data_4DER # _entry.id 4DER # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4DER pdb_00004der 10.2210/pdb4der/pdb RCSB RCSB070237 ? ? WWPDB D_1000070237 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3KGT . unspecified PDB 3KGU . unspecified PDB 3KGS . unspecified PDB 3NEE . unspecified PDB 3NEO . unspecified PDB 3NES . unspecified PDB 4DES . unspecified PDB 4DET . unspecified PDB 4DEU . unspecified PDB 4DEW . unspecified # _pdbx_database_status.entry_id 4DER _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-01-21 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Trivella, D.B.B.' 1 'Polikarpov, I.' 2 # _citation.id primary _citation.title 'Flavonoid interactions with human transthyretin: Combined structural and thermodynamic analysis.' _citation.journal_abbrev J.Struct.Biol. _citation.journal_volume 180 _citation.page_first 143 _citation.page_last 153 _citation.year 2012 _citation.journal_id_ASTM JSBIEM _citation.country US _citation.journal_id_ISSN 1047-8477 _citation.journal_id_CSD 0803 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22842046 _citation.pdbx_database_id_DOI 10.1016/j.jsb.2012.07.008 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Trivella, D.B.' 1 ? primary 'Dos Reis, C.V.' 2 ? primary 'Lima, L.M.' 3 ? primary 'Foguel, D.' 4 ? primary 'Polikarpov, I.' 5 ? # _cell.length_a 43.152 _cell.length_b 85.132 _cell.length_c 64.458 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 4DER _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.entry_id 4DER _symmetry.Int_Tables_number 18 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Transthyretin 12703.217 2 ? ? 'UNP residues 30-145' ? 2 non-polymer syn '5,7-dihydroxy-2-(4-hydroxyphenyl)-4H-chromen-4-one' 270.237 2 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 4 water nat water 18.015 124 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'ATTR, Prealbumin, TBPA' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;CPLMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHE HAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTNP ; _entity_poly.pdbx_seq_one_letter_code_can ;CPLMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHE HAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTNP ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 CYS n 1 2 PRO n 1 3 LEU n 1 4 MET n 1 5 VAL n 1 6 LYS n 1 7 VAL n 1 8 LEU n 1 9 ASP n 1 10 ALA n 1 11 VAL n 1 12 ARG n 1 13 GLY n 1 14 SER n 1 15 PRO n 1 16 ALA n 1 17 ILE n 1 18 ASN n 1 19 VAL n 1 20 ALA n 1 21 VAL n 1 22 HIS n 1 23 VAL n 1 24 PHE n 1 25 ARG n 1 26 LYS n 1 27 ALA n 1 28 ALA n 1 29 ASP n 1 30 ASP n 1 31 THR n 1 32 TRP n 1 33 GLU n 1 34 PRO n 1 35 PHE n 1 36 ALA n 1 37 SER n 1 38 GLY n 1 39 LYS n 1 40 THR n 1 41 SER n 1 42 GLU n 1 43 SER n 1 44 GLY n 1 45 GLU n 1 46 LEU n 1 47 HIS n 1 48 GLY n 1 49 LEU n 1 50 THR n 1 51 THR n 1 52 GLU n 1 53 GLU n 1 54 GLU n 1 55 PHE n 1 56 VAL n 1 57 GLU n 1 58 GLY n 1 59 ILE n 1 60 TYR n 1 61 LYS n 1 62 VAL n 1 63 GLU n 1 64 ILE n 1 65 ASP n 1 66 THR n 1 67 LYS n 1 68 SER n 1 69 TYR n 1 70 TRP n 1 71 LYS n 1 72 ALA n 1 73 LEU n 1 74 GLY n 1 75 ILE n 1 76 SER n 1 77 PRO n 1 78 PHE n 1 79 HIS n 1 80 GLU n 1 81 HIS n 1 82 ALA n 1 83 GLU n 1 84 VAL n 1 85 VAL n 1 86 PHE n 1 87 THR n 1 88 ALA n 1 89 ASN n 1 90 ASP n 1 91 SER n 1 92 GLY n 1 93 PRO n 1 94 ARG n 1 95 ARG n 1 96 TYR n 1 97 THR n 1 98 ILE n 1 99 ALA n 1 100 ALA n 1 101 LEU n 1 102 LEU n 1 103 SER n 1 104 PRO n 1 105 TYR n 1 106 SER n 1 107 TYR n 1 108 SER n 1 109 THR n 1 110 THR n 1 111 ALA n 1 112 VAL n 1 113 VAL n 1 114 THR n 1 115 ASN n 1 116 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'PALB, TTR' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TTHY_HUMAN _struct_ref.pdbx_db_accession P02766 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;CPLMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHE HAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTNP ; _struct_ref.pdbx_align_begin 30 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4DER A 1 ? 116 ? P02766 30 ? 145 ? 10 125 2 1 4DER B 1 ? 116 ? P02766 30 ? 145 ? 10 125 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight AGI non-polymer . '5,7-dihydroxy-2-(4-hydroxyphenyl)-4H-chromen-4-one' Apigenin 'C15 H10 O5' 270.237 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4DER _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.33 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 47.21 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details '0.2 M calcium chloride, 0.1 M HEPES, pH 7.5, 28% PEG400, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2009-12 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'double flat crystal Si(111)' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.4589 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'LNLS BEAMLINE W01B-MX2' _diffrn_source.pdbx_wavelength_list 1.4589 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site LNLS _diffrn_source.pdbx_synchrotron_beamline W01B-MX2 # _reflns.entry_id 4DER _reflns.d_resolution_high 1.850 _reflns.d_resolution_low 30.0 _reflns.number_obs 19821 _reflns.pdbx_Rmerge_I_obs 0.089 _reflns.pdbx_netI_over_sigmaI 7.9 _reflns.pdbx_chi_squared 1.065 _reflns.pdbx_redundancy 5.1 _reflns.percent_possible_obs 94.4 _reflns.observed_criterion_sigma_F 2 _reflns.observed_criterion_sigma_I 2 _reflns.number_all 20996 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.850 1.920 ? ? ? 0.506 ? ? 1.156 3.7 ? 1480 72.5 1 1 1.920 1.990 ? ? ? 0.338 ? ? 0.987 4.3 ? 1675 80.8 2 1 1.990 2.080 ? ? ? 