data_4DEN # _entry.id 4DEN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4DEN pdb_00004den 10.2210/pdb4den/pdb RCSB RCSB070233 ? ? WWPDB D_1000070233 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3A07 _pdbx_database_related.details 'Apo form of the protein, actinohivin' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4DEN _pdbx_database_status.recvd_initial_deposition_date 2012-01-20 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hoque, M.M.' 1 'Suzuki, K.' 2 'Tsunoda, M.' 3 'Jiang, J.' 4 'Zhang, F.' 5 'Takahashi, A.' 6 'Naomi, O.' 7 'Zhang, X.' 8 'Sekiguchi, T.' 9 'Tanaka, H.' 10 'Omura, S.' 11 'Takenaka, A.' 12 # _citation.id primary _citation.title ;Structural insights into the specific anti-HIV property of actinohivin: structure of its complex with the alpha(1–2)mannobiose moiety of gp120 ; _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_volume 68 _citation.page_first 1671 _citation.page_last 1679 _citation.year 2012 _citation.journal_id_ASTM ABCRE6 _citation.country DK _citation.journal_id_ISSN 0907-4449 _citation.journal_id_CSD 0766 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23151632 _citation.pdbx_database_id_DOI 10.1107/S0907444912040498 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hoque, M.M.' 1 ? primary 'Suzuki, K.' 2 ? primary 'Tsunoda, M.' 3 ? primary 'Jiang, J.' 4 ? primary 'Zhang, F.' 5 ? primary 'Takahashi, A.' 6 ? primary 'Ohbayashi, N.' 7 ? primary 'Zhang, X.' 8 ? primary 'Tanaka, H.' 9 ? primary 'Omura, S.' 10 ? primary 'Takenaka, A.' 11 ? # _cell.entry_id 4DEN _cell.length_a 56.217 _cell.length_b 56.217 _cell.length_c 56.217 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4DEN _symmetry.space_group_name_H-M 'P 21 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat Actinohivin 12532.492 1 ? ? ? ? 2 branched man 'alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose' 342.297 3 ? ? ? ? 3 non-polymer syn 'POTASSIUM ION' 39.098 3 ? ? ? ? 4 water nat water 18.015 69 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name 2alpha-alpha-mannobiose # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;ASVTIRNAQTGRLLDSNYNGNVYTLPANGGNYQRWTGPGDGTVRNAQTGRCLDSNYDGAVYTLPCNGGSYQKWLFYSNGY IQNVETGRVLDSNYNGNVYTLPANGGNYQKWYTG ; _entity_poly.pdbx_seq_one_letter_code_can ;ASVTIRNAQTGRLLDSNYNGNVYTLPANGGNYQRWTGPGDGTVRNAQTGRCLDSNYDGAVYTLPCNGGSYQKWLFYSNGY IQNVETGRVLDSNYNGNVYTLPANGGNYQKWYTG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 SER n 1 3 VAL n 1 4 THR n 1 5 ILE n 1 6 ARG n 1 7 ASN n 1 8 ALA n 1 9 GLN n 1 10 THR n 1 11 GLY n 1 12 ARG n 1 13 LEU n 1 14 LEU n 1 15 ASP n 1 16 SER n 1 17 ASN n 1 18 TYR n 1 19 ASN n 1 20 GLY n 1 21 ASN n 1 22 VAL n 1 23 TYR n 1 24 THR n 1 25 LEU n 1 26 PRO n 1 27 ALA n 1 28 ASN n 1 29 GLY n 1 30 GLY n 1 31 ASN n 1 32 TYR n 1 33 GLN n 1 34 ARG n 1 35 TRP n 1 36 THR n 1 37 GLY n 1 38 PRO n 1 39 GLY n 1 40 ASP n 1 41 GLY n 1 42 THR n 1 43 VAL n 1 44 ARG n 1 45 ASN n 1 46 ALA n 1 47 GLN n 1 48 THR n 1 49 GLY n 1 50 ARG n 1 51 CYS n 1 52 LEU n 1 53 ASP n 1 54 SER n 1 55 ASN n 1 56 TYR n 1 57 ASP n 1 58 GLY n 1 59 ALA n 1 60 VAL n 1 61 TYR n 1 62 THR n 1 63 LEU n 1 64 PRO n 1 65 CYS n 1 66 ASN n 1 67 GLY n 1 68 GLY n 1 69 SER n 1 70 TYR n 1 71 GLN n 1 72 LYS n 1 73 TRP n 1 74 LEU n 1 75 PHE n 1 76 TYR n 1 77 SER n 1 78 ASN n 1 79 GLY n 1 80 TYR n 1 81 ILE n 1 82 GLN n 1 83 ASN n 1 84 VAL n 1 85 GLU n 1 86 THR n 1 87 GLY n 1 88 ARG n 1 89 VAL n 1 90 LEU n 1 91 ASP n 1 92 SER n 1 93 ASN n 1 94 TYR n 1 95 ASN n 1 96 GLY n 1 97 ASN n 1 98 VAL n 1 99 TYR n 1 100 THR n 1 101 LEU n 1 102 PRO n 1 103 ALA n 1 104 ASN n 1 105 GLY n 1 106 GLY n 1 107 ASN n 1 108 TYR n 1 109 GLN n 1 110 LYS n 1 111 TRP n 1 112 TYR n 1 113 THR n 1 114 GLY n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific Actinomycete _entity_src_nat.pdbx_ncbi_taxonomy_id 237531 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain K97-0003 _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code AHV_ACTSK _struct_ref.pdbx_db_accession Q9KWN0 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ASVTIRNAQTGRLLDSNYNGNVYTLPANGGNYQRWTGPGDGTVRNAQTGRCLDSNYDGAVYTLPCNGGSYQKWLFYSNGY IQNVETGRVLDSNYNGNVYTLPANGGNYQKWYTG ; _struct_ref.pdbx_align_begin 47 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4DEN _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 114 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9KWN0 _struct_ref_seq.db_align_beg 47 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 160 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 47 _struct_ref_seq.pdbx_auth_seq_align_end 160 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MAN 'D-saccharide, alpha linking' . alpha-D-mannopyranose 'alpha-D-mannose; D-mannose; mannose' 'C6 H12 O6' 180.156 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4DEN _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.2 _exptl_crystal_grow.pdbx_details '20% w/v PEG 1000, 0.2M NaCl, 0.1M Na/K phosphate buffer pH 6.2, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2009-02-21 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.00 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PHOTON FACTORY BEAMLINE AR-NW12A' _diffrn_source.pdbx_synchrotron_site 'Photon Factory' _diffrn_source.pdbx_synchrotron_beamline AR-NW12A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.00 # _reflns.entry_id 4DEN _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 39.75 _reflns.d_resolution_high 1.60 _reflns.number_obs 8067 _reflns.number_all ? _reflns.percent_possible_obs 99.5 _reflns.pdbx_Rmerge_I_obs 0.060 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 20.1 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 19.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.60 _reflns_shell.d_res_low 1.63 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.570 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 7.8 _reflns_shell.pdbx_redundancy 19.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 402 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4DEN _refine.ls_number_reflns_obs 7647 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 39.75 _refine.ls_d_res_high 1.60 _refine.ls_percent_reflns_obs 99.16 _refine.ls_R_factor_obs 0.14721 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.14473 _refine.ls_R_factor_R_free 0.20167 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.6 _refine.ls_number_reflns_R_free 370 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.972 _refine.correlation_coeff_Fo_to_Fc_free 0.928 _refine.B_iso_mean 16.958 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details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refine.pdbx_starting_model 'PDB ENTRY 3A07' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.126 _refine.pdbx_overall_ESU_R_Free 0.120 _refine.overall_SU_ML 0.073 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 1.914 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 875 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 72 _refine_hist.number_atoms_solvent 69 _refine_hist.number_atoms_total 1016 _refine_hist.d_res_high 1.60 _refine_hist.d_res_low 39.75 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.021 0.021 ? 970 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2.197 2.003 ? 1332 ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 6.728 5.000 ? 111 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 33.199 24.400 ? 50 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 15.246 15.000 ? 121 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 10.212 15.000 ? 6 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.153 0.200 ? 152 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.011 0.021 ? 739 ? 'X-RAY DIFFRACTION' r_mcbond_it 1.176 1.500 ? 547 ? 'X-RAY DIFFRACTION' r_mcangle_it 1.809 2.000 ? 870 ? 'X-RAY DIFFRACTION' r_scbond_it 2.922 3.000 ? 423 ? 'X-RAY DIFFRACTION' r_scangle_it 3.779 4.500 ? 462 ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.598 _refine_ls_shell.d_res_low 1.640 _refine_ls_shell.number_reflns_R_work 554 _refine_ls_shell.R_factor_R_work 0.197 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.290 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 25 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 554 _refine_ls_shell.redundancy_reflns_obs ? # _struct.entry_id 4DEN _struct.title ;Structural insightsinto potent, specific anti-HIV property of actinohivin; Crystal structure of actinohivin in complex with alpha(1-2) mannobiose moiety of high-mannose type glycan of gp120 ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4DEN _struct_keywords.pdbx_keywords 'ANTIVIRAL PROTEIN' _struct_keywords.text 'anti-HIV lectin, molecular recognition, high-mannose type glycan, ANTIVIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 30 ? GLN A 33 ? GLY A 76 GLN A 79 5 ? 