data_4DAD # _entry.id 4DAD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4DAD pdb_00004dad 10.2210/pdb4dad/pdb RCSB RCSB070081 ? ? WWPDB D_1000070081 ? ? # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id 423113 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 4DAD _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-01-12 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title ;Crystal structure of a Putative pilus assembly-related protein (BPSS2195) from Burkholderia pseudomallei K96243 at 2.50 A resolution (PSI Community Target, Shapiro L.) ; _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 4DAD _cell.length_a 65.589 _cell.length_b 65.589 _cell.length_c 65.642 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 6 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4DAD _symmetry.Int_Tables_number 152 _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative pilus assembly-related protein' 16238.903 1 ? ? 'UNP residues 1-127' ? 2 non-polymer syn 'SULFATE ION' 96.063 3 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 2 ? ? ? ? 4 water nat water 18.015 44 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)GSDKIHHHHHHENLYFQG(MSE)INILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFDIL (MSE)IDGAALDTAELAAIEKLSRLHPGLTCLLVTTDASSQTLLDA(MSE)RAGVRDVLRWPLEPRALDDALKRAAAQCA QRD ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSDKIHHHHHHENLYFQGMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFDILMIDGAALDT AELAAIEKLSRLHPGLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQCAQRD ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 423113 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLY n 1 3 SER n 1 4 ASP n 1 5 LYS n 1 6 ILE n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 HIS n 1 12 HIS n 1 13 GLU n 1 14 ASN n 1 15 LEU n 1 16 TYR n 1 17 PHE n 1 18 GLN n 1 19 GLY n 1 20 MSE n 1 21 ILE n 1 22 ASN n 1 23 ILE n 1 24 LEU n 1 25 VAL n 1 26 ALA n 1 27 SER n 1 28 GLU n 1 29 ASP n 1 30 ALA n 1 31 SER n 1 32 ARG n 1 33 LEU n 1 34 ALA n 1 35 HIS n 1 36 LEU n 1 37 ALA n 1 38 ARG n 1 39 LEU n 1 40 VAL n 1 41 GLY n 1 42 ASP n 1 43 ALA n 1 44 GLY n 1 45 ARG n 1 46 TYR n 1 47 ARG n 1 48 VAL n 1 49 THR n 1 50 ARG n 1 51 THR n 1 52 VAL n 1 53 GLY n 1 54 ARG n 1 55 ALA n 1 56 ALA n 1 57 GLN n 1 58 ILE n 1 59 VAL n 1 60 GLN n 1 61 ARG n 1 62 THR n 1 63 ASP n 1 64 GLY n 1 65 LEU n 1 66 ASP n 1 67 ALA n 1 68 PHE n 1 69 ASP n 1 70 ILE n 1 71 LEU n 1 72 MSE n 1 73 ILE n 1 74 ASP n 1 75 GLY n 1 76 ALA n 1 77 ALA n 1 78 LEU n 1 79 ASP n 1 80 THR n 1 81 ALA n 1 82 GLU n 1 83 LEU n 1 84 ALA n 1 85 ALA n 1 86 ILE n 1 87 GLU n 1 88 LYS n 1 89 LEU n 1 90 SER n 1 91 ARG n 1 92 LEU n 1 93 HIS n 1 94 PRO n 1 95 GLY n 1 96 LEU n 1 97 THR n 1 98 CYS n 1 99 LEU n 1 100 LEU n 1 101 VAL n 1 102 THR n 1 103 THR n 1 104 ASP n 1 105 ALA n 1 106 SER n 1 107 SER n 1 108 GLN n 1 109 THR n 1 110 LEU n 1 111 LEU n 1 112 ASP n 1 113 ALA n 1 114 MSE n 1 115 ARG n 1 116 ALA n 1 117 GLY n 1 118 VAL n 1 119 ARG n 1 120 ASP n 1 121 VAL n 1 122 LEU n 1 123 ARG n 1 124 TRP n 1 125 PRO n 1 126 LEU n 1 127 GLU n 1 128 PRO n 1 129 ARG n 1 130 ALA n 1 