data_4D01 # _entry.id 4D01 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4D01 pdb_00004d01 10.2210/pdb4d01/pdb PDBE EBI-60443 ? ? WWPDB D_1290060443 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 4UXU unspecified ;CRYSTAL STRUCTURE OF THE EXTRACELLULAR DOMAIN OF THE HUMAN ALPHA9 NICOTINIC ACETYLCHOLINE RECEPTOR IN COMPLEX WITH METHYLLYCACONITINE ; PDB 4UY2 unspecified 'CRYSTAL STRUCTURE OF THE COMPLEX OF THE EXTRACELLULAR DOMAIN OF HUMAN ALPHA9 NACHR WITH ALPHA-BUNGAROTOXIN.' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4D01 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2014-04-23 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Giastas, P.' 1 'Zouridakis, M.' 2 'Zarkadas, E.' 3 'Tzartos, S.J.' 4 # _citation.id primary _citation.title 'Crystal Structures of Free and Antagonist-Bound States of Human Alpha9 Nicotinic Receptor Extracellular Domain' _citation.journal_abbrev Nat.Struct.Mol.Biol. _citation.journal_volume 21 _citation.page_first 976 _citation.page_last ? _citation.year 2014 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1545-9993 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25282151 _citation.pdbx_database_id_DOI 10.1038/NSMB.2900 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zouridakis, M.' 1 ? primary 'Giastas, P.' 2 ? primary 'Zarkadas, E.' 3 ? primary 'Chroni-Tzartou, D.' 4 ? primary 'Bregestovski, P.' 5 ? primary 'Tzartos, S.J.' 6 ? # _cell.entry_id 4D01 _cell.length_a 49.520 _cell.length_b 64.269 _cell.length_c 80.138 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4D01 _symmetry.space_group_name_H-M 'P 2 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'NEURONAL ACETYLCHOLINE RECEPTOR SUBUNIT ALPHA-9' 25307.029 1 ? ? 'EXTRACELLULAR DOMAIN, RESIDUES 26-237' ? 2 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 2 ? ? ? ? 3 non-polymer syn 1,2-ETHANEDIOL 62.068 4 ? ? ? ? 4 water nat water 18.015 206 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'NICOTINIC ACETYLCHOLINE RECEPTOR SUBUNIT ALPHA-9, NACHR ALPHA-9, HUMAN ALPHA9 NICOTINIC ACETYLCHOLINE RECEPTOR' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;ADGKYAQKLFNDLFEDYSNALRPVEDTDKVLNVTLQITLSQIKDMDERNQILTAYLWIRQIWHDAYLTWDRDQYDGLDSI RIPSDLVWRPDIVLYNKADDESSEPVNTNVVLRYDGLITWDAPAITKSSCVVDVTYFPFDNQQCNLTFGSWTYNGNQVDI FNALDSGDLSDFIEDVEWEVHGMPAVKNVISYGCCSEPYPDVTFTLLLKRRSHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;ADGKYAQKLFNDLFEDYSNALRPVEDTDKVLNVTLQITLSQIKDMDERNQILTAYLWIRQIWHDAYLTWDRDQYDGLDSI RIPSDLVWRPDIVLYNKADDESSEPVNTNVVLRYDGLITWDAPAITKSSCVVDVTYFPFDNQQCNLTFGSWTYNGNQVDI FNALDSGDLSDFIEDVEWEVHGMPAVKNVISYGCCSEPYPDVTFTLLLKRRSHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 ASP n 1 3 GLY n 1 4 LYS n 1 5 TYR n 1 6 ALA n 1 7 GLN n 1 8 LYS n 1 9 LEU n 1 10 PHE n 1 11 ASN n 1 12 ASP n 1 13 LEU n 1 14 PHE n 1 15 GLU n 1 16 ASP n 1 17 TYR n 1 18 SER n 1 19 ASN n 1 20 ALA n 1 21 LEU n 1 22 ARG n 1 23 PRO n 1 24 VAL n 1 25 GLU n 1 26 ASP n 1 27 THR n 1 28 ASP n 1 29 LYS n 1 30 VAL n 1 31 LEU n 1 32 ASN n 1 33 VAL n 1 34 THR n 1 35 LEU n 1 36 GLN n 1 37 ILE n 1 38 THR n 1 39 LEU n 1 40 SER n 1 41 GLN n 1 42 ILE n 1 43 LYS n 1 44 ASP n 1 45 MET n 1 46 ASP n 1 47 GLU n 1 48 ARG n 1 49 ASN n 1 50 GLN n 1 51 ILE n 1 52 LEU n 1 53 THR n 1 54 ALA n 1 55 TYR n 1 56 LEU n 1 57 TRP n 1 58 ILE n 1 59 ARG n 1 60 GLN n 1 61 ILE n 1 62 TRP n 1 63 HIS n 1 64 ASP n 1 65 ALA n 1 66 TYR n 1 67 LEU n 1 68 THR n 1 69 TRP n 1 70 ASP n 1 71 ARG n 1 72 ASP n 1 73 GLN n 1 74 TYR n 1 75 ASP n 1 76 GLY n 1 77 LEU n 1 78 ASP n 1 79 SER n 1 80 ILE n 1 81 ARG n 1 82 ILE n 1 83 PRO n 1 84 SER n 1 85 ASP n 1 86 LEU n 1 87 VAL n 1 88 TRP n 1 89 ARG n 1 90 PRO n 1 91 ASP n 1 92 ILE n 1 93 VAL n 1 94 LEU n 1 95 TYR n 1 96 ASN n 1 97 LYS n 1 98 ALA n 1 99 ASP n 1 100 ASP n 1 101 GLU n 1 102 SER n 1 103 SER n 1 104 GLU n 1 105 PRO n 1 106 VAL n 1 107 ASN n 1 108 THR n 1 109 ASN n 1 110 VAL n 1 111 VAL n 1 112 LEU n 1 113 ARG n 1 114 TYR n 1 115 ASP n 1 116 GLY n 1 117 LEU n 1 118 ILE n 1 119 THR n 1 120 TRP n 1 121 ASP n 1 122 ALA n 1 123 PRO n 1 124 ALA n 1 125 ILE n 1 126 THR n 1 127 LYS n 1 128 SER n 1 129 SER n 1 130 CYS n 1 131 VAL n 1 132 VAL n 1 133 ASP n 1 134 VAL n 1 135 THR n 1 136 TYR n 1 137 PHE n 1 138 PRO n 1 139 PHE n 1 140 ASP n 1 141 ASN n 1 142 GLN n 1 143 GLN n 1 144 CYS n 1 145 ASN n 1 146 LEU n 1 147 THR n 1 148 PHE n 1 149 GLY n 1 150 SER n 1 151 TRP n 1 152 THR n 1 153 TYR n 1 154 ASN n 1 155 GLY n 1 156 ASN n 1 157 GLN n 1 158 VAL n 1 159 ASP n 1 160 ILE n 1 161 PHE n 1 162 ASN n 1 163 ALA n 1 164 LEU n 1 165 ASP n 1 166 SER n 1 167 GLY n 1 168 ASP n 1 169 LEU n 1 170 SER n 1 171 ASP n 1 172 PHE n 1 173 ILE n 1 174 GLU n 1 175 ASP n 1 176 VAL n 1 177 GLU n 1 178 TRP n 1 179 GLU n 1 180 VAL n 1 181 HIS n 1 182 GLY n 1 183 MET n 1 184 PRO n 1 185 ALA n 1 186 VAL n 1 187 LYS n 1 188 ASN n 1 189 VAL n 1 190 ILE n 1 191 SER n 1 192 TYR n 1 193 GLY n 1 194 CYS n 1 195 CYS n 1 196 SER n 1 197 GLU n 1 198 PRO n 1 199 TYR n 1 200 PRO n 1 201 ASP n 1 202 VAL n 1 203 THR n 1 204 PHE n 1 205 THR n 1 206 LEU n 1 207 LEU n 1 208 LEU n 1 209 LYS n 1 210 ARG n 1 211 ARG n 1 212 SER n 1 213 HIS n 1 214 HIS n 1 215 HIS n 1 216 HIS n 1 217 HIS n 1 218 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HUMAN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'KOMAGATAELLA PASTORIS' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 4922 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain X33 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PPICZAA _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code ACHA9_HUMAN _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession Q9UGM1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4D01 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 212 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9UGM1 _struct_ref_seq.db_align_beg 26 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 237 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 212 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4D01 HIS A 213 ? UNP Q9UGM1 ? ? 'expression tag' 213 1 1 4D01 HIS A 214 ? UNP Q9UGM1 ? ? 'expression tag' 214 2 1 4D01 HIS A 215 ? UNP Q9UGM1 ? ? 