0.296 ? ? 1.067 4.7 ? 1891 92.1 3 1 2.080 2.190 ? ? ? 0.235 ? ? 1.031 5.1 ? 2015 98.1 4 1 2.190 2.330 ? ? ? 0.209 ? ? 1.066 5.3 ? 2096 100.0 5 1 2.330 2.510 ? ? ? 0.177 ? ? 1.084 5.4 ? 2089 100.0 6 1 2.510 2.760 ? ? ? 0.141 ? ? 1.099 5.4 ? 2087 100.0 7 1 2.760 3.160 ? ? ? 0.118 ? ? 1.033 5.5 ? 2102 100.0 8 1 3.160 3.980 ? ? ? 0.067 ? ? 1.111 5.4 ? 2143 100.0 9 1 3.980 30.000 ? ? ? 0.044 ? ? 1.035 5.2 ? 2243 99.4 10 1 # _refine.entry_id 4DER _refine.ls_d_res_high 1.900 _refine.ls_d_res_low 21.49 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 96.3 _refine.ls_number_reflns_obs 18668 _refine.ls_number_reflns_all 19632 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ? _refine.ls_R_factor_all 0.1917 _refine.ls_R_factor_obs 0.1917 _refine.ls_R_factor_R_work 0.1893 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2353 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.2 _refine.ls_number_reflns_R_free 964 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 27.1959 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.0200 _refine.aniso_B[2][2] -0.0300 _refine.aniso_B[3][3] 0.0000 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9590 _refine.correlation_coeff_Fo_to_Fc_free 0.9430 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.1740 _refine.pdbx_overall_ESU_R_Free 0.1580 _refine.overall_SU_ML 0.1040 _refine.overall_SU_B 3.5190 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB ENTRY 3CFM' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 64.920 _refine.B_iso_min 12.880 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.000 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1778 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 46 _refine_hist.number_atoms_solvent 124 _refine_hist.number_atoms_total 1948 _refine_hist.d_res_high 1.900 _refine_hist.d_res_low 21.49 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 2022 0.014 0.022 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2789 1.422 1.975 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 269 5.810 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 82 33.548 24.390 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 317 14.545 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 7 13.274 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 308 0.096 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1583 0.008 0.021 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 1242 0.892 1.500 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 2040 1.622 2.000 ? ? 'X-RAY DIFFRACTION' r_scbond_it 780 2.240 3.000 ? ? 'X-RAY DIFFRACTION' r_scangle_it 739 3.487 4.500 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.900 _refine_ls_shell.d_res_low 1.949 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 77.57 _refine_ls_shell.number_reflns_R_work 1031 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2580 _refine_ls_shell.R_factor_R_free 0.3150 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 65 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1096 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4DER _struct.title 'Crystal Structure of the Wild Type TTR Binding Apigenin (TTRwt:API)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4DER _struct_keywords.text 'beta sandwich, amyloidosis, TRANSPORT PROTEIN' _struct_keywords.pdbx_keywords 'TRANSPORT PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 4 ? G N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 65 ? LEU A 73 ? ASP A 74 LEU A 82 1 ? 9 HELX_P HELX_P2 2 ASP B 65 ? LEU B 73 ? ASP B 74 LEU B 82 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 8 ? B ? 8 ? C ? 4 ? D ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? parallel A 7 8 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? parallel B 7 8 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 14 ? PRO A 15 ? SER A 23 PRO A 24 A 2 LEU A 3 ? ASP A 9 ? LEU A 12 ASP A 18 A 3 ARG A 95 ? SER A 103 ? ARG A 104 SER A 112 A 4 SER A 106 ? THR A 114 ? SER A 115 THR A 123 A 5 SER B 106 ? THR B 114 ? SER B 115 THR B 123 A 6 ARG B 95 ? SER B 103 ? ARG B 104 SER B 112 A 7 LEU B 3 ? ASP B 9 ? LEU B 12 ASP B 18 A 8 SER B 14 ? PRO B 15 ? SER B 23 PRO B 24 B 1 GLU A 45 ? LEU A 46 ? GLU A 54 LEU A 55 B 2 LEU A 3 ? ASP A 9 ? LEU A 12 ASP A 18 B 3 ARG A 95 ? SER A 103 ? ARG A 104 SER A 112 B 4 SER A 106 ? THR A 114 ? SER A 115 THR A 123 B 5 SER B 106 ? THR B 114 ? SER B 115 THR B 123 B 6 ARG B 95 ? SER B 103 ? ARG B 104 SER B 112 B 7 LEU B 3 ? ASP B 9 ? LEU B 12 ASP B 18 B 8 GLU B 45 ? LEU B 46 ? GLU B 54 LEU B 55 C 1 TRP A 32 ? LYS A 39 ? TRP A 41 LYS A 48 C 2 ALA A 20 ? LYS A 26 ? ALA A 29 LYS A 35 C 3 GLY A 58 ? ILE A 64 ? GLY A 67 ILE A 73 C 4 ALA A 82 ? ALA A 88 ? ALA A 91 ALA A 97 D 1 TRP B 32 ? LYS B 39 ? TRP B 41 LYS B 48 D 2 ALA B 20 ? LYS B 26 ? ALA B 29 LYS B 35 D 3 GLY B 58 ? ILE B 64 ? GLY B 67 ILE B 73 D 4 ALA B 82 ? ALA B 88 ? ALA B 91 ALA B 97 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O SER A 14 ? O SER A 23 N ASP A 9 ? N ASP A 18 A 2 3 N LEU A 8 ? N LEU A 17 O LEU A 102 ? O LEU A 111 A 3 4 N ARG A 95 ? N ARG A 104 O THR A 114 ? O THR A 123 A 4 5 N TYR A 107 ? N TYR A 116 O THR B 109 ? O THR B 118 A 5 6 O SER B 108 ? O SER B 117 N LEU B 101 ? N LEU B 110 A 6 7 O LEU B 102 ? O LEU B 111 N LEU B 8 ? N LEU B 17 A 7 8 N ASP B 9 ? N ASP B 18 O SER B 14 ? O SER B 23 B 1 2 O LEU A 46 ? O LEU A 55 N VAL A 5 ? N VAL A 14 B 2 3 N LEU A 8 ? N LEU A 17 O LEU A 102 ? O LEU A 111 B 3 4 N ARG A 95 ? N ARG A 104 O THR A 114 ? O THR A 123 B 4 5 N TYR A 107 ? N TYR A 116 O THR B 109 ? O THR B 118 B 5 6 O SER B 108 ? O SER B 117 N LEU B 101 ? N LEU B 110 B 6 7 O LEU B 102 ? O LEU B 111 N LEU B 8 ? N LEU B 17 B 7 8 N VAL B 5 ? N VAL B 14 O LEU B 46 ? O LEU B 55 C 1 2 O ALA A 36 ? O ALA A 45 N VAL A 23 ? N VAL A 32 C 2 3 N HIS A 22 ? N HIS A 31 O GLU A 63 ? O GLU A 72 C 3 4 N ILE A 64 ? N ILE A 73 O ALA A 82 ? O ALA A 91 D 1 2 O ALA B 36 ? O ALA B 45 N VAL B 23 ? N VAL B 32 D 2 3 N HIS B 22 ? N HIS B 31 O GLU B 63 ? O GLU B 72 D 3 4 N ILE B 64 ? N ILE B 73 O ALA B 82 ? O ALA B 91 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A AGI 201 ? 