131 LEU n 1 132 ASP n 1 133 ASP n 1 134 ALA n 1 135 LEU n 1 136 LYS n 1 137 ARG n 1 138 ALA n 1 139 ALA n 1 140 ALA n 1 141 GLN n 1 142 CYS n 1 143 ALA n 1 144 GLN n 1 145 ARG n 1 146 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene BPSS2195 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Burkholderia pseudomallei' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 28450 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain PB1 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q63I75_BURPS _struct_ref.pdbx_db_accession Q63I75 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFDILMIDGAALDTAELAAIEKLSRLHPGLTCL LVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQCAQRD ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4DAD _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 20 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 146 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q63I75 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 127 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 127 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4DAD MSE A 1 ? UNP Q63I75 ? ? 'expression tag' -18 1 1 4DAD GLY A 2 ? UNP Q63I75 ? ? 'expression tag' -17 2 1 4DAD SER A 3 ? UNP Q63I75 ? ? 'expression tag' -16 3 1 4DAD ASP A 4 ? UNP Q63I75 ? ? 'expression tag' -15 4 1 4DAD LYS A 5 ? UNP Q63I75 ? ? 'expression tag' -14 5 1 4DAD ILE A 6 ? UNP Q63I75 ? ? 'expression tag' -13 6 1 4DAD HIS A 7 ? UNP Q63I75 ? ? 'expression tag' -12 7 1 4DAD HIS A 8 ? UNP Q63I75 ? ? 'expression tag' -11 8 1 4DAD HIS A 9 ? UNP Q63I75 ? ? 'expression tag' -10 9 1 4DAD HIS A 10 ? UNP Q63I75 ? ? 'expression tag' -9 10 1 4DAD HIS A 11 ? UNP Q63I75 ? ? 'expression tag' -8 11 1 4DAD HIS A 12 ? UNP Q63I75 ? ? 'expression tag' -7 12 1 4DAD GLU A 13 ? UNP Q63I75 ? ? 'expression tag' -6 13 1 4DAD ASN A 14 ? UNP Q63I75 ? ? 'expression tag' -5 14 1 4DAD LEU A 15 ? UNP Q63I75 ? ? 'expression tag' -4 15 1 4DAD TYR A 16 ? UNP Q63I75 ? ? 'expression tag' -3 16 1 4DAD PHE A 17 ? UNP Q63I75 ? ? 'expression tag' -2 17 1 4DAD GLN A 18 ? UNP Q63I75 ? ? 'expression tag' -1 18 1 4DAD GLY A 19 ? UNP Q63I75 ? ? 'expression tag' 0 19 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 4DAD # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.51 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 50.99 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '2.00M (NH4)2SO4, 0.1M TRIS pH 8.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.details 'FLAT MIRROR (VERTICAL FOCUSING); SINGLE CRYSTAL SI(111) BENT MONOCHROMATOR (HORIZONTAL FOCUSING)' _diffrn_detector.pdbx_collection_date 2011-12-08 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SINGLE CRYSTAL SI(111) BENT' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97947 1.0 2 0.91837 1.0 3 0.97894 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_wavelength_list 0.97947,0.91837,0.97894 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 4DAD _reflns.d_resolution_high 2.50 _reflns.d_resolution_low 42.953 _reflns.number_obs 5865 _reflns.pdbx_Rmerge_I_obs 0.064 _reflns.pdbx_netI_over_sigmaI 16.220 _reflns.percent_possible_obs 98.700 _reflns.B_iso_Wilson_estimate 61.811 _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy 4.77 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.500 2.590 2700 ? 