data_4D63 # _entry.id 4D63 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4D63 PDBE EBI-62265 WWPDB D_1290062265 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4D62 _pdbx_database_related.content_type unspecified _pdbx_database_related.details 'STRUCTURE OF THE CARBOXY-TERMINAL DOMAIN OF THE TURKEY TYPE 3 SIADENOVIRUS FIBRE, AVIRULENT FORM COMPLEXED WITH 3-SIALYLLACTOSE.' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4D63 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2014-11-08 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Singh, A.K.' 1 'van Raaij, M.J.' 2 # _citation.id primary _citation.title 'Structure and Sialyllactose Binding of the Carboxy-Terminal Head Domain of the Fibre from a Siadenovirus, Turkey Adenovirus 3.' _citation.journal_abbrev 'PLoS ONE' _citation.journal_volume 10 _citation.page_first e0139339 _citation.page_last e0139339 _citation.year 2015 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1932-6203 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 26418008 _citation.pdbx_database_id_DOI 10.1371/journal.pone.0139339 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Singh, A.K.' 1 ? primary 'Berbis, M.A.' 2 ? primary 'Ballmann, M.Z.' 3 ? primary 'Kilcoyne, M.' 4 ? primary 'Menendez, M.' 5 ? primary 'Nguyen, T.H.' 6 ? primary 'Joshi, L.' 7 ? primary 'Canada, F.J.' 8 ? primary 'Jimenez-Barbero, J.' 9 ? primary 'Benko, M.' 10 ? primary 'Harrach, B.' 11 ? primary 'van Raaij, M.J.' 12 ? # _cell.entry_id 4D63 _cell.length_a 98.460 _cell.length_b 98.460 _cell.length_c 98.460 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4D63 _symmetry.space_group_name_H-M 'I 2 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'FIBER KNOB DOMAIN' 20611.973 1 ? ? 'HEAD DOMAIN, RESIDUES 15-165' ? 2 non-polymer man 'N-acetyl-alpha-neuraminic acid' 309.270 1 ? ? ? ? 3 water nat water 18.015 60 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'TURKEY ADENOVIRUS TYPE 3 FIBRE' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGPPTTMVTGTVSPGRATNGQFVTKTAKVLRYKFVRWDALLIIQF IDNIGVMENPTFYRNKSIELRSADFLSPMLNNTYIVPLNGGVRVESPTIPVQLEVILENNSSFIQVGFVRLTVKNGNPHM IIQCNPVPGNIKMIKIKSVMLFTCLIG ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGPPTTMVTGTVSPGRATNGQFVTKTAKVLRYKFVRWDALLIIQF IDNIGVMENPTFYRNKSIELRSADFLSPMLNNTYIVPLNGGVRVESPTIPVQLEVILENNSSFIQVGFVRLTVKNGNPHM IIQCNPVPGNIKMIKIKSVMLFTCLIG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 SER n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 SER n 1 12 SER n 1 13 GLY n 1 14 LEU n 1 15 VAL n 1 16 PRO n 1 17 ARG n 1 18 GLY n 1 19 SER n 1 20 HIS n 1 21 MET n 1 22 ALA n 1 23 SER n 1 24 MET n 1 25 THR n 1 26 GLY n 1 27 GLY n 1 28 GLN n 1 29 GLN n 1 30 MET n 1 31 GLY n 1 32 ARG n 1 33 GLY n 1 34 SER n 1 35 GLU n 1 36 PHE n 1 37 GLY n 1 38 PRO n 1 39 PRO n 1 40 THR n 1 41 THR n 1 42 MET n 1 43 VAL n 1 44 THR n 1 45 GLY n 1 46 THR n 1 47 VAL n 1 48 SER n 1 49 PRO n 1 50 GLY n 1 51 ARG n 1 52 ALA n 1 53 THR n 1 54 ASN n 1 55 GLY n 1 56 GLN n 1 57 PHE n 1 58 VAL n 1 59 THR n 1 60 LYS n 1 61 THR n 1 62 ALA n 1 63 LYS n 1 64 VAL n 1 65 LEU n 1 66 ARG n 1 67 TYR n 1 68 LYS n 1 69 PHE n 1 70 VAL n 1 71 ARG n 1 72 TRP n 1 73 ASP n 1 74 ALA n 1 75 LEU n 1 76 LEU n 1 77 ILE n 1 78 ILE n 1 79 GLN n 1 80 PHE n 1 81 ILE n 1 82 ASP n 1 83 ASN n 1 84 ILE n 1 85 GLY n 1 86 VAL n 1 87 MET n 1 88 GLU n 1 89 ASN n 1 90 PRO n 1 91 THR n 1 92 PHE n 1 93 TYR n 1 94 ARG n 1 95 ASN n 1 96 LYS n 1 97 SER n 