data_4DA3 # _entry.id 4DA3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4DA3 pdb_00004da3 10.2210/pdb4da3/pdb NDB NA1555 ? ? RCSB RCSB070072 ? ? WWPDB D_1000070072 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4DAQ 'Similar naphthalene diimide compound bound to the same 21-mer human telomeric G-quadruplex.' unspecified PDB 3UYH 'Same naphthalene diimide compound bound to a 22-mer human telomeric G-quadruplex.' unspecified PDB 3SC8 'Similar naphthalene diimide compound bound to a 22-mer human telomeric G-quadruplex.' unspecified PDB 3T5E 'Similar naphthalene diimide compound bound to a 22-mer human telomeric G-quadruplex.' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4DA3 _pdbx_database_status.recvd_initial_deposition_date 2012-01-12 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Collie, G.W.' 1 'Neidle, S.' 2 # _citation.id primary _citation.title ;Structure-based design and evaluation of naphthalene diimide g-quadruplex ligands as telomere targeting agents in pancreatic cancer cells. ; _citation.journal_abbrev J.Med.Chem. _citation.journal_volume 56 _citation.page_first 2959 _citation.page_last 2974 _citation.year 2013 _citation.journal_id_ASTM JMCMAR _citation.country US _citation.journal_id_ISSN 0022-2623 _citation.journal_id_CSD 0151 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23514618 _citation.pdbx_database_id_DOI 10.1021/jm301899y # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Micco, M.' 1 ? primary 'Collie, G.W.' 2 ? primary 'Dale, A.G.' 3 ? primary 'Ohnmacht, S.A.' 4 ? primary 'Pazitna, I.' 5 ? primary 'Gunaratnam, M.' 6 ? primary 'Reszka, A.P.' 7 ? primary 'Neidle, S.' 8 ? # _cell.entry_id 4DA3 _cell.length_a 51.310 _cell.length_b 51.310 _cell.length_c 51.940 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4DA3 _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*G)-3') ; 6670.290 1 ? ? ? ? 2 non-polymer syn 'POTASSIUM ION' 39.098 3 ? ? ? ? 3 non-polymer syn ;4,9-bis{[3-(4-methylpiperazin-1-yl)propyl]amino}-2,7-bis[3-(morpholin-4-yl)propyl]benzo[lmn][3,8]phenanthroline-1,3,6,8(2H,7H)-tetrone ; 831.058 1 ? ? ? ? 4 water nat water 18.015 25 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;(DG)(DG)(DG)(DT)(DT)(DA)(DG)(DG)(DG)(DT)(DT)(DA)(DG)(DG)(DG)(DT)(DT)(DA)(DG)(DG) (DG) ; _entity_poly.pdbx_seq_one_letter_code_can GGGTTAGGGTTAGGGTTAGGG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DG n 1 3 DG n 1 4 DT n 1 5 DT n 1 6 DA n 1 7 DG n 1 8 DG n 1 9 DG n 1 10 DT n 1 11 DT n 1 12 DA n 1 13 DG n 1 14 DG n 1 15 DG n 1 16 DT n 1 17 DT n 1 18 DA n 1 19 DG n 1 20 DG n 1 21 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Synthetic DNA' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details 'DNA synthesized by standard phosphoramidite chemistry.' # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4DA3 _struct_ref.pdbx_db_accession 4DA3 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code GGGTTAGGGTTAGGGTTAGGG _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4DA3 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 21 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 4DA3 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 21 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 21 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 0DX non-polymer . ;4,9-bis{[3-(4-methylpiperazin-1-yl)propyl]amino}-2,7-bis[3-(morpholin-4-yl)propyl]benzo[lmn][3,8]phenanthroline-1,3,6,8(2H,7H)-tetrone ; ? 'C44 H66 N10 O6' 831.058 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 # _exptl.entry_id 4DA3 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.96 _exptl_crystal.density_percent_sol 58.43 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details '15% PEG400, 150 mM sodium chloride and 50 mM sodium cacodylate (pH 6.5), VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2011-12-16 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI 111 CHANNEL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9795 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I04' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I04 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9795 # _reflns.entry_id 4DA3 _reflns.observed_criterion_sigma_I 2 _reflns.observed_criterion_sigma_F 2 _reflns.d_resolution_low 25.97 _reflns.d_resolution_high 2.27 _reflns.number_obs 3843 _reflns.number_all 3843 _reflns.percent_possible_obs 98.9 _reflns.pdbx_Rmerge_I_obs 0.038 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 23.9 _reflns.B_iso_Wilson_estimate 66.213 _reflns.pdbx_redundancy 6.