'expression tag' 215 3 1 4D01 HIS A 216 ? UNP Q9UGM1 ? ? 'expression tag' 216 4 1 4D01 HIS A 217 ? UNP Q9UGM1 ? ? 'expression tag' 217 5 1 4D01 HIS A 218 ? UNP Q9UGM1 ? ? 'expression tag' 218 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4D01 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.4 _exptl_crystal.density_percent_sol 51 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '100 MM SPG BUFFER PH 6.5, 25% PEG 3350' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 2M' _diffrn_detector.pdbx_collection_date 2013-01-10 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X06DA' _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X06DA _diffrn_source.pdbx_wavelength 1.0000 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4D01 _reflns.observed_criterion_sigma_I 1.4 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 42.00 _reflns.d_resolution_high 1.79 _reflns.number_obs 24313 _reflns.number_all ? _reflns.percent_possible_obs 99.3 _reflns.pdbx_Rmerge_I_obs 0.08 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 15.90 _reflns.B_iso_Wilson_estimate 32.7 _reflns.pdbx_redundancy 12.5 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.79 _reflns_shell.d_res_low 42.00 _reflns_shell.percent_possible_all 95.4 _reflns_shell.Rmerge_I_obs 1.40 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.20 _reflns_shell.pdbx_redundancy 11.4 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4D01 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 24313 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.33 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 42.126 _refine.ls_d_res_high 1.795 _refine.ls_percent_reflns_obs 98.81 _refine.ls_R_factor_obs 0.1960 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1950 _refine.ls_R_factor_R_free 0.2497 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1240 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 48 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details 'RESIDUES OF THE REGION 100-104 WAS EITHER LEFT UNMODELED OR WAS MODELED ONLY THEIR MAIN CHAIN ATOMS' _refine.pdbx_starting_model 'PDB ENTRY 2QC1' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.24 _refine.pdbx_overall_phase_error 28.07 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1721 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 44 _refine_hist.number_atoms_solvent 206 _refine_hist.number_atoms_total 1971 _refine_hist.d_res_high 1.795 _refine_hist.d_res_low 42.126 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.013 ? ? 1840 'X-RAY DIFFRACTION' ? f_angle_d 1.459 ? ? 2509 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 13.344 ? ? 664 'X-RAY DIFFRACTION' ? f_chiral_restr 0.082 ? ? 274 'X-RAY DIFFRACTION' ? f_plane_restr 0.008 ? ? 323 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 1.7945 1.8664 2380 0.3309 93.00 0.4005 . . 123 . . 'X-RAY DIFFRACTION' . 1.8664 1.9513 2517 0.2617 99.00 0.3133 . . 161 . . 'X-RAY DIFFRACTION' . 1.9513 2.0542 2551 0.2429 100.00 0.2904 . . 140 . . 'X-RAY DIFFRACTION' . 2.0542 2.1829 2533 0.2110 99.00 0.2385 . . 143 . . 'X-RAY DIFFRACTION' . 2.1829 2.3514 2554 0.2184 100.00 0.2886 . . 137 . . 'X-RAY DIFFRACTION' . 2.3514 2.5880 2570 0.2067 99.00 0.2607 . . 135 . . 'X-RAY DIFFRACTION' . 2.5880 2.9624 2581 0.1953 99.00 0.2694 . . 121 . . 'X-RAY DIFFRACTION' . 2.9624 3.7320 2605 0.1720 100.00 0.2424 . . 148 . . 'X-RAY DIFFRACTION' . 3.7320 42.1377 2782 0.1645 100.00 0.2158 . . 132 . . # _struct.entry_id 4D01 _struct.title 'Crystal Structure of the Extracellular Domain of the Human Alpha9 Nicotinic Acetylcholine Receptor' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4D01 _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' _struct_keywords.text 'SIGNALING PROTEIN, LIGAND BINDING DOMAIN, CYS-LOOP RECEPTOR' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 3 ? PHE A 14 ? GLY A 3 PHE A 14 1 ? 12 HELX_P HELX_P2 2 ASP A 70 ? ASP A 75 ? ASP A 70 ASP A 75 5 ? 6 HELX_P HELX_P3 3 ASP A 85 ? VAL A 87 ? ASP A 85 VAL A 87 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 130 SG ? ? ? 1_555 A CYS 144 SG ? ? A CYS 130 A CYS 144 1_555 ? ? ? ? ? ? ? 2.086 ? ? disulf2 disulf ? ? A CYS 194 SG ? ? ? 1_555 A CYS 195 SG ? ? A CYS 194 A CYS 195 1_555 ? ? ? ? ? ? ? 2.089 ? ? covale1 covale one ? A ASN 32 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 32 A NAG 1216 1_555 ? ? ? ? ? ? ? 1.450 ? N-Glycosylation covale2 covale one ? A ASN 145 ND2 ? ? ? 1_555 C NAG . C1 ? ? A ASN 145 A NAG 1217 1_555 ? ? ? ? ? ? ? 1.441 ? N-Glycosylation # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ASP 100 A . ? ASP 100 A GLU 101 A ? GLU 101 A 1 -3.45 2 PHE 137 A . ? PHE 137 A PRO 138 A ? PRO 138 A 1 -0.01 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 6 ? AB ? 6 ? AC ? 5 ? AD ? 2 ? AE ? 6 ? AF ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel AA 4 5 ? anti-parallel AA 5 6 ? anti-parallel AB 1 2 ? anti-parallel AB 2 3 ? anti-parallel AB 3 4 ? anti-parallel AB 4 5 ? anti-parallel AB 5 6 ? parallel AC 1 2 ? anti-parallel AC 2 3 ? anti-parallel AC 3 4 ? anti-parallel AC 4 5 ? parallel AD 1 2 ? anti-parallel AE 1 2 ? anti-parallel AE 2 3 ? anti-parallel AE 3 4 ? anti-parallel AE 4 5 ? anti-parallel AE 5 6 ? anti-parallel AF 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 SER A 79 ? PRO A 83 ? SER A 79 PRO A 83 AA 2 ASN A 109 ? ARG A 113 ? ASN A 109 ARG A 113 AA 3 ASP A 115 ? ASP A 133 ? ASP A 115 ASP A 133 AA 4 ASN A 141 ? SER A 150 ? ASN A 141 SER A 150 AA 5 PRO A 198 ? ARG A 210 ? PRO A 198 ARG A 210 AA 6 ALA A 185 ? SER A 191 ? ALA A 185 SER A 191 AB 1 SER A 79 ? PRO A 83 ? SER A 79 PRO A 83 AB 2 ASN A 109 ? ARG A 113 ? ASN A 109 ARG A 113 AB 3 ASP A 115 ? ASP A 133 ? ASP A 115 ASP A 133 AB 4 ILE A 51 ? THR A 68 ? ILE A 51 THR A 68 AB 5 LEU A 31 ? ASP A 46 ? LEU A 31 ASP A 46 AB 6 VAL A 158 ? ASN A 162 ? VAL A 158 ASN A 162 AC 1 SER A 79 ? PRO A 83 ? SER A 79 PRO A 83 AC 2 ASN A 109 ? ARG A 113 ? ASN A 109 ARG A 113 AC 3 ASP A 115 ? ASP A 133 ? ASP A 115 ASP A 133 AC 4 ASN A 141 ? SER A 150 ? ASN A 141 SER A 150 AC 5 ILE A 92 ? LEU A 94 ? ILE A 92 LEU A 94 AD 1 TRP A 178 ? GLY A 182 ? TRP A 178 GLY A 182 