13 'BINDING SITE FOR RESIDUE AGI A 201' AC2 Software A GOL 202 ? 4 'BINDING SITE FOR RESIDUE GOL A 202' AC3 Software B AGI 201 ? 15 'BINDING SITE FOR RESIDUE AGI B 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 13 LYS A 6 ? LYS A 15 . ? 1_555 ? 2 AC1 13 LYS A 6 ? LYS A 15 . ? 2_665 ? 3 AC1 13 LEU A 8 ? LEU A 17 . ? 1_555 ? 4 AC1 13 LEU A 8 ? LEU A 17 . ? 2_665 ? 5 AC1 13 LEU A 101 ? LEU A 110 . ? 2_665 ? 6 AC1 13 LEU A 101 ? LEU A 110 . ? 1_555 ? 7 AC1 13 SER A 108 ? SER A 117 . ? 1_555 ? 8 AC1 13 SER A 108 ? SER A 117 . ? 2_665 ? 9 AC1 13 HOH F . ? HOH A 312 . ? 1_555 ? 10 AC1 13 HOH F . ? HOH A 312 . ? 2_665 ? 11 AC1 13 HOH F . ? HOH A 335 . ? 2_665 ? 12 AC1 13 HOH F . ? HOH A 335 . ? 1_555 ? 13 AC1 13 HOH F . ? HOH A 381 . ? 2_665 ? 14 AC2 4 PHE A 35 ? PHE A 44 . ? 4_456 ? 15 AC2 4 GLU A 54 ? GLU A 63 . ? 4_456 ? 16 AC2 4 GLU A 57 ? GLU A 66 . ? 1_555 ? 17 AC2 4 ASP A 90 ? ASP A 99 . ? 1_555 ? 18 AC3 15 LYS B 6 ? LYS B 15 . ? 1_555 ? 19 AC3 15 LYS B 6 ? LYS B 15 . ? 2_665 ? 20 AC3 15 LEU B 8 ? LEU B 17 . ? 2_665 ? 21 AC3 15 LEU B 8 ? LEU B 17 . ? 1_555 ? 22 AC3 15 THR B 97 ? THR B 106 . ? 1_555 ? 23 AC3 15 ALA B 99 ? ALA B 108 . ? 2_665 ? 24 AC3 15 LEU B 101 ? LEU B 110 . ? 1_555 ? 25 AC3 15 LEU B 101 ? LEU B 110 . ? 2_665 ? 26 AC3 15 SER B 108 ? SER B 117 . ? 2_665 ? 27 AC3 15 SER B 108 ? SER B 117 . ? 1_555 ? 28 AC3 15 HOH G . ? HOH B 307 . ? 2_665 ? 29 AC3 15 HOH G . ? HOH B 307 . ? 1_555 ? 30 AC3 15 HOH G . ? HOH B 320 . ? 2_665 ? 31 AC3 15 HOH G . ? HOH B 320 . ? 1_555 ? 32 AC3 15 HOH G . ? HOH B 330 . ? 2_665 ? # _atom_sites.entry_id 4DER _atom_sites.fract_transf_matrix[1][1] 0.023174 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011746 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015514 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 CYS 1 10 10 CYS CYS A . n A 1 2 PRO 2 11 11 PRO PRO A . n A 1 3 LEU 3 12 12 LEU LEU A . n A 1 4 MET 4 13 13 MET MET A . n A 1 5 VAL 5 14 14 VAL VAL A . n A 1 6 LYS 6 15 15 LYS LYS A . n A 1 7 VAL 7 16 16 VAL VAL A . n A 1 8 LEU 8 17 17 LEU LEU A . n A 1 9 ASP 9 18 18 ASP ASP A . n A 1 10 ALA 10 19 19 ALA ALA A . n A 1 11 VAL 11 20 20 VAL VAL A . n A 1 12 ARG 12 21 21 ARG ARG A . n A 1 13 GLY 13 22 22 GLY GLY A . n A 1 14 SER 14 23 23 SER SER A . n A 1 15 PRO 15 24 24 PRO PRO A . n A 1 16 ALA 16 25 25 ALA ALA A . n A 1 17 ILE 17 26 26 ILE ILE A . n A 1 18 ASN 18 27 27 ASN ASN A . n A 1 19 VAL 19 28 28 VAL VAL A . n A 1 20 ALA 20 29 29 ALA ALA A . n A 1 21 VAL 21 30 30 VAL VAL A . n A 1 22 HIS 22 31 31 HIS HIS A . n A 1 23 VAL 23 32 32 VAL VAL A . n A 1 24 PHE 24 33 33 PHE PHE A . n A 1 25 ARG 25 34 34 ARG ARG A . n A 1 26 LYS 26 35 35 LYS LYS A . n A 1 27 ALA 27 36 36 ALA ALA A . n A 1 28 ALA 28 37 37 ALA ALA A . n A 1 29 ASP 29 38 38 ASP ASP A . n A 1 30 ASP 30 39 39 ASP ASP A . n A 1 31 THR 31 40 40 THR THR A . n A 1 32 TRP 32 41 41 TRP TRP A . n A 1 33 GLU 33 42 42 GLU GLU A . n A 1 34 PRO 34 43 43 PRO PRO A . n A 1 35 PHE 35 44 44 PHE PHE A . n A 1 36 ALA 36 45 45 ALA ALA A . n A 1 37 SER 37 46 46 SER SER A . n A 1 38 GLY 38 47 47 GLY GLY A . n A 1 39 LYS 39 48 48 LYS LYS A . n A 1 40 THR 40 49 49 THR THR A . n A 1 41 SER 41 50 50 SER SER A . n A 1 42 GLU 42 51 51 GLU GLU A . n A 1 43 SER 43 52 52 SER SER A . n A 1 44 GLY 44 53 53 GLY GLY A . n A 1 45 GLU 45 54 54 GLU GLU A . n A 1 46 LEU 46 55 55 LEU LEU A . n A 1 47 HIS 47 56 56 HIS HIS A . n A 1 48 GLY 48 57 57 GLY GLY A . n A 1 49 LEU 49 58 58 LEU LEU A . n A 1 50 THR 50 59 59 THR THR A . n A 1 51 THR 51 60 60 THR THR A . n A 1 52 GLU 52 61 61 GLU GLU A . n A 1 53 GLU 53 62 62 GLU GLU A . n A 1 54 GLU 54 63 63 GLU GLU A . n A 1 55 PHE 55 64 64 PHE PHE A . n A 1 56 VAL 56 65 65 VAL VAL A . n A 1 57 GLU 57 66 66 GLU GLU A . n A 1 58 GLY 58 67 67 GLY GLY A . n A 1 59 ILE 59 68 68 ILE ILE A . n A 1 60 TYR 60 69 69 TYR TYR A . n A 1 61 LYS 61 70 70 LYS LYS A . n A 1 62 VAL 62 71 71 VAL VAL A . n A 1 63 GLU 63 72 72 GLU GLU A . n A 1 64 ILE 64 73 73 ILE ILE A . n A 1 65 ASP 65 74 74 ASP ASP A . n A 1 66 THR 66 75 75 THR THR A . n A 1 67 LYS 67 76 76 LYS LYS A . n A 1 68 SER 68 77 77 SER SER A . n A 1 69 TYR 69 78 78 TYR TYR A . n A 1 70 TRP 70 79 79 TRP TRP A . n A 1 71 LYS 71 80 80 LYS LYS A . n A 1 72 ALA 72 81 81 ALA ALA A . n A 1 73 LEU 73 82 82 LEU LEU A . n A 1 74 GLY 74 83 83 GLY GLY A . n A 1 75 ILE 75 84 84 ILE ILE A . n A 1 76 SER 76 85 85 SER SER A . n A 1 77 PRO 77 86 86 PRO PRO A . n A 1 78 PHE 78 87 87 PHE PHE A . n A 1 79 HIS 79 88 88 HIS HIS A . n A 1 80 GLU 80 89 89 GLU GLU A . n A 1 81 HIS 81 90 90 HIS HIS A . n A 1 82 ALA 82 91 91 ALA ALA A . n A 1 83 GLU 83 92 92 GLU GLU A . n A 1 84 VAL 84 93 93 VAL VAL A . n A 1 85 VAL 85 94 94 VAL VAL A . n A 1 86 PHE 86 95 95 PHE PHE A . n A 1 87 THR 87 96 96 THR THR A . n A 1 88 ALA 88 97 97 ALA ALA A . n A 1 89 ASN 89 98 98 ASN ASN A . n A 1 90 ASP 90 99 99 ASP ASP A . n A 1 91 SER 91 100 100 SER SER A . n A 1 92 GLY 92 101 101 GLY GLY A . n A 1 93 PRO 93 102 102 PRO