4 HELX_P HELX_P2 2 GLY A 68 ? GLN A 71 ? GLY A 114 GLN A 117 5 ? 4 HELX_P HELX_P3 3 GLY A 106 ? GLN A 109 ? GLY A 152 GLN A 155 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 51 SG ? ? ? 1_555 A CYS 65 SG ? ? A CYS 97 A CYS 111 1_555 ? ? ? ? ? ? ? 2.037 ? ? covale1 covale both ? B MAN . O2 ? ? ? 1_555 B MAN . C1 ? ? B MAN 1 B MAN 2 1_555 ? ? ? ? ? ? ? 1.448 sing ? covale2 covale both ? C MAN . O2 ? ? ? 1_555 C MAN . C1 ? ? C MAN 1 C MAN 2 1_555 ? ? ? ? ? ? ? 1.428 sing ? covale3 covale both ? D MAN . O2 ? ? ? 1_555 D MAN . C1 ? ? D MAN 1 D MAN 2 1_555 ? ? ? ? ? ? ? 1.455 sing ? metalc1 metalc ? ? A ASN 104 O ? ? ? 1_555 E K . K ? ? A ASN 150 A K 204 1_555 ? ? ? ? ? ? ? 2.646 ? ? metalc2 metalc ? ? E K . K ? ? ? 1_555 D MAN . O2 ? ? A K 204 D MAN 2 1_555 ? ? ? ? ? ? ? 2.811 ? ? metalc3 metalc ? ? F K . K ? ? ? 1_555 D MAN . O4 ? ? A K 205 D MAN 2 1_555 ? ? ? ? ? ? ? 2.950 ? ? metalc4 metalc ? ? G K . K ? ? ? 1_555 C MAN . O6 ? ? A K 206 C MAN 1 1_555 ? ? ? ? ? ? ? 2.853 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? C ? 2 ? D ? 2 ? E ? 2 ? F ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel E 1 2 ? anti-parallel F 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 5 ? ASN A 7 ? ILE A 51 ASN A 53 A 2 TRP A 111 ? THR A 113 ? TRP A 157 THR A 159 B 1 LEU A 13 ? SER A 16 ? LEU A 59 SER A 62 B 2 VAL A 22 ? LEU A 25 ? VAL A 68 LEU A 71 C 1 TRP A 35 ? THR A 36 ? TRP A 81 THR A 82 C 2 ARG A 44 ? ASN A 45 ? ARG A 90 ASN A 91 D 1 CYS A 51 ? SER A 54 ? CYS A 97 SER A 100 D 2 VAL A 60 ? LEU A 63 ? VAL A 106 LEU A 109 E 1 TRP A 73 ? PHE A 75 ? TRP A 119 PHE A 121 E 2 ILE A 81 ? ASN A 83 ? ILE A 127 ASN A 129 F 1 VAL A 89 ? SER A 92 ? VAL A 135 SER A 138 F 2 VAL A 98 ? LEU A 101 ? VAL A 144 LEU A 147 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ARG A 6 ? N ARG A 52 O TYR A 112 ? O TYR A 158 B 1 2 N LEU A 13 ? N LEU A 59 O LEU A 25 ? O LEU A 71 C 1 2 N THR A 36 ? N THR A 82 O ARG A 44 ? O ARG A 90 D 1 2 N CYS A 51 ? N CYS A 97 O LEU A 63 ? O LEU A 109 E 1 2 N LEU A 74 ? N LEU A 120 O GLN A 82 ? O GLN A 128 F 1 2 N ASP A 91 ? N ASP A 137 O TYR A 99 ? O TYR A 145 # _database_PDB_matrix.entry_id 4DEN _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4DEN _atom_sites.fract_transf_matrix[1][1] 0.017788 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017788 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017788 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C K N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 47 ? ? ? A . n A 1 2 SER 2 48 ? ? ? A . n A 1 3 VAL 3 49 49 VAL VAL A . n A 1 4 THR 4 50 50 THR THR A . n A 1 5 ILE 5 51 51 ILE ILE A . n A 1 6 ARG 6 52 52 ARG ARG A . n A 1 7 ASN 7 53 53 ASN ASN A . n A 1 8 ALA 8 54 54 ALA ALA A . n A 1 9 GLN 9 55 55 GLN GLN A . n A 1 10 THR 10 56 56 THR THR A . n A 1 11 GLY 11 57 57 GLY GLY A . n A 1 12 ARG 12 58 58 ARG ARG A . n A 1 13 LEU 13 59 59 LEU LEU A . n A 1 14 LEU 14 60 60 LEU LEU A . n A 1 15 ASP 15 61 61 ASP ASP A . n A 1 16 SER 16 62 62 SER SER A . n A 1 17 ASN 17 63 63 ASN ASN A . n A 1 18 TYR 18 64 64 TYR TYR A . n A 1 19 ASN 19 65 65 ASN ASN A . n A 1 20 GLY 20 66 66 GLY GLY A . n A 1 21 ASN 21 67 67 ASN ASN A . n A 1 22 VAL 22 68 68 VAL VAL A . n A 1 23 TYR 23 69 69 TYR TYR A . n A 1 24 THR 24 70 70 THR THR A . n A 1 25 LEU 25 71 71 LEU LEU A . n A 1 26 PRO 26 72 72 PRO PRO A . n A 1 27 ALA 27 73 73 ALA ALA A . n A 1 28 ASN 28 74 74 ASN ASN A . n A 1 29 GLY 29 75 75 GLY GLY A . n A 1 30 GLY 30 76 76 GLY GLY A . n A 1 31 ASN 31 77 77 ASN ASN A . n A 1 32 TYR 32 78 78 TYR TYR A . n A 1 33 GLN 33 79 79 GLN GLN A . n A 1 34 ARG 34 80 80 ARG ARG A . n A 1 35 TRP 35 81 81 TRP TRP A . n A 1 36 THR 36 82 82 THR THR A . n A 1 37 GLY 37 83 83 GLY GLY A . n A 1 38 PRO 38 84 84 PRO PRO A . n A 1 39 GLY 39 85 85 GLY GLY A . n A 1 40 ASP 40 86 86 ASP ASP A . n A 1 41 GLY 41 87 87 GLY GLY A . n A 1 42 THR 42 88 88 THR THR A . n A 1 43 VAL 43 89 89 VAL VAL A . n A 1 44 ARG 44 90 90 ARG ARG A . n A 1 45 ASN 45 91 91 ASN ASN A . n A 1 46 ALA 46 92 92 ALA ALA A . n A 1 47 GLN 47 93 93 GLN GLN A . n A 1 48 THR 48 94 94 THR THR A . n A 1 49 GLY 49 95 95 GLY GLY A . n A 1 50 ARG 50 96 96 ARG ARG A . n A 1 51 CYS 51 97 97 CYS CYS A . n A 1 52 LEU 52 98 98 LEU LEU A . n A 1 53 ASP 53 99 99 ASP ASP A . n A 1 54 SER 