AD 2 PRO A 198 ? ARG A 210 ? PRO A 198 ARG A 210 AE 1 SER A 79 ? PRO A 83 ? SER A 79 PRO A 83 AE 2 ASN A 109 ? ARG A 113 ? ASN A 109 ARG A 113 AE 3 ASP A 115 ? ASP A 133 ? ASP A 115 ASP A 133 AE 4 ASN A 141 ? SER A 150 ? ASN A 141 SER A 150 AE 5 PRO A 198 ? ARG A 210 ? PRO A 198 ARG A 210 AE 6 TRP A 178 ? GLY A 182 ? TRP A 178 GLY A 182 AF 1 ALA A 185 ? SER A 191 ? ALA A 185 SER A 191 AF 2 PRO A 198 ? ARG A 210 ? PRO A 198 ARG A 210 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N ILE A 82 ? N ILE A 82 O VAL A 110 ? O VAL A 110 AA 2 3 O ARG A 113 ? O ARG A 113 N GLY A 116 ? N GLY A 116 AA 3 4 N ASP A 133 ? N ASP A 133 O ASN A 141 ? O ASN A 141 AA 4 5 N PHE A 148 ? N PHE A 148 O VAL A 202 ? O VAL A 202 AA 5 6 N THR A 203 ? N THR A 203 O VAL A 186 ? O VAL A 186 AB 1 2 N ILE A 82 ? N ILE A 82 O VAL A 110 ? O VAL A 110 AB 2 3 O ARG A 113 ? O ARG A 113 N GLY A 116 ? N GLY A 116 AB 3 4 N SER A 128 ? N SER A 128 O LEU A 52 ? O LEU A 52 AB 4 5 N HIS A 63 ? N HIS A 63 O ASN A 32 ? O ASN A 32 AB 5 6 N VAL A 33 ? N VAL A 33 O ASP A 159 ? O ASP A 159 AC 1 2 N ILE A 82 ? N ILE A 82 O VAL A 110 ? O VAL A 110 AC 2 3 O ARG A 113 ? O ARG A 113 N GLY A 116 ? N GLY A 116 AC 3 4 N ASP A 133 ? N ASP A 133 O ASN A 141 ? O ASN A 141 AC 4 5 N GLY A 149 ? N GLY A 149 O VAL A 93 ? O VAL A 93 AD 1 2 N HIS A 181 ? N HIS A 181 O LEU A 207 ? O LEU A 207 AE 1 2 N ILE A 82 ? N ILE A 82 O VAL A 110 ? O VAL A 110 AE 2 3 O ARG A 113 ? O ARG A 113 N GLY A 116 ? N GLY A 116 AE 3 4 N ASP A 133 ? N ASP A 133 O ASN A 141 ? O ASN A 141 AE 4 5 N PHE A 148 ? N PHE A 148 O VAL A 202 ? O VAL A 202 AE 5 6 N LYS A 209 ? N LYS A 209 O GLU A 179 ? O GLU A 179 AF 1 2 N ILE A 190 ? N ILE A 190 O TYR A 199 ? O TYR A 199 # _database_PDB_matrix.entry_id 4D01 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4D01 _atom_sites.fract_transf_matrix[1][1] 0.020194 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015560 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012478 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 ? ? ? A . n A 1 2 ASP 2 2 2 ASP ASP A . n A 1 3 GLY 3 3 3 GLY GLY A . n A 1 4 LYS 4 4 4 LYS LYS A . n A 1 5 TYR 5 5 5 TYR TYR A . n A 1 6 ALA 6 6 6 ALA ALA A . n A 1 7 GLN 7 7 7 GLN GLN A . n A 1 8 LYS 8 8 8 LYS LYS A . n A 1 9 LEU 9 9 9 LEU LEU A . n A 1 10 PHE 10 10 10 PHE PHE A . n A 1 11 ASN 11 11 11 ASN ASN A . n A 1 12 ASP 12 12 12 ASP ASP A . n A 1 13 LEU 13 13 13 LEU LEU A . n A 1 14 PHE 14 14 14 PHE PHE A . n A 1 15 GLU 15 15 15 GLU GLU A . n A 1 16 ASP 16 16 16 ASP ASP A . n A 1 17 TYR 17 17 17 TYR TYR A . n A 1 18 SER 18 18 18 SER SER A . n A 1 19 ASN 19 19 19 ASN ASN A . n A 1 20 ALA 20 20 20 ALA ALA A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 ARG 22 22 22 ARG ARG A . n A 1 23 PRO 23 23 23 PRO PRO A . n A 1 24 VAL 24 24 24 VAL VAL A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 ASP 26 26 26 ASP ASP A . n A 1 27 THR 27 27 27 THR THR A . n A 1 28 ASP 28 28 28 ASP ASP A . n A 1 29 LYS 29 29 29 LYS LYS A . n A 1 30 VAL 30 30 30 VAL VAL A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 ASN 32 32 32 ASN ASN A . n A 1 33 VAL 33 33 33 VAL VAL A . n A 1 34 THR 34 34 34 THR THR A . n A 1 35 LEU 35 35 35 LEU LEU A . n A 1 36 GLN 36 36 36 GLN GLN A . n A 1 37 ILE 37 37 37 ILE ILE A . n A 1 38 THR 38 38 38 THR THR A . n A 1 39 LEU 39 39 39 LEU LEU A . n A 1 40 SER 40 40 40 SER SER A . n A 1 41 GLN 41 41 41 GLN GLN A . n A 1 42 ILE 42 42 42 ILE ILE A . n A 1 43 LYS 43 43 43 LYS LYS A . n A 1 44 ASP 44 44 44 ASP ASP A . n A 1 45 MET 45 45 45 MET MET A . n A 1 46 ASP 46 46 46 ASP ASP A . n A 1 47 GLU 47 47 47 GLU GLU A . n A 1 48 ARG 48 48 48 ARG ARG A . n A 1 49 ASN 49 49 49 ASN ASN A . n A 1 50 GLN 50 50 50 GLN GLN A . n A 1 51 ILE 51 51 51 ILE ILE A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 THR 53 53 53 THR THR A . n A 1 54 ALA 54 54 54 ALA ALA A . n A 1 55 TYR 55 55 55 TYR TYR A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 TRP 57 57 57 TRP TRP A . n A 1 58 ILE 58 58 58 ILE ILE A . n A 1 59 ARG 59 59 59 ARG ARG A . n A 1 60 GLN 60 60 60 GLN GLN A . n A 1 61 ILE 61 61 61 ILE ILE A . n A 1 62 TRP 62 62 62 TRP TRP A . n A 1 63 HIS 63 63 63 HIS HIS A . n A 1 64 ASP 64 64 64 ASP ASP A . n A 1 65 ALA 65 65 65 ALA ALA A . n A 1 66 TYR 66 66 66 TYR TYR A . n A 1 67 LEU 67 67 67 LEU LEU A . n A 1 68 THR 68 68 68 THR THR A . n A 1 69 TRP 69 69 69 TRP TRP A . n A 1 70 ASP 70 70 70 ASP ASP A . n A 1 71 ARG 71 71 71 ARG ARG A . n A 1 72 ASP 72 72 72 ASP ASP A . n A 1 73 GLN 73 73 73 GLN GLN A . n A 1 74 TYR 74 74 74 TYR TYR A . n A 1 75 ASP 75 75 75 ASP ASP A . n A 1 76 GLY 76 76 76 GLY GLY A . n A 1 77 LEU 77 77 77 LEU LEU A . n A 1 78 ASP 78 78 78 ASP ASP A . n A 1 79 SER 79 79 79 SER SER A . n A 1 80 ILE 80 80 80 ILE ILE A . n A 1 81 ARG 81 81 81 ARG ARG A . n A 1 82 ILE 82 82 82 ILE ILE A . n A 1 83 PRO 83 83 83 PRO PRO A . n A 1 84 SER 84 84 84 SER SER A . n A 1 85 ASP 85 85 85 ASP ASP A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 VAL 87 87 87 VAL VAL A . n A 1 88 TRP 88 88 88 TRP TRP A . n A 1 89 ARG 89 89 89 ARG ARG A . n A 1 90 PRO 90 90 90 PRO PRO A . n A 1 91 ASP 91 91 91 ASP ASP A . n A 1 92 ILE 92 92 92 ILE ILE A . n A 1 93 VAL 93 93 93 VAL VAL A . n A 1 94 LEU 94 94 94 LEU LEU A . n A 1 95 TYR 95 95 95 TYR TYR A . n A 1 96 ASN 96 96 96 ASN ASN A . n A 1 97 LYS 97 97 97 LYS LYS A . n A 1 98 ALA 98 98 98 ALA ALA A . n A 1 99 ASP 99 99 99 ASP ASP A . n A 1 100 ASP 100 100 100 ASP ASP A . n A 1 101 GLU 101 101 101 GLU GLU A . n A 1 102 SER 102 102 ? ? ? A . n A 1 103 SER 103 103 ? ? ? A . n A 1 104 GLU 104 104 104 GLU GLU A . n A 1 105 PRO 105 105 105 PRO PRO A . n A 1 106 VAL 106 106 106 VAL VAL A . n A 1 107 ASN 107 107 107 ASN ASN A . n A 1 108 THR 108 108 108 THR THR A . n A 1 109 ASN 109 109 109 ASN ASN A . n A 1 110 VAL 110 110 110 VAL VAL A . n A 1 111 VAL 111 111 111 VAL VAL A . n A 1 112 LEU 112 112 112 LEU LEU A . n A 1 113 ARG 113 113 113 ARG ARG A . n A 1 114 TYR 114 114 114 TYR TYR A . n A 1 115 ASP 115 115 115 ASP ASP A . n A 1 116 GLY 116 116 116 GLY GLY A . n A 1 117 LEU 117 117 117 LEU LEU A . n A 1 118 ILE 118 118 118 ILE ILE A . n A 1 119 THR 119 119 119 THR THR A . n A 1 120 TRP 120 120 120 TRP TRP A . n A 1 121 ASP 121 121 121 ASP ASP A . n A 1 122 ALA 122 122 122 ALA ALA A . n A 1 123 PRO 123 123 123 PRO PRO A . n A 1 124 ALA 124 124 124 ALA ALA A . n A 1 125 ILE 125 125 125 ILE ILE A . n A 1 126 THR 126 126 126 THR THR A . n A 1 127 LYS 127 127 127 LYS LYS A . n A 1 128 SER 128 128 128 SER SER A . n A 1 129 SER 129 129 129 SER SER A . n A 1 130 CYS 130 130 130 CYS CYS A . n A 1 131 VAL 131 131 131 VAL VAL A . n A 1 132 VAL 132 132 132 VAL VAL A . n A 1 133 ASP 133 133 133 ASP ASP A . n A 1 134 VAL 134 134 134 VAL VAL A . n A 1 135 THR 135 135 135 THR THR A . n A 1 136 TYR 136 136 136 TYR TYR A . n A 1 137 PHE 137 137 137 PHE PHE A . n A 1 138 PRO 138 138 138 PRO PRO A . n A 1 139 PHE 139 139 139 PHE PHE A . n A 1 140 ASP 140 140 140 ASP ASP A . n A 1 141 ASN 141 141 141 ASN ASN A . n A 1 142 GLN 142 142 142 GLN GLN A . n A 1 143 GLN 143 143 143 GLN GLN A . n A 1 144 CYS 144 144 144 CYS CYS A . n A 1 145 ASN 145 145 145 ASN ASN A . n A 1 146 LEU 146 146 146 LEU LEU A . n A 1 147 THR 147 147 147 THR THR A . n A 1 148 PHE 148 148 148 PHE PHE A . n A 1 149 GLY 149 149 149 GLY GLY A . n A 1 150 SER 150 150 150 SER SER A . n A 1 151 TRP 151 151 151 TRP TRP A . n A 1 152 THR 152 152 152 THR THR A . n A 1 153 TYR 153 153 153 TYR TYR A . n A 1 154 ASN 154 154 154 ASN ASN A . n A 1 155 GLY 155 155 155 GLY GLY A . n A 1 156 ASN 156 156 156 ASN ASN A . n A 1 157 GLN 157 157 157 GLN GLN A . n A 1 158 VAL 158 158 158 VAL VAL A . n A 1 159 ASP 159 159 159 ASP ASP A . n A 1 160 ILE 160 160 160 ILE ILE A . n A 1 161 PHE 161 161 161 PHE PHE A . n A 1 162 ASN 162 162 162 ASN ASN A . n A 1 163 ALA 163 163 163 ALA ALA A . n A 1 164 LEU 164 164 164 LEU LEU A . n A 1 165 ASP 165 165 165 ASP ASP A . n A 1 166 SER 166 166 166 SER SER A . n A 1 167 GLY 167 167 167 GLY GLY A . n A 1 168 ASP 168 168 168 ASP ASP A . n A 1 169 LEU 169 169 169 LEU LEU A . n A 1 170 SER 170 170 170 SER SER A . n A 1 171 ASP 171 171 171 ASP ASP A . n A 1 172 PHE 172 172 172 PHE PHE A . n A 1 173 ILE 173 173 173 ILE ILE A . n A 1 174 GLU 174 174 174 GLU GLU A . n A 1 175 ASP 175 175 175 ASP ASP A . n A 1 176 VAL 176 176 176 VAL VAL A . n A 1 177 GLU 177 177 177 GLU GLU A . n A 1 178 TRP 178 178 178 TRP TRP A . n A 1 179 GLU 179 179 179 GLU GLU A . n A 1 180 VAL 180 180 180 VAL VAL A . n A 1 181 HIS 181 181 181 HIS HIS A . n A 1 182 GLY 182 182 182 GLY GLY A . n A 1 183 MET 183 183 183 MET MET A . n A 1 184 PRO 184 184 184 PRO PRO A . n A 1 185 ALA 185 185 185 ALA ALA A . n A 1 186 VAL 186 186 186 VAL VAL A . n A 1 187 LYS 187 187 187 LYS LYS A . n A 1 188 ASN 188 188 188 ASN ASN A . n A 1 189 VAL 189 189 189 VAL VAL A . n A 1 190 ILE 190 190 190 ILE ILE A . n A 1 191 SER 191 191 191 SER SER A . n A 1 192 TYR 192 192 192 TYR TYR A . n A 1 193 GLY 193 193 193 GLY GLY A . n A 1 194 CYS 194 194 194 CYS CYS A . n A 1 195 CYS 195 195 195 CYS CYS A . n A 1 196 SER 196 196 196 SER SER A . n A 1 197 GLU 197 197 197 GLU GLU A . n A 1 198 PRO 198 198 198 PRO PRO A . n A 1 199 TYR 199 199 199 TYR TYR A . n A 1 200 PRO 200 200 200 PRO PRO A . n A 1 201 ASP 201 201 201 ASP ASP A . n A 1 202 VAL 202 202 202 VAL VAL A . n A 1 203 THR 203 203 203 THR THR A . n A 1 204 PHE 204 204 204 PHE PHE A . n A 1 205 THR 205 205 205 THR THR A . n A 1 206 LEU 206 206 206 LEU LEU A . n A 1 207 LEU 207 207 207 LEU LEU A . n A 1 208 LEU 208 208 208 LEU LEU A . n A 1 209 LYS 209 209 209 LYS LYS A . n A 1 210 ARG 210 210 210 ARG ARG A . n A 1 211 ARG 211 211 211 ARG ARG A . n A 1 212 SER 212 212 212 SER SER A . n A 1 213 HIS 213 213 213 HIS HIS A . n A 1 214 HIS 214 214 214 HIS HIS A . n A 1 215 HIS 215 215 215 HIS HIS A . n A 1 216 HIS 216 216 ? ? ? A . n A 1 217 HIS 217 217 ? ? ? A . n A 1 218 HIS 218 218 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG 1 1216 1216 NAG NAG A . C 2 NAG 1 1217 1217 NAG NAG A . D 3 EDO 1 1218 1218 EDO EDO A . E 3 EDO 1 1219 1219 EDO EDO A . F 3 EDO 1 1220 1220 EDO EDO A . G 3 EDO 1 1221 1221 EDO EDO A . H 4 HOH 1 2001 2001 HOH HOH A . H 4 HOH 2 2002 2002 HOH HOH A . H 4 HOH 3 2003 2003 HOH HOH A . H 4 HOH 4 2004 2004 HOH HOH A . H 4 HOH 5 2005 2005 HOH HOH A . H 4 HOH 6 2006 2006 HOH HOH A . H 4 HOH 7 2007 2007 HOH HOH A . H 4 HOH 8 2008 2008 HOH HOH A . H 4 HOH 9 2009 2009 HOH HOH A . H 4 HOH 10 2010 2010 HOH HOH A . H 4 HOH 11 2011 2011 HOH HOH A . H 4 HOH 12 2012 2012 HOH HOH A . H 4 HOH 13 2013 2013 HOH HOH A . H 4 HOH 14 2014 2014 HOH HOH A . H 4 HOH 15 2015 2015 HOH HOH A . H 4 HOH 16 2016 2016 HOH HOH A . H 4 HOH 17 2017 2017 HOH HOH A . H 4 HOH 18 2018 2018 HOH HOH A . H 4 HOH 19 2019 2019 HOH HOH A . H 4 HOH 20 2020 2020 HOH HOH A . H 4 HOH 21 2021 2021 HOH HOH A . H 4 HOH 22 2022 2022 HOH HOH A . H 4 HOH 23 2023 2023 HOH HOH A . H 4 HOH 24 2024 2024 HOH HOH A . H 4 HOH 25 2025 2025 HOH HOH A . H 4 HOH 26 2026 2026 HOH HOH A . H 4 HOH 27 2027 2027 HOH HOH A . H 4 HOH 28 2028 2028 HOH HOH A . H 4 HOH 29 2029 2029 HOH HOH A . H 4 HOH 30 2030 2030 HOH HOH A . H 4 HOH 31 2031 2031 HOH HOH A . H 4 HOH 32 2032 2032 HOH HOH A . H 4 HOH 33 2033 2033 HOH HOH A . H 4 HOH 34 2034 2034 HOH HOH A . H 4 HOH 35 2035 2035 HOH HOH A . H 4 HOH 36 2036 2036 HOH HOH A . H 4 HOH 37 2037 2037 HOH HOH A . H 4 HOH 38 2038 2038 HOH HOH A . H 4 HOH 39 2039 2039 HOH HOH A . H 4 HOH 40 2040 2040 HOH HOH A . H 4 HOH 41 2041 2041 HOH HOH A . H 4 HOH 42 2042 2042 HOH HOH A . H 4 HOH 43 2043 2043 HOH HOH A . H 4 HOH 44 2044 2044 HOH HOH A . H 4 HOH 45 2045 2045 HOH HOH A . H 4 HOH 46 2046 2046 HOH HOH A . H 4 HOH 47 2047 2047 HOH HOH A . H 4 HOH 48 2048 2048 HOH HOH A . H 4 HOH 49 2049 2049 HOH HOH A . H 4 HOH 50 2050 2050 HOH HOH A . H 4 HOH 51 2051 2051 HOH HOH A . H 4 HOH 52 2052 2052 HOH HOH A . H 4 HOH 53 2053 2053 HOH HOH A . H 4 HOH 54 2054 2054 HOH HOH A . H 4 HOH 55 2055 2055 HOH HOH A . H 4 HOH 56 2056 2056 HOH HOH A . H 4 HOH 57 2057 2057 HOH HOH A . H 4 HOH 58 2058 2058 HOH HOH A . H 4 HOH 59 2059 2059 HOH HOH A . H 4 HOH 60 2060 2060 HOH HOH A . H 4 HOH 61 2061 2061 HOH HOH A . H 4 HOH 62 2062 2062 HOH HOH A . H 4 HOH 63 2063 2063 HOH HOH A . H 4 HOH 64 2064 2064 HOH HOH A . H 4 HOH 65 2065 2065 HOH HOH A . H 4 HOH 66 2066 