data_4D77 # _entry.id 4D77 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4D77 PDBE EBI-62355 WWPDB D_1290062355 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4D7C _pdbx_database_related.content_type unspecified _pdbx_database_related.details 'MONOCLINIC CRYSTAL FORM OF THE EXTRACELLULAR OLFACTOMEDIN DOMAIN FROM GLIOMEDIN' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4D77 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2014-11-20 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Han, H.' 1 'Kursula, P.' 2 # _citation.id primary _citation.title 'The Olfactomedin Domain from Gliomedin is a Beta-Propeller with Unique Structural Properties.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 290 _citation.page_first 3612 _citation.page_last ? _citation.year 2015 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25525261 _citation.pdbx_database_id_DOI 10.1074/JBC.M114.627547 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Han, H.' 1 primary 'Kursula, P.' 2 # _cell.entry_id 4D77 _cell.length_a 45.840 _cell.length_b 62.480 _cell.length_c 88.290 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4D77 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man GLIOMEDIN 32435.500 1 ? ? 'OLFACTOMEDIN DOMAIN, UNP RESIDUES 260-543' ? 2 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 3 non-polymer syn '(4S)-2-METHYL-2,4-PENTANEDIOL' 118.174 3 ? ? ? ? 4 water nat water 18.015 170 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GQPNSFTNQCPGETCVIPNDDTLVGRADEKVNERHSPQTEPMITSIGNPAQVLKVKETFGTWLRESANRSDDRIWVTEHF SGIMVKEFEDLPALLNSSFTLLHLPHYFHGCGHAVYNNSLYYHKGGSNTIVRFEFGKETPQTLKLEDALYFDRKYLFANS KTYFNIAVDEKGLWIIYASSVDGSSILVAQLDERTFSVLRHINTTYPKSKAGNAFIAQGILYVTDTKDTRVTFAFDLLRG KQINANFGLRMSQSVLAMLSYNMRDQHLYSWEDGHLMLYPVHFSS ; _entity_poly.pdbx_seq_one_letter_code_can ;GQPNSFTNQCPGETCVIPNDDTLVGRADEKVNERHSPQTEPMITSIGNPAQVLKVKETFGTWLRESANRSDDRIWVTEHF SGIMVKEFEDLPALLNSSFTLLHLPHYFHGCGHAVYNNSLYYHKGGSNTIVRFEFGKETPQTLKLEDALYFDRKYLFANS KTYFNIAVDEKGLWIIYASSVDGSSILVAQLDERTFSVLRHINTTYPKSKAGNAFIAQGILYVTDTKDTRVTFAFDLLRG KQINANFGLRMSQSVLAMLSYNMRDQHLYSWEDGHLMLYPVHFSS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLN n 1 3 PRO n 1 4 ASN n 1 5 SER n 1 6 PHE n 1 7 THR n 1 8 ASN n 1 9 GLN n 1 10 CYS n 1 11 PRO n 1 12 GLY n 1 13 GLU n 1 14 THR n 1 15 CYS n 1 16 VAL n 1 17 ILE n 1 18 PRO n 1 19 ASN n 1 20 ASP n 1 21 ASP n 1 22 THR n 1 23 LEU n 1 24 VAL n 1 25 GLY n 1 26 ARG n 1 27 ALA n 1 28 ASP n 1 29 GLU n 1 30 LYS n 1 31 VAL n 1 32 ASN n 1 33 GLU n 1 34 ARG n 1 35 HIS n 1 36 SER n 1 37 PRO n 1 38 GLN n 1 39 THR n 1 40 GLU n 1 41 PRO n 1 42 MET n 1 43 ILE n 1 44 THR n 1 45 SER n 1 46 ILE n 1 47 GLY n 1 48 ASN n 1 49 PRO n 1 50 ALA n 1 51 GLN n 1 52 VAL n 1 53 LEU n 1 54 LYS n 1 55 VAL n 1 56 LYS n 1 57 GLU n 1 58 THR n 1 59 PHE n 1 60 GLY n 1 61 THR n 1 62 TRP n 1 63 LEU n 1 64 ARG n 1 65 GLU n 1 66 SER n 1 67 ALA n 1 68 ASN n 1 69 ARG n 1 70 SER n 1 71 ASP n 1 72 ASP n 1 73 ARG n 1 74 ILE n 1 75 TRP n 1 76 VAL n 1 77 THR n 1 78 GLU n 1 79 HIS n 1 80 PHE n 1 81 SER n 1 82 GLY n 1 83 ILE n 1 84 MET n 1 85 VAL n 1 86 LYS n 1 87 GLU n 1 88 PHE n 1 89 GLU n 1 90 ASP n 1 91 LEU n 1 92 PRO n 1 93 ALA n 1 94 LEU n 1 95 LEU n 1 96 ASN n 1 97 SER n 1 98 SER n 1 99 PHE n 1 100 THR n 1 101 LEU n 1 102 LEU n 1 103 HIS n 1 104 LEU n 1 105 PRO n 1 106 HIS n 1 107 TYR n 1 108 PHE n 1 109 HIS n 1 110 GLY n 1 111 CYS n 1 112 GLY n 1 113 HIS n 1 114 ALA n 1 115 VAL n 1 116 TYR n 1 117 ASN n 1 118 ASN n 1 119 SER n 1 120 LEU n 1 121 TYR n 1 122 TYR n 1 123 HIS n 1 124 LYS n 1 125 GLY n 1 126 GLY n 1 127 SER n 1 128 ASN n 1 129 THR n 1 130 ILE n 1 131 VAL n 1 132 ARG n 1 133 PHE n 1 134 GLU n 1 135 PHE n 1 136 GLY n 1 137 LYS n 1 138 GLU n 1 139 THR n 1 140 PRO n 1 141 GLN n 1 142 THR n 1 143 LEU n 1 144 LYS n 1 145 LEU n 1 146 GLU n 1 147 ASP n 1 148 ALA n 1 149 LEU n 1 150 TYR n 1 151 PHE n 1 152 ASP n 1 153 ARG n 1 154 LYS n 1 155 TYR n 1 156 LEU n 1 157 PHE n 1 158 ALA n 1 159 ASN n 1 160 SER n 1 161 LYS n 1 162 THR n 1 163 TYR n 1 164 PHE n 1 165 ASN n 1 166 ILE n 1 167 ALA n 1 168 VAL n 1 169 ASP n 1 170 GLU n 1 171 LYS n 1 172 GLY n 1 173 LEU n 1 174 TRP n 1 175 ILE n 1 176 ILE n 1 177 TYR n 1 178 ALA n 1 179 SER n 1 180 SER n 1 181 VAL n 1 182 ASP n 1 183 GLY n 1 184 SER n 1 185 SER n 1 186 ILE n 1 187 LEU n 1 188 VAL n 1 189 ALA n 1 190 GLN n 1 191 LEU n 1 192 ASP n 1 193 GLU n 1 194 ARG n 1 195 THR n 1 196 PHE n 1 197 SER n 1 198 VAL n 1 199 LEU n 1 200 ARG n 1 201 HIS n 1 202 ILE n 1 203 ASN n 1 204 THR n 1 205 THR n 1 206 TYR n 1 207 PRO n 1 208 LYS n 1 209 SER n 1 210 LYS n 1 211 ALA