54 100 100 SER SER A . n A 1 55 ASN 55 101 101 ASN ASN A . n A 1 56 TYR 56 102 102 TYR TYR A . n A 1 57 ASP 57 103 103 ASP ASP A . n A 1 58 GLY 58 104 104 GLY GLY A . n A 1 59 ALA 59 105 105 ALA ALA A . n A 1 60 VAL 60 106 106 VAL VAL A . n A 1 61 TYR 61 107 107 TYR TYR A . n A 1 62 THR 62 108 108 THR THR A . n A 1 63 LEU 63 109 109 LEU LEU A . n A 1 64 PRO 64 110 110 PRO PRO A . n A 1 65 CYS 65 111 111 CYS CYS A . n A 1 66 ASN 66 112 112 ASN ASN A . n A 1 67 GLY 67 113 113 GLY GLY A . n A 1 68 GLY 68 114 114 GLY GLY A . n A 1 69 SER 69 115 115 SER SER A . n A 1 70 TYR 70 116 116 TYR TYR A . n A 1 71 GLN 71 117 117 GLN GLN A . n A 1 72 LYS 72 118 118 LYS LYS A . n A 1 73 TRP 73 119 119 TRP TRP A . n A 1 74 LEU 74 120 120 LEU LEU A . n A 1 75 PHE 75 121 121 PHE PHE A . n A 1 76 TYR 76 122 122 TYR TYR A . n A 1 77 SER 77 123 123 SER SER A . n A 1 78 ASN 78 124 124 ASN ASN A . n A 1 79 GLY 79 125 125 GLY GLY A . n A 1 80 TYR 80 126 126 TYR TYR A . n A 1 81 ILE 81 127 127 ILE ILE A . n A 1 82 GLN 82 128 128 GLN GLN A . n A 1 83 ASN 83 129 129 ASN ASN A . n A 1 84 VAL 84 130 130 VAL VAL A . n A 1 85 GLU 85 131 131 GLU GLU A . n A 1 86 THR 86 132 132 THR THR A . n A 1 87 GLY 87 133 133 GLY GLY A . n A 1 88 ARG 88 134 134 ARG ARG A . n A 1 89 VAL 89 135 135 VAL VAL A . n A 1 90 LEU 90 136 136 LEU LEU A . n A 1 91 ASP 91 137 137 ASP ASP A . n A 1 92 SER 92 138 138 SER SER A . n A 1 93 ASN 93 139 139 ASN ASN A . n A 1 94 TYR 94 140 140 TYR TYR A . n A 1 95 ASN 95 141 141 ASN ASN A . n A 1 96 GLY 96 142 142 GLY GLY A . n A 1 97 ASN 97 143 143 ASN ASN A . n A 1 98 VAL 98 144 144 VAL VAL A . n A 1 99 TYR 99 145 145 TYR TYR A . n A 1 100 THR 100 146 146 THR THR A . n A 1 101 LEU 101 147 147 LEU LEU A . n A 1 102 PRO 102 148 148 PRO PRO A . n A 1 103 ALA 103 149 149 ALA ALA A . n A 1 104 ASN 104 150 150 ASN ASN A . n A 1 105 GLY 105 151 151 GLY GLY A . n A 1 106 GLY 106 152 152 GLY GLY A . n A 1 107 ASN 107 153 153 ASN ASN A . n A 1 108 TYR 108 154 154 TYR TYR A . n A 1 109 GLN 109 155 155 GLN GLN A . n A 1 110 LYS 110 156 156 LYS LYS A . n A 1 111 TRP 111 157 157 TRP TRP A . n A 1 112 TYR 112 158 158 TYR TYR A . n A 1 113 THR 113 159 159 THR THR A . n A 1 114 GLY 114 160 160 GLY GLY A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 K 1 204 93 K K A . F 3 K 1 205 96 K K A . G 3 K 1 206 99 K K A . H 4 HOH 1 301 1 HOH HOH A . H 4 HOH 2 302 2 HOH HOH A . H 4 HOH 3 303 3 HOH HOH A . H 4 HOH 4 304 4 HOH HOH A . H 4 HOH 5 305 6 HOH HOH A . H 4 HOH 6 306 7 HOH HOH A . H 4 HOH 7 307 8 HOH HOH A . H 4 HOH 8 308 10 HOH HOH A . H 4 HOH 9 309 11 HOH HOH A . H 4 HOH 10 310 12 HOH HOH A . H 4 HOH 11 311 13 HOH HOH A . H 4 HOH 12 312 14 HOH HOH A . H 4 HOH 13 313 15 HOH HOH A . H 4 HOH 14 314 16 HOH HOH A . H 4 HOH 15 315 17 HOH HOH A . H 4 HOH 16 316 18 HOH HOH A . H 4 HOH 17 317 19 HOH HOH A . H 4 HOH 18 318 20 HOH HOH A . H 4 HOH 19 319 21 HOH HOH A . H 4 HOH 20 320 22 HOH HOH A . H 4 HOH 21 321 23 HOH HOH A . H 4 HOH 22 322 24 HOH HOH A . H 4 HOH 23 323 25 HOH HOH A . H 4 HOH 24 324 26 HOH HOH A . H 4 HOH 25 325 27 HOH HOH A . H 4 HOH 26 326 28 HOH HOH A . H 4 HOH 27 327 29 HOH HOH A . H 4 HOH 28 328 30 HOH HOH A . H 4 HOH 29 329 31 HOH HOH A . H 4 HOH 30 330 32 HOH HOH A . H 4 HOH 31 331 33 HOH HOH A . H 4 HOH 32 332 34 HOH HOH A . H 4 HOH 33 333 35 HOH HOH A . H 4 HOH 34 334 36 HOH HOH A . H 4 HOH 35 335 37 HOH HOH A . H 4 HOH 36 336 38 HOH HOH A . H 4 HOH 37 337 39 HOH HOH A . H 4 HOH 38 338 40 HOH HOH A . H 4 HOH 39 339 41 HOH HOH A . H 4 HOH 40 340 51 HOH HOH A . H 4 HOH 41 341 52 HOH HOH A . H 4 HOH 42 342 53 HOH HOH A . H 4 HOH 43 343 54 HOH HOH A . H 4 HOH 44 344 55 HOH HOH A . H 4 HOH 45 345 56 HOH HOH A . H 4 HOH 46 346 57 HOH HOH A . H 4 HOH 47 347 58 HOH HOH A . H 4 HOH 48 348 59 HOH HOH A . H 4 HOH 49 349 62 HOH HOH A . H 4 HOH 50 350 64 HOH HOH A . H 4 HOH 51 351 65 HOH HOH A . H 4 HOH 52 352 66 HOH HOH A . H 4 HOH 53 353 67 HOH HOH A . H 4 HOH 54 354 68 HOH HOH A . H 4 HOH 55 355 69 HOH HOH A . H 4 HOH 56 356 70 HOH HOH A . H 4 HOH 57 357 71 HOH HOH A . H 4 HOH 58 358 72 HOH HOH A . H 4 HOH 59 359 73 HOH HOH A . H 4 HOH 60 360 74 HOH HOH A . H 4 HOH 61 361 75 HOH HOH A . H 4 HOH 62 362 76 HOH HOH A . H 4 HOH 63 363 77 HOH HOH A . H 4 HOH 64 364 78 HOH HOH A . H 4 HOH 65 365 79 HOH HOH A . H 4 HOH 66 366 80 HOH HOH A . H 4 HOH 67 367 81 HOH HOH A . H 4 HOH 68 368 82 HOH HOH A . H 4 HOH 69 369 83 HOH HOH A . # _pdbx_molecule_features.prd_id PRD_900111 _pdbx_molecule_features.name 2alpha-alpha-mannobiose _pdbx_molecule_features.type Oligosaccharide _pdbx_molecule_features.class Metabolism _pdbx_molecule_features.details oligosaccharide # loop_ _pdbx_molecule.instance_id _pdbx_molecule.prd_id _pdbx_molecule.asym_id 1 PRD_900111 B 2 PRD_900111 C 3 PRD_900111 D # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A K 204 ? E K . 