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.27 _reflns_shell.d_res_low 2.33 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.597 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.3 _reflns_shell.pdbx_redundancy 5.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 278 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4DA3 _refine.ls_number_reflns_obs 3098 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 14.81 _refine.ls_d_res_high 2.40 _refine.ls_percent_reflns_obs 98.34 _refine.ls_R_factor_obs 0.24424 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.24221 _refine.ls_R_factor_R_free 0.28202 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.6 _refine.ls_number_reflns_R_free 151 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.939 _refine.correlation_coeff_Fo_to_Fc_free 0.921 _refine.B_iso_mean 39.532 _refine.aniso_B[1][1] -0.01 _refine.aniso_B[2][2] -0.01 _refine.aniso_B[3][3] 0.01 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT' _refine.pdbx_starting_model 'PDB ENTRY 3SC8' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.441 _refine.pdbx_overall_ESU_R_Free 0.287 _refine.overall_SU_ML 0.226 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 10.523 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 444 _refine_hist.pdbx_number_atoms_ligand 63 _refine_hist.number_atoms_solvent 25 _refine_hist.number_atoms_total 532 _refine_hist.d_res_high 2.40 _refine_hist.d_res_low 14.81 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.008 0.012 ? 567 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.727 1.505 ? 869 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.070 0.200 ? 63 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.009 0.020 ? 261 ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.400 _refine_ls_shell.d_res_low 2.461 _refine_ls_shell.number_reflns_R_work 196 _refine_ls_shell.R_factor_R_work 0.457 _refine_ls_shell.percent_reflns_obs 99.03 _refine_ls_shell.R_factor_R_free 0.571 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 9 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4DA3 _struct.title 'Crystal structure of an intramolecular human telomeric DNA G-quadruplex 21-mer bound by the naphthalene diimide compound MM41.' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4DA3 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'intramolecular, ligand-complex, G-quadruplex, telomere, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 1 O6 ? ? ? 1_555 C K . K ? ? A DG 1 A K 102 1_555 ? ? ? ? ? ? ? 2.787 ? ? metalc2 metalc ? ? A DG 1 O6 ? ? ? 1_555 D K . K ? ? A DG 1 A K 103 1_555 ? ? ? ? ? ? ? 3.253 ? ? metalc3 metalc ? ? A DG 2 O6 ? ? ? 1_555 B K . K ? ? A DG 2 A K 101 1_555 ? ? ? ? ? ? ? 2.874 ? ? metalc4 metalc ? ? A DG 2 O6 ? ? ? 1_555 C K . K ? ? A DG 2 A K 102 1_555 ? ? ? ? ? ? ? 2.820 ? ? metalc5 metalc ? ? A DG 3 O6 ? ? ? 1_555 B K . K ? ? A DG 3 A K 101 1_555 ? ? ? ? ? ? ? 2.629 ? ? metalc6 metalc ? ? A DG 7 O6 ? ? ? 1_555 C K . K ? ? A DG 7 A K 102 1_555 ? ? ? ? ? ? ? 2.838 ? ? metalc7 metalc ? ? A DG 7 O6 ? ? ? 1_555 D K . K ? ? A DG 7 A K 103 1_555 ? ? ? ? ? ? ? 2.671 ? ? metalc8 metalc ? ? A DG 8 O6 ? ? ? 1_555 B K . K ? ? A DG 8 A K 101 1_555 ? ? ? ? ? ? ? 2.941 ? ? metalc9 metalc ? ? A DG 8 O6 ? ? ? 1_555 C K . K ? ? A DG 8 A K 102 1_555 ? ? ? ? ? ? ? 2.734 ? ? metalc10 metalc ? ? A DG 9 O6 ? ? ? 1_555 B K . K ? ? A DG 9 A K 101 1_555 ? ? ? ? ? ? ? 2.620 ? ? metalc11 metalc ? ? A DG 13 O6 ? ? ? 