n 1 212 GLY n 1 213 ASN n 1 214 ALA n 1 215 PHE n 1 216 ILE n 1 217 ALA n 1 218 GLN n 1 219 GLY n 1 220 ILE n 1 221 LEU n 1 222 TYR n 1 223 VAL n 1 224 THR n 1 225 ASP n 1 226 THR n 1 227 LYS n 1 228 ASP n 1 229 THR n 1 230 ARG n 1 231 VAL n 1 232 THR n 1 233 PHE n 1 234 ALA n 1 235 PHE n 1 236 ASP n 1 237 LEU n 1 238 LEU n 1 239 ARG n 1 240 GLY n 1 241 LYS n 1 242 GLN n 1 243 ILE n 1 244 ASN n 1 245 ALA n 1 246 ASN n 1 247 PHE n 1 248 GLY n 1 249 LEU n 1 250 ARG n 1 251 MET n 1 252 SER n 1 253 GLN n 1 254 SER n 1 255 VAL n 1 256 LEU n 1 257 ALA n 1 258 MET n 1 259 LEU n 1 260 SER n 1 261 TYR n 1 262 ASN n 1 263 MET n 1 264 ARG n 1 265 ASP n 1 266 GLN n 1 267 HIS n 1 268 LEU n 1 269 TYR n 1 270 SER n 1 271 TRP n 1 272 GLU n 1 273 ASP n 1 274 GLY n 1 275 HIS n 1 276 LEU n 1 277 MET n 1 278 LEU n 1 279 TYR n 1 280 PRO n 1 281 VAL n 1 282 HIS n 1 283 PHE n 1 284 SER n 1 285 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'NORWAY RAT' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'RATTUS NORVEGICUS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10116 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name 'FALL ARMYWORM' _entity_src_gen.pdbx_host_org_scientific_name 'SPODOPTERA FRUGIPERDA' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 7108 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type BACULOVIRUS _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code GLDN_RAT _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession Q80WL1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4D77 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 285 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q80WL1 _struct_ref_seq.db_align_beg 260 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 543 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 260 _struct_ref_seq.pdbx_auth_seq_align_end 543 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 4D77 _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q80WL1 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 259 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MPD non-polymer . '(4S)-2-METHYL-2,4-PENTANEDIOL' ? 'C6 H14 O2' 118.174 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4D77 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.95 _exptl_crystal.density_percent_sol 40 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.1 M CHES (PH 9.5) CONTAINING 20% PEG8000' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.954 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID29' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID29 _diffrn_source.pdbx_wavelength 0.954 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4D77 _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.00 _reflns.d_resolution_high 1.48 _reflns.number_obs 42999 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.05 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 18.00 _reflns.B_iso_Wilson_estimate 23.56 _reflns.pdbx_redundancy 6.5 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.48 _reflns_shell.d_res_low 1.52 _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.00 _reflns_shell.pdbx_redundancy 6.3 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4D77 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 42933 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.36 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 40.683 _refine.ls_d_res_high 1.481 _refine.ls_percent_reflns_obs 99.90 _refine.ls_R_factor_obs 0.1386 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1373 _refine.ls_R_factor_R_free 0.1628 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_number_reflns_R_free 2087 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.21 _refine.pdbx_overall_phase_error 19.26 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1985 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 25 _refine_hist.number_atoms_solvent 170 _refine_hist.number_atoms_total 2180 _refine_hist.d_res_high 1.481 _refine_hist.d_res_low 40.683 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.007 ? ? 2099 'X-RAY DIFFRACTION' ? f_angle_d 1.158 ? ? 2851 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 13.095 ? ? 751 'X-RAY DIFFRACTION' ? f_chiral_restr 0.075 ? ? 307 'X-RAY DIFFRACTION' ? f_plane_restr 0.006 ? ? 360 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 1.4805 1.5149 2632 0.3334 100.00 0.3914 . . 152 . . 'X-RAY DIFFRACTION' . 1.5149 1.5528 2680 0.2885 100.00 0.3381 . . 153 . . 'X-RAY DIFFRACTION' . 1.5528 1.5948 2681 0.2315 100.00 0.2963 . . 140 . . 'X-RAY DIFFRACTION' . 