2 1 A K 205 ? F K . 3 1 A HOH 307 ? H HOH . 4 1 A HOH 315 ? H HOH . # _pdbx_struct_conn_angle.id 1 _pdbx_struct_conn_angle.ptnr1_label_atom_id O _pdbx_struct_conn_angle.ptnr1_label_alt_id ? _pdbx_struct_conn_angle.ptnr1_label_asym_id A _pdbx_struct_conn_angle.ptnr1_label_comp_id ASN _pdbx_struct_conn_angle.ptnr1_label_seq_id 104 _pdbx_struct_conn_angle.ptnr1_auth_atom_id ? _pdbx_struct_conn_angle.ptnr1_auth_asym_id A _pdbx_struct_conn_angle.ptnr1_auth_comp_id ASN _pdbx_struct_conn_angle.ptnr1_auth_seq_id 150 _pdbx_struct_conn_angle.ptnr1_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr1_symmetry 1_555 _pdbx_struct_conn_angle.ptnr2_label_atom_id K _pdbx_struct_conn_angle.ptnr2_label_alt_id ? _pdbx_struct_conn_angle.ptnr2_label_asym_id E _pdbx_struct_conn_angle.ptnr2_label_comp_id K _pdbx_struct_conn_angle.ptnr2_label_seq_id . _pdbx_struct_conn_angle.ptnr2_auth_atom_id ? _pdbx_struct_conn_angle.ptnr2_auth_asym_id A _pdbx_struct_conn_angle.ptnr2_auth_comp_id K _pdbx_struct_conn_angle.ptnr2_auth_seq_id 204 _pdbx_struct_conn_angle.ptnr2_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr2_symmetry 1_555 _pdbx_struct_conn_angle.ptnr3_label_atom_id O2 _pdbx_struct_conn_angle.ptnr3_label_alt_id ? _pdbx_struct_conn_angle.ptnr3_label_asym_id D _pdbx_struct_conn_angle.ptnr3_label_comp_id MAN _pdbx_struct_conn_angle.ptnr3_label_seq_id . _pdbx_struct_conn_angle.ptnr3_auth_atom_id ? _pdbx_struct_conn_angle.ptnr3_auth_asym_id D _pdbx_struct_conn_angle.ptnr3_auth_comp_id MAN _pdbx_struct_conn_angle.ptnr3_auth_seq_id 2 _pdbx_struct_conn_angle.ptnr3_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr3_symmetry 1_555 _pdbx_struct_conn_angle.value 106.0 _pdbx_struct_conn_angle.value_esd ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-11-28 2 'Structure model' 2 0 2020-07-29 3 'Structure model' 2 1 2023-11-08 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Atomic model' 3 2 'Structure model' 'Data collection' 4 2 'Structure model' 'Derived calculations' 5 2 'Structure model' 'Non-polymer description' 6 2 'Structure model' 'Structure summary' 7 3 'Structure model' 'Data collection' 8 3 'Structure model' 'Database references' 9 3 'Structure model' 'Refinement description' 10 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' atom_site 2 2 'Structure model' chem_comp 3 2 'Structure model' entity 4 2 'Structure model' entity_name_com 5 2 'Structure model' pdbx_branch_scheme 6 2 'Structure model' pdbx_chem_comp_identifier 7 2 'Structure model' pdbx_entity_branch 8 2 'Structure model' pdbx_entity_branch_descriptor 9 2 'Structure model' pdbx_entity_branch_link 10 2 'Structure model' pdbx_entity_branch_list 11 2 'Structure model' pdbx_entity_nonpoly 12 2 'Structure model' pdbx_molecule_features 13 2 'Structure model' pdbx_nonpoly_scheme 14 2 'Structure model' pdbx_struct_conn_angle 15 2 'Structure model' pdbx_validate_symm_contact 16 2 'Structure model' struct_conn 17 2 'Structure model' struct_conn_type 18 2 'Structure model' struct_site 19 2 'Structure model' struct_site_gen 20 3 'Structure model' chem_comp 21 3 'Structure model' chem_comp_atom 22 3 'Structure model' chem_comp_bond 23 3 'Structure model' database_2 24 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_atom_site.B_iso_or_equiv' 2 2 'Structure model' '_atom_site.Cartn_x' 3 2 'Structure model' '_atom_site.Cartn_y' 4 2 'Structure model' '_atom_site.Cartn_z' 5 2 'Structure model' '_atom_site.auth_asym_id' 6 2 'Structure model' '_atom_site.auth_atom_id' 7 2 'Structure model' '_atom_site.auth_comp_id' 8 2 'Structure model' '_atom_site.auth_seq_id' 9 2 'Structure model' '_atom_site.label_atom_id' 10 2 'Structure model' '_atom_site.label_comp_id' 11 2 'Structure model' '_atom_site.type_symbol' 12 2 'Structure model' '_chem_comp.formula' 13 2 'Structure model' '_chem_comp.formula_weight' 14 2 'Structure model' '_chem_comp.id' 15 2 'Structure