1_555 C K . K ? ? A DG 13 A K 102 1_555 ? ? ? ? ? ? ? 3.358 ? ? metalc12 metalc ? ? A DG 13 O6 ? ? ? 1_555 D K . K ? ? A DG 13 A K 103 1_555 ? ? ? ? ? ? ? 2.795 ? ? metalc13 metalc ? ? A DG 14 O6 ? ? ? 1_555 B K . K ? ? A DG 14 A K 101 1_555 ? ? ? ? ? ? ? 3.172 ? ? metalc14 metalc ? ? A DG 14 O6 ? ? ? 1_555 C K . K ? ? A DG 14 A K 102 1_555 ? ? ? ? ? ? ? 2.865 ? ? metalc15 metalc ? ? A DG 15 O6 ? ? ? 1_555 B K . K ? ? A DG 15 A K 101 1_555 ? ? ? ? ? ? ? 2.751 ? ? metalc16 metalc ? ? A DG 19 O6 ? ? ? 1_555 C K . K ? ? A DG 19 A K 102 1_555 ? ? ? ? ? ? ? 3.047 ? ? metalc17 metalc ? ? A DG 19 O6 ? ? ? 1_555 D K . K ? ? A DG 19 A K 103 1_555 ? ? ? ? ? ? ? 3.023 ? ? metalc18 metalc ? ? A DG 20 O6 ? ? ? 1_555 B K . K ? ? A DG 20 A K 101 1_555 ? ? ? ? ? ? ? 2.975 ? ? metalc19 metalc ? ? A DG 20 O6 ? ? ? 1_555 C K . K ? ? A DG 20 A K 102 1_555 ? ? ? ? ? ? ? 2.709 ? ? metalc20 metalc ? ? A DG 21 O6 ? ? ? 1_555 B K . K ? ? A DG 21 A K 101 1_555 ? ? ? ? ? ? ? 2.737 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DG 7 O6 ? ? A DG 1 A DG 7 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DG 7 N7 ? ? A DG 1 A DG 7 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? A DG 1 N7 ? ? ? 1_555 A DG 19 N2 ? ? A DG 1 A DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DG 19 N1 ? ? A DG 1 A DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DG 8 O6 ? ? A DG 2 A DG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DG 8 N7 ? ? A DG 2 A DG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A DG 2 N7 ? ? ? 1_555 A DG 20 N2 ? ? A DG 2 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DG 20 N1 ? ? A DG 2 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DG 9 O6 ? ? A DG 3 A DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog10 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DG 9 N7 ? ? A DG 3 A DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? A DG 3 N7 ? ? ? 1_555 A DG 21 N2 ? ? A DG 3 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog12 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DG 21 N1 ? ? A DG 3 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? A DG 7 N1 ? ? ? 1_555 A DG 13 O6 ? ? A DG 7 A DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog14 hydrog ? ? A DG 7 N2 ? ? ? 1_555 A DG 13 N7 ? ? A DG 7 A DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? A DG 8 N1 ? ? ? 1_555 A DG 14 O6 ? ? A DG 8 A DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? A DG 8 N2 ? ? ? 1_555 A DG 14 N7 ? ? A DG 8 A DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? A DG 9 N1 ? ? ? 1_555 A DG 15 O6 ? ? A DG 9 A DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? A DG 9 N2 ? ? ? 1_555 A DG 15 N7 ? ? A DG 9 A DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog19 hydrog ? ? A DG 13 N1 ? ? ? 1_555 A DG 19 O6 ? ? A DG 13 A DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog20 hydrog ? ? A DG 13 N2 ? ? ? 1_555 A DG 19 N7 ? ? A DG 13 A DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog21 hydrog ? ? A DG 14 N1 ? ? ? 1_555 A DG 20 O6 ? ? A DG 14 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? A DG 14 N2 ? ? ? 1_555 A DG 20 N7 ? ? A DG 14 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? A DG 15 N2 ? ? ? 1_555 A DG 20 N7 ? ? A DG 15 A DG 20 1_555 ? ? ? ? ? ? 'DG-DG MISPAIR' ? ? ? hydrog24 hydrog ? ? A DG 15 N1 ? ? ? 1_555 A DG 21 O6 ? ? A DG 15 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog25 hydrog ? ? A DG 15 N2 ? ? ? 1_555 A DG 21 N7 ? ? A DG 15 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A K 101 ? 9 'BINDING SITE FOR RESIDUE K A 101' AC2 Software A K 102 ? 11 'BINDING SITE FOR RESIDUE K A 102' AC3 Software A K 103 ? 10 'BINDING SITE FOR RESIDUE K A 103' AC4 Software A 0DX 104 ? 11 'BINDING SITE FOR RESIDUE 0DX A 104' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 DG A 2 ? DG A 2 . ? 1_555 ? 2 AC1 9 DG A 3 ? DG A 3 . ? 1_555 ? 3 AC1 9 DG A 8 ? DG A 8 . ? 1_555 ? 4 AC1 9 DG A 9 ? DG A 9 . ? 1_555 ? 5 AC1 9 DG A 14 ? DG A 14 . ? 1_555 ? 6 AC1 9 DG A 15 ? DG A 15 . ? 1_555 ? 