559 0.643 2.56 ? ? 4.83 ? ? 97.400 1 1 2.590 2.690 2769 ? 548 0.472 3.4 ? ? ? ? ? 99.600 2 1 2.690 2.810 2958 ? 587 0.379 4.2 ? ? ? ? ? 99.200 3 1 2.810 2.960 2790 ? 557 0.241 6.4 ? ? ? ? ? 98.800 4 1 2.960 3.150 2891 ? 614 0.152 9.5 ? ? ? ? ? 99.000 5 1 3.150 3.390 2540 ? 559 0.092 15.0 ? ? ? ? ? 99.300 6 1 3.390 3.730 2988 ? 596 0.058 21.9 ? ? ? ? ? 99.500 7 1 3.730 4.260 2826 ? 587 0.042 28.0 ? ? ? ? ? 98.800 8 1 4.260 5.350 2592 ? 591 0.036 32.4 ? ? ? ? ? 98.000 9 1 5.350 42.953 2851 ? 658 0.032 34.8 ? ? ? ? ? 97.900 10 1 # _refine.entry_id 4DAD _refine.ls_d_res_high 2.5000 _refine.ls_d_res_low 42.953 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 98.7500 _refine.ls_number_reflns_obs 5847 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 2. SULFATE (SO4) FROM CRYSTALLIZATION CONDITION AND CHLORIDE (CL) FROM THE EXPRESSION OR PURIFICATION BUFFERS ARE MODELED INTO THE STRUCTURE 3. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 4. WATERS WERE EXCLUDED FROM AUTOMATIC TLS ASSIGNMENT. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1936 _refine.ls_R_factor_R_work 0.1908 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2546 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.5700 _refine.ls_number_reflns_R_free 267 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 62.3187 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -4.8932 _refine.aniso_B[2][2] -4.8932 _refine.aniso_B[3][3] 9.7865 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9426 _refine.correlation_coeff_Fo_to_Fc_free 0.8994 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.solvent_model_details ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 152.490 _refine.B_iso_min 30.170 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 4DAD _refine_analyze.Luzzati_coordinate_error_obs 0.358 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1011 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 17 _refine_hist.number_atoms_solvent 44 _refine_hist.number_atoms_total 1072 _refine_hist.d_res_high 2.5000 _refine_hist.d_res_low 42.953 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id t_dihedral_angle_d 504 ? ? 2.000 SINUSOIDAL 'X-RAY DIFFRACTION' t_trig_c_planes 27 ? ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_gen_planes 158 ? ? 5.000 HARMONIC 'X-RAY DIFFRACTION' t_it 1049 ? ? 20.000 HARMONIC 'X-RAY DIFFRACTION' t_nbd ? ? ? ? ? 'X-RAY DIFFRACTION' t_improper_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_pseud_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_chiral_improper_torsion 142 ? ? 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_sum_occupancies ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_distance ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_ideal_dist_contact 1149 ? ? 4.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_bond_d 1049 0.010 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_angle_deg 1427 1.070 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_omega_torsion ? 