HEADER SPLICING 26-JAN-12 4DGW TITLE CRYSTAL STRUCTURE OF THE SF3A SPLICING FACTOR COMPLEX OF U2 SNRNP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRE-MRNA-SPLICING FACTOR PRP9; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN, UNP RESIDUES 1-389; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PRE-MRNA-SPLICING FACTOR PRP21; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: MIDDLE DOMAIN, UNP RESIDUES 87-237; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: PRE-MRNA-SPLICING FACTOR PRP11; COMPND 13 CHAIN: C; COMPND 14 FRAGMENT: C-TERMINAL DOMAIN, UNP RESIDUES 50-266; COMPND 15 ENGINEERED: YES; COMPND 16 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: S288C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 10 ORGANISM_COMMON: YEAST; SOURCE 11 ORGANISM_TAXID: 559292; SOURCE 12 STRAIN: S288C; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 17 ORGANISM_COMMON: YEAST; SOURCE 18 ORGANISM_TAXID: 559292; SOURCE 19 STRAIN: S288C; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ZINC FINGER, SPLICING EXPDTA X-RAY DIFFRACTION AUTHOR P.C.LIN REVDAT 2 25-JUL-18 4DGW 1 COMPND SOURCE REVDAT 1 02-MAY-12 4DGW 0 JRNL AUTH P.C.LIN,R.M.XU JRNL TITL STRUCTURE AND ASSEMBLY OF THE SF3A SPLICING FACTOR COMPLEX JRNL TITL 2 OF U2 SNRNP JRNL REF EMBO J. V. 31 1579 2012 JRNL REFN ISSN 0261-4189 JRNL PMID 22314233 JRNL DOI 10.1038/EMBOJ.2012.7 REMARK 2 REMARK 2 RESOLUTION. 3.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.2_432) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.11 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 19171 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1917 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.8639 - 6.6810 0.92 1747 193 0.2384 0.2822 REMARK 3 2 6.6810 - 5.3126 1.00 1809 201 0.2510 0.3085 REMARK 3 3 5.3126 - 4.6439 1.00 1800 200 0.1917 0.2512 REMARK 3 4 4.6439 - 4.2206 1.00 1772 197 0.1883 0.2478 REMARK 3 5 4.2206 - 3.9188 1.00 1768 197 0.2062 0.2489 REMARK 3 6 3.9188 - 3.6882 1.00 1772 196 0.2234 0.2866 REMARK 3 7 3.6882 - 3.5038 1.00 1787 199 0.2333 0.3017 REMARK 3 8 3.5038 - 3.3515 0.99 1717 191 0.2447 0.2470 REMARK 3 9 3.3515 - 3.2226 0.92 1640 183 0.2857 0.3345 REMARK 3 10 3.2226 - 3.1115 0.82 1434 159 0.3280 0.3766 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.72 REMARK 3 K_SOL : 0.30 REMARK 3 B_SOL : 85.11 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 94.38 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 136.4 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -11.50590 REMARK 3 B22 (A**2) : 38.49540 REMARK 3 B33 (A**2) : -26.98950 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5513 REMARK 3 ANGLE : 0.625 7091 REMARK 3 CHIRALITY : 0.048 759 REMARK 3 PLANARITY : 0.002 918 REMARK 3 DIHEDRAL : 11.584 2017 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 0:378) OR (CHAIN B AND RESID