7 AC1 9 DG A 20 ? DG A 20 . ? 1_555 ? 8 AC1 9 DG A 21 ? DG A 21 . ? 1_555 ? 9 AC1 9 K C . ? K A 102 . ? 1_555 ? 10 AC2 11 DG A 1 ? DG A 1 . ? 1_555 ? 11 AC2 11 DG A 2 ? DG A 2 . ? 1_555 ? 12 AC2 11 DG A 7 ? DG A 7 . ? 1_555 ? 13 AC2 11 DG A 8 ? DG A 8 . ? 1_555 ? 14 AC2 11 DG A 13 ? DG A 13 . ? 1_555 ? 15 AC2 11 DG A 14 ? DG A 14 . ? 1_555 ? 16 AC2 11 DG A 19 ? DG A 19 . ? 1_555 ? 17 AC2 11 DG A 20 ? DG A 20 . ? 1_555 ? 18 AC2 11 K B . ? K A 101 . ? 1_555 ? 19 AC2 11 K D . ? K A 103 . ? 6_555 ? 20 AC2 11 K D . ? K A 103 . ? 1_555 ? 21 AC3 10 DG A 1 ? DG A 1 . ? 6_555 ? 22 AC3 10 DG A 1 ? DG A 1 . ? 1_555 ? 23 AC3 10 DG A 7 ? DG A 7 . ? 6_555 ? 24 AC3 10 DG A 7 ? DG A 7 . ? 1_555 ? 25 AC3 10 DG A 13 ? DG A 13 . ? 1_555 ? 26 AC3 10 DG A 13 ? DG A 13 . ? 6_555 ? 27 AC3 10 DG A 19 ? DG A 19 . ? 1_555 ? 28 AC3 10 DG A 19 ? DG A 19 . ? 6_555 ? 29 AC3 10 K C . ? K A 102 . ? 6_555 ? 30 AC3 10 K C . ? K A 102 . ? 1_555 ? 31 AC4 11 DG A 3 ? DG A 3 . ? 1_555 ? 32 AC4 11 DT A 5 ? DT A 5 . ? 3_654 ? 33 AC4 11 DG A 9 ? DG A 9 . ? 1_555 ? 34 AC4 11 DT A 10 ? DT A 10 . ? 1_555 ? 35 AC4 11 DT A 11 ? DT A 11 . ? 4_655 ? 36 AC4 11 DA A 12 ? DA A 12 . ? 4_655 ? 37 AC4 11 DG A 15 ? DG A 15 . ? 1_555 ? 38 AC4 11 DG A 21 ? DG A 21 . ? 1_555 ? 39 AC4 11 HOH F . ? HOH A 212 . ? 1_555 ? 40 AC4 11 HOH F . ? HOH A 224 . ? 1_555 ? 41 AC4 11 HOH F . ? HOH A 225 . ? 1_555 ? # _database_PDB_matrix.entry_id 4DA3 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4DA3 _atom_sites.fract_transf_matrix[1][1] 0.019489 _atom_sites.fract_transf_matrix[1][2] 0.011252 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022504 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019253 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C K N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG DG A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DT 4 4 4 DT DT A . n A 1 5 DT 5 5 5 DT DT A . n A 1 6 DA 6 6 6 DA DA A . n A 1 7 DG 7 7 7 DG DG A . n A 1 8 DG 8 8 8 DG DG A . n A 1 9 DG 9 9 9 DG DG A . n A 1 10 DT 10 10 10 DT DT A . n A 1 11 DT 11 11 11 DT DT A . n A 1 12 DA 12 12 12 DA DA A . n A 1 13 DG 13 13 13 DG DG A . n A 1 14 DG 14 14 14 DG DG A . n A 1 15 DG 15 15 15 DG DG A . n A 1 16 DT 16 16 16 DT DT A . n A 1 17 DT 17 17 17 DT DT A . n A 1 18 DA 18 18 18 DA DA A . n A 1 19 DG 19 19 19 DG DG A . n A 1 20 DG 20 20 20 DG DG A . n A 1 21 DG 21 21 21 DG DG A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K 1 101 1 K K A . C 2 K 1 102 2 K K A . D 2 K 1 103 3 K K A . E 3 0DX 1 104 23 0DX DRG A . F 4 HOH 1 201 1 HOH HOH A . F 4 HOH 2 202 2 HOH HOH A . F 4 HOH 3 203 3 HOH HOH A . F 4 HOH 4 204 4 HOH HOH A . F 4 HOH 5 205 5 HOH HOH A . F 4 HOH 6 206 6 HOH HOH A . F 4 HOH 7 207 7 HOH HOH A . F 4 HOH 8 208 8 HOH HOH A . F 4 HOH 9 209 9 HOH HOH A . F 4 HOH 10 210 10 HOH HOH A . F 4 HOH 11 211 11 HOH HOH A . F 4 HOH 12 212 12 HOH HOH A . F 4 HOH 13 213 13 HOH HOH A . F 4 HOH 14 214 14 HOH HOH A . F 4 HOH 15 215 15 HOH HOH A . F 4 HOH 16 216 16 HOH HOH A . F 4 HOH 17 217 17 HOH HOH A . F 4 HOH 18 218 18 HOH HOH A . F 4 HOH 19 219 19 HOH HOH A . F 4 HOH 20 220 20 HOH HOH A . F 4 HOH 21 221 21 HOH HOH A . F 4 HOH 22 222 22 HOH HOH A . F 4 HOH 23 223 23 HOH HOH A . F 4 HOH 24 224 24 HOH HOH A . F 4 HOH 25 225 25 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id K _pdbx_struct_special_symmetry.auth_seq_id 103 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id K _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 2 ? A DG 2 ? 1_555 67.0 ? 2 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 7 ? A DG 7 ? 1_555 70.4 ? 3 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 7 ? A DG 7 ? 1_555 93.4 ? 4 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 8 ? A DG 8 ? 1_555 128.5 ? 5 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 8 ? A DG 8 ? 1_555 75.9 ? 6 O6 ? A DG 7 ? A DG 7 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 8 ? A DG 8 ? 1_555 77.8 ? 7 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 13 ? A DG 13 ? 1_555 109.8 ? 