1.5948 1.6418 2697 0.2002 100.00 0.2651 . . 131 . . 'X-RAY DIFFRACTION' . 1.6418 1.6947 2698 0.1762 100.00 0.2131 . . 122 . . 'X-RAY DIFFRACTION' . 1.6947 1.7553 2700 0.1600 100.00 0.2266 . . 142 . . 'X-RAY DIFFRACTION' . 1.7553 1.8256 2682 0.1441 100.00 0.1943 . . 139 . . 'X-RAY DIFFRACTION' . 1.8256 1.9087 2718 0.1186 100.00 0.1641 . . 128 . . 'X-RAY DIFFRACTION' . 1.9087 2.0093 2738 0.1058 100.00 0.1579 . . 118 . . 'X-RAY DIFFRACTION' . 2.0093 2.1352 2706 0.1020 100.00 0.1288 . . 141 . . 'X-RAY DIFFRACTION' . 2.1352 2.3000 2740 0.1040 100.00 0.1333 . . 138 . . 'X-RAY DIFFRACTION' . 2.3000 2.5315 2715 0.1167 100.00 0.1463 . . 153 . . 'X-RAY DIFFRACTION' . 2.5315 2.8977 2758 0.1272 100.00 0.1521 . . 137 . . 'X-RAY DIFFRACTION' . 2.8977 3.6504 2783 0.1339 100.00 0.1456 . . 142 . . 'X-RAY DIFFRACTION' . 3.6504 40.6987 2918 0.1433 100.00 0.1568 . . 151 . . # _struct.entry_id 4D77 _struct.title 'High-resolution structure of the extracellular olfactomedin domain from gliomedin' _struct.pdbx_descriptor GLIOMEDIN _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4D77 _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' _struct_keywords.text 'MYELIN, BETA-PROPELLER, SIGNALING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 90 ? ASN A 96 ? ASP A 348 ASN A 354 1 ? 7 HELX_P HELX_P2 2 ALA A 158 ? LYS A 161 ? ALA A 416 LYS A 419 5 ? 4 HELX_P HELX_P3 3 SER A 209 ? ALA A 211 ? SER A 467 ALA A 469 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? B NA . NA ? ? ? 1_555 A LEU 259 O ? ? A NA 1543 A LEU 517 1_555 ? ? ? ? ? ? ? 2.325 ? metalc2 metalc ? ? B NA . NA ? ? ? 1_555 F HOH . O ? ? A NA 1543 A HOH 2063 1_555 ? ? ? ? ? ? ? 2.437 ? metalc3 metalc ? ? B NA . NA ? ? ? 1_555 A ALA 214 O ? ? A NA 1543 A ALA 472 1_555 ? ? ? ? ? ? ? 2.343 ? metalc4 metalc ? ? B NA . NA ? ? ? 1_555 A ASN 165 OD1 ? ? A NA 1543 A ASN 423 1_555 ? ? ? ? ? ? ? 2.274 ? metalc5 metalc ? ? B NA . NA ? ? ? 1_555 A ASN 213 OD1 ? ? A NA 1543 A ASN 471 1_555 ? ? ? ? ? ? ? 2.327 ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 2 ? AB ? 2 ? AC ? 4 ? AD ? 4 ? AE ? 7 ? AF ? 4 ? AG ? 4 ? AH ? 4 ? AI ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AB 1 2 ? anti-parallel AC 1 2 ? anti-parallel AC 2 3 ? anti-parallel AC 3 4 ? anti-parallel AD 1 2 ? anti-parallel AD 2 3 ? anti-parallel AD 3 4 ? anti-parallel AE 1 2 ? anti-parallel AE 2 3 ? anti-parallel AE 3 4 ? anti-parallel AE 4 5 ? anti-parallel AE 5 6 ? anti-parallel AE 6 7 ? anti-parallel AF 1 2 ? anti-parallel AF 2 3 ? anti-parallel AF 3 4 ? anti-parallel AG 1 2 ? anti-parallel AG 2 3 ? anti-parallel AG 3 4 ? parallel AH 1 2 ? anti-parallel AH 2 3 ? anti-parallel AH 3 4 ? anti-parallel AI 1 2 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 MET A 42 ? ILE A 46 ? MET A 300 ILE A 304 AA 2 HIS A 275 ? SER A 284 ? HIS A 533 SER A 542 AB 1 ALA A 50 ? LYS A 54 ? ALA A 308 LYS A 312 AB 2 HIS A 275 ? SER A 284 ? HIS A 533 SER A 542 AC 1 LEU A 256 ? ASN A 262 ? LEU A 514 ASN A 520 AC 2 HIS A 267 ? GLU A 272 ? HIS A 525 GLU A 530 AC 3 HIS A 275 ? SER A 284 ? HIS A 533 SER A 542 AC 4 ALA A 50 ? LYS A 54 ? ALA A 308 LYS A 312 AD 1 LEU A 256 ? ASN A 262 ? LEU A 514 ASN A 520 AD 2 HIS A 267 ? GLU A 272 ? HIS A 525 GLU A 530 AD 3 HIS A 275 ? SER A 284 ? HIS A 533 SER A 542 AD 4 MET A 42 ? ILE A 46 ? MET A 300 ILE A 304 AE 1 GLY A 60 ? ARG A 64 ? GLY A 318 ARG A 322 AE 2 ILE A 74 ? GLU A 78 ? ILE A 332 GLU A 336 AE 3 SER A 81 ? PHE A 88 ? SER A 339 PHE A 346 AE 4 THR A 100 ? VAL A 115 ? THR A 358 VAL A 373 AE 5 SER A 119 ? LYS A 124 ? SER A 377 LYS A 382 AE 6 THR A 129 ? GLU A 134 ? THR A 387 GLU A 392 AE 7 THR A 139 ? LYS A 144 ? THR A 397 LYS A 402 AF 1 ASN A 165 ? VAL A 168 ? ASN A 423 VAL A 426 AF 2 LEU A 173 ? ALA A 178 ? LEU A 431 ALA A 436 AF 3 SER A 185 ? ASP A 192 ? SER A 443 ASP A 450 AF 4 SER A 197 ? PRO A 207 ? SER A 455 PRO A 465 AG 1 ALA A 214 ? ALA A 217 ? ALA A 472 ALA A 475 AG 2 ILE A 220 ? THR A 224 ? ILE A 478 THR A 482 AG 3 ARG A 230 ? ASP A 236 ? ARG A 488 ASP A 494 AG 4 LYS A 241 ? ILE A 243 ? LYS A 499 ILE A 501 AH 1 ALA A 214 ? ALA A 217 ? ALA A 472 ALA A 475 AH 2 ILE A 220 ? THR A 224 ? ILE A 478 THR A 482 AH 3 ARG A 230 ? ASP A 236 ? ARG A 488 ASP A 494 AH 4 PHE A 247 ? GLY A 248 ? PHE A 505 GLY A 506 AI 1 LYS A 241 ? ILE A 243 ? LYS A 499 ILE A 501 AI 2 ARG A 230 ? ASP A 236 ? ARG A 488 ASP A 494 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N THR A 44 ? N THR A 302 O HIS A 282 ? O HIS A 540 AB 1 2 N VAL A 52 ? N VAL A 310 O LEU A 276 ? O LEU A 534 AC 1 2 N ASN A 262 ? N ASN A 520 O HIS A 267 ? O HIS A 525 AC 2 3 N GLU A 272 ? N GLU A 530 