REMARK 3 89:180) REMARK 3 ORIGIN FOR THE GROUP (A): 14.2236 31.8331 58.2495 REMARK 3 T TENSOR REMARK 3 T11: 0.3947 T22: 0.6845 REMARK 3 T33: 0.4806 T12: -0.0220 REMARK 3 T13: -0.0009 T23: 0.1189 REMARK 3 L TENSOR REMARK 3 L11: 0.9114 L22: 0.9281 REMARK 3 L33: 0.7978 L12: 0.3071 REMARK 3 L13: -0.0824 L23: -0.1864 REMARK 3 S TENSOR REMARK 3 S11: -0.0541 S12: 0.3540 S13: 0.0722 REMARK 3 S21: -0.2599 S22: 0.0340 S23: -0.0873 REMARK 3 S31: 0.0327 S32: 0.1212 S33: 0.0365 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN C AND RESID 101:253) OR (CHAIN B AND RESID REMARK 3 181:228) REMARK 3 ORIGIN FOR THE GROUP (A): 58.4314 50.3606 31.4545 REMARK 3 T TENSOR REMARK 3 T11: 1.3150 T22: 1.2149 REMARK 3 T33: 0.7714 T12: -0.3073 REMARK 3 T13: 0.1735 T23: -0.0241 REMARK 3 L TENSOR REMARK 3 L11: 0.1805 L22: 1.0866 REMARK 3 L33: 0.6422 L12: -0.3149 REMARK 3 L13: 0.1002 L23: -0.6751 REMARK 3 S TENSOR REMARK 3 S11: 0.0355 S12: -0.1827 S13: 0.1070 REMARK 3 S21: -0.6073 S22: 0.3056 S23: -0.2105 REMARK 3 S31: 0.4309 S32: -0.6021 S33: -0.2737 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4DGW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000070313. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-APR-08; 23-AUG-09 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : NSLS; NSLS REMARK 200 BEAMLINE : X29A; X29A REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791, 0.9794, 0.9600; 0.9793 REMARK 200 MONOCHROMATOR : SI(111); SI(111) REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315; ADSC QUANTUM REMARK 200 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19171 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.46700 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8-12% ETHANOL, 100MM MES, PH 6, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 50.39050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.58650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 63.62950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 84.58650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 50.39050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 63.62950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 50.39050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.62950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 84.58650 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.62950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 50.39050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 84.58650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -12 REMARK 465 SER A -11 REMARK 465 PRO A -10 REMARK 465 GLY A -9 REMARK 465 ILE A -8 REMARK 465 SER A -7 REMARK 465 GLY A -6 REMARK 465 GLY A -5 REMARK 465 GLY A -4 REMARK 465 GLY A -3 REMARK 465 ILE A -2 REMARK 465 LEU A -1 REMARK 465 ARG A 98 REMARK 465 PRO A 99 REMARK 465 GLU A 100 REMARK 465 GLU A 101 REMARK 