEU LEU D . n D 1 30 SER 30 328 328 SER SER D . n D 1 31 ASP 31 329 329 ASP ASP D . n D 1 32 VAL 32 330 330 VAL VAL D . n D 1 33 VAL 33 331 331 VAL VAL D . n E 1 1 GLY 1 299 ? ? ? E . n E 1 2 GLY 2 300 300 GLY GLY E . n E 1 3 SER 3 301 301 SER SER E . n E 1 4 GLU 4 302 302 GLU GLU E . n E 1 5 GLU 5 303 303 GLU GLU E . n E 1 6 ILE 6 304 304 ILE ILE E . n E 1 7 PHE 7 305 305 PHE PHE E . n E 1 8 THR 8 306 306 THR THR E . n E 1 9 LEU 9 307 307 LEU LEU E . n E 1 10 GLN 10 308 308 GLN GLN E . n E 1 11 VAL 11 309 309 VAL VAL E . n E 1 12 ARG 12 310 310 ARG ARG E . n E 1 13 GLY 13 311 311 GLY GLY E . n E 1 14 ARG 14 312 312 ARG ARG E . n E 1 15 GLU 15 313 313 GLU GLU E . n E 1 16 ARG 16 314 314 ARG ARG E . n E 1 17 TYR 17 315 315 TYR TYR E . n E 1 18 GLU 18 316 316 GLU GLU E . n E 1 19 ILE 19 317 317 ILE ILE E . n E 1 20 LEU 20 318 318 LEU LEU E . n E 1 21 LYS 21 319 319 LYS LYS E . n E 1 22 LYS 22 320 320 LYS LYS E . n E 1 23 LEU 23 321 321 LEU LEU E . n E 1 24 ASN 24 322 322 ASN ASN E . n E 1 25 ASP 25 323 323 ASP ASP E . n E 1 26 SER 26 324 324 SER SER E . n E 1 27 LEU 27 325 325 LEU LEU E . n E 1 28 GLU 28 326 326 GLU GLU E . n E 1 29 LEU 29 327 327 LEU LEU E . n E 1 30 SER 30 328 328 SER SER E . n E 1 31 ASP 31 329 329 ASP ASP E . n E 1 32 VAL 32 330 ? ? ? E . n E 1 33 VAL 33 331 ? ? ? E . n F 1 1 GLY 1 299 ? ? ? F . n F 1 2 GLY 2 300 ? ? ? F . n F 1 3 SER 3 301 301 SER SER F . n F 1 4 GLU 4 302 302 GLU GLU F . n F 1 5 GLU 5 303 303 GLU GLU F . n F 1 6 ILE 6 304 304 ILE ILE F . n F 1 7 PHE 7 305 305 PHE PHE F . n F 1 8 THR 8 306 306 THR THR F . n F 1 9 LEU 9 307 307 LEU LEU F . n F 1 10 GLN 10 308 308 GLN GLN F . n F 1 11 VAL 11 309 309 VAL VAL F . n F 1 12 ARG 12 310 310 ARG ARG F . n F 1 13 GLY 13 311 311 GLY GLY F . n F 1 14 ARG 14 312 312 ARG ARG F . n F 1 15 GLU 15 313 313 GLU GLU F . n F 1 16 ARG 16 314 314 ARG ARG F . n F 1 17 TYR 17 315 315 TYR TYR F . n F 1 18 GLU 18 316 316 GLU GLU F . n F 1 19 ILE 19 317 317 ILE ILE F . n F 1 20 LEU 20 318 318 LEU LEU F . n F 1 21 LYS 21 319 319 LYS LYS F . n F 1 22 LYS 22 320 320 LYS LYS F . n F 1 23 LEU 23 321 321 LEU LEU F . n F 1 24 ASN 24 322 322 ASN ASN F . n F 1 25 ASP 25 323 323 ASP ASP F . n F 1 26 SER 26 324 324 SER SER F . n F 1 27 LEU 27 325 325 LEU LEU F . n F 1 28 GLU 28 326 326 GLU GLU F . n F 1 29 LEU 29 327 327 LEU LEU F . n F 1 30 SER 30 328 328 SER SER F . n F 1 31 ASP 31 329 329 ASP ASP F . n F 1 32 VAL 32 330 330 VAL VAL F . n F 1 33 VAL 33 331 331 VAL VAL F . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 PO4 1 1332 1332 PO4 PO4 C . H 2 PO4 1 1332 1332 PO4 PO4 D . I 3 GOL 1 1333 1333 GOL GOL D . J 2 PO4 1 1330 1330 PO4 PO4 E . K 4 HOH 1 2001 2001 HOH HOH A . K 4 HOH 2 2002 2002 HOH HOH A . K 4 HOH 3 2003 2003 HOH HOH A . K 4 HOH 4 2004 2004 HOH HOH A . K 4 HOH 5 2005 2005 HOH HOH A . K 4 HOH 6 2006 2006 HOH HOH A . K 4 HOH 7 2007 2007 HOH HOH A . K 4 HOH 8 2008 2008 HOH HOH A . K 4 HOH 9 2009 2009 HOH HOH A . K 4 HOH 10 2010 2010 HOH HOH A . K 4 HOH 11 2011 2011 HOH HOH A . K 4 HOH 12 2012 2012 HOH HOH A . K 4 HOH 13 2013 2013 HOH HOH A . K 4 HOH 14 2014 2014 HOH HOH A . K 4 HOH 15 