PRO A . n A 1 94 ARG 94 103 103 ARG ARG A . n A 1 95 ARG 95 104 104 ARG ARG A . n A 1 96 TYR 96 105 105 TYR TYR A . n A 1 97 THR 97 106 106 THR THR A . n A 1 98 ILE 98 107 107 ILE ILE A . n A 1 99 ALA 99 108 108 ALA ALA A . n A 1 100 ALA 100 109 109 ALA ALA A . n A 1 101 LEU 101 110 110 LEU LEU A . n A 1 102 LEU 102 111 111 LEU LEU A . n A 1 103 SER 103 112 112 SER SER A . n A 1 104 PRO 104 113 113 PRO PRO A . n A 1 105 TYR 105 114 114 TYR TYR A . n A 1 106 SER 106 115 115 SER SER A . n A 1 107 TYR 107 116 116 TYR TYR A . n A 1 108 SER 108 117 117 SER SER A . n A 1 109 THR 109 118 118 THR THR A . n A 1 110 THR 110 119 119 THR THR A . n A 1 111 ALA 111 120 120 ALA ALA A . n A 1 112 VAL 112 121 121 VAL VAL A . n A 1 113 VAL 113 122 122 VAL VAL A . n A 1 114 THR 114 123 123 THR THR A . n A 1 115 ASN 115 124 124 ASN ASN A . n A 1 116 PRO 116 125 125 PRO PRO A . n B 1 1 CYS 1 10 10 CYS CYS B . n B 1 2 PRO 2 11 11 PRO PRO B . n B 1 3 LEU 3 12 12 LEU LEU B . n B 1 4 MET 4 13 13 MET MET B . n B 1 5 VAL 5 14 14 VAL VAL B . n B 1 6 LYS 6 15 15 LYS LYS B . n B 1 7 VAL 7 16 16 VAL VAL B . n B 1 8 LEU 8 17 17 LEU LEU B . n B 1 9 ASP 9 18 18 ASP ASP B . n B 1 10 ALA 10 19 19 ALA ALA B . n B 1 11 VAL 11 20 20 VAL VAL B . n B 1 12 ARG 12 21 21 ARG ARG B . n B 1 13 GLY 13 22 22 GLY GLY B . n B 1 14 SER 14 23 23 SER SER B . n B 1 15 PRO 15 24 24 PRO PRO B . n B 1 16 ALA 16 25 25 ALA ALA B . n B 1 17 ILE 17 26 26 ILE ILE B . n B 1 18 ASN 18 27 27 ASN ASN B . n B 1 19 VAL 19 28 28 VAL VAL B . n B 1 20 ALA 20 29 29 ALA ALA B . n B 1 21 VAL 21 30 30 VAL VAL B . n B 1 22 HIS 22 31 31 HIS HIS B . n B 1 23 VAL 23 32 32 VAL VAL B . n B 1 24 PHE 24 33 33 PHE PHE B . n B 1 25 ARG 25 34 34 ARG ARG B . n B 1 26 LYS 26 35 35 LYS LYS B . n B 1 27 ALA 27 36 36 ALA ALA B . n B 1 28 ALA 28 37 37 ALA ALA B . n B 1 29 ASP 29 38 38 ASP ASP B . n B 1 30 ASP 30 39 39 ASP ASP B . n B 1 31 THR 31 40 40 THR THR B . n B 1 32 TRP 32 41 41 TRP TRP B . n B 1 33 GLU 33 42 42 GLU GLU B . n B 1 34 PRO 34 43 43 PRO PRO B . n B 1 35 PHE 35 44 44 PHE PHE B . n B 1 36 ALA 36 45 45 ALA ALA B . n B 1 37 SER 37 46 46 SER SER B . n B 1 38 GLY 38 47 47 GLY GLY B . n B 1 39 LYS 39 48 48 LYS LYS B . n B 1 40 THR 40 49 49 THR THR B . n B 1 41 SER 41 50 50 SER SER B . n B 1 42 GLU 42 51 51 GLU GLU B . n B 1 43 SER 43 52 52 SER SER B . n B 1 44 GLY 44 53 53 GLY GLY B . n B 1 45 GLU 45 54 54 GLU GLU B . n B 1 46 LEU 46 55 55 LEU LEU B . n B 1 47 HIS 47 56 56 HIS HIS B . n B 1 48 GLY 48 57 57 GLY GLY B . n B 1 49 LEU 49 58 58 LEU LEU B . n B 1 50 THR 50 59 59 THR THR B . n B 1 51 THR 51 60 60 THR THR B . n B 1 52 GLU 52 61 61 GLU GLU B . n B 1 53 GLU 53 62 62 GLU GLU B . n B 1 54 GLU 54 63 63 GLU GLU B . n B 1 55 PHE 55 64 64 PHE PHE B . n B 1 56 VAL 56 65 65 VAL VAL B . n B 1 57 GLU 57 66 66 GLU GLU B . n B 1 58 GLY 58 67 67 GLY GLY B . n B 1 59 ILE 59 68 68 ILE ILE B . n B 1 60 TYR 60 69 69 TYR TYR B . n B 1 61 LYS 61 70 70 LYS LYS B . n B 1 62 VAL 62 71 71 VAL VAL B . n B 1 63 GLU 63 72 72 GLU GLU B . n B 1 64 ILE 64 73 73 ILE ILE B . n B 1 65 ASP 65 74 74 ASP ASP B . n B 1 66 THR 66 75 75 THR THR B . n B 1 67 LYS 67 76 76 LYS LYS B . n B 1 68 SER 68 77 77 SER SER B . n B 1 69 TYR 69 78 78 TYR TYR B . n B 1 70 TRP 70 79 79 TRP TRP B . n B 1 71 LYS 71 80 80 LYS LYS B . n B 1 72 ALA 72 81 81 ALA ALA B . n B 1 73 LEU 73 82 82 LEU LEU B . n B 1 74 GLY 74 83 83 GLY GLY B . n B 1 75 ILE 75 84 84 ILE ILE B . n B 1 76 SER 76 85 85 SER SER B . n B 1 77 PRO 77 86 86 PRO PRO B . n B 1 78 PHE 78 87 87 PHE PHE B . n B 1 79 HIS 79 88 88 HIS HIS B . n B 1 80 GLU 80 89 89 GLU GLU B . n B 1 81 HIS 81 90 90 HIS HIS B . n B 1 82 ALA 82 91 91 ALA ALA B . n B 1 83 GLU 83 92 92 GLU GLU B . n B 1 84 VAL 84 93 93 VAL VAL B . n B 1 85 VAL 85 94 94 VAL VAL B . n B 1 86 PHE 86 95 95 PHE PHE B . n B 1 87 THR 87 96 96 THR THR B . n B 1 88 ALA 88 97 97 ALA ALA B . n B 1 89 ASN 89 98 98 ASN ASN B . n B 1 90 ASP 90 99 99 ASP ASP B . n B 1 91 SER 91 100 100 SER SER B . n B 1 92 GLY 92 101 101 GLY GLY B . n B 1 93 PRO 93 102 102 PRO PRO B . n B 1 94 ARG 94 103 103 ARG ARG B . n B 1 95 ARG 95 104 104 ARG ARG B . n B 1 96 TYR 96 105 105 TYR TYR B . n B 1 97 THR 97 106 106 THR THR B . n B 1 98 ILE 98 107 107 ILE ILE B . n B 1 99 ALA 99 108 108 ALA ALA B . n B 1 100 ALA 100 109 109 ALA ALA B . n B 1 101 LEU 101 110 110 LEU LEU B . n B 1 102 LEU 102 111 111 LEU LEU B . n B 1 103 SER 103 112 112 SER SER B . n B 1 104 PRO 104 113 113 PRO PRO B . n B 1 105 TYR 105 114 114 TYR TYR B . n B 1 106 SER 106 115 115 SER SER B . n B 1 107 TYR 107 116 116 TYR TYR B . n B 1 108 SER 108 117 117 SER SER B . n B 1 109 THR 109 118 118 THR THR B . n B 1 110 THR 110 119 119 THR THR B . n B 1 111 ALA 111 120 120 ALA ALA B . n B 1 112 VAL 112 121 121 VAL VAL B . n B 1 113 VAL 113 122 122 VAL VAL B . n B 1 114 THR 114 123 123 THR THR B . n B 1 115 ASN 115 124 124 ASN ASN B . n B 1 116 PRO 116 125 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AGI 1 201 1 AGI AGI A . D 3 GOL 1 202 1 GOL GOL A . E 2 AGI 1 201 1 AGI AGI B . F 4 HOH 1 301 2 HOH HOH A . F 4 HOH 2 302 3 HOH HOH A . F 4 HOH 3 303 5 HOH HOH A . F 4 HOH 4 304 6 HOH HOH A . F 4 HOH 5 305 11 HOH HOH A . F 4 HOH 6 306 12 HOH HOH A . F 4 HOH 7 307 13 HOH HOH A . F 4 HOH 8 308 14 HOH HOH A . F 4 HOH 9 309 16 HOH HOH A . F 4 HOH 10 310 17 HOH HOH A . F 4 HOH 11 311 21 HOH HOH A . F 4 HOH 12 312 23 HOH HOH A . F 4 HOH 13 313 24 HOH HOH A . F 4 HOH 14 314 26 HOH HOH A . F 4 HOH 15 315 27 HOH HOH A . F 4 HOH 16 316 28 HOH HOH A . F 4 HOH 17 317 29 HOH HOH A . F 4 HOH 18 318 30 HOH