O HIS A 275 ? O HIS A 533 AC 3 4 N LEU A 278 ? N LEU A 536 O ALA A 50 ? O ALA A 308 AD 1 2 N ASN A 262 ? N ASN A 520 O HIS A 267 ? O HIS A 525 AD 2 3 N GLU A 272 ? N GLU A 530 O HIS A 275 ? O HIS A 533 AD 3 4 N SER A 284 ? N SER A 542 O MET A 42 ? O MET A 300 AE 1 2 N LEU A 63 ? N LEU A 321 O TRP A 75 ? O TRP A 333 AE 2 3 N VAL A 76 ? N VAL A 334 O LYS A 86 ? O LYS A 344 AE 3 4 N GLU A 87 ? N GLU A 345 O THR A 100 ? O THR A 358 AE 4 5 N ALA A 114 ? N ALA A 372 O TYR A 121 ? O TYR A 379 AE 5 6 N LYS A 124 ? N LYS A 382 O THR A 129 ? O THR A 387 AE 6 7 N GLU A 134 ? N GLU A 392 O THR A 139 ? O THR A 397 AF 1 2 N ALA A 167 ? N ALA A 425 O TRP A 174 ? O TRP A 432 AF 2 3 N TYR A 177 ? N TYR A 435 O LEU A 187 ? O LEU A 445 AF 3 4 N ASP A 192 ? N ASP A 450 O SER A 197 ? O SER A 455 AG 1 2 N ALA A 217 ? N ALA A 475 O ILE A 220 ? O ILE A 478 AG 2 3 O VAL A 223 ? O VAL A 481 N THR A 232 ? N THR A 490 AG 3 4 N ASP A 236 ? N ASP A 494 O LYS A 241 ? O LYS A 499 AH 1 2 N ALA A 217 ? N ALA A 475 O ILE A 220 ? O ILE A 478 AH 2 3 O VAL A 223 ? O VAL A 481 N THR A 232 ? N THR A 490 AH 3 4 N VAL A 231 ? N VAL A 489 O PHE A 247 ? O PHE A 505 AI 1 2 N ILE A 243 ? N ILE A 501 O ALA A 234 ? O ALA A 492 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE NA A 1543' AC2 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE MPD A 1544' AC3 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE MPD A 1545' AC4 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE MPD A 1546' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ASN A 165 ? ASN A 423 . ? 1_555 ? 2 AC1 5 ASN A 213 ? ASN A 471 . ? 1_555 ? 3 AC1 5 ALA A 214 ? ALA A 472 . ? 1_555 ? 4 AC1 5 LEU A 259 ? LEU A 517 . ? 1_555 ? 5 AC1 5 HOH F . ? HOH A 2063 . ? 1_555 ? 6 AC2 3 SER A 209 ? SER A 467 . ? 3_544 ? 7 AC2 3 HIS A 267 ? HIS A 525 . ? 1_555 ? 8 AC2 3 HOH F . ? HOH A 2010 . ? 1_555 ? 9 AC3 5 ARG A 64 ? ARG A 322 . ? 1_555 ? 10 AC3 5 LEU A 91 ? LEU A 349 . ? 1_555 ? 11 AC3 5 TYR A 107 ? TYR A 365 . ? 3_444 ? 12 AC3 5 ASP A 265 ? ASP A 523 . ? 1_555 ? 13 AC3 5 TYR A 269 ? TYR A 527 . ? 1_555 ? 14 AC4 3 VAL A 168 ? VAL A 426 . ? 1_555 ? 15 AC4 3 ASP A 169 ? ASP A 427 . ? 1_555 ? 16 AC4 3 GLY A 172 ? GLY A 430 . ? 1_555 ? # _database_PDB_matrix.entry_id 4D77 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4D77 _atom_sites.fract_transf_matrix[1][1] 0.021815 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016005 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011326 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N NA O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 259 ? ? ? A . n A 1 2 GLN 2 260 ? ? ? A . n A 1 3 PRO 3 261 ? ? ? A . n A 1 4 ASN 4 262 ? ? ? A . n A 1 5 SER 5 263 ? ? ? A . n A 1 6 PHE 6 264 ? ? ? A . n A 1 7 THR 7 265 ? ? ? A . n A 1 8 ASN 8 266 ? ? ? A . n A 1 9 GLN 9 267 ? ? ? A . n A 1 10 CYS 10 268 ? ? ? A . n A 1 11 PRO 11 269 ? ? ? A . n A 1 12 GLY 12 270 ? ? ? A . n A 1 13 GLU 13 271 ? ? ? A . n A 1 14 THR 14 272 ? ? ? A . n A 1 15 CYS 15 273 ? ? ? A . n A 1 16 VAL 16 274 ? ? ? A . n A 1 17 ILE 17 275 ? ? ? A . n A 1 18 PRO 18 276 ? ? ? A . n A 1 19 ASN 19 277 ? ? ? A . n A 1 20 ASP 20 278 ? ? ? A . n A 1 21 ASP 21 279 ? ? ? A . n A 1 22 THR 22 280 ? ? ? A . n A 1 23 LEU 23 281 ? ? ? A . n A 1 24 VAL 24 282 ? ? ? A . n A 1 25 GLY 25 283 ? ? ? A . n A 1 26 ARG 26 284 ? ? ? A . n A 1 27 ALA 27 285 ? ? ? A . n A 1 28 ASP 28 286 ? ? ? A . n A 1 29 GLU 29 287 ? ? ? A . n A 1 30 LYS 30 288 ? ? ? A . n A 1 31 VAL 31 289 ? ? ? A . n A 1 32 ASN 32 290 ? ? ? A . n A 1 33 GLU 33 291 ? ? ? A . n A 1 34 ARG 34 292 ? ? ? A . n A 1 35 HIS 35 293 ? ? ? A . n A 1 36 SER 36 294 ? ? ? A . n A 1 37 PRO 37 295 ? ? ? A . n A 1 38 GLN 38 296 ? ? ? A . n A 1 39 THR 39 297 ? ? ? A . n A 1 40 GLU 40 298 298 GLU GLU A . n A 1 41 PRO 41 299 299 PRO PRO A . n A 1 42 MET 42 300 300 MET MET A . n A 1 43 ILE 43 301 301 ILE ILE A . n A 1 44 THR 44 302 302 THR THR A . n A 1 45 SER 45 303 303 SER SER A . n A 1 46 ILE 46 304 304 ILE ILE A . n A 1 47 GLY 47 305 305 GLY GLY A . n A 1 48 ASN 48 306 306 ASN ASN A . n A 1 49 PRO 49 307 307 PRO PRO A . n A 1 50 ALA 50 308 308 ALA ALA A . n A 1 51 GLN 51 309 309 GLN GLN A . n A 1 52 VAL 52 310 310 VAL VAL A . n A 1 53 LEU 53 311 311 LEU LEU A . n A 1 54 LYS 54 312 312 LYS LYS A . n A 1 55 VAL 55 313 313 VAL VAL A . n A 1 56 LYS 56 314 314 LYS LYS A . n A 1 57 GLU 57 315 315 GLU GLU A . n A 1 58 THR 58 316 316 THR THR A . n A 1 59 PHE 59 317 317 PHE PHE A . n A 1 60 GLY 60 318 318 GLY GLY A . n A 1 61 THR 61 319 319 THR THR A . n A 1 62 TRP 62 320 320 TRP TRP A . n A 1 63 LEU 63 321 321 