2.870 ? ? ? 'X-RAY DIFFRACTION' t_other_torsion ? 3.000 ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 2.5000 _refine_ls_shell.d_res_low 2.7900 _refine_ls_shell.pdbx_total_number_of_bins_used 5 _refine_ls_shell.percent_reflns_obs 98.7500 _refine_ls_shell.number_reflns_R_work 1522 _refine_ls_shell.R_factor_all 0.2187 _refine_ls_shell.R_factor_R_work 0.2145 _refine_ls_shell.R_factor_R_free 0.2947 _refine_ls_shell.percent_reflns_R_free 5.2900 _refine_ls_shell.number_reflns_R_free 85 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1607 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4DAD _struct.title ;Crystal structure of a Putative pilus assembly-related protein (BPSS2195) from Burkholderia pseudomallei K96243 at 2.50 A resolution (PSI Community Target, Shapiro L.) ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;Response regulator receiver domain, CheY-related protein, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, SIGNALING PROTEIN, SIGNAL TRANSDUCTION ; _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN, SIGNAL TRANSDUCTION' _struct_keywords.entry_id 4DAD # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 4 ? # _struct_biol.id 1 _struct_biol.details 'CRYSTAL PACKING SUPPORTS THE ASSIGNMENT OF A DIMER AS A BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PHE A 17 ? MSE A 20 ? PHE A -2 MSE A 1 5 ? 4 HELX_P HELX_P2 2 ASP A 29 ? GLY A 44 ? ASP A 10 GLY A 25 1 ? 16 HELX_P HELX_P3 3 ARG A 54 ? VAL A 59 ? ARG A 35 VAL A 40 1 ? 6 HELX_P HELX_P4 4 ARG A 61 ? ASP A 66 ? ARG A 42 ASP A 47 1 ? 6 HELX_P HELX_P5 5 ASP A 79 ? HIS A 93 ? ASP A 60 HIS A 74 1 ? 15 HELX_P HELX_P6 6 SER A 106 ? ARG A 115 ? SER A 87 ARG A 96 1 ? 10 HELX_P HELX_P7 7 GLU A 127 ? GLN A 141 ? GLU A 108 GLN A 122 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLY 19 C ? ? ? 1_555 A MSE 20 N ? ? A GLY 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale2 covale both ? A MSE 20 C ? ? ? 1_555 A ILE 21 N ? ? A MSE 1 A ILE 2 1_555 ? ? ? ? ? ? ? 1.358 ? ? covale3 covale both ? A LEU 71 C ? ? ? 1_555 A MSE 72 N ? ? A LEU 52 A MSE 53 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale4 covale both ? A MSE 72 C ? ? ? 1_555 A ILE 73 N ? ? A MSE 53 A ILE 54 1_555 ? ? ? ? ? ? ? 1.347 ? ? covale5 covale both ? A ALA 113 C ? ? ? 1_555 A MSE 114 N ? ? A ALA 94 A MSE 95 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale6 covale both ? A MSE 114 C ? ? ? 1_555 A ARG 115 N ? ? A MSE 95 A ARG 96 1_555 ? ? ? ? ? ? ? 1.343 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id TRP _struct_mon_prot_cis.label_seq_id 124 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id TRP _struct_mon_prot_cis.auth_seq_id 105 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 125 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 106 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 2.52 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 47 ? THR A 51 ? ARG A 28 THR A 32 A 2 ASN A 22 ? ALA A 26 ? ASN A 3 ALA A 7 A 3 ILE A 70 ? ASP A 74 ? ILE A 51 ASP A 55 A 4 THR A 97 ? THR A 102 ? THR A 78 THR A 83 A 5 VAL A 118 ? ARG A 123 ? VAL A 99 ARG A 104 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O THR A 49 ? O THR A 30 N VAL A 25 ? N VAL A 6 A 2 3 N LEU A 24 ? N LEU A 5 O ILE A 70 ? O ILE A 51 A 3 4 N ILE A 73 ? N ILE A 54 O LEU A 99 ? O LEU A 80 A 4 5 N LEU A 100 ? N LEU A 81 O LEU A 122 ? O LEU A 103 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 201 ? 