HOH A . F 4 HOH 19 319 31 HOH HOH A . F 4 HOH 20 320 32 HOH HOH A . F 4 HOH 21 321 36 HOH HOH A . F 4 HOH 22 322 38 HOH HOH A . F 4 HOH 23 323 41 HOH HOH A . F 4 HOH 24 324 42 HOH HOH A . F 4 HOH 25 325 43 HOH HOH A . F 4 HOH 26 326 44 HOH HOH A . F 4 HOH 27 327 45 HOH HOH A . F 4 HOH 28 328 46 HOH HOH A . F 4 HOH 29 329 47 HOH HOH A . F 4 HOH 30 330 48 HOH HOH A . F 4 HOH 31 331 49 HOH HOH A . F 4 HOH 32 332 52 HOH HOH A . F 4 HOH 33 333 53 HOH HOH A . F 4 HOH 34 334 55 HOH HOH A . F 4 HOH 35 335 56 HOH HOH A . F 4 HOH 36 336 59 HOH HOH A . F 4 HOH 37 337 61 HOH HOH A . F 4 HOH 38 338 63 HOH HOH A . F 4 HOH 39 339 64 HOH HOH A . F 4 HOH 40 340 66 HOH HOH A . F 4 HOH 41 341 67 HOH HOH A . F 4 HOH 42 342 69 HOH HOH A . F 4 HOH 43 343 70 HOH HOH A . F 4 HOH 44 344 71 HOH HOH A . F 4 HOH 45 345 73 HOH HOH A . F 4 HOH 46 346 74 HOH HOH A . F 4 HOH 47 347 75 HOH HOH A . F 4 HOH 48 348 76 HOH HOH A . F 4 HOH 49 349 77 HOH HOH A . F 4 HOH 50 350 80 HOH HOH A . F 4 HOH 51 351 82 HOH HOH A . F 4 HOH 52 352 83 HOH HOH A . F 4 HOH 53 353 85 HOH HOH A . F 4 HOH 54 354 89 HOH HOH A . F 4 HOH 55 355 90 HOH HOH A . F 4 HOH 56 356 91 HOH HOH A . F 4 HOH 57 357 94 HOH HOH A . F 4 HOH 58 358 95 HOH HOH A . F 4 HOH 59 359 96 HOH HOH A . F 4 HOH 60 360 97 HOH HOH A . F 4 HOH 61 361 100 HOH HOH A . F 4 HOH 62 362 101 HOH HOH A . F 4 HOH 63 363 102 HOH HOH A . F 4 HOH 64 364 103 HOH HOH A . F 4 HOH 65 365 108 HOH HOH A . F 4 HOH 66 366 109 HOH HOH A . F 4 HOH 67 367 110 HOH HOH A . F 4 HOH 68 368 112 HOH HOH A . F 4 HOH 69 369 113 HOH HOH A . F 4 HOH 70 370 117 HOH HOH A . F 4 HOH 71 371 118 HOH HOH A . F 4 HOH 72 372 123 HOH HOH A . F 4 HOH 73 373 124 HOH HOH A . F 4 HOH 74 374 128 HOH HOH A . F 4 HOH 75 375 139 HOH HOH A . F 4 HOH 76 376 142 HOH HOH A . F 4 HOH 77 377 144 HOH HOH A . F 4 HOH 78 378 145 HOH HOH A . F 4 HOH 79 379 147 HOH HOH A . F 4 HOH 80 380 152 HOH HOH A . F 4 HOH 81 381 154 HOH HOH A . G 4 HOH 1 301 1 HOH HOH B . G 4 HOH 2 302 4 HOH HOH B . G 4 HOH 3 303 7 HOH HOH B . G 4 HOH 4 304 8 HOH HOH B . G 4 HOH 5 305 9 HOH HOH B . G 4 HOH 6 306 15 HOH HOH B . G 4 HOH 7 307 18 HOH HOH B . G 4 HOH 8 308 20 HOH HOH B . G 4 HOH 9 309 22 HOH HOH B . G 4 HOH 10 310 25 HOH HOH B . G 4 HOH 11 311 33 HOH HOH B . G 4 HOH 12 312 34 HOH HOH B . G 4 HOH 13 313 37 HOH HOH B . G 4 HOH 14 314 39 HOH HOH B . G 4 HOH 15 315 40 HOH HOH B . G 4 HOH 16 316 50 HOH HOH B . G 4 HOH 17 317 51 HOH HOH B . G 4 HOH 18 318 54 HOH HOH B . G 4 HOH 19 319 57 HOH HOH B . G 4 HOH 20 320 58 HOH HOH B . G 4 HOH 21 321 60 HOH HOH B . G 4 HOH 22 322 65 HOH HOH B . G 4 HOH 23 323 68 HOH HOH B . G 4 HOH 24 324 72 HOH HOH B . G 4 HOH 25 325 79 HOH HOH B . G 4 HOH 26 326 81 HOH HOH B . G 4 HOH 27 327 88 HOH HOH B . G 4 HOH 28 328 93 HOH HOH B . G 4 HOH 29 329 98 HOH HOH B . G 4 HOH 30 330 99 HOH HOH B . G 4 HOH 31 331 104 HOH HOH B . G 4 HOH 32 332 106 HOH HOH B . G 4 HOH 33 333 107 HOH HOH B . G 4 HOH 34 334 111 HOH HOH B . G 4 HOH 35 335 114 HOH HOH B . G 4 HOH 36 336 115 HOH HOH B . G 4 HOH 37 337 116 HOH HOH B . G 4 HOH 38 338 133 HOH HOH B . G 4 HOH 39 339 143 HOH HOH B . G 4 HOH 40 340 146 HOH HOH B . G 4 HOH 41 341 150 HOH HOH B . G 4 HOH 42 342 151 HOH HOH B . G 4 HOH 43 343 153 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6190 ? 1 MORE -48 ? 1 'SSA (A^2)' 19200 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1.0000000000 0.0000000000 0.0000000000 43.1520000000 0.0000000000 -1.0000000000 0.0000000000 85.1320000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A AGI 201 ? C AGI . 2 1 A AGI 201 ? C AGI . 3 1 A AGI 201 ? C AGI . 4 1 A AGI 201 ? C AGI . 5 1 A AGI 201 ? C AGI . 6 1 B AGI 201 ? E AGI . 7 1 B AGI 201 ? E AGI . 8 1 B AGI 201 ? E AGI . 9 1 B AGI 201 ? E AGI . 10 1 B AGI 201 ? E AGI . 11 1 B AGI 201 ? E AGI . 12 1 A HOH 335 ? F HOH . 13 1 B HOH 320 ? G HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-11-21 2 'Structure model' 1 1 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_initial_refinement_model 5 2 'Structure model' pdbx_struct_special_symmetry 6 2 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 2 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 2 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 2 REFMAC 5.5.0102 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 3 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 MAR345dtb . ? ? ? ? 'data collection' ? ? ? 5 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 6 PHASER . ? ? ? ? phasing ? ? ? # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 104 ? NE ? A ARG 95 NE 2 1 Y 1 A ARG 104 ? CZ ? A ARG 95 CZ 3 1 Y 1 A ARG 104 ? NH1 ? A ARG 95 NH1 4 1 Y 1 A ARG 104 ? NH2 ? A ARG 95 NH2 5 1 Y 1 B GLU 61 ? CD ? B GLU 52 CD 6 1 Y 1 B GLU 61 ? OE1 ? B GLU 52 OE1 7 1 Y 1 B GLU 61 ? OE2 ? B GLU 52 OE2 8 1 Y 0 B ARG 104 ? CD ? B ARG 95 CD 9 1 Y 0 B ARG 104 ? NE ? B ARG 95 NE 10 1 Y 0 B ARG 104 ? CZ ? B ARG 95 CZ 11 1 Y 0 B ARG 104 ? NH1 ? B ARG 95 NH1 12 1 Y 0 B ARG 104 ? NH2 ? B ARG 95 NH2 # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id B _pdbx_unobs_or_zero_occ_residues.auth_comp_id PRO _pdbx_unobs_or_zero_occ_residues.auth_seq_id 125 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id B _pdbx_unobs_or_zero_occ_residues.label_comp_id PRO _pdbx_unobs_or_zero_occ_residues.label_seq_id 116 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal AGI CAG C Y N 1 AGI CAE C Y N 2 AGI CAM C Y N 3 AGI OAB O N N 4 AGI CAF C Y N 5 AGI CAH C Y N 6 AGI CAP C Y N 7 AGI CAQ C N N 8 AGI OAL O N N 9 AGI CAJ C N N 10 AGI CAR C N N 11 AGI OAA O N N 