1 98 ILE n 1 99 GLU n 1 100 LEU n 1 101 ARG n 1 102 SER n 1 103 ALA n 1 104 ASP n 1 105 PHE n 1 106 LEU n 1 107 SER n 1 108 PRO n 1 109 MET n 1 110 LEU n 1 111 ASN n 1 112 ASN n 1 113 THR n 1 114 TYR n 1 115 ILE n 1 116 VAL n 1 117 PRO n 1 118 LEU n 1 119 ASN n 1 120 GLY n 1 121 GLY n 1 122 VAL n 1 123 ARG n 1 124 VAL n 1 125 GLU n 1 126 SER n 1 127 PRO n 1 128 THR n 1 129 ILE n 1 130 PRO n 1 131 VAL n 1 132 GLN n 1 133 LEU n 1 134 GLU n 1 135 VAL n 1 136 ILE n 1 137 LEU n 1 138 GLU n 1 139 ASN n 1 140 ASN n 1 141 SER n 1 142 SER n 1 143 PHE n 1 144 ILE n 1 145 GLN n 1 146 VAL n 1 147 GLY n 1 148 PHE n 1 149 VAL n 1 150 ARG n 1 151 LEU n 1 152 THR n 1 153 VAL n 1 154 LYS n 1 155 ASN n 1 156 GLY n 1 157 ASN n 1 158 PRO n 1 159 HIS n 1 160 MET n 1 161 ILE n 1 162 ILE n 1 163 GLN n 1 164 CYS n 1 165 ASN n 1 166 PRO n 1 167 VAL n 1 168 PRO n 1 169 GLY n 1 170 ASN n 1 171 ILE n 1 172 LYS n 1 173 MET n 1 174 ILE n 1 175 LYS n 1 176 ILE n 1 177 LYS n 1 178 SER n 1 179 VAL n 1 180 MET n 1 181 LEU n 1 182 PHE n 1 183 THR n 1 184 CYS n 1 185 LEU n 1 186 ILE n 1 187 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'AVIRULENT TURKEY HEMORRHAGIC ENTERITIS VIRUS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 318490 _entity_src_gen.pdbx_gene_src_variant 'AVIRULENT FORM' _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET28A _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'ARKO LABORATORIES, JEWELL IA, USA' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q2TLC1_9ADEN _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession Q2TLC1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4D63 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 37 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 187 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q2TLC1 _struct_ref_seq.db_align_beg 304 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 454 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 304 _struct_ref_seq.pdbx_auth_seq_align_end 454 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4D63 MET A 1 ? UNP Q2TLC1 ? ? 'expression tag' 268 1 1 4D63 GLY A 2 ? UNP Q2TLC1 ? ? 'expression tag' 269 2 1 4D63 SER A 3 ? UNP Q2TLC1 ? ? 'expression tag' 270 3 1 4D63 SER A 4 ? UNP Q2TLC1 ? ? 'expression tag' 271 4 1 4D63 HIS A 5 ? UNP Q2TLC1 ? ? 'expression tag' 272 5 1 4D63 HIS A 6 ? UNP Q2TLC1 ? ? 'expression tag' 273 6 1 4D63 HIS A 7 ? UNP Q2TLC1 ? ? 'expression tag' 274 7 1 4D63 HIS A 8 ? UNP Q2TLC1 ? ? 'expression tag' 275 8 1 4D63 HIS A 9 ? UNP Q2TLC1 ? ? 'expression tag' 276 9 1 4D63 HIS A 10 ? UNP Q2TLC1 ? ? 'expression tag' 277 10 1 4D63 SER A 11 ? UNP Q2TLC1 ? ? 'expression tag' 278 11 1 4D63 SER A 12 ? UNP Q2TLC1 ? ? 'expression tag' 279 12 1 4D63 GLY A 13 ? UNP Q2TLC1 ? ? 'expression tag' 280 13 1 4D63 LEU A 14 ? UNP Q2TLC1 ? ? 'expression tag' 281 14 1 4D63 VAL A 15 ? UNP Q2TLC1 ? ? 'expression tag' 282 15 1 4D63 PRO A 16 ? UNP Q2TLC1 ? ? 'expression tag' 283 16 1 4D63 ARG A 17 ? UNP Q2TLC1 ? ? 'expression tag' 284 17 1 4D63 GLY A 18 ? UNP Q2TLC1 ? ? 'expression tag' 285 18 1 4D63 SER A 19 ? UNP Q2TLC1 ? ? 'expression tag' 286 19 1 4D63 HIS A 20 ? UNP Q2TLC1 ? ? 'expression tag' 287 20 1 4D63 MET A 21 ? UNP Q2TLC1 ? ? 'expression tag' 288 21 1 4D63 ALA A 22 ? UNP Q2TLC1 ? ? 'expression tag' 289 22 1 4D63 SER A 23 ? UNP Q2TLC1 ? ? 'expression tag' 290 23 1 4D63 MET A 24 ? UNP Q2TLC1 ? ? 'expression tag' 291 24 1 4D63 THR A 25 ? UNP Q2TLC1 ? ? 