model' '_chem_comp.mon_nstd_flag' 16 2 'Structure model' '_chem_comp.name' 17 2 'Structure model' '_chem_comp.type' 18 2 'Structure model' '_entity.formula_weight' 19 2 'Structure model' '_entity.pdbx_description' 20 2 'Structure model' '_entity.type' 21 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 22 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 23 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 24 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 25 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 26 2 'Structure model' '_pdbx_validate_symm_contact.auth_asym_id_1' 27 2 'Structure model' '_pdbx_validate_symm_contact.auth_comp_id_1' 28 2 'Structure model' '_pdbx_validate_symm_contact.auth_seq_id_1' 29 3 'Structure model' '_chem_comp.pdbx_synonyms' 30 3 'Structure model' '_database_2.pdbx_DOI' 31 3 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 AMoRE phasing . ? 2 REFMAC refinement 5.5.0109 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 313 ? ? O A HOH 366 ? ? 1.96 2 1 O A HOH 306 ? ? O A HOH 326 ? ? 1.96 3 1 O A HOH 311 ? ? O A HOH 347 ? ? 2.04 4 1 OD1 A ASN 67 ? ? O A HOH 321 ? ? 2.04 5 1 O A HOH 346 ? ? O A HOH 362 ? ? 2.12 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 306 ? ? 1_555 O A HOH 328 ? ? 12_554 1.34 2 1 O A HOH 320 ? ? 1_555 O A HOH 333 ? ? 10_545 1.50 3 1 O A HOH 328 ? ? 1_555 O A HOH 329 ? ? 6_555 1.54 4 1 O A HOH 330 ? ? 1_555 O A HOH 363 ? ? 9_555 1.59 5 1 O A HOH 334 ? ? 1_555 O A HOH 337 ? ? 9_555 1.59 6 1 OD1 A ASN 143 ? ? 1_555 O A HOH 321 ? ? 5_555 1.62 7 1 O6 C MAN 2 ? ? 1_555 O A HOH 364 ? ? 5_555 1.73 8 1 O A HOH 327 ? ? 1_555 O A HOH 330 ? ? 11_555 1.84 9 1 O6 D MAN 2 ? ? 1_555 O A HOH 364 ? ? 9_555 1.84 10 1 O A HOH 367 ? ? 1_555 O A HOH 369 ? ? 9_555 1.86 11 1 O A HOH 327 ? ? 1_555 O A HOH 329 ? ? 6_555 1.86 12 1 OE1 A GLN 55 ? ? 1_555 O A HOH 364 ? ? 8_545 1.91 13 1 O A HOH 312 ? ? 1_555 O A HOH 313 ? ? 9_555 2.05 14 1 O A HOH 368 ? ? 1_555 O A HOH 369 ? ? 9_555 2.08 15 1 O A HOH 343 ? ? 1_555 O A HOH 359 ? ? 5_555 2.09 16 1 O A HOH 301 ? ? 1_555 O A HOH 314 ? ? 9_555 2.13 17 1 O A HOH 331 ? ? 1_555 O A HOH 361 ? ? 9_555 2.14 18 1 O A HOH 301 ? ? 1_555 O A HOH 338 ? ? 5_555 2.18 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 47 ? A ALA 1 2 1 Y 1 A SER 48 ? A SER 2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HOH O O N N 137 HOH H1 H N N 138 HOH H2 H N N 139 ILE N N N N 140 ILE CA C N S 141 ILE C C N N 142 ILE O O N N 143 ILE CB C N S 144 ILE CG1 C N N 145 ILE CG2 C N N 146 ILE CD1 C N N 147 ILE OXT O N N 148 ILE H H N N 149 ILE H2 H N N 150 ILE HA H N N 151 ILE HB H N N 152 ILE HG12 H N N 153 ILE HG13 H N N 154 ILE HG21 H N N 155 ILE HG22 H N N 156 ILE HG23 H N N 157 ILE HD11 H N N 158 ILE HD12 H N N 159 ILE HD13 H N N 160 ILE HXT H N N 161 K K K N N 162 LEU N N N N 163 LEU CA C N S 164 LEU C C N N 165 LEU O O N N 166 LEU CB C N N 167 LEU CG C N N 168 LEU CD1 C N N 169 LEU CD2 C N N 170 LEU OXT O N N 171 LEU H H N N 172 LEU H2 H N N 173 LEU HA H N N 174 LEU HB2 H N N 175 LEU HB3 H N N 176 LEU HG H N N 177 LEU HD11 H N N 178 LEU HD12 H N N 179 LEU HD13 H N N 180 LEU HD21 H N N 181 LEU HD22 H N N 182 LEU HD23 H N N 183 LEU HXT H N N 184 LYS N N N N 185 LYS CA C N S 186 LYS C C N N 187 LYS O O N N 188 LYS CB C N N 189 LYS CG C N N 190 LYS CD C N N 191 LYS CE C N N 192 LYS NZ N N N 193 LYS OXT O N N 194 LYS H H N N 195 LYS H2 H N N 196 LYS HA H N N 197 LYS HB2 H N N 198 LYS HB3 H N N 199 LYS HG2 H N N 200 LYS HG3 H N N 201 LYS HD2 H N N 202 LYS HD3 H N N 203 LYS HE2 H N N 204 LYS HE3 H N N 205 LYS HZ1 H N N 206 LYS HZ2 H N N 207 LYS HZ3 H N N 208 LYS HXT H N N 209 MAN C1 C N S 210 MAN C2 C N S 211 MAN C3 C N S 212 MAN C4 C N S 213 MAN C5 C N R 214 MAN C6 C N N 215 MAN O1 O N N 216 MAN O2 O N N 217 MAN O3 O N N 218 MAN O4 O N N 219 MAN O5 O N N 220 MAN O6 O N N 221 MAN H1 H N N 222 MAN H2 H N N 223 MAN H3 H N N 224 MAN H4 H N N 225 MAN H5 H N N 226 MAN H61 H N N 227 MAN H62 H N N 228 MAN HO1 H N N 229 MAN HO2 H N N 230 MAN HO3 H N N 231 MAN HO4 H N N 232 MAN HO6 H N N 233 PHE N N N N 234 PHE CA C N S 235 PHE C C N N 236 PHE O O N N 237 PHE CB C N N 238 PHE CG C Y N 239 PHE CD1 C Y N 240 PHE CD2 C Y N 241 PHE CE1 C Y N 242 PHE CE2 C Y N 243 PHE CZ C Y N 244 PHE OXT O N N 245 PHE H H N N 246 PHE H2 H N N 247 PHE HA H N N 248 PHE HB2 H N N 249 PHE HB3 H N N 250 PHE HD1 H N N 251 PHE HD2 