8 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 13 ? A DG 13 ? 1_555 154.1 ? 9 O6 ? A DG 7 ? A DG 7 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 13 ? A DG 13 ? 1_555 62.7 ? 10 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 13 ? A DG 13 ? 1_555 88.7 ? 11 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 157.3 ? 12 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 114.6 ? 13 O6 ? A DG 7 ? A DG 7 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 130.3 ? 14 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 71.2 ? 15 O6 ? A DG 13 ? A DG 13 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 78.6 ? 16 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 79.0 ? 17 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 134.1 ? 18 O6 ? A DG 7 ? A DG 7 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 103.7 ? 19 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 149.0 ? 20 O6 ? A DG 13 ? A DG 13 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 65.9 ? 21 O6 ? A DG 14 ? A DG 14 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 85.9 ? 22 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 85.6 ? 23 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 69.1 ? 24 O6 ? A DG 7 ? A DG 7 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 154.7 ? 25 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 113.5 ? 26 O6 ? A DG 13 ? A DG 13 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 136.7 ? 27 O6 ? A DG 14 ? A DG 14 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 74.8 ? 28 O6 ? A DG 19 ? A DG 19 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 78.6 ? 29 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 7 ? A DG 7 ? 1_555 65.5 ? 30 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 13 ? A DG 13 ? 1_555 112.6 ? 31 O6 ? A DG 7 ? A DG 7 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 13 ? A DG 13 ? 1_555 73.0 ? 32 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 72.5 ? 33 O6 ? A DG 7 ? A DG 7 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 108.6 ? 34 O6 ? A DG 13 ? A DG 13 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 73.7 ? 35 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 3 ? A DG 3 ? 1_555 68.3 ? 36 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 8 ? A DG 8 ? 1_555 71.9 ? 37 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 8 ? A DG 8 ? 1_555 91.8 ? 38 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 127.6 ? 39 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 79.6 ? 40 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 68.8 ? 41 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 104.5 ? 42 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 155.9 ? 43 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 64.3 ? 44 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 88.4 ? 45 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 151.5 ? 46 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 135.7 ? 47 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 114.8 ? 48 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 78.4 ? 49 O6 ? A DG 14 ? A DG 14 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 60.0 ? 50 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 64.9 ? 51 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 124.3 ? 52 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 100.6 ? 53 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 155.0 ? 54 O6 ? A DG 14 ? A DG 14 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 66.8 ? 55 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 86.6 ? 56 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 91.1 ? 57 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 81.0 ? 58 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 163.0 ? 59 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 124.1 ? 60 O6 ? A DG 14 ? A DG 14 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 122.8 ? 61 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 80.4 ? 