5 'BINDING SITE FOR RESIDUE SO4 A 201' AC2 Software A SO4 202 ? 4 'BINDING SITE FOR RESIDUE SO4 A 202' AC3 Software A SO4 203 ? 5 'BINDING SITE FOR RESIDUE SO4 A 203' AC4 Software A CL 204 ? 1 'BINDING SITE FOR RESIDUE CL A 204' AC5 Software A CL 205 ? 2 'BINDING SITE FOR RESIDUE CL A 205' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ASN A 22 ? ASN A 3 . ? 2_665 ? 2 AC1 5 GLN A 57 ? GLN A 38 . ? 1_555 ? 3 AC1 5 GLN A 60 ? GLN A 41 . ? 1_555 ? 4 AC1 5 ARG A 61 ? ARG A 42 . ? 1_555 ? 5 AC1 5 ARG A 145 ? ARG A 126 . ? 2_665 ? 6 AC2 4 ASN A 14 ? ASN A -5 . ? 2_665 ? 7 AC2 4 ARG A 50 ? ARG A 31 . ? 1_555 ? 8 AC2 4 LYS A 88 ? LYS A 69 . ? 6_665 ? 9 AC2 4 ARG A 91 ? ARG A 72 . ? 6_665 ? 10 AC3 5 ARG A 115 ? ARG A 96 . ? 1_555 ? 11 AC3 5 ALA A 130 ? ALA A 111 . ? 4_555 ? 12 AC3 5 HOH G . ? HOH A 308 . ? 4_555 ? 13 AC3 5 HOH G . ? HOH A 320 . ? 1_555 ? 14 AC3 5 HOH G . ? HOH A 332 . ? 4_555 ? 15 AC4 1 VAL A 52 ? VAL A 33 . ? 1_555 ? 16 AC5 2 ARG A 61 ? ARG A 42 . ? 1_555 ? 17 AC5 2 ASP A 63 ? ASP A 44 . ? 1_555 ? # _atom_sites.entry_id 4DAD _atom_sites.fract_transf_matrix[1][1] 0.015246 _atom_sites.fract_transf_matrix[1][2] 0.008803 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017605 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015234 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 -18 ? ? ? A . n A 1 2 GLY 2 -17 ? ? ? A . n A 1 3 SER 3 -16 ? ? ? A . n A 1 4 ASP 4 -15 ? ? ? A . n A 1 5 LYS 5 -14 ? ? ? A . n A 1 6 ILE 6 -13 ? ? ? A . n A 1 7 HIS 7 -12 ? ? ? A . n A 1 8 HIS 8 -11 ? ? ? A . n A 1 9 HIS 9 -10 ? ? ? A . n A 1 10 HIS 10 -9 ? ? ? A . n A 1 11 HIS 11 -8 ? ? ? A . n A 1 12 HIS 12 -7 ? ? ? A . n A 1 13 GLU 13 -6 -6 GLU GLU A . n A 1 14 ASN 14 -5 -5 ASN ASN A . n A 1 15 LEU 15 -4 -4 LEU LEU A . n A 1 16 TYR 16 -3 -3 TYR TYR A . n A 1 17 PHE 17 -2 -2 PHE PHE A . n A 1 18 GLN 18 -1 -1 GLN GLN A . n A 1 19 GLY 19 0 0 GLY GLY A . n A 1 20 MSE 20 1 1 MSE MSE A . n A 1 21 ILE 21 2 2 ILE ILE A . n A 1 22 ASN 22 3 3 ASN ASN A . n A 1 23 ILE 23 4 4 ILE ILE A . n A 1 24 LEU 24 5 5 LEU LEU A . n A 1 25 VAL 25 6 6 VAL VAL A . n A 1 26 ALA 26 7 7 ALA ALA A . n A 1 27 SER 27 8 8 SER SER A . n A 1 28 GLU 28 9 9 GLU GLU A . n A 1 29 ASP 29 10 10 ASP ASP A . n A 1 30 ALA 30 11 11 ALA ALA A . n A 1 31 SER 31 12 12 SER SER A . n A 1 32 ARG 32 13 13 ARG ARG A . n A 1 33 LEU 33 14 14 LEU LEU A . n A 1 34 ALA 34 15 15 ALA ALA A . n A 1 35 HIS 35 16 16 HIS HIS A . n A 1 36 LEU 36 17 17 LEU LEU A . n A 1 37 ALA 37 18 18 ALA ALA A . n A 1 38 ARG 38 19 19 ARG ARG A . n A 1 39 LEU 39 20 20 LEU LEU A . n A 1 40 VAL 40 21 21 VAL VAL A . n A 1 41 GLY 41 22 22 GLY GLY A . n A 1 42 ASP 42 23 23 ASP ASP A . n A 1 43 ALA 43 24 24 ALA ALA A . n A 1 44 GLY 44 25 25 