LEU LEU A . n A 1 64 ARG 64 322 322 ARG ARG A . n A 1 65 GLU 65 323 323 GLU GLU A . n A 1 66 SER 66 324 324 SER SER A . n A 1 67 ALA 67 325 325 ALA ALA A . n A 1 68 ASN 68 326 326 ASN ASN A . n A 1 69 ARG 69 327 327 ARG ARG A . n A 1 70 SER 70 328 328 SER SER A . n A 1 71 ASP 71 329 329 ASP ASP A . n A 1 72 ASP 72 330 330 ASP ASP A . n A 1 73 ARG 73 331 331 ARG ARG A . n A 1 74 ILE 74 332 332 ILE ILE A . n A 1 75 TRP 75 333 333 TRP TRP A . n A 1 76 VAL 76 334 334 VAL VAL A . n A 1 77 THR 77 335 335 THR THR A . n A 1 78 GLU 78 336 336 GLU GLU A . n A 1 79 HIS 79 337 337 HIS HIS A . n A 1 80 PHE 80 338 338 PHE PHE A . n A 1 81 SER 81 339 339 SER SER A . n A 1 82 GLY 82 340 340 GLY GLY A . n A 1 83 ILE 83 341 341 ILE ILE A . n A 1 84 MET 84 342 342 MET MET A . n A 1 85 VAL 85 343 343 VAL VAL A . n A 1 86 LYS 86 344 344 LYS LYS A . n A 1 87 GLU 87 345 345 GLU GLU A . n A 1 88 PHE 88 346 346 PHE PHE A . n A 1 89 GLU 89 347 347 GLU GLU A . n A 1 90 ASP 90 348 348 ASP ASP A . n A 1 91 LEU 91 349 349 LEU LEU A . n A 1 92 PRO 92 350 350 PRO PRO A . n A 1 93 ALA 93 351 351 ALA ALA A . n A 1 94 LEU 94 352 352 LEU LEU A . n A 1 95 LEU 95 353 353 LEU LEU A . n A 1 96 ASN 96 354 354 ASN ASN A . n A 1 97 SER 97 355 355 SER SER A . n A 1 98 SER 98 356 356 SER SER A . n A 1 99 PHE 99 357 357 PHE PHE A . n A 1 100 THR 100 358 358 THR THR A . n A 1 101 LEU 101 359 359 LEU LEU A . n A 1 102 LEU 102 360 360 LEU LEU A . n A 1 103 HIS 103 361 361 HIS HIS A . n A 1 104 LEU 104 362 362 LEU LEU A . n A 1 105 PRO 105 363 363 PRO PRO A . n A 1 106 HIS 106 364 364 HIS HIS A . n A 1 107 TYR 107 365 365 TYR TYR A . n A 1 108 PHE 108 366 366 PHE PHE A . n A 1 109 HIS 109 367 367 HIS HIS A . n A 1 110 GLY 110 368 368 GLY GLY A . n A 1 111 CYS 111 369 369 CYS CYS A . n A 1 112 GLY 112 370 370 GLY GLY A . n A 1 113 HIS 113 371 371 HIS HIS A . n A 1 114 ALA 114 372 372 ALA ALA A . n A 1 115 VAL 115 373 373 VAL VAL A . n A 1 116 TYR 116 374 374 TYR TYR A . n A 1 117 ASN 117 375 375 ASN ASN A . n A 1 118 ASN 118 376 376 ASN ASN A . n A 1 119 SER 119 377 377 SER SER A . n A 1 120 LEU 120 378 378 LEU LEU A . n A 1 121 TYR 121 379 379 TYR TYR A . n A 1 122 TYR 122 380 380 TYR TYR A . n A 1 123 HIS 123 381 381 HIS HIS A . n A 1 124 LYS 124 382 382 LYS LYS A . n A 1 125 GLY 125 383 383 GLY GLY A . n A 1 126 GLY 126 384 384 GLY GLY A . n A 1 127 SER 127 385 385 SER SER A . n A 1 128 ASN 128 386 386 ASN ASN A . n A 1 129 THR 129 387 387 THR THR A . n A 1 130 ILE 130 388 388 ILE ILE A . n A 1 131 VAL 131 389 389 VAL VAL A . n A 1 132 ARG 132 390 390 ARG ARG A . n A 1 133 PHE 133 391 391 PHE PHE A . n A 1 134 GLU 134 392 392 GLU GLU A . n A 1 135 PHE 135 393 393 PHE PHE A . n A 1 136 GLY 136 394 394 GLY GLY A . n A 1 137 LYS 137 395 395 LYS LYS A . n A 1 138 GLU 138 396 396 GLU GLU A . n A 1 139 THR 139 397 397 THR THR A . n A 1 140 PRO 140 398 398 PRO PRO A . n A 1 141 GLN 141 399 399 GLN GLN A . n A 1 142 THR 142 400 400 THR THR A . n A 1 143 LEU 143 401 401 LEU LEU A . n A 1 144 LYS 144 402 402 LYS LYS A . n A 1 145 LEU 145 403 403 LEU LEU A . n A 1 146 GLU 146 404 404 GLU GLU A . n A 1 147 ASP 147 405 405 ASP ASP A . n A 1 148 ALA 148 406 406 ALA ALA A . n A 1 149 LEU 149 407 407 LEU LEU A . n A 1 150 TYR 150 408 408 TYR TYR A . n A 1 151 PHE 151 409 409 PHE PHE A . n A 1 152 ASP 152 410 410 ASP ASP A . n A 1 153 ARG 153 411 411 ARG ARG A . n A 1 154 LYS 154 412 412 LYS LYS A . n A 1 155 TYR 155 413 413 TYR TYR A . n A 1 156 LEU 156 414 414 LEU LEU A . n A 1 157 PHE 157 415 415 PHE PHE A . n A 1 158 ALA 158 416 416 ALA ALA A . n A 1 159 ASN 159 417 417 ASN ASN A . n A 1 160 SER 160 418 418 SER SER A . n A 1 161 LYS 161 419 419 LYS LYS A . n A 1 162 THR 162 420 420 THR THR A . n A 1 163 TYR 163 421 421 TYR TYR A . n A 1 164 PHE 164 422 422 PHE PHE A . n A 1 165 ASN 165 423 423 ASN ASN A . n A 1 166 ILE 166 424 424 ILE ILE A . n A 1 167 ALA 167 425 425 ALA ALA A . n A 1 168 VAL 168 426 426 VAL VAL A . n A 1 169 ASP 169 427 427 ASP ASP A . n A 1 170 GLU 170 428 428 GLU GLU A . n A 1 171 LYS 171 429 429 LYS LYS A . n A 1 172 GLY 172 430 430 GLY GLY A . n A 1 173 LEU 173 431 431 LEU LEU A . n A 1 174 TRP 174 432 432 TRP TRP A . n A 1 175 ILE 175 433 433 ILE ILE A . n A 1 176 ILE 176 434 434 ILE ILE A . n A 1 177 TYR 177 435 435 TYR TYR A . n A 1 178 ALA 178 436 436 ALA ALA A . n A 1 179 SER 179 437 437 SER SER A . n A 1 180 SER 180 438 438 SER SER A . n A 1 181 VAL 181 439 439 VAL VAL A . n A 1 182 ASP 182 440 440 ASP ASP A . n A 1 183 GLY 183 441 441 GLY GLY A . n A 1 184 SER 184 442 442 SER SER A . n A 1 185 SER 185 443 443 