62 O6 ? A DG 20 ? A DG 20 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 71.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-01-30 2 'Structure model' 1 1 2013-04-03 3 'Structure model' 1 2 2013-04-24 4 'Structure model' 1 3 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' pdbx_struct_conn_angle 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.value' 10 4 'Structure model' '_struct_conn.pdbx_dist_value' 11 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 12 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 13 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 14 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 15 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DNA 'data collection' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.6.0117 ? 3 xia2 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" A DG 8 ? ? "O3'" A DG 8 ? ? P A DG 9 ? ? 127.33 119.70 7.63 1.20 Y 2 1 "C3'" A DT 10 ? ? "O3'" A DT 10 ? ? P A DT 11 ? ? 132.30 119.70 12.60 1.20 Y 3 1 "C3'" A DT 17 ? ? "O3'" A DT 17 ? ? P A DA 18 ? ? 129.85 119.70 10.15 1.20 Y 4 1 "C3'" A DA 18 ? ? "O3'" A DA 18 ? ? P A DG 19 ? ? 126.99 119.70 7.29 1.20 Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 0DX CAA C N N 1 0DX CAB C N N 2 0DX OAE O N N 3 0DX OAF O N N 4 0DX OAG O N N 5 0DX OAH O N N 6 0DX CAI C Y N 7 0DX CAJ C Y N 8 0DX CAK C N N 9 0DX CAL C N N 10 0DX CAM C N N 11 0DX CAN C N N 12 0DX CAO C N N 13 0DX CAP C N N 14 0DX CAQ C N N 15 0DX CAR C N N 16 0DX CAS C N N 17 0DX CAT C N N 18 0DX CAU C N N 19 0DX CAV C N N 20 0DX CAW C N N 21 0DX CAX C N N 22 0DX CAY C N N 23 0DX CAZ C N N 24 0DX CBA C N N 25 0DX CBB C N N 26 0DX CBC C N N 27 0DX CBD C N N 28 0DX CBE C N N 29 0DX CBF C N N 30 0DX CBG C N N 31 0DX CBH C N N 32 0DX CBI C N N 33 0DX CBJ C N N 34 0DX CBK C N N 35 0DX CBL C N N 36 0DX NBM N N N 37 0DX NBN N N N 38 0DX CBO C Y N 39 0DX CBP C Y N 40 0DX CBQ C N N 41 0DX CBR C N N 42 0DX CBS C N N 43 0DX CBT C N N 44 0DX CBU C Y N 45 0DX CBV C Y N 46 0DX CBW C Y N 47 0DX CBX C Y N 48 0DX CBY C Y N 49 0DX CBZ C Y N 50 0DX NCA N N N 51 0DX NCB N N N 52 0DX OCC O N N 53 0DX OCD O N N 54 0DX NCE N N N 55 0DX NCF N N N 56 0DX NCG N N N 57 0DX NCH N N N 58 0DX NCI N N N 59 0DX NCJ N N N 60 0DX HAA H N N 61 0DX HAAA H N N 62 0DX HAAB H N N 63 0DX HAB H N N 64 0DX HABA H N N 65 0DX HABB H N N 66 0DX HAI H N N 67 0DX HAJ H N N 68 0DX HAK H N N 69 0DX HAKA H N N 70 0DX HAL H N N 71 0DX HALA H N N 72 0DX HAM H N N 73 0DX HAMA H N N 74 0DX HAN H N N 75 0DX HANA H N N 76 0DX HAO H N N 77 0DX HAOA H N N 78 0DX HAP H N N 79 0DX HAPA H N N 80 0DX HAQ H N N 81 0DX HAQA H N N 82 0DX HAR H N N 83 0DX HARA H N N 84 0DX HAS H N N 85 0DX HASA H N N 86 0DX HAT H N N 87 0DX HATA H N N 88 0DX HAU H N N 89 0DX HAUA H N N 90 0DX HAV H N N 91 0DX HAVA H N N 92 0DX HAW H N N 93 0DX HAWA H N N 94 0DX HAX H N N 95 0DX HAXA H N N 96 0DX HAY H N N 97 0DX HAYA H N N 98 0DX HAZ H N N 99 0DX HAZA H N N 100 0DX HBA H N N 101 0DX HBAA H N N 102 0DX HBB H N N 103 0DX HBBA H N N 104 0DX HBC H N N 105 0DX HBCA H N N 106 0DX HBD H N N 107 0DX HBDA H N N 108 0DX HBE H N N 109 0DX HBEA H N N 110 0DX HBF H N N 111 0DX HBFA H N N 112 0DX HBG H N N 113 0DX HBGA H N N 114 0DX HBH H N N 115 0DX HBHA H N N 116 0DX HBI H N N 117 0DX HBIA H N N 118 0DX HBJ H N N 119 0DX HBJA H N N 120 0DX HBK H N N 121 0DX HBKA H N N 122 0DX HBL H N N 123 0DX HBLA H N N 124 0DX HNBM H N N 125 0DX HNBN H N N 126 DA OP3 O N N 127 DA P P N N 128 DA OP1 O N N 129 DA OP2 O N N 130 DA "O5'" O N N 131 DA "C5'" C N N 132 DA "C4'" C N R 133 DA "O4'" O N N 134 DA "C3'" C N S 135 DA "O3'" O N N 136 DA "C2'" C N N 137 DA "C1'" C N R 138 DA N9 N Y N 139 DA C8 C Y N 140 DA N7 N Y N 141 DA C5 C Y N 142 DA C6 C Y N 143 DA N6 N N N 144 DA N1 N Y N 145 DA C2 C Y N 146 DA N3 N Y N 147 DA C4 C Y N 148 DA HOP3 H N N 149 DA HOP2 H N N 150 DA "H5'" H N N 151 DA "H5''" H N N 152 DA "H4'" H N N 153 DA "H3'" H N N 154 DA "HO3'" H N N 155 DA "H2'" H N N 156 DA "H2''" H N N 157 DA "H1'" H N N 158 DA H8 H N N 159 DA