HEADER TRANSCRIPTION 25-APR-14 4D0F TITLE HUMAN NOTCH1 EGF DOMAINS 11-13 MUTANT T466A COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: EGF 11-13; COMPND 5 SYNONYM: NOTCH 1, HN1, TRANSLOCATION-ASSOCIATED NOTCH PROTEIN TAN-1, COMPND 6 HUMAN NOTCH; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PQE30 KEYWDS TRANSCRIPTION, METAL-BINDING, TRANSMEMBRANE, DEVELOPMENTAL, PROTEIN, KEYWDS 2 NOTCH SIGNALING PATHWAY, DIFFERENTIATION, PHOSPHORYLATION, EGF-LIKE KEYWDS 3 DOMAIN, REGULATION, RECEPTOR, ACTIVATOR, ANK REPEAT, SIGNALLING, KEYWDS 4 GLYCOPROTEIN, EXTRACELLULAR, JAGGED, NUCLEUS, MEMBRANE EXPDTA X-RAY DIFFRACTION AUTHOR P.TAYLOR,H.TAKEUCHI,D.SHEPPARD,C.CHILLAKURI,S.M.LEA,R.S.HALTIWANGER, AUTHOR 2 P.A.HANDFORD REVDAT 5 20-DEC-23 4D0F 1 REMARK LINK REVDAT 4 07-FEB-18 4D0F 1 AUTHOR REVDAT 3 04-JUN-14 4D0F 1 JRNL REVDAT 2 28-MAY-14 4D0F 1 HETATM REVDAT 1 21-MAY-14 4D0F 0 JRNL AUTH P.TAYLOR,H.TAKEUCHI,D.SHEPPARD,C.CHILLAKURI,S.M.LEA, JRNL AUTH 2 R.S.HALTIWANGER,P.A.HANDFORD JRNL TITL FRINGE-MEDIATED EXTENSION OF O-LINKED FUCOSE IN THE JRNL TITL 2 LIGAND-BINDING REGION OF NOTCH1 INCREASES BINDING TO JRNL TITL 3 MAMMALIAN NOTCH LIGANDS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 111 7290 2014 JRNL REFN ISSN 0027-8424 JRNL PMID 24803430 JRNL DOI 10.1073/PNAS.1319683111 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 3956 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.470 REMARK 3 FREE R VALUE TEST SET COUNT : 177 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 5 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.13 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.60 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 1094 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2491 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1035 REMARK 3 BIN R VALUE (WORKING SET) : 0.2455 REMARK 3 BIN FREE R VALUE : 0.3104 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.39 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 59 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 933 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 13 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 55.53 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 79.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -8.39540 REMARK 3 B22 (A**2) : -8.39540 REMARK 3 B33 (A**2) : 16.79080 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.525 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.384 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 2.048 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.363 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.917 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.872 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 977 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 1334 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 331 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 36 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 140 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 977 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 2 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 125 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 1097 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.33 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.77 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.91 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 17.3436 -18.4340 0.8334 REMARK 3 T TENSOR REMARK 3 T11: 0.3310 T22: 0.1066 REMARK 3 T33: -0.3662 T12: -0.3202 REMARK 3 T13: 0.0446 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 0.8735 L22: -0.0884 REMARK 3 L33: 21.0225 L12: 0.1756 REMARK 3 L13: -0.9775 L23: -0.9914 REMARK 3 S TENSOR REMARK 3 S11: 0.0528 S12: 0.0886 S13: -0.0870 REMARK 3 S21: 0.1100 S22: 0.1050 S23: -0.0656 REMARK 3 S31: -0.8620 S32: -0.2311 S33: -0.1578 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4D0F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-APR-14. REMARK 100 THE DEPOSITION ID IS D_1290059343. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.75 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 3956 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 63.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.44000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2VJ3 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 4.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.21000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 84.42000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 63.31500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 105.52500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 21.10500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 42.21000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 84.42000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 105.52500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 63.31500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 21.10500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -42.21000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 409 REMARK 465 ALA A 535 REMARK 465 GLN A 536 REMARK 465 LYS A 537 REMARK 465 MET A 538 REMARK 465 VAL A 539 REMARK 465 TRP A 540 REMARK 465 ASN A 541 REMARK 465 HIS A 542 REMARK 465 ARG A 543 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ALA A 410 CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O PHE A 474 NH2 ARG A 504 10554 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 522 C - N - CA ANGL. DEV. = 13.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 411 139.49 -171.02 REMARK 500 SER A 435 -151.69 -158.17 REMARK 500 LYS A 508 -165.51 -124.40 REMARK 500 ILE A 532 43.48 -66.64 REMARK 500 ILE A 532 43.48 -66.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1536 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 413 O REMARK 620 2 GLU A 415 OE1 72.0 REMARK 620 3 ASN A 431 OD1 76.7 75.0 REMARK 620 4 THR A 432 O 129.4 135.3 74.1 REMARK 620 5 SER A 435 O 142.9 74.6 79.4 68.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1535 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 452 OD1 REMARK 620 2 VAL A 453 O 80.7 REMARK 620 3 GLU A 455 OE1 140.5 73.5 REMARK 620 4 ASP A 469 OD1 129.3 77.2 73.4 REMARK 620 5 GLN A 470 O 123.9 150.6 77.0 94.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1537 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 490 OD1 REMARK 620 2 THR A 491 O 80.4 REMARK 620 3 GLU A 493 OE1 138.4 90.3 REMARK 620 4 ASP A 507 OD1 137.5 98.4 83.9 REMARK 620 5 ASP A 507 OD2 80.4 104.7 140.8 58.6 REMARK 620 6 LYS A 508 O 92.9 158.3 81.0 100.3 94.3 REMARK 620 7 HOH A2005 O 69.4 87.7 69.7 153.0 145.0 70.7 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1535 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1536 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1537 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1538 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4D0E RELATED DB: PDB REMARK 900 HUMAN NOTCH-1 EGFS 11-13 FUCOSE,GLCNAC DBREF 4D0F A 411 526 UNP P46531 NOTC1_HUMAN 411 526 SEQADV 4D0F SER A 409 UNP P46531 EXPRESSION TAG SEQADV 4D0F ALA A 410 UNP P46531 EXPRESSION TAG SEQADV 4D0F VAL A 527 UNP P46531 EXPRESSION TAG SEQADV 4D0F ASP A 528 UNP P46531 EXPRESSION TAG SEQADV 4D0F LEU A 529 UNP P46531 EXPRESSION TAG SEQADV 4D0F HIS A 530 UNP P46531 EXPRESSION TAG SEQADV 4D0F HIS A 531 UNP P46531 EXPRESSION TAG SEQADV 4D0F ILE A 532 UNP P46531 EXPRESSION TAG SEQADV 4D0F LEU A 533 UNP