SER SER A . n A 1 186 ILE 186 444 444 ILE ILE A . n A 1 187 LEU 187 445 445 LEU LEU A . n A 1 188 VAL 188 446 446 VAL VAL A . n A 1 189 ALA 189 447 447 ALA ALA A . n A 1 190 GLN 190 448 448 GLN GLN A . n A 1 191 LEU 191 449 449 LEU LEU A . n A 1 192 ASP 192 450 450 ASP ASP A . n A 1 193 GLU 193 451 451 GLU GLU A . n A 1 194 ARG 194 452 452 ARG ARG A . n A 1 195 THR 195 453 453 THR THR A . n A 1 196 PHE 196 454 454 PHE PHE A . n A 1 197 SER 197 455 455 SER SER A . n A 1 198 VAL 198 456 456 VAL VAL A . n A 1 199 LEU 199 457 457 LEU LEU A . n A 1 200 ARG 200 458 458 ARG ARG A . n A 1 201 HIS 201 459 459 HIS HIS A . n A 1 202 ILE 202 460 460 ILE ILE A . n A 1 203 ASN 203 461 461 ASN ASN A . n A 1 204 THR 204 462 462 THR THR A . n A 1 205 THR 205 463 463 THR THR A . n A 1 206 TYR 206 464 464 TYR TYR A . n A 1 207 PRO 207 465 465 PRO PRO A . n A 1 208 LYS 208 466 466 LYS LYS A . n A 1 209 SER 209 467 467 SER SER A . n A 1 210 LYS 210 468 468 LYS LYS A . n A 1 211 ALA 211 469 469 ALA ALA A . n A 1 212 GLY 212 470 470 GLY GLY A . n A 1 213 ASN 213 471 471 ASN ASN A . n A 1 214 ALA 214 472 472 ALA ALA A . n A 1 215 PHE 215 473 473 PHE PHE A . n A 1 216 ILE 216 474 474 ILE ILE A . n A 1 217 ALA 217 475 475 ALA ALA A . n A 1 218 GLN 218 476 476 GLN GLN A . n A 1 219 GLY 219 477 477 GLY GLY A . n A 1 220 ILE 220 478 478 ILE ILE A . n A 1 221 LEU 221 479 479 LEU LEU A . n A 1 222 TYR 222 480 480 TYR TYR A . n A 1 223 VAL 223 481 481 VAL VAL A . n A 1 224 THR 224 482 482 THR THR A . n A 1 225 ASP 225 483 483 ASP ASP A . n A 1 226 THR 226 484 484 THR THR A . n A 1 227 LYS 227 485 485 LYS LYS A . n A 1 228 ASP 228 486 486 ASP ASP A . n A 1 229 THR 229 487 487 THR THR A . n A 1 230 ARG 230 488 488 ARG ARG A . n A 1 231 VAL 231 489 489 VAL VAL A . n A 1 232 THR 232 490 490 THR THR A . n A 1 233 PHE 233 491 491 PHE PHE A . n A 1 234 ALA 234 492 492 ALA ALA A . n A 1 235 PHE 235 493 493 PHE PHE A . n A 1 236 ASP 236 494 494 ASP ASP A . n A 1 237 LEU 237 495 495 LEU LEU A . n A 1 238 LEU 238 496 496 LEU LEU A . n A 1 239 ARG 239 497 497 ARG ARG A . n A 1 240 GLY 240 498 498 GLY GLY A . n A 1 241 LYS 241 499 499 LYS LYS A . n A 1 242 GLN 242 500 500 GLN GLN A . n A 1 243 ILE 243 501 501 ILE ILE A . n A 1 244 ASN 244 502 502 ASN ASN A . n A 1 245 ALA 245 503 503 ALA ALA A . n A 1 246 ASN 246 504 504 ASN ASN A . n A 1 247 PHE 247 505 505 PHE PHE A . n A 1 248 GLY 248 506 506 GLY GLY A . n A 1 249 LEU 249 507 507 LEU LEU A . n A 1 250 ARG 250 508 508 ARG ARG A . n A 1 251 MET 251 509 509 MET MET A . n A 1 252 SER 252 510 510 SER SER A . n A 1 253 GLN 253 511 511 GLN GLN A . n A 1 254 SER 254 512 512 SER SER A . n A 1 255 VAL 255 513 513 VAL VAL A . n A 1 256 LEU 256 514 514 LEU LEU A . n A 1 257 ALA 257 515 515 ALA ALA A . n A 1 258 MET 258 516 516 MET MET A . n A 1 259 LEU 259 517 517 LEU LEU A . n A 1 260 SER 260 518 518 SER SER A . n A 1 261 TYR 261 519 519 TYR TYR A . n A 1 262 ASN 262 520 520 ASN ASN A . n A 1 263 MET 263 521 521 MET MET A . n A 1 264 ARG 264 522 522 ARG ARG A . n A 1 265 ASP 265 523 523 ASP ASP A . n A 1 266 GLN 266 524 524 GLN GLN A . n A 1 267 HIS 267 525 525 HIS HIS A . n A 1 268 LEU 268 526 526 LEU LEU A . n A 1 269 TYR 269 527 527 TYR TYR A . n A 1 270 SER 270 528 528 SER SER A . n A 1 271 TRP 271 529 529 TRP TRP A . n A 1 272 GLU 272 530 530 GLU GLU A . n A 1 273 ASP 273 531 531 ASP ASP A . n A 1 274 GLY 274 532 532 GLY GLY A . n A 1 275 HIS 275 533 533 HIS HIS A . n A 1 276 LEU 276 534 534 LEU LEU A . n A 1 277 MET 277 535 535 MET MET A . n A 1 278 LEU 278 536 536 LEU LEU A . n A 1 279 TYR 279 537 537 TYR TYR A . n A 1 280 PRO 280 538 538 PRO PRO A . n A 1 281 VAL 281 539 539 VAL VAL A . n A 1 282 HIS 282 540 540 HIS HIS A . n A 1 283 PHE 283 541 541 PHE PHE A . n A 1 284 SER 284 542 542 SER SER A . n A 1 285 SER 285 543 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA 1 1543 1543 NA NA A . C 3 MPD 1 1544 1544 MPD MPD A . D 3 MPD 1 1545 1545 MPD MPD A . E 3 MPD 1 1546 1546 MPD MPD A . F 4 HOH 1 2001 2001 HOH HOH A . F 4 HOH 2 2002 2002 HOH HOH A . F 4 HOH 3 2003 2003 HOH HOH A . F 4 HOH 4 2004 2004 HOH HOH A . F 4 HOH 5 2005 2005 HOH HOH A . F 4 HOH 6 2006 2006 HOH HOH A . F 4 HOH 7 2007 2007 HOH HOH A . F 4 HOH 8 2008 2008 HOH HOH A . F 4 HOH 9 2009 2009 HOH HOH A . F 4 HOH 10 2010 2010 HOH HOH A . F 4 HOH 11 2011 2011 HOH HOH A . F 4 HOH 12 2012 2012 HOH HOH A . F 4 HOH 13 2013 2013 HOH HOH A . F 4 HOH 14 2014 2014 HOH HOH A . F 4 HOH 15 2015 2015 HOH HOH A . F 4 HOH 16 2016 2016 HOH HOH A . F 4 HOH 17 2017 2017 HOH HOH A . F 4 HOH 18 2018 2018 HOH HOH A . F 4 HOH 19 