12 AGI CAT C Y N 13 AGI CAS C Y N 14 AGI CAK C Y N 15 AGI CAN C Y N 16 AGI OAC O N N 17 AGI CAI C Y N 18 AGI CAO C Y N 19 AGI OAD O N N 20 AGI HAG H N N 21 AGI HAE H N N 22 AGI HOAB H N N 23 AGI HAF H N N 24 AGI HAH H N N 25 AGI HAJ H N N 26 AGI HAK H N N 27 AGI HOAC H N N 28 AGI HAI H N N 29 AGI HOAD H N N 30 ALA N N N N 31 ALA CA C N S 32 ALA C C N N 33 ALA O O N N 34 ALA CB C N N 35 ALA OXT O N N 36 ALA H H N N 37 ALA H2 H N N 38 ALA HA H N N 39 ALA HB1 H N N 40 ALA HB2 H N N 41 ALA HB3 H N N 42 ALA HXT H N N 43 ARG N N N N 44 ARG CA C N S 45 ARG C C N N 46 ARG O O N N 47 ARG CB C N N 48 ARG CG C N N 49 ARG CD C N N 50 ARG NE N N N 51 ARG CZ C N N 52 ARG NH1 N N N 53 ARG NH2 N N N 54 ARG OXT O N N 55 ARG H H N N 56 ARG H2 H N N 57 ARG HA H N N 58 ARG HB2 H N N 59 ARG HB3 H N N 60 ARG HG2 H N N 61 ARG HG3 H N N 62 ARG HD2 H N N 63 ARG HD3 H N N 64 ARG HE H N N 65 ARG HH11 H N N 66 ARG HH12 H N N 67 ARG HH21 H N N 68 ARG HH22 H N N 69 ARG HXT H N N 70 ASN N N N N 71 ASN CA C N S 72 ASN C C N N 73 ASN O O N N 74 ASN CB C N N 75 ASN CG C N N 76 ASN OD1 O N N 77 ASN ND2 N N N 78 ASN OXT O N N 79 ASN H H N N 80 ASN H2 H N N 81 ASN HA H N N 82 ASN HB2 H N N 83 ASN HB3 H N N 84 ASN HD21 H N N 85 ASN HD22 H N N 86 ASN HXT H N N 87 ASP N N N N 88 ASP CA C N S 89 ASP C C N N 90 ASP O O N N 91 ASP CB C N N 92 ASP CG C N N 93 ASP OD1 O N N 94 ASP OD2 O N N 95 ASP OXT O N N 96 ASP H H N N 97 ASP H2 H N N 98 ASP HA H N N 99 ASP HB2 H N N 100 ASP HB3 H N N 101 ASP HD2 H N N 102 ASP HXT H N N 103 CYS N N N N 104 CYS CA C N R 105 CYS C C N N 106 CYS O O N N 107 CYS CB C N N 108 CYS SG S N N 109 CYS OXT O N N 110 CYS H H N N 111 CYS H2 H N N 112 CYS HA H N N 113 CYS HB2 H N N 114 CYS HB3 H N N 115 CYS HG H N N 116 CYS HXT H N N 117 GLU N N N N 118 GLU CA C N S 119 GLU C C N N 120 GLU O O N N 121 GLU CB C N N 122 GLU CG C N N 123 GLU CD C N N 124 GLU OE1 O N N 125 GLU OE2 O N N 126 GLU OXT O N N 127 GLU H H N N 128 GLU H2 H N N 129 GLU HA H N N 130 GLU HB2 H N N 131 GLU HB3 H N N 132 GLU HG2 H N N 133 GLU HG3 H N N 134 GLU HE2 H N N 135 GLU HXT H N N 136 GLY N N N N 137 GLY CA C N N 138 GLY C C N N 139 GLY O O N N 140 GLY OXT O N N 141 GLY H H N N 142 GLY H2 H N N 143 GLY HA2 H N N 144 GLY HA3 H N N 145 GLY HXT H N N 146 GOL C1 C N N 147 GOL O1 O N N 148 GOL C2 C N N 149 GOL O2 O N N 150 GOL C3 C N N 151 GOL O3 O N N 152 GOL H11 H N N 153 GOL H12 H N N 154 GOL HO1 H N N 155 GOL H2 H N N 156 GOL HO2 H N N 157 GOL H31 H N N 158 GOL H32 H N N 159 GOL HO3 H N N 160 HIS N N N N 161 HIS CA C N S 162 HIS C C N N 163 HIS O O N N 164 HIS CB C N N 165 HIS CG C Y N 166 HIS ND1 N Y N 167 HIS CD2 C Y N 168 HIS CE1 C Y N 169 HIS NE2 N Y N 170 HIS OXT O N N 171 HIS H H N N 172 HIS H2 H N N 173 HIS HA H N N 174 HIS HB2 H N N 175 HIS HB3 H N N 176 HIS HD1 H N N 177 HIS HD2 H N N 178 HIS HE1 H N N 179 HIS HE2 H N N 180 HIS HXT H N N 181 HOH O O N N 182 HOH H1 H N N 183 HOH H2 H N N 184 ILE N N N N 185 ILE CA C N S 186 ILE C C N N 187 ILE O O N N 188 ILE CB C N S 189 ILE CG1 C N N 190 ILE CG2 C N N 191 ILE CD1 C N N 192 ILE OXT O N N 193 ILE H H N N 194 ILE H2 H N N 195 ILE HA H N N 196 ILE HB H N N 197 ILE HG12 H N N 198 ILE HG13 H N N 199 ILE HG21 H N N 200 ILE HG22 H N N 201 ILE HG23 H N N 202 ILE HD11 H N N 203 ILE HD12 H N N 204 ILE HD13 H N N 205 ILE HXT H N N 206 LEU N N N N 207 LEU CA C N S 208 LEU C C N N 209 LEU O O N N 210 LEU CB C N N 211 LEU CG C N N 212 LEU CD1 C N N 213 LEU CD2 C N N 214 LEU OXT O N N 215 LEU H H N N 216 LEU H2 H N N 217 LEU HA H N N 218 LEU HB2 H N N 219 LEU HB3 H N N 220 LEU HG H N N 221 LEU HD11 H N N 222 LEU HD12 H N N 223 LEU HD13 H N N 224 LEU HD21 H N N 225 LEU HD22 H N N 226 LEU HD23 H N N 227 LEU HXT H N N 228 LYS N N N N 229 LYS CA C N S 230 LYS C C N N 231 LYS O O N N 232 LYS CB C N N 233 LYS CG C N N 234 LYS CD C N N 235 LYS CE C N N 236 LYS NZ N N N 237 LYS OXT O N N 238 LYS H H N N 239 LYS H2 H N N 240 LYS HA H N N 241 LYS HB2 H N N 242 LYS HB3 H N N 243 LYS HG2 H N N 244 LYS HG3 H N N 245 LYS HD2 H N N 246 LYS HD3 H N N 247 LYS HE2 H N N 248 LYS HE3 H N N 249 LYS HZ1 H N N 250 LYS HZ2 H N N 251 LYS HZ3 H N N 252 LYS HXT H N N 253 MET N N N N 254 MET CA C N S 255 MET C C N N 256 MET O O N N 257 MET CB C N N 258 MET CG C N N 259 MET SD S N N 260 MET CE C N N 261 MET OXT O N N 262 MET H H N N 263 MET H2 H N N 264 MET HA H N N 265 MET HB2 H N N 266 MET HB3 H N N 267 MET HG2 H N N 268 MET HG3 H N N 269 MET HE1 H N N 270 MET HE2 H N N 271 MET HE3 H N N 272 MET HXT H N N 273 PHE N N N N 274 PHE CA C N S 275 PHE C C N N 276 PHE O O N N 277 PHE CB C N N 278 PHE CG C Y N 279 PHE CD1 C Y N 280 PHE CD2 C Y N 281 PHE CE1 C Y N 282 PHE CE2 C Y N 283 PHE CZ C Y N 284 PHE OXT O N N 285 PHE H H N N 286 PHE H2 H N N 287 PHE HA H N N 288 PHE HB2 H N N 289 PHE HB3 H N N 290 PHE HD1 H N N 291 PHE HD2 H N N 292 PHE HE1 H N N 293 PHE HE2 H N N 294 PHE HZ H N N 295 PHE HXT H N N 296 PRO N N N N 297 PRO CA C N S 298 PRO C C N N 299 PRO O O N N 300 PRO CB C N N 301 PRO CG C N N 302 PRO CD C N N 303 PRO OXT O N N 304 PRO H H N N 305 PRO HA H N N 306 PRO HB2 H N N 307 PRO HB3 H N N 308 PRO HG2 H N N 309 PRO HG3 H N N 310 PRO HD2 H N N 311 PRO HD3 H N N 312 PRO HXT H N N 313 SER N N N N 314 SER CA C N S 315 SER C C N N 316 SER O O N N 317 SER CB C N N 318 SER OG O N N 319 SER OXT O N N 320 SER H H N N 321 SER H2 H N N 322 SER HA H N N 323 SER HB2 H N N 324 SER HB3 H N N 325 SER HG H N N 326 SER HXT H N N 327 THR N N N N 328 THR CA C N S 329 THR C C N N 330 THR O O N N 331 THR CB C N R 332 THR OG1 O N N 333 THR CG2 C N N 334 THR OXT