GLY GLY A . n A 1 45 ARG 45 26 26 ARG ARG A . n A 1 46 TYR 46 27 27 TYR TYR A . n A 1 47 ARG 47 28 28 ARG ARG A . n A 1 48 VAL 48 29 29 VAL VAL A . n A 1 49 THR 49 30 30 THR THR A . n A 1 50 ARG 50 31 31 ARG ARG A . n A 1 51 THR 51 32 32 THR THR A . n A 1 52 VAL 52 33 33 VAL VAL A . n A 1 53 GLY 53 34 34 GLY GLY A . n A 1 54 ARG 54 35 35 ARG ARG A . n A 1 55 ALA 55 36 36 ALA ALA A . n A 1 56 ALA 56 37 37 ALA ALA A . n A 1 57 GLN 57 38 38 GLN GLN A . n A 1 58 ILE 58 39 39 ILE ILE A . n A 1 59 VAL 59 40 40 VAL VAL A . n A 1 60 GLN 60 41 41 GLN GLN A . n A 1 61 ARG 61 42 42 ARG ARG A . n A 1 62 THR 62 43 43 THR THR A . n A 1 63 ASP 63 44 44 ASP ASP A . n A 1 64 GLY 64 45 45 GLY GLY A . n A 1 65 LEU 65 46 46 LEU LEU A . n A 1 66 ASP 66 47 47 ASP ASP A . n A 1 67 ALA 67 48 48 ALA ALA A . n A 1 68 PHE 68 49 49 PHE PHE A . n A 1 69 ASP 69 50 50 ASP ASP A . n A 1 70 ILE 70 51 51 ILE ILE A . n A 1 71 LEU 71 52 52 LEU LEU A . n A 1 72 MSE 72 53 53 MSE MSE A . n A 1 73 ILE 73 54 54 ILE ILE A . n A 1 74 ASP 74 55 55 ASP ASP A . n A 1 75 GLY 75 56 56 GLY GLY A . n A 1 76 ALA 76 57 57 ALA ALA A . n A 1 77 ALA 77 58 58 ALA ALA A . n A 1 78 LEU 78 59 59 LEU LEU A . n A 1 79 ASP 79 60 60 ASP ASP A . n A 1 80 THR 80 61 61 THR THR A . n A 1 81 ALA 81 62 62 ALA ALA A . n A 1 82 GLU 82 63 63 GLU GLU A . n A 1 83 LEU 83 64 64 LEU LEU A . n A 1 84 ALA 84 65 65 ALA ALA A . n A 1 85 ALA 85 66 66 ALA ALA A . n A 1 86 ILE 86 67 67 ILE ILE A . n A 1 87 GLU 87 68 68 GLU GLU A . n A 1 88 LYS 88 69 69 LYS LYS A . n A 1 89 LEU 89 70 70 LEU LEU A . n A 1 90 SER 90 71 71 SER SER A . n A 1 91 ARG 91 72 72 ARG ARG A . n A 1 92 LEU 92 73 73 LEU LEU A . n A 1 93 HIS 93 74 74 HIS HIS A . n A 1 94 PRO 94 75 75 PRO PRO A . n A 1 95 GLY 95 76 76 GLY GLY A . n A 1 96 LEU 96 77 77 LEU LEU A . n A 1 97 THR 97 78 78 THR THR A . n A 1 98 CYS 98 79 79 CYS CYS A . n A 1 99 LEU 99 80 80 LEU LEU A . n A 1 100 LEU 100 81 81 LEU LEU A . n A 1 101 VAL 101 82 82 VAL VAL A . n A 1 102 THR 102 83 83 THR THR A . n A 1 103 THR 103 84 84 THR THR A . n A 1 104 ASP 104 85 85 ASP ASP A . n A 1 105 ALA 105 86 86 ALA ALA A . n A 1 106 SER 106 87 87 SER SER A . n A 1 107 SER 107 88 88 SER SER A . n A 1 108 GLN 108 89 89 GLN GLN A . n A 1 109 THR 109 90 90 THR THR A . n A 1 110 LEU 110 91 91 LEU LEU A . n A 1 111 LEU 111 92 92 LEU LEU A . n A 1 112 ASP 112 93 93 ASP ASP A . n A 1 113 ALA 113 94 94 ALA ALA A . n A 1 114 MSE 114 95 95 MSE MSE A . n A 1 115 ARG 115 96 96 ARG ARG A . n A 1 116 ALA 116 97 97 ALA ALA A . n A 1 117 GLY 117 98 98 GLY GLY A . n A 1 118 VAL 118 99 99 VAL VAL A . n A 1 119 ARG 119 100 100 ARG ARG A . n A 1 120 ASP 120 101 101 ASP ASP A . n A 1 121 VAL 121 102 102 VAL VAL A . n A 1 122 LEU 122 103 103 LEU LEU A . n A 1 123 ARG 123 104 104 ARG ARG A . n A 1 124 TRP 124 105 105 TRP TRP A . n A 1 125 PRO 125 106 106 PRO PRO A . n A 1 126 LEU 126 107 107 LEU LEU A . n A 1 127 GLU 127 108 108 GLU GLU A . n A 1 128 PRO 128 109 109 PRO PRO A . n A 1 129 ARG 129 110 110 ARG ARG A . n A 1 130 ALA 130 111 111 ALA ALA A . n A 1 131 LEU 131 112 112 LEU LEU A . n A 1 132 ASP 132 113 113 ASP ASP A . n A 1 133 ASP 