'expression tag' 292 25 1 4D63 GLY A 26 ? UNP Q2TLC1 ? ? 'expression tag' 293 26 1 4D63 GLY A 27 ? UNP Q2TLC1 ? ? 'expression tag' 294 27 1 4D63 GLN A 28 ? UNP Q2TLC1 ? ? 'expression tag' 295 28 1 4D63 GLN A 29 ? UNP Q2TLC1 ? ? 'expression tag' 296 29 1 4D63 MET A 30 ? UNP Q2TLC1 ? ? 'expression tag' 297 30 1 4D63 GLY A 31 ? UNP Q2TLC1 ? ? 'expression tag' 298 31 1 4D63 ARG A 32 ? UNP Q2TLC1 ? ? 'expression tag' 299 32 1 4D63 GLY A 33 ? UNP Q2TLC1 ? ? 'expression tag' 300 33 1 4D63 SER A 34 ? UNP Q2TLC1 ? ? 'expression tag' 301 34 1 4D63 GLU A 35 ? UNP Q2TLC1 ? ? 'expression tag' 302 35 1 4D63 PHE A 36 ? UNP Q2TLC1 ? ? 'expression tag' 303 36 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SIA 'D-saccharide, alpha linking' . 'N-acetyl-alpha-neuraminic acid' ? 'C11 H19 N O9' 309.270 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4D63 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.94 _exptl_crystal.density_percent_sol 37 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '25MM MORPHOLINO-ETHANESULFONIC ACID, 0.5-1.0 M DIAMMONIUM PHOSPHATE, 0.1M SODIUM CITRATE PH 5.5-5.8, 0.2-0.3M SODIUM CHLORIDE' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2013-10-03 _diffrn_detector.details 'TWO CYLINDRICAL VERTICAL FOCUSING PARABOLIC MIRRORS' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'DOUBLE CRYSTAL MONOCHROMATOR, SI (111), SI(311)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9795 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE BM30A' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline BM30A _diffrn_source.pdbx_wavelength 0.9795 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4D63 _reflns.observed_criterion_sigma_I . _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 25.00 _reflns.d_resolution_high 2.20 _reflns.number_obs 7836 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.07 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 18.80 _reflns.B_iso_Wilson_estimate 40.1 _reflns.pdbx_redundancy 9.3 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.20 _reflns_shell.d_res_low 2.32 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.58 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.00 _reflns_shell.pdbx_redundancy 9.6 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4D63 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 7836 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 25.00 _refine.ls_d_res_high 2.20 _refine.ls_percent_reflns_obs 99.87 _refine.ls_R_factor_obs 0.17885 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.17700 _refine.ls_R_factor_R_free 0.21477 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.7 _refine.ls_number_reflns_R_free 383 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.965 _refine.correlation_coeff_Fo_to_Fc_free 0.948 _refine.B_iso_mean 47.659 _refine.aniso_B[1][1] 0.00 _refine.aniso_B[2][2] 0.00 _refine.aniso_B[3][3] 0.00 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES REFINED INDIVIDUALLY' _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct OTHER _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details 'THIN SHELLS' _refine.pdbx_overall_ESU_R 0.242 _refine.pdbx_overall_ESU_R_Free 0.186 _refine.overall_SU_ML 0.153 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 6.245 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1092 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 21 _refine_hist.number_atoms_solvent 60 _refine_hist.number_atoms_total 1173 _refine_hist.d_res_high 2.20 _refine_hist.d_res_low 25.