H61 H N N 160 DA H62 H N N 161 DA H2 H N N 162 DG OP3 O N N 163 DG P P N N 164 DG OP1 O N N 165 DG OP2 O N N 166 DG "O5'" O N N 167 DG "C5'" C N N 168 DG "C4'" C N R 169 DG "O4'" O N N 170 DG "C3'" C N S 171 DG "O3'" O N N 172 DG "C2'" C N N 173 DG "C1'" C N R 174 DG N9 N Y N 175 DG C8 C Y N 176 DG N7 N Y N 177 DG C5 C Y N 178 DG C6 C N N 179 DG O6 O N N 180 DG N1 N N N 181 DG C2 C N N 182 DG N2 N N N 183 DG N3 N N N 184 DG C4 C Y N 185 DG HOP3 H N N 186 DG HOP2 H N N 187 DG "H5'" H N N 188 DG "H5''" H N N 189 DG "H4'" H N N 190 DG "H3'" H N N 191 DG "HO3'" H N N 192 DG "H2'" H N N 193 DG "H2''" H N N 194 DG "H1'" H N N 195 DG H8 H N N 196 DG H1 H N N 197 DG H21 H N N 198 DG H22 H N N 199 DT OP3 O N N 200 DT P P N N 201 DT OP1 O N N 202 DT OP2 O N N 203 DT "O5'" O N N 204 DT "C5'" C N N 205 DT "C4'" C N R 206 DT "O4'" O N N 207 DT "C3'" C N S 208 DT "O3'" O N N 209 DT "C2'" C N N 210 DT "C1'" C N R 211 DT N1 N N N 212 DT C2 C N N 213 DT O2 O N N 214 DT N3 N N N 215 DT C4 C N N 216 DT O4 O N N 217 DT C5 C N N 218 DT C7 C N N 219 DT C6 C N N 220 DT HOP3 H N N 221 DT HOP2 H N N 222 DT "H5'" H N N 223 DT "H5''" H N N 224 DT "H4'" H N N 225 DT "H3'" H N N 226 DT "HO3'" H N N 227 DT "H2'" H N N 228 DT "H2''" H N N 229 DT "H1'" H N N 230 DT H3 H N N 231 DT H71 H N N 232 DT H72 H N N 233 DT H73 H N N 234 DT H6 H N N 235 HOH O O N N 236 HOH H1 H N N 237 HOH H2 H N N 238 K K K N N 239 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 0DX NCA CAA sing N N 1 0DX CAA HAA sing N N 2 0DX CAA HAAA sing N N 3 0DX CAA HAAB sing N N 4 0DX CAB NCB sing N N 5 0DX CAB HAB sing N N 6 0DX CAB HABA sing N N 7 0DX CAB HABB sing N N 8 0DX OAE CBQ doub N N 9 0DX CBR OAF doub N N 10 0DX CBS OAG doub N N 11 0DX OAH CBT doub N N 12 0DX CBP CAI doub Y N 13 0DX CAI CBU sing Y N 14 0DX CAI HAI sing N N 15 0DX CBV CAJ doub Y N 16 0DX CAJ CBO sing Y N 17 0DX CAJ HAJ sing N N 18 0DX CAO CAK sing N N 19 0DX CAK CAQ sing N N 20 0DX CAK HAK sing N N 21 0DX CAK HAKA sing N N 22 0DX CAR CAL sing N N 23 0DX CAL CAP sing N N 24 0DX CAL HAL sing N N 25 0DX CAL HALA sing N N 26 0DX CBK CAM sing N N 27 0DX CAM CAS sing N N 28 0DX CAM HAM sing N N 29 0DX CAM HAMA sing N N 30 0DX CAN CAT sing N N 31 0DX CAN CBL sing N N 32 0DX CAN HAN sing N N 33 0DX CAN HANA sing N N 34 0DX NBM CAO sing N N 35 0DX CAO HAO sing N N 36 0DX CAO HAOA sing N N 37 0DX CAP NBN sing N N 38 0DX CAP HAP sing N N 39 0DX CAP HAPA sing N N 40 0DX CAQ NCE sing N N 41 0DX CAQ HAQ sing N N 42 0DX CAQ HAQA sing N N 43 0DX NCF CAR sing N N 44 0DX CAR HAR sing N N 45 0DX CAR HARA sing N N 46 0DX CAS NCG sing N N 47 0DX CAS HAS sing N N 48 0DX CAS HASA sing N N 49 0DX NCH CAT sing N N 50 0DX CAT HAT sing N N 51 0DX CAT HATA sing N N 52 0DX CBC CAU sing N N 53 0DX CAU NCA sing N N 54 0DX CAU HAU sing N N 55 0DX CAU HAUA sing N N 56 0DX CBD CAV sing N N 57 0DX NCA CAV sing N N 58 0DX CAV HAV sing N N 59 0DX CAV HAVA sing N N 60 0DX NCB CAW sing N N 61 0DX CAW CBE sing N N 62 0DX CAW HAW sing N N 63 0DX CAW HAWA sing N N 64 0DX CAX NCB sing N N 65 0DX CAX CBF sing N N 66 0DX CAX HAX sing N N 67 0DX CAX HAXA sing N N 68 0DX CBG CAY sing N N 69 0DX CAY OCC sing N N 70 0DX CAY HAY sing N N 71 0DX CAY HAYA sing N N 72 0DX CBH CAZ sing N N 73 0DX CAZ OCC sing N N 74 0DX CAZ HAZ sing N N 75 0DX CAZ HAZA sing N N 76 0DX CBA CBI sing N N 77 0DX CBA OCD sing N N 78 0DX CBA HBA sing N N 79 0DX CBA HBAA sing N N 80 0DX OCD CBB sing N N 81 0DX CBB CBJ sing N N 82 0DX CBB HBB sing N N 83 0DX CBB HBBA sing N N 84 0DX CBC NCE sing N N 85 0DX CBC HBC sing N N 86 0DX CBC HBCA sing N N 87 0DX NCE CBD sing N N 88 0DX CBD HBD sing N N 89 0DX CBD HBDA sing N N 90 0DX NCF CBE sing N N 91 0DX CBE HBE sing N N 92 0DX CBE HBEA sing N N 93 0DX CBF NCF sing N N 94 0DX CBF HBF sing N N 95 0DX CBF HBFA sing N N 96 0DX NCG CBG sing N N 97 0DX CBG HBG sing N N 98 0DX CBG HBGA sing N N 99 0DX NCG CBH sing N N 100 0DX CBH HBH sing N N 101 0DX CBH HBHA sing N N 102 0DX CBI NCH sing N N 103 0DX CBI HBI sing N N 104 0DX CBI HBIA sing N N 105 0DX