465 THR A 102 REMARK 465 GLN A 103 REMARK 465 GLU A 104 REMARK 465 ASP A 105 REMARK 465 ASP A 106 REMARK 465 LYS A 107 REMARK 465 ASP A 108 REMARK 465 LEU A 109 REMARK 465 PRO A 110 REMARK 465 ASN A 111 REMARK 465 GLY A 379 REMARK 465 GLU A 380 REMARK 465 GLN A 381 REMARK 465 ARG A 382 REMARK 465 ASP A 383 REMARK 465 GLY A 384 REMARK 465 GLN A 385 REMARK 465 LEU A 386 REMARK 465 GLN A 387 REMARK 465 GLU A 388 REMARK 465 GLU A 389 REMARK 465 MSE B 86 REMARK 465 GLY B 87 REMARK 465 ILE B 88 REMARK 465 SER B 207 REMARK 465 ILE B 208 REMARK 465 PRO B 209 REMARK 465 GLU B 210 REMARK 465 ASP B 211 REMARK 465 THR B 212 REMARK 465 GLU B 213 REMARK 465 ILE B 214 REMARK 465 PHE B 215 REMARK 465 GLU B 216 REMARK 465 GLY B 217 REMARK 465 SER B 218 REMARK 465 LEU B 219 REMARK 465 VAL B 229 REMARK 465 GLN B 230 REMARK 465 THR B 231 REMARK 465 GLY B 232 REMARK 465 ILE B 233 REMARK 465 LYS B 234 REMARK 465 LEU B 235 REMARK 465 PHE B 236 REMARK 465 ASP B 237 REMARK 465 UNK C 36 REMARK 465 UNK C 37 REMARK 465 UNK C 38 REMARK 465 UNK C 39 REMARK 465 UNK C 40 REMARK 465 UNK C 41 REMARK 465 UNK C 42 REMARK 465 UNK C 43 REMARK 465 UNK C 44 REMARK 465 UNK C 45 REMARK 465 UNK C 46 REMARK 465 UNK C 47 REMARK 465 UNK C 48 REMARK 465 UNK C 49 REMARK 465 UNK C 50 REMARK 465 UNK C 51 REMARK 465 UNK C 52 REMARK 465 UNK C 53 REMARK 465 UNK C 54 REMARK 465 UNK C 55 REMARK 465 UNK C 56 REMARK 465 UNK C 57 REMARK 465 UNK C 58 REMARK 465 UNK C 59 REMARK 465 UNK C 60 REMARK 465 UNK C 61 REMARK 465 UNK C 62 REMARK 465 UNK C 63 REMARK 465 UNK C 64 REMARK 465 UNK C 65 REMARK 465 UNK C 66 REMARK 465 UNK C 67 REMARK 465 UNK C 68 REMARK 465 UNK C 69 REMARK 465 UNK C 70 REMARK 465 UNK C 71 REMARK 465 UNK C 72 REMARK 465 UNK C 73 REMARK 465 UNK C 74 REMARK 465 UNK C 75 REMARK 465 UNK C 76 REMARK 465 UNK C 77 REMARK 465 UNK C 78 REMARK 465 UNK C 79 REMARK 465 UNK C 80 REMARK 465 UNK C 81 REMARK 465 UNK C 82 REMARK 465 UNK C 83 REMARK 465 UNK C 84 REMARK 465 UNK C 85 REMARK 465 UNK C 86 REMARK 465 UNK C 87 REMARK 465 UNK C 88 REMARK 465 UNK C 89 REMARK 465 UNK C 90 REMARK 465 UNK C 91 REMARK 465 UNK C 92 REMARK 465 UNK C 93 REMARK 465 UNK C 94 REMARK 465 UNK C 95 REMARK 465 UNK C 96 REMARK 465 UNK C 97 REMARK 465 UNK C 98 REMARK 465 UNK C 99 REMARK 465 UNK C 100 REMARK 465 UNK C 137 REMARK 465 UNK C 138 REMARK 465 UNK C 139 REMARK 465 UNK C 140 REMARK 465 UNK C 141 REMARK 465 UNK C 142 REMARK 465 UNK C 143 REMARK 465 UNK C 144 REMARK 465 UNK C 145 REMARK 465 UNK C 146 REMARK 465 UNK C 147 REMARK 465 UNK C 148 REMARK 465 PHE C 254 REMARK 465 PHE C 255 REMARK 465 PHE C 256 REMARK 465 LYS C 257 REMARK 465 GLN C 258 REMARK 465 ALA C 259 REMARK 465 GLU C 260 REMARK 465 GLN C 261 REMARK 465 GLU C 262 REMARK 465 GLN C 263 REMARK 465 ALA C 264 REMARK 465 ASP C 265 REMARK 465 VAL C 266 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 49 170.58 -58.99 REMARK 500 TYR A 60 -79.34 -130.60 REMARK 500 GLU A 126 71.61 46.97 REMARK 500 ASN A 129 66.21 -112.56 REMARK 500 ASN A 135 16.53 -145.04 REMARK 500 ARG A 152 -66.73 -131.96 REMARK 500 THR A 154 -38.14 -132.56 REMARK 500 ARG A 195 -164.20 -162.04 REMARK 500 ARG A 224 0.18 -68.35 REMARK 500 GLU A 362 41.37 -102.90 REMARK 500 ALA A 374 53.08 -107.27 REMARK 500 LYS B 107 -2.15 69.72 REMARK 500 THR B 201 74.88 -159.74 REMARK 500 VAL B 203 -59.99 -120.19 REMARK 500 LEU B 226 -155.72 -112.83 REMARK 500 SER C 150 -154.65 -157.87 REMARK 500 SER C 160 151.09 -45.77 REMARK 500 SER C 161 73.66 -103.34 REMARK 500 GLU C 162 45.27 38.79 REMARK 500 ASP C 171 40.85 35.60 REMARK 500 LYS C 192 -73.09 -114.51 REMARK 500 LEU C 219 7.17 57.96 REMARK 500 PHE C 220 87.09 -66.84 REMARK 500 ASP C 227 71.16 40.27 REMARK 500 ASN C 229 79.55 -105.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 298 NE2 REMARK 620 2 HIS A 304 ND1 112.0 REMARK 620 3 CYS A 282 SG 110.9 105.0 REMARK 620 4 CYS A 285 SG 108.5 101.5 118.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE OF CHAIN C IS RESIDUES 50-266 REMARK 999 IN UNP DATABASE, PRP11_YEAST INCLUDING N-TERMINAL 14 TAGS. REMARK 999 (SEE BELOW) REMARK 999 REMARK 999 MGSSHHHHHHSQDPDQVRSNPYIYKNHSGKLVCKLCNTMH REMARK 999 MSWSSVERHLGGKKHGLNVLRRGISIEKSSLGREGQTTHD REMARK 999 FRQQQKIIEAKQSLKNNGTIPVCKIATVKNPKNGSVGLAI REMARK 999 QVNYSSEVKENSVDSDDKAKVPPLIRIVSGLELSDTKQKG REMARK 999 KKFLVIAYEPFENIAIELPPNEILFSENNDMDNNNDGVDE REMARK 999 LNKKCTFWDAISKLYYVQFFFKQAEQEQADV REMARK 999 REMARK 999 THE AUTHOR COULD DETERMINE THE RESIDUES 149-253. REMARK 999 THE AUTHOR COULD OBSERVE RESIDUES 101-136 AND REMARK 999 BELIEVED THAT THESE RESIDUES IS PART OF THE N-TERMINAL REMARK 999 RESIDUES 36-148. REMARK 999 BUT THE AUTHOR IS NOT SURE WHICH PART CORRESPONDS WITH REMARK 999 THESE RESIDUES. REMARK 999 SO THE RESIDUE NUMBERS OF 101-136 IS MEANINGLESS. DBREF 4DGW A 1 389 UNP P19736 PRP9_YEAST 1 389 DBREF 4DGW B 87 237 UNP P32524 PRP21_YEAST 87 237 DBREF 4DGW C 50 266 UNP Q07350 PRP11_YEAST 50 266 SEQADV 4DGW GLY A -12 UNP P19736 EXPRESSION TAG SEQADV 4DGW SER A -11 UNP P19736 EXPRESSION TAG SEQADV 4DGW PRO A -10 UNP P19736 EXPRESSION TAG SEQADV 4DGW GLY A -9 UNP P19736 EXPRESSION TAG SEQADV 4DGW ILE A -8 UNP P19736 EXPRESSION TAG SEQADV 4DGW SER A -7 UNP P19736 EXPRESSION TAG SEQADV 4DGW GLY A -6 UNP P19736 EXPRESSION TAG SEQADV 4DGW GLY A -5 UNP P19736 EXPRESSION TAG SEQADV 4DGW GLY A -4 UNP P19736 EXPRESSION TAG SEQADV 4DGW GLY A -3 UNP P19736 EXPRESSION TAG SEQADV 4DGW ILE A -2 UNP P19736 EXPRESSION TAG SEQADV 4DGW LEU A -1 UNP P19736 EXPRESSION TAG SEQADV 4DGW GLU A 0 UNP P19736 EXPRESSION TAG SEQADV 4DGW MSE B 86 UNP P32524 EXPRESSION TAG SEQADV 4DGW UNK C 36 UNP Q07350 SEE REAMRK 999 SEQADV 4DGW UNK C 37 UNP Q07350 SEE REAMRK 999 SEQADV 4DGW UNK C 38 UNP Q07350 SEE REAMRK 999 SEQADV 4DGW UNK C 39 