H N N 252 PHE HE1 H N N 253 PHE HE2 H N N 254 PHE HZ H N N 255 PHE HXT H N N 256 PRO N N N N 257 PRO CA C N S 258 PRO C C N N 259 PRO O O N N 260 PRO CB C N N 261 PRO CG C N N 262 PRO CD C N N 263 PRO OXT O N N 264 PRO H H N N 265 PRO HA H N N 266 PRO HB2 H N N 267 PRO HB3 H N N 268 PRO HG2 H N N 269 PRO HG3 H N N 270 PRO HD2 H N N 271 PRO HD3 H N N 272 PRO HXT H N N 273 SER N N N N 274 SER CA C N S 275 SER C C N N 276 SER O O N N 277 SER CB C N N 278 SER OG O N N 279 SER OXT O N N 280 SER H H N N 281 SER H2 H N N 282 SER HA H N N 283 SER HB2 H N N 284 SER HB3 H N N 285 SER HG H N N 286 SER HXT H N N 287 THR N N N N 288 THR CA C N S 289 THR C C N N 290 THR O O N N 291 THR CB C N R 292 THR OG1 O N N 293 THR CG2 C N N 294 THR OXT O N N 295 THR H H N N 296 THR H2 H N N 297 THR HA H N N 298 THR HB H N N 299 THR HG1 H N N 300 THR HG21 H N N 301 THR HG22 H N N 302 THR HG23 H N N 303 THR HXT H N N 304 TRP N N N N 305 TRP CA C N S 306 TRP C C N N 307 TRP O O N N 308 TRP CB C N N 309 TRP CG C Y N 310 TRP CD1 C Y N 311 TRP CD2 C Y N 312 TRP NE1 N Y N 313 TRP CE2 C Y N 314 TRP CE3 C Y N 315 TRP CZ2 C Y N 316 TRP CZ3 C Y N 317 TRP CH2 C Y N 318 TRP OXT O N N 319 TRP H H N N 320 TRP H2 H N N 321 TRP HA H N N 322 TRP HB2 H N N 323 TRP HB3 H N N 324 TRP HD1 H N N 325 TRP HE1 H N N 326 TRP HE3 H N N 327 TRP HZ2 H N N 328 TRP HZ3 H N N 329 TRP HH2 H N N 330 TRP HXT H N N 331 TYR N N N N 332 TYR CA C N S 333 TYR C C N N 334 TYR O O N N 335 TYR CB C N N 336 TYR CG C Y N 337 TYR CD1 C Y N 338 TYR CD2 C Y N 339 TYR CE1 C Y N 340 TYR CE2 C Y N 341 TYR CZ C Y N 342 TYR OH O N N 343 TYR OXT O N N 344 TYR H H N N 345 TYR H2 H N N 346 TYR HA H N N 347 TYR HB2 H N N 348 TYR HB3 H N N 349 TYR HD1 H N N 350 TYR HD2 H N N 351 TYR HE1 H N N 352 TYR HE2 H N N 353 TYR HH H N N 354 TYR HXT H N N 355 VAL N N N N 356 VAL CA C N S 357 VAL C C N N 358 VAL O O N N 359 VAL CB C N N 360 VAL CG1 C N N 361 VAL CG2 C N N 362 VAL OXT O N N 363 VAL H H N N 364 VAL H2 H N N 365 VAL HA H N N 366 VAL HB H N N 367 VAL HG11 H N N 368 VAL HG12 H N N 369 VAL HG13 H N N 370 VAL HG21 H N N 371 VAL HG22 H N N 372 VAL HG23 H N N 373 VAL HXT H N N 374 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HOH O H1 sing N N 129 HOH O H2 sing N N 130 ILE N CA sing N N 131 ILE N H sing N N 132 ILE N H2 sing N N 133 ILE CA C sing N N 134 ILE CA CB sing N N 135 ILE CA HA sing N N 136 ILE C O doub N N 137 ILE C OXT sing N N 138 ILE CB CG1 sing N N 139 ILE CB CG2 sing N N 140 ILE CB HB sing N N 141 ILE CG1 CD1 sing N N 142 ILE CG1 HG12 sing N N 143 ILE CG1 HG13 sing N N 144 ILE CG2 HG21 sing N N 145 ILE CG2 HG22 sing N N 146 ILE CG2 HG23 sing N N 147 ILE CD1 HD11 sing N N 148 ILE CD1 HD12 sing N N 149 ILE CD1 HD13 sing N N 150 ILE OXT HXT sing N N 151 LEU N CA sing N N 152 LEU N H sing N N 153 LEU N H2 sing N N 154 LEU CA C sing N N 155 LEU CA CB sing N N 156 LEU CA HA sing N N 157 LEU C O doub N N 158 LEU C OXT sing N N 159 LEU CB CG sing N N 160 LEU CB HB2 sing N N 161 LEU CB HB3 sing N N 162 LEU CG CD1 sing N N 163 LEU CG CD2 sing N N 164 LEU CG HG sing N N 165 LEU CD1 HD11 sing N N 166 LEU CD1 HD12 sing N N 167 LEU CD1 HD13 sing N N 168 LEU CD2 HD21 sing N N 169 LEU CD2 HD22 sing N N 170 LEU CD2 HD23 sing N N 171 LEU OXT HXT sing N N 172 LYS N CA sing N N 173 LYS N H sing N N 174 LYS N H2 sing N N 175 LYS CA C sing N N 176 LYS CA CB sing N N 177 LYS CA HA sing N N 178 LYS C O doub N N 179 LYS C OXT sing N N 180 LYS CB CG sing N N 181 LYS CB HB2 sing N N 182 LYS CB HB3 sing N N 183 LYS CG CD sing N N 184 LYS CG HG2 sing N N 185 LYS CG HG3 sing N N 186 LYS CD CE sing N N 187 LYS CD HD2 sing N N 188 LYS CD HD3 sing N N 189 LYS CE NZ sing N N 190 LYS CE HE2 sing N N 191 LYS CE HE3 sing N N 192 LYS NZ HZ1 sing N N 193 LYS NZ HZ2 sing N N 194 LYS NZ HZ3 sing N N 195 LYS OXT HXT sing N N 196 MAN C1 C2 sing N N 197 MAN C1 O1 sing N N 198 MAN C1 O5 sing N N 199 MAN C1 H1 sing N N 200 MAN C2 C3 sing N N 201 MAN C2 O2 sing N N 202 MAN C2 H2 sing N N 203 MAN C3 C4 sing N N 204 MAN C3 O3 sing N N 205 MAN C3 H3 sing N N 206 MAN C4 C5 sing N N 207 MAN C4 O4 sing N N 208 MAN C4 H4 sing N N 209 MAN C5 C6 sing N N 210 MAN C5 O5 sing N N 211 MAN C5 H5 sing N N 212 MAN C6 O6 sing N N 213 MAN C6 H61 sing N N 214 MAN C6 H62 sing N N 215 MAN O1 HO1 sing N N 216 MAN O2 HO2 sing N N 217 MAN O3 HO3 sing N N 218 MAN O4 HO4 sing N N 219 MAN O6 HO6 sing N