2019 2019 HOH HOH A . F 4 HOH 20 2020 2020 HOH HOH A . F 4 HOH 21 2021 2021 HOH HOH A . F 4 HOH 22 2023 2023 HOH HOH A . F 4 HOH 23 2024 2024 HOH HOH A . F 4 HOH 24 2025 2025 HOH HOH A . F 4 HOH 25 2026 2026 HOH HOH A . F 4 HOH 26 2027 2027 HOH HOH A . F 4 HOH 27 2028 2028 HOH HOH A . F 4 HOH 28 2029 2029 HOH HOH A . F 4 HOH 29 2030 2030 HOH HOH A . F 4 HOH 30 2031 2031 HOH HOH A . F 4 HOH 31 2032 2032 HOH HOH A . F 4 HOH 32 2033 2033 HOH HOH A . F 4 HOH 33 2034 2034 HOH HOH A . F 4 HOH 34 2035 2035 HOH HOH A . F 4 HOH 35 2036 2036 HOH HOH A . F 4 HOH 36 2037 2037 HOH HOH A . F 4 HOH 37 2038 2038 HOH HOH A . F 4 HOH 38 2039 2039 HOH HOH A . F 4 HOH 39 2040 2040 HOH HOH A . F 4 HOH 40 2041 2041 HOH HOH A . F 4 HOH 41 2042 2042 HOH HOH A . F 4 HOH 42 2043 2043 HOH HOH A . F 4 HOH 43 2044 2044 HOH HOH A . F 4 HOH 44 2045 2045 HOH HOH A . F 4 HOH 45 2046 2046 HOH HOH A . F 4 HOH 46 2047 2047 HOH HOH A . F 4 HOH 47 2048 2048 HOH HOH A . F 4 HOH 48 2049 2049 HOH HOH A . F 4 HOH 49 2050 2050 HOH HOH A . F 4 HOH 50 2051 2051 HOH HOH A . F 4 HOH 51 2052 2052 HOH HOH A . F 4 HOH 52 2053 2053 HOH HOH A . F 4 HOH 53 2054 2054 HOH HOH A . F 4 HOH 54 2055 2055 HOH HOH A . F 4 HOH 55 2056 2056 HOH HOH A . F 4 HOH 56 2057 2057 HOH HOH A . F 4 HOH 57 2058 2058 HOH HOH A . F 4 HOH 58 2059 2059 HOH HOH A . F 4 HOH 59 2060 2060 HOH HOH A . F 4 HOH 60 2061 2061 HOH HOH A . F 4 HOH 61 2062 2062 HOH HOH A . F 4 HOH 62 2063 2063 HOH HOH A . F 4 HOH 63 2064 2064 HOH HOH A . F 4 HOH 64 2065 2065 HOH HOH A . F 4 HOH 65 2066 2066 HOH HOH A . F 4 HOH 66 2067 2067 HOH HOH A . F 4 HOH 67 2068 2068 HOH HOH A . F 4 HOH 68 2069 2069 HOH HOH A . F 4 HOH 69 2070 2070 HOH HOH A . F 4 HOH 70 2071 2071 HOH HOH A . F 4 HOH 71 2072 2072 HOH HOH A . F 4 HOH 72 2073 2073 HOH HOH A . F 4 HOH 73 2074 2074 HOH HOH A . F 4 HOH 74 2075 2075 HOH HOH A . F 4 HOH 75 2076 2076 HOH HOH A . F 4 HOH 76 2077 2077 HOH HOH A . F 4 HOH 77 2078 2078 HOH HOH A . F 4 HOH 78 2079 2079 HOH HOH A . F 4 HOH 79 2080 2080 HOH HOH A . F 4 HOH 80 2081 2081 HOH HOH A . F 4 HOH 81 2082 2082 HOH HOH A . F 4 HOH 82 2083 2083 HOH HOH A . F 4 HOH 83 2084 2084 HOH HOH A . F 4 HOH 84 2085 2085 HOH HOH A . F 4 HOH 85 2086 2086 HOH HOH A . F 4 HOH 86 2087 2087 HOH HOH A . F 4 HOH 87 2088 2088 HOH HOH A . F 4 HOH 88 2089 2089 HOH HOH A . F 4 HOH 89 2090 2090 HOH HOH A . F 4 HOH 90 2091 2091 HOH HOH A . F 4 HOH 91 2092 2092 HOH HOH A . F 4 HOH 92 2093 2093 HOH HOH A . F 4 HOH 93 2094 2094 HOH HOH A . F 4 HOH 94 2095 2095 HOH HOH A . F 4 HOH 95 2096 2096 HOH HOH A . F 4 HOH 96 2097 2097 HOH HOH A . F 4 HOH 97 2098 2098 HOH HOH A . F 4 HOH 98 2099 2099 HOH HOH A . F 4 HOH 99 2100 2100 HOH HOH A . F 4 HOH 100 2101 2101 HOH HOH A . F 4 HOH 101 2102 2102 HOH HOH A . F 4 HOH 102 2103 2103 HOH HOH A . F 4 HOH 103 2104 2104 HOH HOH A . F 4 HOH 104 2105 2105 HOH HOH A . F 4 HOH 105 2106 2106 HOH HOH A . F 4 HOH 106 2107 2107 HOH HOH A . F 4 HOH 107 2108 2108 HOH HOH A . F 4 HOH 108 2109 2109 HOH HOH A . F 4 HOH 109 2110 2110 HOH HOH A . F 4 HOH 110 2111 2111 HOH HOH A . F 4 HOH 111 2112 2112 HOH HOH A . F 4 HOH 112 2113 2113 HOH HOH A . F 4 HOH 113 2114 2114 HOH HOH A . F 4 HOH 114 2115 2115 HOH HOH A . F 4 HOH 115 2116 2116 HOH HOH A . F 4 HOH 116 2117 2117 HOH HOH A . F 4 HOH 117 2118 2118 HOH HOH A . F 4 HOH 118 2119 2119 HOH HOH A . F 4 HOH 119 2120 2120 HOH HOH A . F 4 HOH 120 2121 2121 HOH HOH A . F 4 HOH 121 2122 2122 HOH HOH A . F 4 HOH 122 2123 2123 HOH HOH A . F 4 HOH 123 2124 2124 HOH HOH A . F 4 HOH 124 2125 2125 HOH HOH A . F 4 HOH 125 2126 2126 HOH HOH A . F 4 HOH 126 2127 2127 HOH HOH A . F 4 HOH 127 2128 2128 HOH HOH A . F 4 HOH 128 2129 2129 HOH HOH A . F 4 HOH 129 2130 2130 HOH HOH A . F 4 HOH 130 2131 2131 HOH HOH A . F 4 HOH 131 2132 2132 HOH HOH A . F 4 HOH 132 2133 2133 HOH HOH A . F 4 HOH 133 2134 2134 HOH HOH A . F 4 HOH 134 2135 2135 HOH HOH A . F 4 HOH 135 2136 2136 HOH HOH A . F 4 HOH 136 2137 2137 HOH HOH A . F 4 HOH 137 2138 2138 HOH HOH A . F 4 HOH 138 2139 2139 HOH HOH A . F 4 HOH 139 2140 2140 HOH HOH A . F 4 HOH 140 2141 2141 HOH HOH A . F 4 HOH 141 2142 2142 HOH HOH A . F 4 HOH 142 2143 2143 HOH HOH A . F 4 HOH 143 2144 2144 HOH HOH A . F 4 HOH 144 2145 2145 HOH HOH A . F 4 HOH 145 2146 2146 HOH HOH A . F 4 HOH 146 2147 2147 HOH HOH A . F 4 HOH 147 2148 2148 HOH HOH A . F 4 HOH 148 2149 2149 HOH HOH A . F 4 HOH 149 2150 2150 HOH HOH A . F 4 HOH 150 2151 2151 HOH HOH A . F 4 HOH 151 2152 2152 HOH HOH A . F 4 HOH 152 2153 2153 HOH HOH A . F 4 HOH 153 2154 2154 HOH HOH A . F 4 HOH 154 2155 2155 HOH HOH A . F 4 HOH 155 2156 2156 HOH HOH A . F 4 HOH 156 2157 2157 HOH HOH A . F 4 HOH 157 2158 2158 HOH HOH A . F 4 HOH 158 2159 2159 HOH HOH A . F 4 HOH 159 2160 2160 HOH HOH A . F 4 HOH 160 2161 2161 HOH HOH A . F 4 HOH 161 2162 2162 HOH HOH A . F 4 HOH 162 2163 2163 HOH HOH A . F 4 HOH 163 2164 2164 HOH HOH A . F 4 HOH 164 2165 2165 HOH HOH A . F 4 HOH 165 2166 2166 HOH HOH A . F 4 HOH 166 2167 2167 HOH HOH A . F 4 HOH 167 2168 2168 HOH HOH A . F 4 HOH 168 2169 2169 HOH HOH A . F 4 HOH 169 2170 2170 HOH HOH A . F 4 HOH 170 2171 2171 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A LEU 259 ? A LEU 517 ? 