UNP Q07350 SEE REAMRK 999 SEQADV 4DGW UNK C 40 UNP Q07350 SEE REAMRK 999 SEQADV 4DGW UNK C 41 UNP Q07350 SEE REAMRK 999 SEQADV 4DGW UNK C 42 UNP Q07350 SEE REAMRK 999 SEQADV 4DGW UNK C 43 UNP Q07350 SEE REAMRK 999 SEQADV 4DGW UNK C 44 UNP Q07350 SEE REAMRK 999 SEQADV 4DGW UNK C 45 UNP Q07350 SEE REAMRK 999 SEQADV 4DGW UNK C 46 UNP Q07350 SEE REAMRK 999 SEQADV 4DGW UNK C 47 UNP Q07350 SEE REAMRK 999 SEQADV 4DGW UNK C 48 UNP Q07350 SEE REAMRK 999 SEQADV 4DGW UNK C 49 UNP Q07350 SEE REAMRK 999 SEQADV 4DGW MSE C 153 UNP Q07350 LEU 153 ENGINEERED MUTATION SEQRES 1 A 402 GLY SER PRO GLY ILE SER GLY GLY GLY GLY ILE LEU GLU SEQRES 2 A 402 MSE ASN LEU LEU GLU THR ARG ARG SER LEU LEU GLU GLU SEQRES 3 A 402 MSE GLU ILE ILE GLU ASN ALA ILE ALA GLU ARG ILE GLN SEQRES 4 A 402 ARG ASN PRO GLU LEU TYR TYR HIS TYR ILE GLN GLU SER SEQRES 5 A 402 SER LYS VAL PHE PRO ASP THR LYS LEU PRO ARG SER SER SEQRES 6 A 402 LEU ILE ALA GLU ASN LYS ILE TYR LYS PHE LYS LYS VAL SEQRES 7 A 402 LYS ARG LYS ARG LYS GLN ILE ILE LEU GLN GLN HIS GLU SEQRES 8 A 402 ILE ASN ILE PHE LEU ARG ASP TYR GLN GLU LYS GLN GLN SEQRES 9 A 402 THR PHE ASN LYS ILE ASN ARG PRO GLU GLU THR GLN GLU SEQRES 10 A 402 ASP ASP LYS ASP LEU PRO ASN PHE GLU ARG LYS LEU GLN SEQRES 11 A 402 GLN LEU GLU LYS GLU LEU LYS ASN GLU ASP GLU ASN PHE SEQRES 12 A 402 GLU LEU ASP ILE ASN SER LYS LYS ASP LYS TYR ALA LEU SEQRES 13 A 402 PHE SER SER SER SER ASP PRO SER ARG ARG THR ASN ILE SEQRES 14 A 402 LEU SER ASP ARG ALA ARG ASP LEU ASP LEU ASN GLU ILE SEQRES 15 A 402 PHE THR ARG ASP GLU GLN TYR GLY GLU TYR MSE GLU LEU SEQRES 16 A 402 GLU GLN PHE HIS SER LEU TRP LEU ASN VAL ILE LYS ARG SEQRES 17 A 402 GLY ASP CYS SER LEU LEU GLN PHE LEU ASP ILE LEU GLU SEQRES 18 A 402 LEU PHE LEU ASP ASP GLU LYS TYR LEU LEU THR PRO PRO SEQRES 19 A 402 MSE ASP ARG LYS ASN ASP ARG TYR MSE ALA PHE LEU LEU SEQRES 20 A 402 LYS LEU SER LYS TYR VAL GLU THR PHE PHE PHE LYS SER SEQRES 21 A 402 TYR ALA LEU LEU ASP ALA ALA ALA VAL GLU ASN LEU ILE SEQRES 22 A 402 LYS SER ASP PHE GLU HIS SER TYR CYS ARG GLY SER LEU SEQRES 23 A 402 ARG SER GLU ALA LYS GLY ILE TYR CYS PRO PHE CYS SER SEQRES 24 A 402 ARG TRP PHE LYS THR SER SER VAL PHE GLU SER HIS LEU SEQRES 25 A 402 VAL GLY LYS ILE HIS LYS LYS ASN GLU SER LYS ARG ARG SEQRES 26 A 402 ASN PHE VAL TYR SER GLU TYR LYS LEU HIS ARG TYR LEU SEQRES 27 A 402 LYS TYR LEU ASN ASP GLU PHE SER ARG THR ARG SER PHE SEQRES 28 A 402 VAL GLU ARG LYS LEU ALA PHE THR ALA ASN GLU ARG MSE SEQRES 29 A 402 ALA GLU MSE ASP ILE LEU THR GLN LYS TYR GLU ALA PRO SEQRES 30 A 402 ALA TYR ASP SER THR GLU LYS GLU GLY ALA GLU GLN VAL SEQRES 31 A 402 ASP GLY GLU GLN ARG ASP GLY GLN LEU GLN GLU GLU SEQRES 1 B 152 MSE GLY ILE SER ARG ARG ASP MSE GLU VAL ILE LYS LEU SEQRES 2 B 152 THR ALA ARG TYR TYR ALA LYS ASP LYS SER ILE VAL GLU SEQRES 3 B 152 GLN MSE ILE SER LYS ASP GLY GLU ALA ARG LEU ASN