N 220 PHE N CA sing N N 221 PHE N H sing N N 222 PHE N H2 sing N N 223 PHE CA C sing N N 224 PHE CA CB sing N N 225 PHE CA HA sing N N 226 PHE C O doub N N 227 PHE C OXT sing N N 228 PHE CB CG sing N N 229 PHE CB HB2 sing N N 230 PHE CB HB3 sing N N 231 PHE CG CD1 doub Y N 232 PHE CG CD2 sing Y N 233 PHE CD1 CE1 sing Y N 234 PHE CD1 HD1 sing N N 235 PHE CD2 CE2 doub Y N 236 PHE CD2 HD2 sing N N 237 PHE CE1 CZ doub Y N 238 PHE CE1 HE1 sing N N 239 PHE CE2 CZ sing Y N 240 PHE CE2 HE2 sing N N 241 PHE CZ HZ sing N N 242 PHE OXT HXT sing N N 243 PRO N CA sing N N 244 PRO N CD sing N N 245 PRO N H sing N N 246 PRO CA C sing N N 247 PRO CA CB sing N N 248 PRO CA HA sing N N 249 PRO C O doub N N 250 PRO C OXT sing N N 251 PRO CB CG sing N N 252 PRO CB HB2 sing N N 253 PRO CB HB3 sing N N 254 PRO CG CD sing N N 255 PRO CG HG2 sing N N 256 PRO CG HG3 sing N N 257 PRO CD HD2 sing N N 258 PRO CD HD3 sing N N 259 PRO OXT HXT sing N N 260 SER N CA sing N N 261 SER N H sing N N 262 SER N H2 sing N N 263 SER CA C sing N N 264 SER CA CB sing N N 265 SER CA HA sing N N 266 SER C O doub N N 267 SER C OXT sing N N 268 SER CB OG sing N N 269 SER CB HB2 sing N N 270 SER CB HB3 sing N N 271 SER OG HG sing N N 272 SER OXT HXT sing N N 273 THR N CA sing N N 274 THR N H sing N N 275 THR N H2 sing N N 276 THR CA C sing N N 277 THR CA CB sing N N 278 THR CA HA sing N N 279 THR C O doub N N 280 THR C OXT sing N N 281 THR CB OG1 sing N N 282 THR CB CG2 sing N N 283 THR CB HB sing N N 284 THR OG1 HG1 sing N N 285 THR CG2 HG21 sing N N 286 THR CG2 HG22 sing N N 287 THR CG2 HG23 sing N N 288 THR OXT HXT sing N N 289 TRP N CA sing N N 290 TRP N H sing N N 291 TRP N H2 sing N N 292 TRP CA C sing N N 293 TRP CA CB sing N N 294 TRP CA HA sing N N 295 TRP C O doub N N 296 TRP C OXT sing N N 297 TRP CB CG sing N N 298 TRP CB HB2 sing N N 299 TRP CB HB3 sing N N 300 TRP CG CD1 doub Y N 301 TRP CG CD2 sing Y N 302 TRP CD1 NE1 sing Y N 303 TRP CD1 HD1 sing N N 304 TRP CD2 CE2 doub Y N 305 TRP CD2 CE3 sing Y N 306 TRP NE1 CE2 sing Y N 307 TRP NE1 HE1 sing N N 308 TRP CE2 CZ2 sing Y N 309 TRP CE3 CZ3 doub Y N 310 TRP CE3 HE3 sing N N 311 TRP CZ2 CH2 doub Y N 312 TRP CZ2 HZ2 sing N N 313 TRP CZ3 CH2 sing Y N 314 TRP CZ3 HZ3 sing N N 315 TRP CH2 HH2 sing N N 316 TRP OXT HXT sing N N 317 TYR N CA sing N N 318 TYR N H sing N N 319 TYR N H2 sing N N 320 TYR CA C sing N N 321 TYR CA CB sing N N 322 TYR CA HA sing N N 323 TYR C O doub N N 324 TYR C OXT sing N N 325 TYR CB CG sing N N 326 TYR CB HB2 sing N N 327 TYR CB HB3 sing N N 328 TYR CG CD1 doub Y N 329 TYR CG CD2 sing Y N 330 TYR CD1 CE1 sing Y N 331 TYR CD1 HD1 sing N N 332 TYR CD2 CE2 doub Y N 333 TYR CD2 HD2 sing N N 334 TYR CE1 CZ doub Y N 335 TYR CE1 HE1 sing N N 336 TYR CE2 CZ sing Y N 337 TYR CE2 HE2 sing N N 338 TYR CZ OH sing N N 339 TYR OH HH sing N N 340 TYR OXT HXT sing N N 341 VAL N CA sing N N 342 VAL N H sing N N 343 VAL N H2 sing N N 344 VAL CA C sing N N 345 VAL CA CB sing N N 346 VAL CA HA sing N N 347 VAL C O doub N N 348 VAL C OXT sing N N 349 VAL CB CG1 sing N N 350 VAL CB CG2 sing N N 351 VAL CB HB sing N N 352 VAL CG1 HG11 sing N N 353 VAL CG1 HG12 sing N N 354 VAL CG1 HG13 sing N N 355 VAL CG2 HG21 sing N N 356 VAL CG2 HG22 sing N N 357 VAL CG2 HG23 sing N N 358 VAL OXT HXT sing N N 359 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 MAN 1 B MAN 1 B MAB 5034 n B 2 MAN 2 B MAN 2 B MAB 5034 n C 2 MAN 1 C MAN 1 B MAB 5044 n C 2 MAN 2 C MAN 2 B MAB 5044 n D 2 MAN 1 D MAN 1 B MAB 5054 n D 2 MAN 2 D MAN 2 B MAB 5054 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier MAN 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpa MAN 'COMMON NAME' GMML 1.0 a-D-mannopyranose MAN 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Manp MAN 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DManpa1-2DManpa1-ROH 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/1,2,1/[a1122h-1a_1-5]/1-1/a2-b1' WURCS PDB2Glycan 1.1.0 3 2 '[][a-D-Manp]{[(2+1)][a-D-Manp]{}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.comp_id_1 MAN _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_2 MAN _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 MAN 1 n 2 MAN 2 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'POTASSIUM ION' K 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3A07 _pdbx_initial_refinement_model.details 'PDB ENTRY 3A07' #