P46531 EXPRESSION TAG SEQADV 4D0F ASP A 534 UNP P46531 EXPRESSION TAG SEQADV 4D0F ALA A 535 UNP P46531 EXPRESSION TAG SEQADV 4D0F GLN A 536 UNP P46531 EXPRESSION TAG SEQADV 4D0F LYS A 537 UNP P46531 EXPRESSION TAG SEQADV 4D0F MET A 538 UNP P46531 EXPRESSION TAG SEQADV 4D0F VAL A 539 UNP P46531 EXPRESSION TAG SEQADV 4D0F TRP A 540 UNP P46531 EXPRESSION TAG SEQADV 4D0F ASN A 541 UNP P46531 EXPRESSION TAG SEQADV 4D0F HIS A 542 UNP P46531 EXPRESSION TAG SEQADV 4D0F ARG A 543 UNP P46531 EXPRESSION TAG SEQADV 4D0F ALA A 466 UNP P46531 THR 466 ENGINEERED MUTATION SEQRES 1 A 135 SER ALA GLN ASP VAL ASP GLU CYS SER LEU GLY ALA ASN SEQRES 2 A 135 PRO CYS GLU HIS ALA GLY LYS CYS ILE ASN THR LEU GLY SEQRES 3 A 135 SER PHE GLU CYS GLN CYS LEU GLN GLY TYR THR GLY PRO SEQRES 4 A 135 ARG CYS GLU ILE ASP VAL ASN GLU CYS VAL SER ASN PRO SEQRES 5 A 135 CYS GLN ASN ASP ALA ALA CYS LEU ASP GLN ILE GLY GLU SEQRES 6 A 135 PHE GLN CYS ILE CYS MET PRO GLY TYR GLU GLY VAL HIS SEQRES 7 A 135 CYS GLU VAL ASN THR ASP GLU CYS ALA SER SER PRO CYS SEQRES 8 A 135 LEU HIS ASN GLY ARG CYS LEU ASP LYS ILE ASN GLU PHE SEQRES 9 A 135 GLN CYS GLU CYS PRO THR GLY PHE THR GLY HIS LEU CYS SEQRES 10 A 135 GLN VAL ASP LEU HIS HIS ILE LEU ASP ALA GLN LYS MET SEQRES 11 A 135 VAL TRP ASN HIS ARG HET CA A1535 1 HET CA A1536 1 HET CA A1537 1 HET EDO A1538 10 HETNAM CA CALCIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 CA 3(CA 2+) FORMUL 5 EDO C2 H6 O2 FORMUL 6 HOH *13(H2 O) HELIX 1 1 ASP A 414 LEU A 418 5 5 SHEET 1 AA 2 LYS A 428 THR A 432 0 SHEET 2 AA 2 SER A 435 GLN A 439 -1 O SER A 435 N THR A 432 SHEET 1 AB 2 TYR A 444 THR A 445 0 SHEET 2 AB 2 ILE A 451 ASP A 452 -1 O ILE A 451 N THR A 445 SHEET 1 AC 2 ALA A 466 GLN A 470 0 SHEET 2 AC 2 GLU A 473 ILE A 477 -1 O GLU A 473 N GLN A 470 SHEET 1 AD 2 TYR A 482 GLU A 483 0 SHEET 2 AD 2 VAL A 489 ASN A 490 -1 O VAL A 489 N GLU A 483 SHEET 1 AE 2 ARG A 504 ASP A 507 0 SHEET 2 AE 2 PHE A 512 GLU A 515 -1 O GLN A 513 N LEU A 506 SHEET 1 AF 2 PHE A 520 THR A 521 0 SHEET 2 AF 2 VAL A 527 ASP A 528 -1 O VAL A 527 N THR A 521 SSBOND 1 CYS A 416 CYS A 429 1555 1555 2.02 SSBOND 2 CYS A 423 CYS A 438 1555 1555 2.03 SSBOND 3 CYS A 440 CYS A 449 1555 1555 2.04 SSBOND 4 CYS A 456 CYS A 467 1555 1555 2.04 SSBOND 5 CYS A 461 CYS A 476 1555 1555 2.03 SSBOND 6 CYS A 478 CYS A 487 1555 1555 2.03 SSBOND 7 CYS A 494 CYS A 505 1555 1555 2.04 SSBOND 8 CYS A 499 CYS A 514 1555 1555 2.03 SSBOND 9 CYS A 516 CYS A 525 1555 1555 2.04 LINK O VAL A 413 CA CA A1536 1555 1555 2.53 LINK OE1 GLU A 415 CA CA A1536 1555 1555 2.43 LINK OD1 ASN A 431 CA CA A1536 1555 1555 2.82 LINK O THR A 432 CA CA A1536 1555 1555 2.39 LINK O SER A 435 CA CA A1536 1555 1555 2.30 LINK OD1 ASP A 452 CA CA A1535 1555 1555 2.11 LINK O VAL A 453 CA CA A1535 1555 1555 2.44 LINK OE1 GLU A 455 CA CA A1535 1555 1555 2.40 LINK OD1 ASP A 469 CA CA A1535 1555 1555 2.59 LINK O GLN A 470 CA CA A1535 1555 1555 2.24 LINK OD1 ASN A 490 CA CA A1537 1555 1555 2.59 LINK O THR A 491 CA CA A1537 1555 1555 2.18 LINK OE1 GLU A 493 CA CA A1537 1555 1555 2.16 LINK OD1 ASP A 507 CA CA A1537 1555 1555 2.17 LINK OD2 ASP A 507 CA CA A1537 1555 1555 2.33 LINK O LYS A 508 CA CA A1537 1555 1555 2.46 LINK CA CA A1537 O HOH A2005 1555 1555 2.24 CISPEP 1 ALA A 410 GLN A 411 0 4.36 CISPEP 2 THR A 521 GLY A 522 0 6.83 SITE 1 AC1 5 ASP A 452 VAL A 453 GLU A 455 ASP A 469 SITE 2 AC1 5 GLN A 470 SITE 1 AC2 5 VAL A 413 GLU A 415 ASN A 431 THR A 432 SITE 2 AC2 5 SER A 435 SITE 1 AC3 6 ASN A 490 THR A 491 GLU A 493 ASP A 507 SITE 2 AC3 6 LYS A 508 HOH A2005 SITE 1 AC4 1 CYS A 467 CRYST1 62.620 62.620 126.630 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015969 0.009220 0.000000 0.00000 SCALE2 0.000000 0.018440 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007897 0.00000