NCH CBJ sing N N 106 0DX CBJ HBJ sing N N 107 0DX CBJ HBJA sing N N 108 0DX NCI CBK sing N N 109 0DX CBK HBK sing N N 110 0DX CBK HBKA sing N N 111 0DX NCJ CBL sing N N 112 0DX CBL HBL sing N N 113 0DX CBL HBLA sing N N 114 0DX CBO NBM sing N N 115 0DX NBM HNBM sing N N 116 0DX NBN CBP sing N N 117 0DX NBN HNBN sing N N 118 0DX CBW CBO doub Y N 119 0DX CBP CBX sing Y N 120 0DX CBU CBQ sing N N 121 0DX CBQ NCI sing N N 122 0DX NCJ CBR sing N N 123 0DX CBR CBV sing N N 124 0DX NCI CBS sing N N 125 0DX CBW CBS sing N N 126 0DX CBT CBX sing N N 127 0DX CBT NCJ sing N N 128 0DX CBU CBY doub Y N 129 0DX CBZ CBV sing Y N 130 0DX CBY CBW sing Y N 131 0DX CBX CBZ doub Y N 132 0DX CBZ CBY sing Y N 133 DA OP3 P sing N N 134 DA OP3 HOP3 sing N N 135 DA P OP1 doub N N 136 DA P OP2 sing N N 137 DA P "O5'" sing N N 138 DA OP2 HOP2 sing N N 139 DA "O5'" "C5'" sing N N 140 DA "C5'" "C4'" sing N N 141 DA "C5'" "H5'" sing N N 142 DA "C5'" "H5''" sing N N 143 DA "C4'" "O4'" sing N N 144 DA "C4'" "C3'" sing N N 145 DA "C4'" "H4'" sing N N 146 DA "O4'" "C1'" sing N N 147 DA "C3'" "O3'" sing N N 148 DA "C3'" "C2'" sing N N 149 DA "C3'" "H3'" sing N N 150 DA "O3'" "HO3'" sing N N 151 DA "C2'" "C1'" sing N N 152 DA "C2'" "H2'" sing N N 153 DA "C2'" "H2''" sing N N 154 DA "C1'" N9 sing N N 155 DA "C1'" "H1'" sing N N 156 DA N9 C8 sing Y N 157 DA N9 C4 sing Y N 158 DA C8 N7 doub Y N 159 DA C8 H8 sing N N 160 DA N7 C5 sing Y N 161 DA C5 C6 sing Y N 162 DA C5 C4 doub Y N 163 DA C6 N6 sing N N 164 DA C6 N1 doub Y N 165 DA N6 H61 sing N N 166 DA N6 H62 sing N N 167 DA N1 C2 sing Y N 168 DA C2 N3 doub Y N 169 DA C2 H2 sing N N 170 DA N3 C4 sing Y N 171 DG OP3 P sing N N 172 DG OP3 HOP3 sing N N 173 DG P OP1 doub N N 174 DG P OP2 sing N N 175 DG P "O5'" sing N N 176 DG OP2 HOP2 sing N N 177 DG "O5'" "C5'" sing N N 178 DG "C5'" "C4'" sing N N 179 DG "C5'" "H5'" sing N N 180 DG "C5'" "H5''" sing N N 181 DG "C4'" "O4'" sing N N 182 DG "C4'" "C3'" sing N N 183 DG "C4'" "H4'" sing N N 184 DG "O4'" "C1'" sing N N 185 DG "C3'" "O3'" sing N N 186 DG "C3'" "C2'" sing N N 187 DG "C3'" "H3'" sing N N 188 DG "O3'" "HO3'" sing N N 189 DG "C2'" "C1'" sing N N 190 DG "C2'" "H2'" sing N N 191 DG "C2'" "H2''" sing N N 192 DG "C1'" N9 sing N N 193 DG "C1'" "H1'" sing N N 194 DG N9 C8 sing Y N 195 DG N9 C4 sing Y N 196 DG C8 N7 doub Y N 197 DG C8 H8 sing N N 198 DG N7 C5 sing Y N 199 DG C5 C6 sing N N 200 DG C5 C4 doub Y N 201 DG C6 O6 doub N N 202 DG C6 N1 sing N N 203 DG N1 C2 sing N N 204 DG N1 H1 sing N N 205 DG C2 N2 sing N N 206 DG C2 N3 doub N N 207 DG N2 H21 sing N N 208 DG N2 H22 sing N N 209 DG N3 C4 sing N N 210 DT OP3 P sing N N 211 DT OP3 HOP3 sing N N 212 DT P OP1 doub N N 213 DT P OP2 sing N N 214 DT P "O5'" sing N N 215 DT OP2 HOP2 sing N N 216 DT "O5'" "C5'" sing N N 217 DT "C5'" "C4'" sing N N 218 DT "C5'" "H5'" sing N N 219 DT "C5'" "H5''" sing N N 220 DT "C4'" "O4'" sing N N 221 DT "C4'" "C3'" sing N N 222 DT "C4'" "H4'" sing N N 223 DT "O4'" "C1'" sing N N 224 DT "C3'" "O3'" sing N N 225 DT "C3'" "C2'" sing N N 226 DT "C3'" "H3'" sing N N 227 DT "O3'" "HO3'" sing N N 228 DT "C2'" "C1'" sing N N 229 DT "C2'" "H2'" sing N N 230 DT "C2'" "H2''" sing N N 231 DT "C1'" N1 sing N N 232 DT "C1'" "H1'" sing N N 233 DT N1 C2 sing N N 234 DT N1 C6 sing N N 235 DT C2 O2 doub N N 236 DT C2 N3 sing N N 237 DT N3 C4 sing N N 238 DT N3 H3 sing N N 239 DT C4 O4 doub N N 240 DT C4 C5 sing N N 241 DT C5 C7 sing N N 242 DT C5 C6 doub N N 243 DT C7 H71 sing N N 244 DT C7 H72 sing N N 245 DT C7 H73 sing N N 246 DT C6 H6 sing N N 247 HOH O H1 sing N N 248 HOH O H2 sing N N 249 # _ndb_struct_conf_na.entry_id 4DA3 _ndb_struct_conf_na.feature 'quadruple helix' # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'POTASSIUM ION' K 3 ;4,9-bis{[3-(4-methylpiperazin-1-yl)propyl]amino}-2,7-bis[3-(morpholin-4-yl)propyl]benzo[lmn][3,8]phenanthroline-1,3,6,8(2H,7H)-tetrone ; 0DX 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3SC8 _pdbx_initial_refinement_model.details 'PDB ENTRY 3SC8' #