2066 HOH HOH A . H 4 HOH 67 2067 2067 HOH HOH A . H 4 HOH 68 2068 2068 HOH HOH A . H 4 HOH 69 2069 2069 HOH HOH A . H 4 HOH 70 2070 2070 HOH HOH A . H 4 HOH 71 2071 2071 HOH HOH A . H 4 HOH 72 2072 2072 HOH HOH A . H 4 HOH 73 2073 2073 HOH HOH A . H 4 HOH 74 2074 2074 HOH HOH A . H 4 HOH 75 2075 2075 HOH HOH A . H 4 HOH 76 2076 2076 HOH HOH A . H 4 HOH 77 2077 2077 HOH HOH A . H 4 HOH 78 2078 2078 HOH HOH A . H 4 HOH 79 2079 2079 HOH HOH A . H 4 HOH 80 2080 2080 HOH HOH A . H 4 HOH 81 2081 2081 HOH HOH A . H 4 HOH 82 2082 2082 HOH HOH A . H 4 HOH 83 2083 2083 HOH HOH A . H 4 HOH 84 2084 2084 HOH HOH A . H 4 HOH 85 2085 2085 HOH HOH A . H 4 HOH 86 2086 2086 HOH HOH A . H 4 HOH 87 2087 2087 HOH HOH A . H 4 HOH 88 2088 2088 HOH HOH A . H 4 HOH 89 2089 2089 HOH HOH A . H 4 HOH 90 2090 2090 HOH HOH A . H 4 HOH 91 2091 2091 HOH HOH A . H 4 HOH 92 2092 2092 HOH HOH A . H 4 HOH 93 2093 2093 HOH HOH A . H 4 HOH 94 2094 2094 HOH HOH A . H 4 HOH 95 2095 2095 HOH HOH A . H 4 HOH 96 2096 2096 HOH HOH A . H 4 HOH 97 2097 2097 HOH HOH A . H 4 HOH 98 2098 2098 HOH HOH A . H 4 HOH 99 2099 2099 HOH HOH A . H 4 HOH 100 2100 2100 HOH HOH A . H 4 HOH 101 2101 2101 HOH HOH A . H 4 HOH 102 2102 2102 HOH HOH A . H 4 HOH 103 2103 2103 HOH HOH A . H 4 HOH 104 2104 2104 HOH HOH A . H 4 HOH 105 2105 2105 HOH HOH A . H 4 HOH 106 2106 2106 HOH HOH A . H 4 HOH 107 2107 2107 HOH HOH A . H 4 HOH 108 2108 2108 HOH HOH A . H 4 HOH 109 2109 2109 HOH HOH A . H 4 HOH 110 2110 2110 HOH HOH A . H 4 HOH 111 2111 2111 HOH HOH A . H 4 HOH 112 2112 2112 HOH HOH A . H 4 HOH 113 2113 2113 HOH HOH A . H 4 HOH 114 2114 2114 HOH HOH A . H 4 HOH 115 2115 2115 HOH HOH A . H 4 HOH 116 2116 2116 HOH HOH A . H 4 HOH 117 2117 2117 HOH HOH A . H 4 HOH 118 2118 2118 HOH HOH A . H 4 HOH 119 2119 2119 HOH HOH A . H 4 HOH 120 2120 2120 HOH HOH A . H 4 HOH 121 2121 2121 HOH HOH A . H 4 HOH 122 2122 2122 HOH HOH A . H 4 HOH 123 2123 2123 HOH HOH A . H 4 HOH 124 2124 2124 HOH HOH A . H 4 HOH 125 2125 2125 HOH HOH A . H 4 HOH 126 2126 2126 HOH HOH A . H 4 HOH 127 2127 2127 HOH HOH A . H 4 HOH 128 2128 2128 HOH HOH A . H 4 HOH 129 2129 2129 HOH HOH A . H 4 HOH 130 2130 2130 HOH HOH A . H 4 HOH 131 2131 2131 HOH HOH A . H 4 HOH 132 2132 2132 HOH HOH A . H 4 HOH 133 2133 2133 HOH HOH A . H 4 HOH 134 2134 2134 HOH HOH A . H 4 HOH 135 2135 2135 HOH HOH A . H 4 HOH 136 2136 2136 HOH HOH A . H 4 HOH 137 2137 2137 HOH HOH A . H 4 HOH 138 2138 2138 HOH HOH A . H 4 HOH 139 2139 2139 HOH HOH A . H 4 HOH 140 2140 2140 HOH HOH A . H 4 HOH 141 2141 2141 HOH HOH A . H 4 HOH 142 2142 2142 HOH HOH A . H 4 HOH 143 2143 2143 HOH HOH A . H 4 HOH 144 2144 2144 HOH HOH A . H 4 HOH 145 2145 2145 HOH HOH A . H 4 HOH 146 2146 2146 HOH HOH A . H 4 HOH 147 2147 2147 HOH HOH A . H 4 HOH 148 2148 2148 HOH HOH A . H 4 HOH 149 2149 2149 HOH HOH A . H 4 HOH 150 2150 2150 HOH HOH A . H 4 HOH 151 2151 2151 HOH HOH A . H 4 HOH 152 2152 2152 HOH HOH A . H 4 HOH 153 2153 2153 HOH HOH A . H 4 HOH 154 2154 2154 HOH HOH A . H 4 HOH 155 2155 2155 HOH HOH A . H 4 HOH 156 2156 2156 HOH HOH A . H 4 HOH 157 2157 2157 HOH HOH A . H 4 HOH 158 2158 2158 HOH HOH A . H 4 HOH 159 2159 2159 HOH HOH A . H 4 HOH 160 2160 2160 HOH HOH A . H 4 HOH 161 2161 2161 HOH HOH A . H 4 HOH 162 2162 2162 HOH HOH A . H 4 HOH 163 2163 2163 HOH HOH A . H 4 HOH 164 2164 2164 HOH HOH A . H 4 HOH 165 2165 2165 HOH HOH A . H 4 HOH 166 2166 2166 HOH HOH A . H 4 HOH 167 2167 2167 HOH HOH A . H 4 HOH 168 2168 2168 HOH HOH A . H 4 HOH 169 2169 2169 HOH HOH A . H 4 HOH 170 2170 2170 HOH HOH A . H 4 HOH 171 2171 2171 HOH HOH A . H 4 HOH 172 2172 2172 HOH HOH A . H 4 HOH 173 2173 2173 HOH HOH A . H 4 HOH 174 2174 2174 HOH HOH A . H 4 HOH 175 2175 2175 HOH HOH A . H 4 HOH 176 2176 2176 HOH HOH A . H 4 HOH 177 2177 2177 HOH HOH A . H 4 HOH 178 2178 2178 HOH HOH A . H 4 HOH 179 2179 2179 HOH HOH A . H 4 HOH 180 2180 2180 HOH HOH A . H 4 HOH 181 2181 2181 HOH HOH A . H 4 HOH 182 2182 2182 HOH HOH A . H 4 HOH 183 2183 2183 HOH HOH A . H 4 HOH 184 2184 2184 HOH HOH A . H 4 HOH 185 2185 2185 HOH HOH A . H 4 HOH 186 2186 2186 HOH HOH A . H 4 HOH 187 2187 2187 HOH HOH A . H 4 HOH 188 2188 2188 HOH HOH A . H 4 HOH 189 2189 2189 HOH HOH A . H 4 HOH 190 2190 2190 HOH HOH A . H 4 HOH 191 2191 2191 HOH HOH A . H 4 HOH 192 2192 2192 HOH HOH A . H 4 HOH 193 2193 2193 HOH HOH A . H 4 HOH 194 2194 2194 HOH HOH A . H 4 HOH 195 2195 2195 HOH HOH A . H 4 HOH 196 2196 2196 HOH HOH A . H 4 HOH 197 2197 2197 HOH HOH A . H 4 HOH 198 2198 2198 HOH HOH A . H 4 HOH 199 2199 2199 HOH HOH A . H 4 HOH 200 2200 2200 HOH HOH A . H 4 HOH 201 2201 2201 HOH HOH A . H 4 HOH 202 2202 2202 HOH HOH A . H 4 HOH 203 2203 2203 HOH HOH A . H 4 HOH 204 2204 2204 HOH HOH A . H 4 HOH 205 2205 2205 HOH HOH A . H 4 HOH 206 2206 2206 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A ASN 32 A ASN 32 ? ASN 'GLYCOSYLATION SITE' 2 A ASN 145 A ASN 145 ? ASN 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 2072 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id H _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-10-01 2 'Structure model' 1 1 2014-10-08 3 'Structure model' 1 2 2014-10-15 4 'Structure model' 1 3 2014-11-19 5 'Structure model' 1 4 2020-07-29 6 'Structure model' 1 5 2023-12-20 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 5 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Database references' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Derived calculations' 6 5 'Structure model' Other 7 5 'Structure model' 'Structure summary' 8 6 'Structure model' 'Data collection' 9 6 'Structure model' 'Database references' 10 6 'Structure model' 'Refinement description' 11 6 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' chem_comp 2 5 'Structure model' entity 3 5 'Structure model' pdbx_chem_comp_identifier 4 5 'Structure model' pdbx_database_status 5 5 'Structure model' pdbx_entity_nonpoly 6 5 'Structure model' struct_conn 7 5 'Structure model' struct_site 8 5 'Structure model' struct_site_gen 9 6 'Structure model' chem_comp 10 6 'Structure model' chem_comp_atom 11 6 'Structure model' chem_comp_bond 12 6 'Structure model' database_2 13 6 