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.012 0.019 ? 1134 'X-RAY DIFFRACTION' ? r_bond_other_d 0.003 0.020 ? 1139 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.643 1.990 ? 1540 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.756 3.000 ? 2612 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.753 5.000 ? 137 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 40.478 24.130 ? 46 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 15.404 15.000 ? 202 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 20.577 15.000 ? 7 'X-RAY DIFFRACTION' ? r_chiral_restr 0.085 0.200 ? 184 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.007 0.021 ? 1253 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 257 'X-RAY DIFFRACTION' ? r_nbd_refined 0.208 0.200 ? 184 'X-RAY DIFFRACTION' ? r_nbd_other 0.180 0.200 ? 1065 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.171 0.200 ? 538 'X-RAY DIFFRACTION' ? r_nbtor_other 0.081 0.200 ? 661 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.165 0.200 ? 24 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other 0.062 0.200 ? 2 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.228 0.200 ? 22 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.173 0.200 ? 65 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.037 0.200 ? 3 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 3.260 4.424 ? 551 'X-RAY DIFFRACTION' ? r_mcbond_other 3.262 4.413 ? 550 'X-RAY DIFFRACTION' ? r_mcangle_it 5.010 6.602 ? 687 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 3.932 5.050 ? 583 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 6.410 7.370 ? 853 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 10 _refine_ls_shell.d_res_high 2.200 _refine_ls_shell.d_res_low 2.318 _refine_ls_shell.number_reflns_R_work 1121 _refine_ls_shell.R_factor_R_work 0.225 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.322 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 56 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 4D63 _struct.title 'Structure of the carboxy-terminal domain of the turkey type 3 siadenovirus fibre, avirulent form complexed with 6-sialyllactose.' _struct.pdbx_descriptor 'FIBER KNOB DOMAIN' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4D63 _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' _struct_keywords.text 'VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id ALA _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 103 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id PHE _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 105 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ALA _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 370 _struct_conf.end_auth_comp_id PHE _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 372 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id SER _struct_mon_prot_cis.label_seq_id 107 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id SER _struct_mon_prot_cis.auth_seq_id 374 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 108 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 375 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 5.90 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 10 ? AB ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel AA 4 5 ? anti-parallel AA 5 6 ? anti-parallel AA 6 7 ? anti-parallel AA 