133 114 114 ASP ASP A . n A 1 134 ALA 134 115 115 ALA ALA A . n A 1 135 LEU 135 116 116 LEU LEU A . n A 1 136 LYS 136 117 117 LYS LYS A . n A 1 137 ARG 137 118 118 ARG ARG A . n A 1 138 ALA 138 119 119 ALA ALA A . n A 1 139 ALA 139 120 120 ALA ALA A . n A 1 140 ALA 140 121 121 ALA ALA A . n A 1 141 GLN 141 122 122 GLN GLN A . n A 1 142 CYS 142 123 123 CYS CYS A . n A 1 143 ALA 143 124 124 ALA ALA A . n A 1 144 GLN 144 125 125 GLN GLN A . n A 1 145 ARG 145 126 126 ARG ARG A . n A 1 146 ASP 146 127 127 ASP ASP A . n # _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 201 403 SO4 SO4 A . C 2 SO4 1 202 404 SO4 SO4 A . D 2 SO4 1 203 405 SO4 SO4 A . E 3 CL 1 204 406 CL CL A . F 3 CL 1 205 407 CL CL A . G 4 HOH 1 301 408 HOH HOH A . G 4 HOH 2 302 409 HOH HOH A . G 4 HOH 3 303 410 HOH HOH A . G 4 HOH 4 304 411 HOH HOH A . G 4 HOH 5 305 412 HOH HOH A . G 4 HOH 6 306 413 HOH HOH A . G 4 HOH 7 307 414 HOH HOH A . G 4 HOH 8 308 415 HOH HOH A . G 4 HOH 9 309 416 HOH HOH A . G 4 HOH 10 310 417 HOH HOH A . G 4 HOH 11 311 418 HOH HOH A . G 4 HOH 12 312 419 HOH HOH A . G 4 HOH 13 313 420 HOH HOH A . G 4 HOH 14 314 421 HOH HOH A . G 4 HOH 15 315 422 HOH HOH A . G 4 HOH 16 316 423 HOH HOH A . G 4 HOH 17 317 424 HOH HOH A . G 4 HOH 18 318 425 HOH HOH A . G 4 HOH 19 319 426 HOH HOH A . G 4 HOH 20 320 427 HOH HOH A . G 4 HOH 21 321 428 HOH HOH A . G 4 HOH 22 322 429 HOH HOH A . G 4 HOH 23 323 430 HOH HOH A . G 4 HOH 24 324 431 HOH HOH A . G 4 HOH 25 325 432 HOH HOH A . G 4 HOH 26 326 433 HOH HOH A . G 4 HOH 27 327 434 HOH HOH A . G 4 HOH 28 328 435 HOH HOH A . G 4 HOH 29 329 436 HOH HOH A . G 4 HOH 30 330 437 HOH HOH A . G 4 HOH 31 331 438 HOH HOH A . G 4 HOH 32 332 439 HOH HOH A . G 4 HOH 33 333 440 HOH HOH A . G 4 HOH 34 334 441 HOH HOH A . G 4 HOH 35 335 442 HOH HOH A . G 4 HOH 36 336 443 HOH HOH A . G 4 HOH 37 337 444 HOH HOH A . G 4 HOH 38 338 445 HOH HOH A . G 4 HOH 39 339 446 HOH HOH A . G 4 HOH 40 340 447 HOH HOH A . G 4 HOH 41 341 448 HOH HOH A . G 4 HOH 42 342 449 HOH HOH A . G 4 HOH 43 343 450 HOH HOH A . G 4 HOH 44 344 451 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 20 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 72 A MSE 53 ? MET SELENOMETHIONINE 3 A MSE 114 A MSE 95 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3260 ? 1 MORE -101 ? 1 'SSA (A^2)' 13890 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_555 y,x,-z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-01-25 2 'Structure model' 1 1 2012-03-07 3 'Structure model' 1 2 2012-03-21 4 'Structure model' 1 3 2013-04-17 5 'Structure model' 1 4 2017-11-15 6 'Structure model' 1 5 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Structure summary' 5 5 'Structure model' 'Refinement description' 6 6 'Structure model' 'Database references' 7 6 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' software 2 6 'Structure model' database_2 3 6 'Structure model' struct_conn 4 6 'Structure model' struct_ref_seq_dif 5 6 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 6 'Structure model' '_database_2.pdbx_DOI' 2 6 'Structure model' '_database_2.pdbx_database_accession' 3 