PHE SEQRES 4 B 152 MSE ASN SER SER HIS PRO LEU HIS LYS THR PHE THR ASP SEQRES 5 B 152 PHE VAL ALA GLN TYR LYS ARG VAL TYR SER PHE THR GLY SEQRES 6 B 152 GLN GLU ILE LYS LYS SER LYS ARG THR ILE LEU ASP ASN SEQRES 7 B 152 CYS PHE GLU ARG THR GLN TYR TRP GLU PHE GLU LYS ASP SEQRES 8 B 152 LYS ASP ARG GLU HIS ASP LYS LEU VAL GLU LEU CYS LYS SEQRES 9 B 152 ILE GLN PHE ALA ALA ILE PRO TRP ASP LYS PHE THR GLN SEQRES 10 B 152 VAL ALA LYS PHE SER ILE PRO GLU ASP THR GLU ILE PHE SEQRES 11 B 152 GLU GLY SER LEU ASP LEU GLU GLN MSE ARG LEU ARG ARG SEQRES 12 B 152 VAL GLN THR GLY ILE LYS LEU PHE ASP SEQRES 1 C 231 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 2 C 231 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 3 C 231 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 4 C 231 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 5 C 231 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 6 C 231 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 7 C 231 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 8 C 231 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 9 C 231 UNK UNK UNK UNK UNK UNK UNK UNK UNK GLY SER VAL GLY SEQRES 10 C 231 MSE ALA ILE GLN VAL ASN TYR SER SER GLU VAL LYS GLU SEQRES 11 C 231 ASN SER VAL ASP SER ASP ASP LYS ALA LYS VAL PRO PRO SEQRES 12 C 231 LEU ILE ARG ILE VAL SER GLY LEU GLU LEU SER ASP THR SEQRES 13 C 231 LYS GLN LYS GLY LYS LYS PHE LEU VAL ILE ALA TYR GLU SEQRES 14 C 231 PRO PHE GLU ASN ILE ALA ILE GLU LEU PRO PRO ASN GLU SEQRES 15 C 231 ILE LEU PHE SER GLU ASN ASN ASP MSE ASP ASN ASN ASN SEQRES 16 C 231 ASP GLY VAL ASP GLU LEU ASN LYS LYS CYS THR PHE TRP SEQRES 17 C 231 ASP ALA ILE SER LYS LEU TYR TYR VAL GLN PHE PHE PHE SEQRES 18 C 231 LYS GLN ALA GLU GLN GLU GLN ALA ASP VAL MODRES 4DGW MSE A 1 MET SELENOMETHIONINE MODRES 4DGW MSE A 14 MET SELENOMETHIONINE MODRES 4DGW MSE A 180 MET SELENOMETHIONINE MODRES 4DGW MSE A 222 MET SELENOMETHIONINE MODRES 4DGW MSE A 230 MET SELENOMETHIONINE MODRES 4DGW MSE A 351 MET SELENOMETHIONINE MODRES 4DGW MSE A 354 MET SELENOMETHIONINE MODRES 4DGW MSE B 93 MET SELENOMETHIONINE MODRES 4DGW MSE B 113 MET SELENOMETHIONINE MODRES 4DGW MSE B 125 MET SELENOMETHIONINE MODRES 4DGW MSE B 224 MET SELENOMETHIONINE MODRES 4DGW MSE C 153 MET SELENOMETHIONINE MODRES 4DGW MSE C 226 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 14 8 HET MSE A 180 8 HET MSE A 222 8 HET MSE A 230 8 HET MSE A 351 8 HET MSE A 354 8 HET MSE B 93 8 HET MSE B 113 8 HET MSE B 125 8 HET MSE B 224 8 HET MSE C 153 8 HET MSE C 226 8 HET ZN A 401 1 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION FORMUL 1 MSE 13(C5 H11 N O2 SE) FORMUL 4 ZN ZN 2+ FORMUL 5 HOH *7(H2 O) HELIX 1 1 ASN A 2 ASN A 28 1 27 HELIX 2 2 PRO A 29 LYS A 41 1 13 HELIX 3 3 ARG A 50 ASN A 57 1 8 HELIX 4 4 LYS A 68 ASN A 97 1 30 HELIX 5 5 GLU A 113 LEU A 123 1 11 HELIX 6 6 SER