7 8 ? anti-parallel AA 8 9 ? anti-parallel AA 9 10 ? anti-parallel AB 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 ILE A 98 ? ARG A 101 ? ILE A 365 ARG A 368 AA 2 ILE A 171 ? ILE A 176 ? ILE A 438 ILE A 443 AA 3 ILE A 129 ? LEU A 137 ? ILE A 396 LEU A 404 AA 4 SER A 142 ? LYS A 154 ? SER A 409 LYS A 421 AA 5 ASN A 157 ? GLN A 163 ? ASN A 424 GLN A 430 AA 6 THR A 113 ? GLY A 120 ? THR A 380 GLY A 387 AA 7 THR A 53 ? THR A 59 ? THR A 320 THR A 326 AA 8 VAL A 64 ? ARG A 71 ? VAL A 331 ARG A 338 AA 9 LEU A 75 ? PHE A 80 ? LEU A 342 PHE A 347 AA 10 LEU A 181 ? LEU A 185 ? LEU A 448 LEU A 452 AB 1 VAL A 86 ? MET A 87 ? VAL A 353 MET A 354 AB 2 TYR A 93 ? ARG A 94 ? TYR A 360 ARG A 361 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N LEU A 100 ? N LEU A 367 O ILE A 174 ? O ILE A 441 AA 2 3 N LYS A 175 ? N LYS A 442 O GLU A 134 ? O GLU A 401 AA 3 4 N VAL A 135 ? N VAL A 402 O PHE A 143 ? O PHE A 410 AA 4 5 N LYS A 154 ? N LYS A 421 O ASN A 157 ? O ASN A 424 AA 5 6 N ILE A 162 ? N ILE A 429 O TYR A 114 ? O TYR A 381 AA 6 7 N ASN A 119 ? N ASN A 386 O VAL A 58 ? O VAL A 325 AA 7 8 N PHE A 57 ? N PHE A 324 O LEU A 65 ? O LEU A 332 AA 8 9 N VAL A 70 ? N VAL A 337 O ILE A 77 ? O ILE A 344 AA 9 10 N ILE A 78 ? N ILE A 345 O PHE A 182 ? O PHE A 449 AB 1 2 N VAL A 86 ? N VAL A 353 O ARG A 94 ? O ARG A 361 # _database_PDB_matrix.entry_id 4D63 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4D63 _atom_sites.fract_transf_matrix[1][1] 0.010156 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010156 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010156 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 268 ? ? ? A . n A 1 2 GLY 2 269 ? ? ? A . n A 1 3 SER 3 270 ? ? ? A . n A 1 4 SER 4 271 ? ? ? A . n A 1 5 HIS 5 272 ? ? ? A . n A 1 6 HIS 6 273 ? ? ? A . n A 1 7 HIS 7 274 ? ? ? A . n A 1 8 HIS 8 275 ? ? ? A . n A 1 9 HIS 9 276 ? ? ? A . n A 1 10 HIS 10 277 ? ? ? A . n A 1 11 SER 11 278 ? ? ? A . n A 1 12 SER 12 279 ? ? ? A . n A 1 13 GLY 13 280 ? ? ? A . n A 1 14 LEU 14 281 ? ? ? A . n A 1 15 VAL 15 282 ? ? ? A . n A 1 16 PRO 16 283 ? ? ? A . n A 1 17 ARG 17 284 ? ? ? A . n A 1 18 GLY 18 285 ? ? ? A . n A 1 19 SER 19 286 ? ? ? A . n A 1 20 HIS 20 287 ? ? ? A . n A 1 21 MET 21 288 ? ? ? A . n A 1 22 ALA 22 289 ? ? ? A . n A 1 23 SER 23 290 ? ? ? A . n A 1 24 MET 24 291 ? ? ? A . n A 1 25 THR 25 292 ? ? ? A . n A 1 26 GLY 26 293 ? ? ? A . n A 1 27 GLY 27 294 ? ? ? A . n A 1 28 GLN 28 295 ? ? ? A . n A 1 29 GLN 29 296 ? ? ? A . n A 1 30 MET 30 297 ? ? ? A . n A 1 31 GLY 31 298 ? ? ? A . n A 1 32 ARG 32 299 ? ? ? A . n A 1 33 GLY 33 300 ? ? ? A . n A 1 34 SER 34 301 ? ? ? A . n A 1 35 GLU 35 302 ? ? ? A . n A 1 36 PHE 36 303 ? ? ? A . n A 1 37 GLY 37 304 ? ? ? A . n A 1 38 PRO 38 305 ? ? ? A . n A 1 39 PRO 39 306 ? ? ? A . n A 1 40 THR 40 307 ? ? ? A . n A 1 41 THR 41 308 ? ? ? A . n A 1 42 MET 42 309 ? ? ? A . n A 1 43 VAL 43 310 ? ? ? A . n A 1 44 THR 44 311 ? ? ? A . n A 1 45 GLY 45 312 ? ? ? A . n A 1 46 THR 46 313 ? ? ? A . n A 1 47 VAL 47 314 ? ? ? A . n A 1 48 SER 48 315 ? ? ? A . n A 1 49 PRO 49 316 ? ? ? A . n A 1 50 GLY 50 317 317 GLY GLY A . n A 1 51 ARG 51 318 318 ARG ARG A . n A 1 52 ALA 52 319 319 ALA ALA A . n A 1 53 THR 53 320 320 THR THR A . n A 1 54 ASN 54 321 321 ASN ASN A . n A 1 55 GLY 55 322 322 GLY GLY A . n A 1 56 GLN 56 323 323 GLN GLN A . n A 1 57 PHE 57 324 324 PHE PHE A . n A 1 58 VAL 58 325 325 VAL VAL A . n A 1 59 THR 59 326 326 THR