O N N 335 THR H H N N 336 THR H2 H N N 337 THR HA H N N 338 THR HB H N N 339 THR HG1 H N N 340 THR HG21 H N N 341 THR HG22 H N N 342 THR HG23 H N N 343 THR HXT H N N 344 TRP N N N N 345 TRP CA C N S 346 TRP C C N N 347 TRP O O N N 348 TRP CB C N N 349 TRP CG C Y N 350 TRP CD1 C Y N 351 TRP CD2 C Y N 352 TRP NE1 N Y N 353 TRP CE2 C Y N 354 TRP CE3 C Y N 355 TRP CZ2 C Y N 356 TRP CZ3 C Y N 357 TRP CH2 C Y N 358 TRP OXT O N N 359 TRP H H N N 360 TRP H2 H N N 361 TRP HA H N N 362 TRP HB2 H N N 363 TRP HB3 H N N 364 TRP HD1 H N N 365 TRP HE1 H N N 366 TRP HE3 H N N 367 TRP HZ2 H N N 368 TRP HZ3 H N N 369 TRP HH2 H N N 370 TRP HXT H N N 371 TYR N N N N 372 TYR CA C N S 373 TYR C C N N 374 TYR O O N N 375 TYR CB C N N 376 TYR CG C Y N 377 TYR CD1 C Y N 378 TYR CD2 C Y N 379 TYR CE1 C Y N 380 TYR CE2 C Y N 381 TYR CZ C Y N 382 TYR OH O N N 383 TYR OXT O N N 384 TYR H H N N 385 TYR H2 H N N 386 TYR HA H N N 387 TYR HB2 H N N 388 TYR HB3 H N N 389 TYR HD1 H N N 390 TYR HD2 H N N 391 TYR HE1 H N N 392 TYR HE2 H N N 393 TYR HH H N N 394 TYR HXT H N N 395 VAL N N N N 396 VAL CA C N S 397 VAL C C N N 398 VAL O O N N 399 VAL CB C N N 400 VAL CG1 C N N 401 VAL CG2 C N N 402 VAL OXT O N N 403 VAL H H N N 404 VAL H2 H N N 405 VAL HA H N N 406 VAL HB H N N 407 VAL HG11 H N N 408 VAL HG12 H N N 409 VAL HG13 H N N 410 VAL HG21 H N N 411 VAL HG22 H N N 412 VAL HG23 H N N 413 VAL HXT H N N 414 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal AGI CAG CAE doub Y N 1 AGI CAG CAP sing Y N 2 AGI CAE CAM sing Y N 3 AGI CAM OAB sing N N 4 AGI CAM CAF doub Y N 5 AGI CAF CAH sing Y N 6 AGI CAH CAP doub Y N 7 AGI CAP CAQ sing N N 8 AGI CAQ OAL sing N N 9 AGI CAQ CAJ doub N N 10 AGI OAL CAS sing N N 11 AGI CAJ CAR sing N N 12 AGI CAR OAA doub N N 13 AGI CAR CAT sing N N 14 AGI CAT CAS doub Y N 15 AGI CAT CAO sing Y N 16 AGI CAS CAK sing Y N 17 AGI CAK CAN doub Y N 18 AGI CAN OAC sing N N 19 AGI CAN CAI sing Y N 20 AGI CAI CAO doub Y N 21 AGI CAO OAD sing N N 22 AGI CAG HAG sing N N 23 AGI CAE HAE sing N N 24 AGI OAB HOAB sing N N 25 AGI CAF HAF sing N N 26 AGI CAH HAH sing N N 27 AGI CAJ HAJ sing N N 28 AGI CAK HAK sing N N 29 AGI OAC HOAC sing N N 30 AGI CAI HAI sing N N 31 AGI OAD HOAD sing N N 32 ALA N CA sing N N 33 ALA N H sing N N 34 ALA N H2 sing N N 35 ALA CA C sing N N 36 ALA CA CB sing N N 37 ALA CA HA sing N N 38 ALA C O doub N N 39 ALA C OXT sing N N 40 ALA CB HB1 sing N N 41 ALA CB HB2 sing N N 42 ALA CB HB3 sing N N 43 ALA OXT HXT sing N N 44 ARG N CA sing N N 45 ARG N H sing N N 46 ARG N H2 sing N N 47 ARG CA C sing N N 48 ARG CA CB sing N N 49 ARG CA HA sing N N 50 ARG C O doub N N 51 ARG C OXT sing N N 52 ARG CB CG sing N N 53 ARG CB HB2 sing N N 54 ARG CB HB3 sing N N 55 ARG CG CD sing N N 56 ARG CG HG2 sing N N 57 ARG CG HG3 sing N N 58 ARG CD NE sing N N 59 ARG CD HD2 sing N N 60 ARG CD HD3 sing N N 61 ARG NE CZ sing N N 62 ARG NE HE sing N N 63 ARG CZ NH1 sing N N 64 ARG CZ NH2 doub N N 65 ARG NH1 HH11 sing N N 66 ARG NH1 HH12 sing N N 67 ARG NH2 HH21 sing N N 68 ARG NH2 HH22 sing N N 69 ARG OXT HXT sing N N 70 ASN N CA sing N N 71 ASN N H sing N N 72 ASN N H2 sing N N 73 ASN CA C sing N N 74 ASN CA CB sing N N 75 ASN CA HA sing N N 76 ASN C O doub N N 77 ASN C OXT sing N N 78 ASN CB CG sing N N 79 ASN CB HB2 sing N N 80 ASN CB HB3 sing N N 81 ASN CG OD1 doub N N 82 ASN CG ND2 sing N N 83 ASN ND2 HD21 sing N N 84 ASN ND2 HD22 sing N N 85 ASN OXT HXT sing N N 86 ASP N CA sing N N 87 ASP N H sing N N 88 ASP N H2 sing N N 89 ASP CA C sing N N 90 ASP CA CB sing N N 91 ASP CA HA sing N N 92 ASP C O doub N N 93 ASP C OXT sing N N 94 ASP CB CG sing N N 95 ASP CB HB2 sing N N 96 ASP CB HB3 sing N N 97 ASP CG OD1 doub N N 98 ASP CG OD2 sing N N 99 ASP OD2 HD2 sing N N 100 ASP OXT HXT sing N N 101 CYS N CA sing N N 102 CYS N H sing N N 103 CYS N H2 sing N N 104 CYS CA C sing N N 105 CYS CA CB sing N N 106 CYS CA HA sing N N 107 CYS C O doub N N 108 CYS C OXT sing N N 109 CYS CB SG sing N N 110 CYS CB HB2 sing N N 111 CYS CB HB3 sing N N 112 CYS SG HG sing N N 113 CYS OXT HXT sing N N 114 GLU N CA sing N N 115 GLU N H sing N N 116 GLU N H2 sing N N 117 GLU CA C sing N N 118 GLU CA CB sing N N 119 GLU CA HA sing N N 120 GLU C O doub N N 121 GLU C OXT sing N N 122 GLU CB CG sing N N 123 GLU CB HB2 sing N N 124 GLU CB HB3 sing N N 125 GLU CG CD sing N N 126 GLU CG HG2 sing N N 127 GLU CG HG3 sing N N 128 GLU CD OE1 doub N N 129 GLU CD OE2 sing N N 130 GLU OE2 HE2 sing N N 131 GLU OXT HXT sing N N 132 GLY N CA sing N N 133 GLY N H sing N N 134 GLY N H2 sing N N 135 GLY CA C sing N N 136 GLY CA HA2 sing N N 137 GLY CA HA3 sing N N 138 GLY C O doub N N 139 GLY C OXT sing N N 140 GLY OXT HXT sing N N 141 GOL C1 O1 sing N N 142 GOL C1 C2 sing N N 143 GOL C1 H11 sing N N 144 GOL C1 H12 sing N N 145 GOL O1 HO1 sing N N 146 GOL C2 O2 sing N N 147 GOL C2 C3 sing N N 148 GOL C2 H2 sing N N 149 GOL O2 HO2 sing N N 150 GOL C3 O3 sing N N 151 GOL C3 H31 sing N N 152 GOL C3 H32 sing N N 153 GOL O3 HO3 sing N N 154 HIS N CA sing N N 155 HIS N H sing N N 156 HIS N H2 sing N N 157 HIS CA C sing N N 158 HIS CA CB sing N N 159 HIS CA HA sing N N 160 HIS C O doub N N 161 HIS C OXT sing N N 162 HIS CB CG sing N N 163 HIS CB HB2 sing N N 164 HIS CB HB3 sing N N 165 HIS CG ND1 sing Y N 166 HIS CG CD2 doub Y N 167 HIS ND1 CE1 doub Y N 168 HIS ND1 HD1 sing N N 169 HIS CD2 NE2 sing Y N 170 HIS CD2 HD2 sing N N 171 HIS CE1 NE2 sing Y N 172 HIS CE1 HE1 sing N N 173 HIS NE2 HE2 sing N N 174 HIS OXT HXT sing N N 175 HOH O H1 sing N N 176 HOH O H2 sing N N 177 