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_chem_comp.name' 2 5 'Structure model' '_chem_comp.type' 3 5 'Structure model' '_entity.pdbx_description' 4 5 'Structure model' '_pdbx_database_status.status_code_sf' 5 5 'Structure model' '_pdbx_entity_nonpoly.name' 6 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 7 5 'Structure model' '_struct_conn.pdbx_role' 8 6 'Structure model' '_chem_comp.pdbx_synonyms' 9 6 'Structure model' '_database_2.pdbx_DOI' 10 6 'Structure model' '_database_2.pdbx_database_accession' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 48.7613 35.9854 12.5707 0.4652 0.3936 0.4914 -0.1077 0.1261 0.0266 2.0851 3.1610 3.4929 0.7469 -1.3760 -1.6466 -0.3799 0.1475 -0.2122 -0.5524 -0.1809 -0.9078 0.2188 0.6531 0.5711 'X-RAY DIFFRACTION' 2 ? refined 33.7775 42.3805 19.4146 0.3770 0.3105 0.2745 -0.0076 -0.0620 0.0092 1.3298 1.7167 1.6332 0.0962 -0.4508 0.0827 -0.2765 0.3035 0.1590 -0.2470 0.0821 -0.0276 -0.2310 -0.2487 0.1562 'X-RAY DIFFRACTION' 3 ? refined 32.2295 39.5996 18.0307 0.4081 0.4347 0.3870 0.0166 -0.0078 -0.1089 7.1308 2.6267 0.5770 2.9227 -0.8722 -0.6256 -0.0196 0.4234 0.1323 -0.1227 -0.0967 0.2384 -0.3878 -0.3287 -0.0003 'X-RAY DIFFRACTION' 4 ? refined 22.5012 42.3829 31.5330 0.3229 0.2854 0.2653 0.0480 -0.0460 -0.0485 2.2865 1.3472 1.4802 -0.0691 -0.3039 -0.3236 -0.0501 0.1651 0.2647 0.0106 -0.0511 0.1903 -0.2033 -0.3244 0.0909 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? 'CHAIN A AND (RESID 2 THROUGH 30 )' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? 'CHAIN A AND (RESID 31 THROUGH 94 )' 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? 'CHAIN A AND (RESID 95 THROUGH 116 )' 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? 'CHAIN A AND (RESID 117 THROUGH 215 )' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHENIX refinement '(PHENIX.REFINE)' ? 1 XDS 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 PHASER phasing . ? 4 # _pdbx_entry_details.entry_id 4D01 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'EXTRACELLULAR DOMAIN' _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 2001 ? ? O A HOH 2203 ? ? 2.03 2 1 O A HOH 2029 ? ? O A HOH 2033 ? ? 2.03 3 1 O A HOH 2169 ? ? O A HOH 2170 ? ? 2.06 4 1 O A HOH 2004 ? ? O A HOH 2019 ? ? 2.07 5 1 O A HOH 2196 ? ? O A HOH 2197 ? ? 2.09 6 1 O A HOH 2043 ? ? O A HOH 2081 ? ? 2.13 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 2091 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 2091 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_566 _pdbx_validate_symm_contact.dist 2.15 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 C _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 PHE _pdbx_validate_rmsd_bond.auth_seq_id_1 14 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 O _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 PHE _pdbx_validate_rmsd_bond.auth_seq_id_2 14 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.108 _pdbx_validate_rmsd_bond.bond_target_value 1.229 _pdbx_validate_rmsd_bond.bond_deviation -0.121 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.019 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 67 ? ? -113.06 55.21 2 1 ASN A 96 ? B -94.97 40.65 3 1 GLU A 174 ? A 78.80 144.87 4 1 GLU A 174 ? B 80.16 132.26 5 1 MET A 183 ? ? -150.50 61.53 6 1 HIS A 214 ? ? -117.54 -86.07 # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 2084 ? 7.59 . 2 1 O ? A HOH 2092 ? 6.48 . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASP 99 ? CB ? A ASP 99 CB 2 1 Y 1 A ASP 99 ? CG ? A ASP 99 CG 3 1 Y 1 A ASP 99 ? OD1 ? A ASP 99 OD1 4 1 Y 1 A ASP 99 ? OD2 ? A ASP 99 OD2 5 1 Y 1 A ASP 100 ? CB ? A ASP 100 CB 6 1 Y 1 A ASP 100 ? CG ? A ASP 100 CG 7 1 Y 1 A ASP 100 ? OD1 ? A ASP 100 OD1 8 1 Y 1 A ASP 100 ? OD2 ? A ASP 100 OD2 9 1 Y 1 A GLU 101 ? CB ? A GLU 101 CB 10 1 Y 1 A GLU 101 ? CG ? A GLU 101 CG 11 1 Y 1 A GLU 101 ? CD ? A GLU 101 CD 12 1 Y 1 A GLU 101 ? OE1 ? A GLU 101 OE1 13 1 Y 1 A GLU 101 ? OE2 ? A GLU 101 OE2 14 1 Y 1 A GLU 104 ? CB ? A GLU 104 CB 15 1 Y 1 A GLU 104 ? CG ? A GLU 104 CG 16 1 Y 1 A GLU 104 ? CD ? A GLU 104 CD 17 1 Y 1 A GLU 104 ? OE1 ? A GLU 104 OE1 18 1 Y 1 A GLU 104 ? OE2 ? A GLU 104 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 1 ? A ALA 1 2 1 Y 1 A SER 102 ? A SER 102 3 1 Y 1 A SER 103 ? A SER 103 4 1 Y 1 A HIS 216 ? A HIS 216 5 1 Y 1 A HIS 217 ? A HIS 217 6 1 Y 1 A HIS 218 ? A HIS 218 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 EDO C1 C N N 88 EDO O1 O N N 89 EDO C2 C N N 90 EDO O2 O N N 91 EDO H11 H N N 92 EDO H12 H N N 93 EDO HO1 H N N 94 EDO H21 H N N 95 EDO H22 H N N 96 EDO HO2 H N N 97 GLN N N N N 98 GLN CA C N S 99 GLN C C N N 100 GLN O O N N 101 GLN CB C N N 102 GLN CG C N N 103 GLN CD C N N 104 GLN OE1 O N N 105 GLN NE2 N N N 106 GLN OXT O N N 107 GLN H H N N 108 GLN H2 H N N 109 GLN HA H N N 110 GLN HB2 H N N 111 GLN HB3 H N N 112 GLN HG2 H N N 113 GLN HG3 H N N 114 GLN HE21 H N N 115 GLN HE22 H N N 116 GLN HXT H N N 117 GLU N N N N 118 GLU CA C N S 119 GLU C C N N 120 GLU O O N N 121 GLU CB C N N 122 GLU CG C N N 123 GLU CD C N N 124 GLU OE1 O N N 125 GLU OE2 O N N 126 GLU OXT O N N 127 GLU H H N N 128 GLU H2 H N N 129 GLU HA H N N 130 GLU HB2 H N N 131 GLU HB3 H N N 132 GLU HG2 H N N 133 GLU HG3 H N N 134 GLU HE2 H N N 135 GLU HXT H N N 136 GLY N N N N 137 GLY CA C N N 138 GLY C C N N 139 GLY O O N N 140 GLY OXT O N N 141 GLY H H N N 142 GLY H2 H N N 143 GLY HA2 H N N 144 GLY HA3 H N N 145 GLY HXT H N N 146 HIS N N N N 147 HIS CA C N S 148 HIS C C N N 149 HIS O O N N 150 HIS CB C N N 151 HIS CG C Y N 152 HIS ND1 N Y N 153 HIS CD2 C Y N 154 HIS CE1 C Y N 155 HIS NE2 N Y N 156 HIS OXT O N N 157 HIS H H N N 158 HIS H2 H N N 159 HIS HA H N N 160 HIS HB2 H N N 161 HIS HB3 H N N 162 HIS HD1 H N N 163 HIS HD2 H N N 164 HIS HE1 H N N 165 HIS HE2 H N N 166 HIS HXT H N N 167 HOH O O N N 168 HOH H1 H N N 169 HOH H2 H N N 170 ILE N N N N 171 ILE CA C N S 172 ILE C C N N 173 ILE O O N N 174 ILE CB C N S 175 ILE CG1 C N N 176 ILE CG2 C N N 177 ILE CD1 C N N 178 ILE OXT O N N 179 ILE H H N N 180 ILE H2 H N N 181 ILE HA H N N 182 ILE HB H N N 183 ILE HG12 H N N 184 ILE HG13 H N N 185 ILE HG21 H N N 186 ILE HG22 H N N 187 