THR A . n A 1 60 LYS 60 327 327 LYS LYS A . n A 1 61 THR 61 328 328 THR THR A . n A 1 62 ALA 62 329 329 ALA ALA A . n A 1 63 LYS 63 330 330 LYS LYS A . n A 1 64 VAL 64 331 331 VAL VAL A . n A 1 65 LEU 65 332 332 LEU LEU A . n A 1 66 ARG 66 333 333 ARG ARG A . n A 1 67 TYR 67 334 334 TYR TYR A . n A 1 68 LYS 68 335 335 LYS LYS A . n A 1 69 PHE 69 336 336 PHE PHE A . n A 1 70 VAL 70 337 337 VAL VAL A . n A 1 71 ARG 71 338 338 ARG ARG A . n A 1 72 TRP 72 339 339 TRP TRP A . n A 1 73 ASP 73 340 340 ASP ASP A . n A 1 74 ALA 74 341 341 ALA ALA A . n A 1 75 LEU 75 342 342 LEU LEU A . n A 1 76 LEU 76 343 343 LEU LEU A . n A 1 77 ILE 77 344 344 ILE ILE A . n A 1 78 ILE 78 345 345 ILE ILE A . n A 1 79 GLN 79 346 346 GLN GLN A . n A 1 80 PHE 80 347 347 PHE PHE A . n A 1 81 ILE 81 348 348 ILE ILE A . n A 1 82 ASP 82 349 349 ASP ASP A . n A 1 83 ASN 83 350 350 ASN ASN A . n A 1 84 ILE 84 351 351 ILE ILE A . n A 1 85 GLY 85 352 352 GLY GLY A . n A 1 86 VAL 86 353 353 VAL VAL A . n A 1 87 MET 87 354 354 MET MET A . n A 1 88 GLU 88 355 355 GLU GLU A . n A 1 89 ASN 89 356 356 ASN ASN A . n A 1 90 PRO 90 357 357 PRO PRO A . n A 1 91 THR 91 358 358 THR THR A . n A 1 92 PHE 92 359 359 PHE PHE A . n A 1 93 TYR 93 360 360 TYR TYR A . n A 1 94 ARG 94 361 361 ARG ARG A . n A 1 95 ASN 95 362 362 ASN ASN A . n A 1 96 LYS 96 363 363 LYS LYS A . n A 1 97 SER 97 364 364 SER SER A . n A 1 98 ILE 98 365 365 ILE ILE A . n A 1 99 GLU 99 366 366 GLU GLU A . n A 1 100 LEU 100 367 367 LEU LEU A . n A 1 101 ARG 101 368 368 ARG ARG A . n A 1 102 SER 102 369 369 SER SER A . n A 1 103 ALA 103 370 370 ALA ALA A . n A 1 104 ASP 104 371 371 ASP ASP A . n A 1 105 PHE 105 372 372 PHE PHE A . n A 1 106 LEU 106 373 373 LEU LEU A . n A 1 107 SER 107 374 374 SER SER A . n A 1 108 PRO 108 375 375 PRO PRO A . n A 1 109 MET 109 376 376 MET MET A . n A 1 110 LEU 110 377 377 LEU LEU A . n A 1 111 ASN 111 378 378 ASN ASN A . n A 1 112 ASN 112 379 379 ASN ASN A . n A 1 113 THR 113 380 380 THR THR A . n A 1 114 TYR 114 381 381 TYR TYR A . n A 1 115 ILE 115 382 382 ILE ILE A . n A 1 116 VAL 116 383 383 VAL VAL A . n A 1 117 PRO 117 384 384 PRO PRO A . n A 1 118 LEU 118 385 385 LEU LEU A . n A 1 119 ASN 119 386 386 ASN ASN A . n A 1 120 GLY 120 387 387 GLY GLY A . n A 1 121 GLY 121 388 388 GLY GLY A . n A 1 122 VAL 122 389 389 VAL VAL A . n A 1 123 ARG 123 390 390 ARG ARG A . n A 1 124 VAL 124 391 391 VAL VAL A . n A 1 125 GLU 125 392 392 GLU GLU A . n A 1 126 SER 126 393 393 SER SER A . n A 1 127 PRO 127 394 394 PRO PRO A . n A 1 128 THR 128 395 395 THR THR A . n A 1 129 ILE 129 396 396 ILE ILE A . n A 1 130 PRO 130 397 397 PRO PRO A . n A 1 131 VAL 131 398 398 VAL VAL A . n A 1 132 GLN 132 399 399 GLN GLN A . n A 1 133 LEU 133 400 400 LEU LEU A . n A 1 134 GLU 134 401 401 GLU GLU A . n A 1 135 VAL 135 402 402 VAL VAL A . n A 1 136 ILE 136 403 403 ILE ILE A . n A 1 137 LEU 137 404 404 LEU LEU A . n A 1 138 GLU 138 405 405 GLU GLU A . n A 1 139 ASN 139 406 406 ASN ASN A . n A 1 140 ASN 140 407 407 ASN ASN A . n A 1 141 SER 141 408 408 SER SER A . n A 1 142 SER 142 409 409 SER SER A . n A 1 143 PHE 143 410 410 PHE PHE A . n A 1 144 ILE 144 411 411 ILE ILE A . n A 1 145 GLN 145 412 412 GLN GLN A . n A 1 146 VAL 146 413 413 VAL VAL A . n A 1 147 GLY 147 414 414 GLY GLY A . n A 1 148 PHE 148 415 415 PHE PHE A . n A 1 149 VAL 149 416 416 VAL VAL A . n A 1 150 ARG 150 417 417 ARG ARG A . n A 1 151 LEU 151 418 418 LEU LEU A . n A 1 152 