1_555 NA ? B NA . ? A NA 1543 ? 1_555 O ? F HOH . ? A HOH 2063 ? 1_555 83.4 ? 2 O ? A LEU 259 ? A LEU 517 ? 1_555 NA ? B NA . ? A NA 1543 ? 1_555 O ? A ALA 214 ? A ALA 472 ? 1_555 87.3 ? 3 O ? F HOH . ? A HOH 2063 ? 1_555 NA ? B NA . ? A NA 1543 ? 1_555 O ? A ALA 214 ? A ALA 472 ? 1_555 169.5 ? 4 O ? A LEU 259 ? A LEU 517 ? 1_555 NA ? B NA . ? A NA 1543 ? 1_555 OD1 ? A ASN 165 ? A ASN 423 ? 1_555 134.3 ? 5 O ? F HOH . ? A HOH 2063 ? 1_555 NA ? B NA . ? A NA 1543 ? 1_555 OD1 ? A ASN 165 ? A ASN 423 ? 1_555 92.0 ? 6 O ? A ALA 214 ? A ALA 472 ? 1_555 NA ? B NA . ? A NA 1543 ? 1_555 OD1 ? A ASN 165 ? A ASN 423 ? 1_555 98.0 ? 7 O ? A LEU 259 ? A LEU 517 ? 1_555 NA ? B NA . ? A NA 1543 ? 1_555 OD1 ? A ASN 213 ? A ASN 471 ? 1_555 116.1 ? 8 O ? F HOH . ? A HOH 2063 ? 1_555 NA ? B NA . ? A NA 1543 ? 1_555 OD1 ? A ASN 213 ? A ASN 471 ? 1_555 90.1 ? 9 O ? A ALA 214 ? A ALA 472 ? 1_555 NA ? B NA . ? A NA 1543 ? 1_555 OD1 ? A ASN 213 ? A ASN 471 ? 1_555 89.5 ? 10 OD1 ? A ASN 165 ? A ASN 423 ? 1_555 NA ? B NA . ? A NA 1543 ? 1_555 OD1 ? A ASN 213 ? A ASN 471 ? 1_555 109.3 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-12-24 2 'Structure model' 1 1 2014-12-31 3 'Structure model' 1 2 2015-01-14 4 'Structure model' 1 3 2015-03-04 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Atomic model' 3 3 'Structure model' 'Derived calculations' 4 4 'Structure model' 'Database references' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHENIX refinement '(PHENIX.REFINE)' ? 1 XDS 'data reduction' . ? 2 XDS 'data scaling' . ? 3 Auto-Rickshaw phasing . ? 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 2099 ? ? O A HOH 2140 ? ? 2.17 2 1 O A HOH 2062 ? ? O A HOH 2103 ? ? 2.17 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 2051 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 2145 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 1_455 _pdbx_validate_symm_contact.dist 2.06 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 NE _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 508 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CZ _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 508 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 NH2 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 508 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 116.81 _pdbx_validate_rmsd_angle.angle_target_value 120.30 _pdbx_validate_rmsd_angle.angle_deviation -3.49 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.50 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 337 ? ? 71.34 -177.18 2 1 ASN A 386 ? ? -96.71 35.19 3 1 TYR A 408 ? ? -153.91 -6.68 4 1 SER A 442 ? ? -140.27 -44.85 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 259 ? A GLY 1 2 1 Y 1 A GLN 260 ? A GLN 2 3 1 Y 1 A PRO 261 ? A PRO 3 4 1 Y 1 A ASN 262 ? A ASN 4 5 1 Y 1 A SER 263 ? A SER 5 6 1 Y 1 A PHE 264 ? A PHE 6 7 1 Y 1 A THR 265 ? A THR 7 8 1 Y 1 A ASN 266 ? A ASN 8 9 1 Y 1 A GLN 267 ? A GLN 9 10 1 Y 1 A CYS 268 ? A CYS 10 11 1 Y 1 A PRO 269 ? A PRO 11 12 1 Y 1 A GLY 270 ? A GLY 12 13 1 Y 1 A GLU 271 ? A GLU 13 14 1 Y 1 A THR 272 ? A THR 14 15 1 Y 1 A CYS 273 ? A CYS 15 16 1 Y 1 A VAL 274 ? A VAL 16 17 1 Y 1 A ILE 275 ? A ILE 17 18 1 Y 1 A PRO 276 ? A PRO 18 19 1 Y 1 A ASN 277 ? A ASN 19 20 1 Y 1 A ASP 278 ? A ASP 20 21 1 Y 1 A ASP 279 ? A ASP 21 22 1 Y 1 A THR 280 ? A THR 22 23 1 Y 1 A LEU 281 ? A LEU 23 24 1 Y 1 A VAL 282 ? A VAL 24 25 1 Y 1 A GLY 283 ? A GLY 25 26 1 Y 1 A ARG 284 ? A ARG 26 27 1 Y 1 A ALA 285 ? A ALA 27 28 1 Y 1 A ASP 286 ? A ASP 28 29 1 Y 1 A GLU 287 ? A GLU 29 30 1 Y 1 A LYS 288 ? A LYS 30 31 1 Y 1 A VAL 289 ? A VAL 31 32 1 Y 1 A ASN 290 ? A ASN 32 33 1 Y 1 A GLU 291 ? A GLU 33 34 1 Y 1 A ARG 292 ? A ARG 34 35 1 Y 1 A HIS 293 ? A HIS 35 36 1 Y 1 A SER 294 ? A SER 36 37 1 Y 1 A PRO 295 ? A PRO 37 38 1 Y 1 A GLN 296 ? A GLN 38 39 1 Y 1 A THR 297 ? A THR 39 40 1 Y 1 A SER 543 ? A SER 285 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SODIUM ION' NA 3 '(4S)-2-METHYL-2,4-PENTANEDIOL' MPD 4 water HOH #