ILE HG23 H N N 188 ILE HD11 H N N 189 ILE HD12 H N N 190 ILE HD13 H N N 191 ILE HXT H N N 192 LEU N N N N 193 LEU CA C N S 194 LEU C C N N 195 LEU O O N N 196 LEU CB C N N 197 LEU CG C N N 198 LEU CD1 C N N 199 LEU CD2 C N N 200 LEU OXT O N N 201 LEU H H N N 202 LEU H2 H N N 203 LEU HA H N N 204 LEU HB2 H N N 205 LEU HB3 H N N 206 LEU HG H N N 207 LEU HD11 H N N 208 LEU HD12 H N N 209 LEU HD13 H N N 210 LEU HD21 H N N 211 LEU HD22 H N N 212 LEU HD23 H N N 213 LEU HXT H N N 214 LYS N N N N 215 LYS CA C N S 216 LYS C C N N 217 LYS O O N N 218 LYS CB C N N 219 LYS CG C N N 220 LYS CD C N N 221 LYS CE C N N 222 LYS NZ N N N 223 LYS OXT O N N 224 LYS H H N N 225 LYS H2 H N N 226 LYS HA H N N 227 LYS HB2 H N N 228 LYS HB3 H N N 229 LYS HG2 H N N 230 LYS HG3 H N N 231 LYS HD2 H N N 232 LYS HD3 H N N 233 LYS HE2 H N N 234 LYS HE3 H N N 235 LYS HZ1 H N N 236 LYS HZ2 H N N 237 LYS HZ3 H N N 238 LYS HXT H N N 239 MET N N N N 240 MET CA C N S 241 MET C C N N 242 MET O O N N 243 MET CB C N N 244 MET CG C N N 245 MET SD S N N 246 MET CE C N N 247 MET OXT O N N 248 MET H H N N 249 MET H2 H N N 250 MET HA H N N 251 MET HB2 H N N 252 MET HB3 H N N 253 MET HG2 H N N 254 MET HG3 H N N 255 MET HE1 H N N 256 MET HE2 H N N 257 MET HE3 H N N 258 MET HXT H N N 259 NAG C1 C N R 260 NAG C2 C N R 261 NAG C3 C N R 262 NAG C4 C N S 263 NAG C5 C N R 264 NAG C6 C N N 265 NAG C7 C N N 266 NAG C8 C N N 267 NAG N2 N N N 268 NAG O1 O N N 269 NAG O3 O N N 270 NAG O4 O N N 271 NAG O5 O N N 272 NAG O6 O N N 273 NAG O7 O N N 274 NAG H1 H N N 275 NAG H2 H N N 276 NAG H3 H N N 277 NAG H4 H N N 278 NAG H5 H N N 279 NAG H61 H N N 280 NAG H62 H N N 281 NAG H81 H N N 282 NAG H82 H N N 283 NAG H83 H N N 284 NAG HN2 H N N 285 NAG HO1 H N N 286 NAG HO3 H N N 287 NAG HO4 H N N 288 NAG HO6 H N N 289 PHE N N N N 290 PHE CA C N S 291 PHE C C N N 292 PHE O O N N 293 PHE CB C N N 294 PHE CG C Y N 295 PHE CD1 C Y N 296 PHE CD2 C Y N 297 PHE CE1 C Y N 298 PHE CE2 C Y N 299 PHE CZ C Y N 300 PHE OXT O N N 301 PHE H H N N 302 PHE H2 H N N 303 PHE HA H N N 304 PHE HB2 H N N 305 PHE HB3 H N N 306 PHE HD1 H N N 307 PHE HD2 H N N 308 PHE HE1 H N N 309 PHE HE2 H N N 310 PHE HZ H N N 311 PHE HXT H N N 312 PRO N N N N 313 PRO CA C N S 314 PRO C C N N 315 PRO O O N N 316 PRO CB C N N 317 PRO CG C N N 318 PRO CD C N N 319 PRO OXT O N N 320 PRO H H N N 321 PRO HA H N N 322 PRO HB2 H N N 323 PRO HB3 H N N 324 PRO HG2 H N N 325 PRO HG3 H N N 326 PRO HD2 H N N 327 PRO HD3 H N N 328 PRO HXT H N N 329 SER N N N N 330 SER CA C N S 331 SER C C N N 332 SER O O N N 333 SER CB C N N 334 SER OG O N N 335 SER OXT O N N 336 SER H H N N 337 SER H2 H N N 338 SER HA H N N 339 SER HB2 H N N 340 SER HB3 H N N 341 SER HG H N N 342 SER HXT H N N 343 THR N N N N 344 THR CA C N S 345 THR C C N N 346 THR O O N N 347 THR CB C N R 348 THR OG1 O N N 349 THR CG2 C N N 350 THR OXT O N N 351 THR H H N N 352 THR H2 H N N 353 THR HA H N N 354 THR HB H N N 355 THR HG1 H N N 356 THR HG21 H N N 357 THR HG22 H N N 358 THR HG23 H N N 359 THR HXT H N N 360 TRP N N N N 361 TRP CA C N S 362 TRP C C N N 363 TRP O O N N 364 TRP CB C N N 365 TRP CG C Y N 366 TRP CD1 C Y N 367 TRP CD2 C Y N 368 TRP NE1 N Y N 369 TRP CE2 C Y N 370 TRP CE3 C Y N 371 TRP CZ2 C Y N 372 TRP CZ3 C Y N 373 TRP CH2 C Y N 374 TRP OXT O N N 375 TRP H H N N 376 TRP H2 H N N 377 TRP HA H N N 378 TRP HB2 H N N 379 TRP HB3 H N N 380 TRP HD1 H N N 381 TRP HE1 H N N 382 TRP HE3 H N N 383 TRP HZ2 H N N 384 TRP HZ3 H N N 385 TRP HH2 H N N 386 TRP HXT H N N 387 TYR N N N N 388 TYR CA C N S 389 TYR C C N N 390 TYR O O N N 391 TYR CB C N N 392 TYR CG C Y N 393 TYR CD1 C Y N 394 TYR CD2 C Y N 395 TYR CE1 C Y N 396 TYR CE2 C Y N 397 TYR CZ C Y N 398 TYR OH O N N 399 TYR OXT O N N 400 TYR H H N N 401 TYR H2 H N N 402 TYR HA H N N 403 TYR HB2 H N N 404 TYR HB3 H N N 405 TYR HD1 H N N 406 TYR HD2 H N N 407 TYR HE1 H N N 408 TYR HE2 H N N 409 TYR HH H N N 410 TYR HXT H N N 411 VAL N N N N 412 VAL CA C N S 413 VAL C C N N 414 VAL O O N N 415 VAL CB C N N 416 VAL CG1 C N N 417 VAL CG2 C N N 418 VAL OXT O N N 419 VAL H H N N 420 VAL H2 H N N 421 VAL HA H N N 422 VAL HB H N N 423 VAL HG11 H N N 424 VAL HG12 H N N 425 VAL HG13 H N N 426 VAL HG21 H N N 427 VAL HG22 H N N 428 VAL HG23 H N N 429 VAL HXT H N N 430 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 EDO C1 O1 sing N N 83 EDO C1 C2 sing N N 84 EDO C1 H11 sing N N 85 EDO C1 H12 sing N N 86 EDO O1 HO1 sing N N 87 EDO C2 O2 sing N N 88 EDO C2 H21 sing N N 89 EDO C2 H22 sing N N 90 EDO O2 HO2 sing N N 91 GLN N CA sing N N 92 GLN N H sing N N 93 GLN N H2 sing N N 94 GLN CA C sing N N 95 GLN CA CB sing N N 96 GLN CA HA sing N N 97 GLN C O doub N N 98 GLN C OXT sing N N 99 GLN CB CG sing N N 100 GLN CB HB2 sing N N 101 GLN CB HB3 sing N N 102 GLN CG CD sing N N 103 GLN CG HG2 sing N N 104 GLN CG HG3 sing N N 105 GLN CD OE1 doub N N 106 GLN CD NE2 sing N N 107 GLN NE2 HE21 sing N N 108 GLN NE2 HE22 sing N N 109 GLN OXT HXT sing N N 110 GLU N CA sing N N 111 GLU N H sing N N 112 GLU N H2 sing N N 113 GLU CA C sing N N 114 GLU CA CB sing N N 115 GLU CA HA sing N N 116 GLU C O doub N N 117 GLU C OXT sing N N 118 GLU CB CG sing N N 119 GLU CB HB2 sing N N 120 GLU CB HB3 sing N N 121 GLU CG CD sing N N 122 GLU CG HG2 sing N N 123 GLU CG HG3 sing N N 124 GLU CD OE1 doub N N 125 GLU CD OE2 sing N N 126 GLU OE2 HE2 sing N N 127 GLU OXT HXT sing N N 128 GLY N CA sing N N 129 GLY N H sing N N 130 GLY N H2 sing N N 131 GLY CA C sing N N 132 GLY CA HA2 sing N N 133 GLY CA HA3 sing N N 134 GLY C O doub N N 135 GLY C OXT sing N N 136 GLY OXT HXT sing N N 137 HIS N CA sing N N 138 HIS N H sing N N 139 HIS N H2 sing N N 140 HIS CA C sing N N 141 HIS CA CB sing N N 142 HIS CA HA sing N N 143 HIS C O doub N N 144 HIS C OXT sing N N 145 HIS CB CG sing N N 146 HIS CB HB2 sing N N 147 HIS CB HB3 sing N N 148 HIS CG ND1 sing Y N 149 HIS CG CD2 doub Y N 150 HIS ND1 CE1 doub Y N 151 HIS ND1 HD1 sing N N 152 HIS CD2 NE2 sing Y N 153 HIS CD2 HD2 sing N N 154 HIS CE1 NE2 sing Y N 155 HIS CE1 HE1 sing N N 156 HIS NE2 HE2 sing N N 157 HIS OXT HXT sing N N 158 HOH O H1 sing N N 159 HOH O H2 sing N N 160 ILE N CA sing N N 161 ILE N H sing N N 