THR 152 419 419 THR THR A . n A 1 153 VAL 153 420 420 VAL VAL A . n A 1 154 LYS 154 421 421 LYS LYS A . n A 1 155 ASN 155 422 422 ASN ASN A . n A 1 156 GLY 156 423 423 GLY GLY A . n A 1 157 ASN 157 424 424 ASN ASN A . n A 1 158 PRO 158 425 425 PRO PRO A . n A 1 159 HIS 159 426 426 HIS HIS A . n A 1 160 MET 160 427 427 MET MET A . n A 1 161 ILE 161 428 428 ILE ILE A . n A 1 162 ILE 162 429 429 ILE ILE A . n A 1 163 GLN 163 430 430 GLN GLN A . n A 1 164 CYS 164 431 431 CYS CYS A . n A 1 165 ASN 165 432 432 ASN ASN A . n A 1 166 PRO 166 433 433 PRO PRO A . n A 1 167 VAL 167 434 434 VAL VAL A . n A 1 168 PRO 168 435 435 PRO PRO A . n A 1 169 GLY 169 436 436 GLY GLY A . n A 1 170 ASN 170 437 437 ASN ASN A . n A 1 171 ILE 171 438 438 ILE ILE A . n A 1 172 LYS 172 439 439 LYS LYS A . n A 1 173 MET 173 440 440 MET MET A . n A 1 174 ILE 174 441 441 ILE ILE A . n A 1 175 LYS 175 442 442 LYS LYS A . n A 1 176 ILE 176 443 443 ILE ILE A . n A 1 177 LYS 177 444 444 LYS LYS A . n A 1 178 SER 178 445 445 SER SER A . n A 1 179 VAL 179 446 446 VAL VAL A . n A 1 180 MET 180 447 447 MET MET A . n A 1 181 LEU 181 448 448 LEU LEU A . n A 1 182 PHE 182 449 449 PHE PHE A . n A 1 183 THR 183 450 450 THR THR A . n A 1 184 CYS 184 451 451 CYS CYS A . n A 1 185 LEU 185 452 452 LEU LEU A . n A 1 186 ILE 186 453 453 ILE ILE A . n A 1 187 GLY 187 454 454 GLY GLY A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SIA 1 1455 1455 SIA SIA A . C 3 HOH 1 2001 2001 HOH HOH A . C 3 HOH 2 2002 2002 HOH HOH A . C 3 HOH 3 2003 2003 HOH HOH A . C 3 HOH 4 2004 2004 HOH HOH A . C 3 HOH 5 2005 2005 HOH HOH A . C 3 HOH 6 2006 2006 HOH HOH A . C 3 HOH 7 2007 2007 HOH HOH A . C 3 HOH 8 2008 2008 HOH HOH A . C 3 HOH 9 2009 2009 HOH HOH A . C 3 HOH 10 2010 2010 HOH HOH A . C 3 HOH 11 2011 2011 HOH HOH A . C 3 HOH 12 2012 2012 HOH HOH A . C 3 HOH 13 2013 2013 HOH HOH A . C 3 HOH 14 2014 2014 HOH HOH A . C 3 HOH 15 2015 2015 HOH HOH A . C 3 HOH 16 2016 2016 HOH HOH A . C 3 HOH 17 2017 2017 HOH HOH A . C 3 HOH 18 2018 2018 HOH HOH A . C 3 HOH 19 2019 2019 HOH HOH A . C 3 HOH 20 2020 2020 HOH HOH A . C 3 HOH 21 2021 2021 HOH HOH A . C 3 HOH 22 2022 2022 HOH HOH A . C 3 HOH 23 2023 2023 HOH HOH A . C 3 HOH 24 2024 2024 HOH HOH A . C 3 HOH 25 2025 2025 HOH HOH A . C 3 HOH 26 2026 2026 HOH HOH A . C 3 HOH 27 2027 2027 HOH HOH A . C 3 HOH 28 2028 2028 HOH HOH A . C 3 HOH 29 2029 2029 HOH HOH A . C 3 HOH 30 2030 2030 HOH HOH A . C 3 HOH 31 2031 2031 HOH HOH A . C 3 HOH 32 2032 2032 HOH HOH A . C 3 HOH 33 2033 2033 HOH HOH A . C 3 HOH 34 2034 2034 HOH HOH A . C 3 HOH 35 2035 2035 HOH HOH A . C 3 HOH 36 2036 2036 HOH HOH A . C 3 HOH 37 2037 2037 HOH HOH A . C 3 HOH 38 2038 2038 HOH HOH A . C 3 HOH 39 2039 2039 HOH HOH A . C 3 HOH 40 2040 2040 HOH HOH A . C 3 HOH 41 2041 2041 HOH HOH A . C 3 HOH 42 2042 2042 HOH HOH A . C 3 HOH 43 2043 2043 HOH HOH A . C 3 HOH 44 2044 2044 HOH HOH A . C 3 HOH 45 2045 2045 HOH HOH A . C 3 HOH 46 2046 2046 HOH HOH A . C 3 HOH 47 2047 2047 HOH HOH A . C 3 HOH 48 2048 2048 HOH HOH A . C 3 HOH 49 2049 2049 HOH HOH A . C 3 HOH 50 2050 2050 HOH HOH A . C 3 HOH 51 2051 2051 HOH HOH A . C 3 HOH 52 2052 2052 HOH HOH A . C 3 HOH 53 2053 2053 HOH HOH A . C 3 HOH 54 2054 2054 HOH HOH A . C 3 HOH 55 2055 2055 HOH HOH A . C 3 HOH 56 2056 2056 HOH HOH A . C 3 HOH 57 2057 2057 HOH HOH A . C 3 HOH 58 2058 2058 HOH HOH A . C 3 HOH 59 2059 2059 HOH HOH A . C 3 HOH 60 2060 2060 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 8510 ? 