ILE N CA sing N N 178 ILE N H sing N N 179 ILE N H2 sing N N 180 ILE CA C sing N N 181 ILE CA CB sing N N 182 ILE CA HA sing N N 183 ILE C O doub N N 184 ILE C OXT sing N N 185 ILE CB CG1 sing N N 186 ILE CB CG2 sing N N 187 ILE CB HB sing N N 188 ILE CG1 CD1 sing N N 189 ILE CG1 HG12 sing N N 190 ILE CG1 HG13 sing N N 191 ILE CG2 HG21 sing N N 192 ILE CG2 HG22 sing N N 193 ILE CG2 HG23 sing N N 194 ILE CD1 HD11 sing N N 195 ILE CD1 HD12 sing N N 196 ILE CD1 HD13 sing N N 197 ILE OXT HXT sing N N 198 LEU N CA sing N N 199 LEU N H sing N N 200 LEU N H2 sing N N 201 LEU CA C sing N N 202 LEU CA CB sing N N 203 LEU CA HA sing N N 204 LEU C O doub N N 205 LEU C OXT sing N N 206 LEU CB CG sing N N 207 LEU CB HB2 sing N N 208 LEU CB HB3 sing N N 209 LEU CG CD1 sing N N 210 LEU CG CD2 sing N N 211 LEU CG HG sing N N 212 LEU CD1 HD11 sing N N 213 LEU CD1 HD12 sing N N 214 LEU CD1 HD13 sing N N 215 LEU CD2 HD21 sing N N 216 LEU CD2 HD22 sing N N 217 LEU CD2 HD23 sing N N 218 LEU OXT HXT sing N N 219 LYS N CA sing N N 220 LYS N H sing N N 221 LYS N H2 sing N N 222 LYS CA C sing N N 223 LYS CA CB sing N N 224 LYS CA HA sing N N 225 LYS C O doub N N 226 LYS C OXT sing N N 227 LYS CB CG sing N N 228 LYS CB HB2 sing N N 229 LYS CB HB3 sing N N 230 LYS CG CD sing N N 231 LYS CG HG2 sing N N 232 LYS CG HG3 sing N N 233 LYS CD CE sing N N 234 LYS CD HD2 sing N N 235 LYS CD HD3 sing N N 236 LYS CE NZ sing N N 237 LYS CE HE2 sing N N 238 LYS CE HE3 sing N N 239 LYS NZ HZ1 sing N N 240 LYS NZ HZ2 sing N N 241 LYS NZ HZ3 sing N N 242 LYS OXT HXT sing N N 243 MET N CA sing N N 244 MET N H sing N N 245 MET N H2 sing N N 246 MET CA C sing N N 247 MET CA CB sing N N 248 MET CA HA sing N N 249 MET C O doub N N 250 MET C OXT sing N N 251 MET CB CG sing N N 252 MET CB HB2 sing N N 253 MET CB HB3 sing N N 254 MET CG SD sing N N 255 MET CG HG2 sing N N 256 MET CG HG3 sing N N 257 MET SD CE sing N N 258 MET CE HE1 sing N N 259 MET CE HE2 sing N N 260 MET CE HE3 sing N N 261 MET OXT HXT sing N N 262 PHE N CA sing N N 263 PHE N H sing N N 264 PHE N H2 sing N N 265 PHE CA C sing N N 266 PHE CA CB sing N N 267 PHE CA HA sing N N 268 PHE C O doub N N 269 PHE C OXT sing N N 270 PHE CB CG sing N N 271 PHE CB HB2 sing N N 272 PHE CB HB3 sing N N 273 PHE CG CD1 doub Y N 274 PHE CG CD2 sing Y N 275 PHE CD1 CE1 sing Y N 276 PHE CD1 HD1 sing N N 277 PHE CD2 CE2 doub Y N 278 PHE CD2 HD2 sing N N 279 PHE CE1 CZ doub Y N 280 PHE CE1 HE1 sing N N 281 PHE CE2 CZ sing Y N 282 PHE CE2 HE2 sing N N 283 PHE CZ HZ sing N N 284 PHE OXT HXT sing N N 285 PRO N CA sing N N 286 PRO N CD sing N N 287 PRO N H sing N N 288 PRO CA C sing N N 289 PRO CA CB sing N N 290 PRO CA HA sing N N 291 PRO C O doub N N 292 PRO C OXT sing N N 293 PRO CB CG sing N N 294 PRO CB HB2 sing N N 295 PRO CB HB3 sing N N 296 PRO CG CD sing N N 297 PRO CG HG2 sing N N 298 PRO CG HG3 sing N N 299 PRO CD HD2 sing N N 300 PRO CD HD3 sing N N 301 PRO OXT HXT sing N N 302 SER N CA sing N N 303 SER N H sing N N 304 SER N H2 sing N N 305 SER CA C sing N N 306 SER CA CB sing N N 307 SER CA HA sing N N 308 SER C O doub N N 309 SER C OXT sing N N 310 SER CB OG sing N N 311 SER CB HB2 sing N N 312 SER CB HB3 sing N N 313 SER OG HG sing N N 314 SER OXT HXT sing N N 315 THR N CA sing N N 316 THR N H sing N N 317 THR N H2 sing N N 318 THR CA C sing N N 319 THR CA CB sing N N 320 THR CA HA sing N N 321 THR C O doub N N 322 THR C OXT sing N N 323 THR CB OG1 sing N N 324 THR CB CG2 sing N N 325 THR CB HB sing N N 326 THR OG1 HG1 sing N N 327 THR CG2 HG21 sing N N 328 THR CG2 HG22 sing N N 329 THR CG2 HG23 sing N N 330 THR OXT HXT sing N N 331 TRP N CA sing N N 332 TRP N H sing N N 333 TRP N H2 sing N N 334 TRP CA C sing N N 335 TRP CA CB sing N N 336 TRP CA HA sing N N 337 TRP C O doub N N 338 TRP C OXT sing N N 339 TRP CB CG sing N N 340 TRP CB HB2 sing N N 341 TRP CB HB3 sing N N 342 TRP CG CD1 doub Y N 343 TRP CG CD2 sing Y N 344 TRP CD1 NE1 sing Y N 345 TRP CD1 HD1 sing N N 346 TRP CD2 CE2 doub Y N 347 TRP CD2 CE3 sing Y N 348 TRP NE1 CE2 sing Y N 349 TRP NE1 HE1 sing N N 350 TRP CE2 CZ2 sing Y N 351 TRP CE3 CZ3 doub Y N 352 TRP CE3 HE3 sing N N 353 TRP CZ2 CH2 doub Y N 354 TRP CZ2 HZ2 sing N N 355 TRP CZ3 CH2 sing Y N 356 TRP CZ3 HZ3 sing N N 357 TRP CH2 HH2 sing N N 358 TRP OXT HXT sing N N 359 TYR N CA sing N N 360 TYR N H sing N N 361 TYR N H2 sing N N 362 TYR CA C sing N N 363 TYR CA CB sing N N 364 TYR CA HA sing N N 365 TYR C O doub N N 366 TYR C OXT sing N N 367 TYR CB CG sing N N 368 TYR CB HB2 sing N N 369 TYR CB HB3 sing N N 370 TYR CG CD1 doub Y N 371 TYR CG CD2 sing Y N 372 TYR CD1 CE1 sing Y N 373 TYR CD1 HD1 sing N N 374 TYR CD2 CE2 doub Y N 375 TYR CD2 HD2 sing N N 376 TYR CE1 CZ doub Y N 377 TYR CE1 HE1 sing N N 378 TYR CE2 CZ sing Y N 379 TYR CE2 HE2 sing N N 380 TYR CZ OH sing N N 381 TYR OH HH sing N N 382 TYR OXT HXT sing N N 383 VAL N CA sing N N 384 VAL N H sing N N 385 VAL N H2 sing N N 386 VAL CA C sing N N 387 VAL CA CB sing N N 388 VAL CA HA sing N N 389 VAL C O doub N N 390 VAL C OXT sing N N 391 VAL CB CG1 sing N N 392 VAL CB CG2 sing N N 393 VAL CB HB sing N N 394 VAL CG1 HG11 sing N N 395 VAL CG1 HG12 sing N N 396 VAL CG1 HG13 sing N N 397 VAL CG2 HG21 sing N N 398 VAL CG2 HG22 sing N N 399 VAL CG2 HG23 sing N N 400 VAL OXT HXT sing N N 401 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '5,7-dihydroxy-2-(4-hydroxyphenyl)-4H-chromen-4-one' AGI 3 GLYCEROL GOL 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3CFM _pdbx_initial_refinement_model.details 'PDB ENTRY 3CFM' #