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 6 'Structure model' '_struct_ref_seq_dif.details' 5 6 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 6 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 6 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 11.5045 _pdbx_refine_tls.origin_y 43.1199 _pdbx_refine_tls.origin_z 3.2493 _pdbx_refine_tls.T[1][1] -0.0563 _pdbx_refine_tls.T[2][2] -0.1731 _pdbx_refine_tls.T[3][3] -0.0779 _pdbx_refine_tls.T[1][2] -0.0084 _pdbx_refine_tls.T[1][3] -0.0131 _pdbx_refine_tls.T[2][3] 0.0446 _pdbx_refine_tls.L[1][1] 4.7251 _pdbx_refine_tls.L[2][2] 2.6563 _pdbx_refine_tls.L[3][3] 3.0294 _pdbx_refine_tls.L[1][2] -2.1691 _pdbx_refine_tls.L[1][3] -1.9079 _pdbx_refine_tls.L[2][3] 2.0738 _pdbx_refine_tls.S[1][1] 0.0067 _pdbx_refine_tls.S[2][2] 0.0941 _pdbx_refine_tls.S[3][3] -0.1008 _pdbx_refine_tls.S[1][2] -0.0833 _pdbx_refine_tls.S[1][3] 0.4477 _pdbx_refine_tls.S[2][3] -0.3756 _pdbx_refine_tls.S[2][1] -0.1050 _pdbx_refine_tls.S[3][1] -0.1712 _pdbx_refine_tls.S[3][2] 0.1661 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id -6 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 127 _pdbx_refine_tls_group.selection_details ? _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.selection ? # _phasing.method MAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 4 SHARP . ? package 'Eric de La Fortelle' sharp-develop@globalphasing.com phasing http://www.globalphasing.com/sharp/ ? ? 5 XSCALE 'December 29, 2011' ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 6 BUSTER-TNT 2.10.0 ? program 'Gerard Bricogne' buster-develop@GlobalPhasing.com refinement http://www.globalphasing.com/buster/ ? ? 7 XDS . ? ? ? ? 'data reduction' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? 9 BUSTER 2.10.0 ? ? ? ? refinement ? ? ? # _pdbx_entry_details.entry_id 4DAD _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT WAS EXPRESSED WITH AN N-TERMINAL PURIFICATION TAG MGSDKIHHHHHHENLYFQG FOLLOWED BY RESIDUES 1-127 OF THE FULL LENGTH PROTEIN. ; _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ARG _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 42 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -104.36 _pdbx_validate_torsion.psi 61.16 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU -6 ? CG ? A GLU 13 CG 2 1 Y 1 A GLU -6 ? CD ? A GLU 13 CD 3 1 Y 1 A GLU -6 ? OE1 ? A GLU 13 OE1 4 1 Y 1 A GLU -6 ? OE2 ? A GLU 13 OE2 5 1 Y 1 A ARG 104 ? CG ? A ARG 123 CG 6 1 Y 1 A ARG 104 ? CD ? A ARG 123 CD 7 1 Y 1 A ARG 104 ? NE ? A ARG 123 NE 8 1 Y 1 A ARG 104 ? CZ ? A ARG 123 CZ 9 1 Y 1 A ARG 104 ? NH1 ? A ARG 123 NH1 10 1 Y 1 A ARG 104 ? NH2 ? A ARG 123 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE -18 ? A MSE 1 2 1 Y 1 A GLY -17 ? A GLY 2 3 1 Y 1 A SER -16 ? A SER 3 4 1 Y 1 A ASP -15 ? A ASP 4 5 1 Y 1 A LYS -14 ? A LYS 5 6 1 Y 1 A ILE -13 ? A ILE 6 7 1 Y 1 A HIS -12 ? A HIS 7 8 1 Y 1 A HIS -11 ? A HIS 8 9 1 Y 1 A HIS -10 ? A HIS 9 10 1 Y 1 A HIS -9 ? A HIS 10 11 1 Y 1 A HIS -8 ? A HIS 11 12 1 Y 1 A HIS -7 ? A HIS 12 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 'CHLORIDE ION' CL 4 water HOH #