1 MORE -55.7 ? 1 'SSA (A^2)' 16650 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 9_555 y,z,x 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 3 'crystal symmetry operation' 5_555 z,x,y 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 2059 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id C _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-10-14 2 'Structure model' 1 1 2018-01-17 3 'Structure model' 1 2 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 3 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Derived calculations' 4 3 'Structure model' Other 5 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' chem_comp 4 3 'Structure model' entity 5 3 'Structure model' pdbx_chem_comp_identifier 6 3 'Structure model' pdbx_database_status 7 3 'Structure model' pdbx_entity_nonpoly 8 3 'Structure model' struct_site 9 3 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_abbrev' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation.pdbx_database_id_DOI' 5 2 'Structure model' '_citation_author.name' 6 3 'Structure model' '_chem_comp.name' 7 3 'Structure model' '_chem_comp.type' 8 3 'Structure model' '_entity.pdbx_description' 9 3 'Structure model' '_pdbx_database_status.status_code_sf' 10 3 'Structure model' '_pdbx_entity_nonpoly.name' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.8.0073 ? 1 MOSFLM 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TRP A 339 ? ? -99.24 -159.79 2 1 ASP A 340 ? ? -42.89 -90.83 3 1 ASN A 407 ? ? 64.17 -1.17 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 268 ? A MET 1 2 1 Y 1 A GLY 269 ? A GLY 2 3 1 Y 1 A SER 270 ? A SER 3 4 1 Y 1 A SER 271 ? A SER 4 5 1 Y 1 A HIS 272 ? A HIS 5 6 1 Y 1 A HIS 273 ? A HIS 6 7 1 Y 1 A HIS 274 ? A HIS 7 8 1 Y 1 A HIS 275 ? A HIS 8 9 1 Y 1 A HIS 276 ? A HIS 9 10 1 Y 1 A HIS 277 ? A HIS 10 11 1 Y 1 A SER 278 ? A SER 11 12 1 Y 1 A SER 279 ? A SER 12 13 1 Y 1 A GLY 280 ? A GLY 13 14 1 Y 1 A LEU 281 ? A LEU 14 15 1 Y 1 A VAL 282 ? A VAL 15 16 1 Y 1 A PRO 283 ? A PRO 16 17 1 Y 1 A ARG 284 ? A ARG 17 18 1 Y 1 A GLY 285 ? A GLY 18 19 1 Y 1 A SER 286 ? A SER 19 20 1 Y 1 A HIS 287 ? A HIS 20 21 1 Y 1 A MET 288 ? A MET 21 22 1 Y 1 A ALA 289 ? A ALA 22 23 1 Y 1 A SER 290 ? A SER 23 24 1 Y 1 A MET 291 ? A MET 24 25 1 Y 1 A THR 292 ? A THR 25 26 1 Y 1 A GLY 293 ? A GLY 26 27 1 Y 1 A GLY 294 ? A GLY 27 28 1 Y 1 A GLN 295 ? A GLN 28 29 1 Y 1 A GLN 296 ? A GLN 29 30 1 Y 1 A MET 297 ? A MET 30 31 1 Y 1 A GLY 298 ? A GLY 31 32 1 Y 1 A ARG 299 ? A ARG 32 33 1 Y 1 A GLY 300 ? A GLY 33 34 1 Y 1 A SER 301 ? A SER 34 35 1 Y 1 A GLU 302 ? A GLU 35 36 1 Y 1 A PHE 303 ? A PHE 36 37 1 Y 1 A GLY 304 ? A GLY 37 38 1 Y 1 A PRO 305 ? A PRO 38 39 1 Y 1 A PRO 306 ? A PRO 39 40 1 Y 1 A THR 307 ? A THR 40 41 1 Y 1 A THR 308 ? A THR 41 42 1 Y 1 A MET 309 ? A MET 42 43 1 Y 1 A VAL 310 ? A VAL 43 44 1 Y 1 A THR 311 ? A THR 44 45 1 Y 1 A GLY 312 ? A GLY 45 46 1 Y 1 A THR 313 ? A THR 46 47 1 Y 1 A VAL 314 ? A VAL 47 48 1 Y 1 A SER 315 ? A SER 48 49 1 Y 1 A PRO 316 ? A PRO 49 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier SIA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DNeup5Aca SIA 'COMMON NAME' GMML 1.0 'N-acetyl-a-D-neuraminic acid' SIA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Neup5Ac SIA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Neu5Ac # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'N-acetyl-alpha-neuraminic acid' SIA 3 water HOH #