2015 2015 HOH HOH A . K 4 HOH 16 2016 2016 HOH HOH A . K 4 HOH 17 2017 2017 HOH HOH A . L 4 HOH 1 2001 2001 HOH HOH B . L 4 HOH 2 2002 2002 HOH HOH B . L 4 HOH 3 2003 2003 HOH HOH B . L 4 HOH 4 2004 2004 HOH HOH B . L 4 HOH 5 2005 2005 HOH HOH B . L 4 HOH 6 2006 2006 HOH HOH B . L 4 HOH 7 2007 2007 HOH HOH B . L 4 HOH 8 2008 2008 HOH HOH B . L 4 HOH 9 2009 2009 HOH HOH B . L 4 HOH 10 2010 2010 HOH HOH B . L 4 HOH 11 2011 2011 HOH HOH B . L 4 HOH 12 2012 2012 HOH HOH B . L 4 HOH 13 2013 2013 HOH HOH B . M 4 HOH 1 2001 2001 HOH HOH C . M 4 HOH 2 2002 2002 HOH HOH C . M 4 HOH 3 2003 2003 HOH HOH C . M 4 HOH 4 2004 2004 HOH HOH C . M 4 HOH 5 2005 2005 HOH HOH C . M 4 HOH 6 2006 2006 HOH HOH C . M 4 HOH 7 2007 2007 HOH HOH C . M 4 HOH 8 2008 2008 HOH HOH C . M 4 HOH 9 2009 2009 HOH HOH C . M 4 HOH 10 2010 2010 HOH HOH C . M 4 HOH 11 2011 2011 HOH HOH C . M 4 HOH 12 2012 2012 HOH HOH C . M 4 HOH 13 2013 2013 HOH HOH C . M 4 HOH 14 2014 2014 HOH HOH C . M 4 HOH 15 2015 2015 HOH HOH C . M 4 HOH 16 2016 2016 HOH HOH C . M 4 HOH 17 2017 2017 HOH HOH C . M 4 HOH 18 2018 2018 HOH HOH C . M 4 HOH 19 2019 2019 HOH HOH C . M 4 HOH 20 2020 2020 HOH HOH C . M 4 HOH 21 2021 2021 HOH HOH C . M 4 HOH 22 2022 2022 HOH HOH C . M 4 HOH 23 2023 2023 HOH HOH C . M 4 HOH 24 2024 2024 HOH HOH C . M 4 HOH 25 2025 2025 HOH HOH C . M 4 HOH 26 2026 2026 HOH HOH C . M 4 HOH 27 2027 2027 HOH HOH C . M 4 HOH 28 2028 2028 HOH HOH C . M 4 HOH 29 2029 2029 HOH HOH C . M 4 HOH 30 2030 2030 HOH HOH C . M 4 HOH 31 2031 2031 HOH HOH C . M 4 HOH 32 2032 2032 HOH HOH C . N 4 HOH 1 2001 2001 HOH HOH D . N 4 HOH 2 2002 2002 HOH HOH D . N 4 HOH 3 2003 2003 HOH HOH D . N 4 HOH 4 2004 2004 HOH HOH D . N 4 HOH 5 2005 2005 HOH HOH D . N 4 HOH 6 2006 2006 HOH HOH D . N 4 HOH 7 2007 2007 HOH HOH D . N 4 HOH 8 2008 2008 HOH HOH D . N 4 HOH 9 2009 2009 HOH HOH D . N 4 HOH 10 2010 2010 HOH HOH D . N 4 HOH 11 2011 2011 HOH HOH D . N 4 HOH 12 2012 2012 HOH HOH D . N 4 HOH 13 2013 2013 HOH HOH D . N 4 HOH 14 2014 2014 HOH HOH D . N 4 HOH 15 2015 2015 HOH HOH D . N 4 HOH 16 2016 2016 HOH HOH D . N 4 HOH 17 2017 2017 HOH HOH D . N 4 HOH 18 2018 2018 HOH HOH D . N 4 HOH 19 2019 2019 HOH HOH D . N 4 HOH 20 2020 2020 HOH HOH D . O 4 HOH 1 2001 2001 HOH HOH E . O 4 HOH 2 2002 2002 HOH HOH E . O 4 HOH 3 2003 2003 HOH HOH E . O 4 HOH 4 2004 2004 HOH HOH E . O 4 HOH 5 2005 2005 HOH HOH E . O 4 HOH 6 2006 2006 HOH HOH E . O 4 HOH 7 2007 2007 HOH HOH E . O 4 HOH 8 2008 2008 HOH HOH E . O 4 HOH 9 2009 2009 HOH HOH E . O 4 HOH 10 2010 2010 HOH HOH E . O 4 HOH 11 2011 2011 HOH HOH E . O 4 HOH 12 2012 2012 HOH HOH E . O 4 HOH 13 2013 2013 HOH HOH E . O 4 HOH 14 2014 2014 HOH HOH E . O 4 HOH 15 2015 2015 HOH HOH E . O 4 HOH 16 2016 2016 HOH HOH E . O 4 HOH 17 2017 2017 HOH HOH E . O 4 HOH 18 2018 2018 HOH HOH E . O 4 HOH 19 2019 2019 HOH HOH E . O 4 HOH 20 2020 2020 HOH HOH E . O 4 HOH 21 2021 2021 HOH HOH E . O 4 HOH 22 2022 2022 HOH HOH E . O 4 HOH 23 2023 2023 HOH HOH E . O 4 HOH 24 2024 2024 HOH HOH E . O 4 HOH 25 2025 2025 HOH HOH E . O 4 HOH 26 2026 2026 HOH HOH E . O 4 HOH 27 2027 2027 HOH HOH E . O 4 HOH 28 2028 2028 