162 ILE N H2 sing N N 163 ILE CA C sing N N 164 ILE CA CB sing N N 165 ILE CA HA sing N N 166 ILE C O doub N N 167 ILE C OXT sing N N 168 ILE CB CG1 sing N N 169 ILE CB CG2 sing N N 170 ILE CB HB sing N N 171 ILE CG1 CD1 sing N N 172 ILE CG1 HG12 sing N N 173 ILE CG1 HG13 sing N N 174 ILE CG2 HG21 sing N N 175 ILE CG2 HG22 sing N N 176 ILE CG2 HG23 sing N N 177 ILE CD1 HD11 sing N N 178 ILE CD1 HD12 sing N N 179 ILE CD1 HD13 sing N N 180 ILE OXT HXT sing N N 181 LEU N CA sing N N 182 LEU N H sing N N 183 LEU N H2 sing N N 184 LEU CA C sing N N 185 LEU CA CB sing N N 186 LEU CA HA sing N N 187 LEU C O doub N N 188 LEU C OXT sing N N 189 LEU CB CG sing N N 190 LEU CB HB2 sing N N 191 LEU CB HB3 sing N N 192 LEU CG CD1 sing N N 193 LEU CG CD2 sing N N 194 LEU CG HG sing N N 195 LEU CD1 HD11 sing N N 196 LEU CD1 HD12 sing N N 197 LEU CD1 HD13 sing N N 198 LEU CD2 HD21 sing N N 199 LEU CD2 HD22 sing N N 200 LEU CD2 HD23 sing N N 201 LEU OXT HXT sing N N 202 LYS N CA sing N N 203 LYS N H sing N N 204 LYS N H2 sing N N 205 LYS CA C sing N N 206 LYS CA CB sing N N 207 LYS CA HA sing N N 208 LYS C O doub N N 209 LYS C OXT sing N N 210 LYS CB CG sing N N 211 LYS CB HB2 sing N N 212 LYS CB HB3 sing N N 213 LYS CG CD sing N N 214 LYS CG HG2 sing N N 215 LYS CG HG3 sing N N 216 LYS CD CE sing N N 217 LYS CD HD2 sing N N 218 LYS CD HD3 sing N N 219 LYS CE NZ sing N N 220 LYS CE HE2 sing N N 221 LYS CE HE3 sing N N 222 LYS NZ HZ1 sing N N 223 LYS NZ HZ2 sing N N 224 LYS NZ HZ3 sing N N 225 LYS OXT HXT sing N N 226 MET N CA sing N N 227 MET N H sing N N 228 MET N H2 sing N N 229 MET CA C sing N N 230 MET CA CB sing N N 231 MET CA HA sing N N 232 MET C O doub N N 233 MET C OXT sing N N 234 MET CB CG sing N N 235 MET CB HB2 sing N N 236 MET CB HB3 sing N N 237 MET CG SD sing N N 238 MET CG HG2 sing N N 239 MET CG HG3 sing N N 240 MET SD CE sing N N 241 MET CE HE1 sing N N 242 MET CE HE2 sing N N 243 MET CE HE3 sing N N 244 MET OXT HXT sing N N 245 NAG C1 C2 sing N N 246 NAG C1 O1 sing N N 247 NAG C1 O5 sing N N 248 NAG C1 H1 sing N N 249 NAG C2 C3 sing N N 250 NAG C2 N2 sing N N 251 NAG C2 H2 sing N N 252 NAG C3 C4 sing N N 253 NAG C3 O3 sing N N 254 NAG C3 H3 sing N N 255 NAG C4 C5 sing N N 256 NAG C4 O4 sing N N 257 NAG C4 H4 sing N N 258 NAG C5 C6 sing N N 259 NAG C5 O5 sing N N 260 NAG C5 H5 sing N N 261 NAG C6 O6 sing N N 262 NAG C6 H61 sing N N 263 NAG C6 H62 sing N N 264 NAG C7 C8 sing N N 265 NAG C7 N2 sing N N 266 NAG C7 O7 doub N N 267 NAG C8 H81 sing N N 268 NAG C8 H82 sing N N 269 NAG C8 H83 sing N N 270 NAG N2 HN2 sing N N 271 NAG O1 HO1 sing N N 272 NAG O3 HO3 sing N N 273 NAG O4 HO4 sing N N 274 NAG O6 HO6 sing N N 275 PHE N CA sing N N 276 PHE N H sing N N 277 PHE N H2 sing N N 278 PHE CA C sing N N 279 PHE CA CB sing N N 280 PHE CA HA sing N N 281 PHE C O doub N N 282 PHE C OXT sing N N 283 PHE CB CG sing N N 284 PHE CB HB2 sing N N 285 PHE CB HB3 sing N N 286 PHE CG CD1 doub Y N 287 PHE CG CD2 sing Y N 288 PHE CD1 CE1 sing Y N 289 PHE CD1 HD1 sing N N 290 PHE CD2 CE2 doub Y N 291 PHE CD2 HD2 sing N N 292 PHE CE1 CZ doub Y N 293 PHE CE1 HE1 sing N N 294 PHE CE2 CZ sing Y N 295 PHE CE2 HE2 sing N N 296 PHE CZ HZ sing N N 297 PHE OXT HXT sing N N 298 PRO N CA sing N N 299 PRO N CD sing N N 300 PRO N H sing N N 301 PRO CA C sing N N 302 PRO CA CB sing N N 303 PRO CA HA sing N N 304 PRO C O doub N N 305 PRO C OXT sing N N 306 PRO CB CG sing N N 307 PRO CB HB2 sing N N 308 PRO CB HB3 sing N N 309 PRO CG CD sing N N 310 PRO CG HG2 sing N N 311 PRO CG HG3 sing N N 312 PRO CD HD2 sing N N 313 PRO CD HD3 sing N N 314 PRO OXT HXT sing N N 315 SER N CA sing N N 316 SER N H sing N N 317 SER N H2 sing N N 318 SER CA C sing N N 319 SER CA CB sing N N 320 SER CA HA sing N N 321 SER C O doub N N 322 SER C OXT sing N N 323 SER CB OG sing N N 324 SER CB HB2 sing N N 325 SER CB HB3 sing N N 326 SER OG HG sing N N 327 SER OXT HXT sing N N 328 THR N CA sing N N 329 THR N H sing N N 330 THR N H2 sing N N 331 THR CA C sing N N 332 THR CA CB sing N N 333 THR CA HA sing N N 334 THR C O doub N N 335 THR C OXT sing N N 336 THR CB OG1 sing N N 337 THR CB CG2 sing N N 338 THR CB HB sing N N 339 THR OG1 HG1 sing N N 340 THR CG2 HG21 sing N N 341 THR CG2 HG22 sing N N 342 THR CG2 HG23 sing N N 343 THR OXT HXT sing N N 344 TRP N CA sing N N 345 TRP N H sing N N 346 TRP N H2 sing N N 347 TRP CA C sing N N 348 TRP CA CB sing N N 349 TRP CA HA sing N N 350 TRP C O doub N N 351 TRP C OXT sing N N 352 TRP CB CG sing N N 353 TRP CB HB2 sing N N 354 TRP CB HB3 sing N N 355 TRP CG CD1 doub Y N 356 TRP CG CD2 sing Y N 357 TRP CD1 NE1 sing Y N 358 TRP CD1 HD1 sing N N 359 TRP CD2 CE2 doub Y N 360 TRP CD2 CE3 sing Y N 361 TRP NE1 CE2 sing Y N 362 TRP NE1 HE1 sing N N 363 TRP CE2 CZ2 sing Y N 364 TRP CE3 CZ3 doub Y N 365 TRP CE3 HE3 sing N N 366 TRP CZ2 CH2 doub Y N 367 TRP CZ2 HZ2 sing N N 368 TRP CZ3 CH2 sing Y N 369 TRP CZ3 HZ3 sing N N 370 TRP CH2 HH2 sing N N 371 TRP OXT HXT sing N N 372 TYR N CA sing N N 373 TYR N H sing N N 374 TYR N H2 sing N N 375 TYR CA C sing N N 376 TYR CA CB sing N N 377 TYR CA HA sing N N 378 TYR C O doub N N 379 TYR C OXT sing N N 380 TYR CB CG sing N N 381 TYR CB HB2 sing N N 382 TYR CB HB3 sing N N 383 TYR CG CD1 doub Y N 384 TYR CG CD2 sing Y N 385 TYR CD1 CE1 sing Y N 386 TYR CD1 HD1 sing N N 387 TYR CD2 CE2 doub Y N 388 TYR CD2 HD2 sing N N 389 TYR CE1 CZ doub Y N 390 TYR CE1 HE1 sing N N 391 TYR CE2 CZ sing Y N 392 TYR CE2 HE2 sing N N 393 TYR CZ OH sing N N 394 TYR OH HH sing N N 395 TYR OXT HXT sing N N 396 VAL N CA sing N N 397 VAL N H sing N N 398 VAL N H2 sing N N 399 VAL CA C sing N N 400 VAL CA CB sing N N 401 VAL CA HA sing N N 402 VAL C O doub N N 403 VAL C OXT sing N N 404 VAL CB CG1 sing N N 405 VAL CB CG2 sing N N 406 VAL CB HB sing N N 407 VAL CG1 HG11 sing N N 408 VAL CG1 HG12 sing N N 409 VAL CG1 HG13 sing N N 410 VAL CG2 HG21 sing N N 411 VAL CG2 HG22 sing N N 412 VAL CG2 HG23 sing N N 413 VAL OXT HXT sing N N 414 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 3 1,2-ETHANEDIOL EDO 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2QC1 _pdbx_initial_refinement_model.details 'PDB ENTRY 2QC1' #