A 136 PHE A 144 1 9 HELIX 7 7 SER A 158 ARG A 162 5 5 HELIX 8 8 ASP A 165 ILE A 169 5 5 HELIX 9 9 LEU A 182 LYS A 194 1 13 HELIX 10 10 SER A 199 LEU A 209 1 11 HELIX 11 11 PHE A 210 ASP A 212 5 3 HELIX 12 12 GLU A 214 THR A 219 1 6 HELIX 13 13 ASN A 226 TYR A 248 1 23 HELIX 14 14 ASP A 252 SER A 267 1 16 HELIX 15 15 TYR A 268 GLY A 271 5 4 HELIX 16 16 THR A 291 SER A 297 1 7 HELIX 17 17 GLY A 301 ARG A 311 1 11 HELIX 18 18 ARG A 311 LEU A 328 1 18 HELIX 19 19 LEU A 328 ALA A 344 1 17 HELIX 20 20 THR A 346 GLU A 362 1 17 HELIX 21 21 ARG B 90 ALA B 104 1 15 HELIX 22 22 SER B 108 ASP B 117 1 10 HELIX 23 23 LEU B 122 ASN B 126 5 5 HELIX 24 24 LEU B 131 TYR B 146 1 16 HELIX 25 25 SER B 156 ALA B 194 1 39 HELIX 26 26 UNK C 102 UNK C 118 1 17 HELIX 27 27 ASP C 234 CYS C 240 1 7 SHEET 1 A 2 ARG A 274 SER A 275 0 SHEET 2 A 2 GLY A 279 ILE A 280 -1 O GLY A 279 N SER A 275 SHEET 1 B 4 UNK C 131 UNK C 132 0 SHEET 2 B 4 MSE C 153 ASN C 158 -1 O ALA C 154 N UNK C 131 SHEET 3 B 4 LEU C 249 VAL C 252 -1 O TYR C 250 N VAL C 157 SHEET 4 B 4 THR C 241 ASP C 244 -1 N PHE C 242 O TYR C 251 SHEET 1 C 3 LEU C 179 SER C 184 0 SHEET 2 C 3 LYS C 197 ALA C 202 -1 O ALA C 202 N LEU C 179 SHEET 3 C 3 GLU C 212 LEU C 213 -1 O LEU C 213 N LYS C 197 LINK C GLU A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N ASN A 2 1555 1555 1.33 LINK C GLU A 13 N MSE A 14 1555 1555 1.33 LINK C MSE A 14 N GLU A 15 1555 1555 1.33 LINK C TYR A 179 N MSE A 180 1555 1555 1.33 LINK C MSE A 180 N GLU A 181 1555 1555 1.33 LINK C PRO A 221 N MSE A 222 1555 1555 1.33 LINK C MSE A 222 N ASP A 223 1555 1555 1.33 LINK C TYR A 229 N MSE A 230 1555 1555 1.33 LINK C MSE A 230 N ALA A 231 1555 1555 1.33 LINK C ARG A 350 N MSE A 351 1555 1555 1.33 LINK C MSE A 351 N ALA A 352 1555 1555 1.33 LINK C GLU A 353 N MSE A 354 1555 1555 1.33 LINK C MSE A 354 N ASP A 355 1555 1555 1.33 LINK C ASP B 92 N MSE B 93 1555 1555 1.33 LINK C MSE B 93 N GLU B 94 1555 1555 1.33 LINK C GLN B 112 N MSE B 113 1555 1555 1.33 LINK C MSE B 113 N ILE B 114 1555 1555 1.33 LINK C PHE B 124 N MSE B 125 1555 1555 1.33 LINK C MSE B 125 N ASN B 126 1555 1555 1.33 LINK C GLN B 223 N MSE B 224 1555 1555 1.33 LINK C MSE B 224 N ARG B 225 1555 1555 1.33 LINK C GLY C 152 N MSE C 153 1555 1555 1.33 LINK C MSE C 153 N ALA C 154 1555 1555 1.33 LINK C ASP C 225 N MSE C 226 1555 1555 1.33 LINK C MSE C 226 N ASP C 227 1555 1555 1.33 LINK NE2 HIS A 298 ZN ZN A 401 1555 1555 2.36 LINK ND1 HIS A 304 ZN ZN A 401 1555 1555 2.38 LINK SG CYS A 282 ZN ZN A 401 1555 1555 2.53 LINK SG CYS A 285 ZN ZN A 401 1555 1555 2.66 SITE 1 AC1 4 CYS A 282 CYS A 285 HIS A 298 HIS A 304 CRYST1 100.781 127.259 169.173 90.00 90.00 90.00 I 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009923 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007858 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005911 0.00000