HOH HOH E . O 4 HOH 29 2029 2029 HOH HOH E . O 4 HOH 30 2030 2030 HOH HOH E . O 4 HOH 31 2031 2031 HOH HOH E . O 4 HOH 32 2032 2032 HOH HOH E . O 4 HOH 33 2033 2033 HOH HOH E . O 4 HOH 34 2034 2034 HOH HOH E . O 4 HOH 35 2035 2035 HOH HOH E . O 4 HOH 36 2036 2036 HOH HOH E . P 4 HOH 1 2001 2001 HOH HOH F . P 4 HOH 2 2002 2002 HOH HOH F . P 4 HOH 3 2003 2003 HOH HOH F . P 4 HOH 4 2004 2004 HOH HOH F . P 4 HOH 5 2005 2005 HOH HOH F . P 4 HOH 6 2006 2006 HOH HOH F . P 4 HOH 7 2007 2007 HOH HOH F . P 4 HOH 8 2008 2008 HOH HOH F . P 4 HOH 9 2009 2009 HOH HOH F . P 4 HOH 10 2010 2010 HOH HOH F . P 4 HOH 11 2011 2011 HOH HOH F . P 4 HOH 12 2012 2012 HOH HOH F . P 4 HOH 13 2013 2013 HOH HOH F . P 4 HOH 14 2014 2014 HOH HOH F . P 4 HOH 15 2015 2015 HOH HOH F . P 4 HOH 16 2016 2016 HOH HOH F . P 4 HOH 17 2017 2017 HOH HOH F . P 4 HOH 18 2018 2018 HOH HOH F . P 4 HOH 19 2019 2019 HOH HOH F . P 4 HOH 20 2020 2020 HOH HOH F . P 4 HOH 21 2021 2021 HOH HOH F . P 4 HOH 22 2022 2022 HOH HOH F . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA tetrameric 4 2 author_and_software_defined_assembly PISA tetrameric 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,G,H,I,K,L,M,N 2 1,2 E,F,J,O,P # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 7500 ? 1 MORE -54.5 ? 1 'SSA (A^2)' 7580 ? 2 'ABSA (A^2)' 6800 ? 2 MORE -41.4 ? 2 'SSA (A^2)' 7870 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_757 -x+2,y,-z+2 -1.0000000000 0.0000000000 0.0000000000 138.4339784813 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 110.8577620708 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-08-27 2 'Structure model' 1 1 2014-09-17 3 'Structure model' 1 2 2019-05-08 4 'Structure model' 1 3 2019-05-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Experimental preparation' 4 3 'Structure model' Other 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Experimental preparation' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' exptl_crystal_grow 2 3 'Structure model' pdbx_database_proc 3 3 'Structure model' pdbx_database_status 4 4 'Structure model' exptl_crystal_grow # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_exptl_crystal_grow.method' 2 3 'Structure model' '_pdbx_database_status.recvd_author_approval' 3 4 'Structure model' '_exptl_crystal_grow.temp' # _software.name REFMAC _software.classification refinement _software.version 5.8.0069 _software.citation_id ? _software.pdbx_ordinal 1 # _pdbx_entry_details.entry_id 4CZ7 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;ADDITIONAL GGS SEQUENCE AT THE N TERMINUS AS A RESULT OF CLONING STRATEGY ; # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 299 ? A GLY 1 2 1 Y 1 A GLY 300 ? A GLY 2 3 1 Y 1 A SER 301 ? A SER 3 4 1 Y 1 B GLY 299 ? B GLY 1 5 1 Y 1 C GLY 299 ? C GLY 1 6 1 Y 1 C GLY 300 ? C GLY 2 7 1 Y 1 D GLY 299 ? D GLY 1 8 1 Y 1 D GLY 300 ? D GLY 2 9 1 Y 1 E GLY 299 ? E GLY 1 10 1 Y 1 E VAL 330 ? E VAL 32 11 1 Y 1 E VAL 331 ? E VAL 33 12 1 Y 1 F GLY 299 ? F GLY 1 13 1 Y 1 F GLY 300 ? F GLY 2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'PHOSPHATE ION' PO4 3 GLYCEROL GOL 4 water HOH #