HEADER SIGNALING PROTEIN/INHIBITOR 02-FEB-12 4DJS TITLE STRUCTURE OF BETA-CATENIN IN COMPLEX WITH A STAPLED PEPTIDE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATENIN BETA-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ARMADILLO REPEATS 1-12 (UNP RESIDUES 148-665); COMPND 5 SYNONYM: BETA-CATENIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: STAPLED PEPTIDE RRWPQ(MK8)ILD(MK8)HVRRVWR; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CTNNB1, CTNNB, OK/SW-CL.35, PRO2286; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES KEYWDS TRANSCRIPTION REGULATION, SIGNALING PROTEIN-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.R.BOWMAN,T.N.GROSSMANN,J.T.-H.YEH,G.L.VERDINE REVDAT 3 17-JUL-19 4DJS 1 REMARK LINK REVDAT 2 28-AUG-13 4DJS 1 JRNL REVDAT 1 17-OCT-12 4DJS 0 JRNL AUTH T.N.GROSSMANN,J.T.YEH,B.R.BOWMAN,Q.CHU,R.E.MOELLERING, JRNL AUTH 2 G.L.VERDINE JRNL TITL INHIBITION OF ONCOGENIC WNT SIGNALING THROUGH DIRECT JRNL TITL 2 TARGETING OF BETA-CATENIN. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 17942 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 23071338 JRNL DOI 10.1073/PNAS.1208396109 REMARK 2 REMARK 2 RESOLUTION. 3.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.1_357) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.26 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.110 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 3 NUMBER OF REFLECTIONS : 12159 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.266 REMARK 3 R VALUE (WORKING SET) : 0.263 REMARK 3 FREE R VALUE : 0.291 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.950 REMARK 3 FREE R VALUE TEST SET COUNT : 1210 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 50.2672 - 6.2972 0.99 1383 154 0.2277 0.2344 REMARK 3 2 6.2972 - 4.9997 0.98 1306 145 0.2747 0.3053 REMARK 3 3 4.9997 - 4.3681 0.99 1304 144 0.2326 0.2630 REMARK 3 4 4.3681 - 3.9689 0.98 1255 138 0.2492 0.2689 REMARK 3 5 3.9689 - 3.6845 0.96 1250 139 0.2628 0.3143 REMARK 3 6 3.6845 - 3.4674 0.93 1206 126 0.2773 0.3183 REMARK 3 7 3.4674 - 3.2937 0.91 1159 133 0.3095 0.3529 REMARK 3 8 3.2937 - 3.1504 0.87 1100 118 0.3196 0.3396 REMARK 3 9 3.1504 - 3.0290 0.78 986 113 0.3370 0.3318 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 59.09 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.570 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 40.20950 REMARK 3 B22 (A**2) : -18.04630 REMARK 3 B33 (A**2) : -22.16330 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 4067 REMARK 3 ANGLE : 0.487 5513 REMARK 3 CHIRALITY : 0.032 670 REMARK 3 PLANARITY : 0.002 701 REMARK 3 DIHEDRAL : 11.022 1520 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 148:166 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.2181 18.7504 -90.3262 REMARK 3 T TENSOR REMARK 3 T11: 0.6533 T22: 0.7304 REMARK 3 T33: 0.3518 T12: -0.0567 REMARK 3 T13: -0.0171 T23: 0.0914 REMARK 3 L TENSOR REMARK 3 L11: 0.7554 L22: 1.0495 REMARK 3 L33: 2.4030 L12: 0.1048 REMARK 3 L13: 0.0517 L23: -0.9095 REMARK 3 S TENSOR REMARK 3 S11: 0.0684 S12: 0.4424 S13: 0.1678 REMARK 3 S21: -0.3261 S22: -0.5065 S23: -0.0115 REMARK 3 S31: -0.6875 S32: -0.3982 S33: -0.0345 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 167:277 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.1042 14.4649 -74.1386 REMARK 3 T TENSOR REMARK 3 T11: 0.1416 T22: 0.2792 REMARK 3 T33: 0.3874 T12: -0.0116 REMARK 3 T13: -0.0039 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 1.1183 L22: 1.7740 REMARK 3 L33: 4.7313 L12: -1.2630 REMARK 3 L13: 0.5768 L23: -1.1873 REMARK 3 S TENSOR REMARK 3 S11: -0.0700 S12: -0.1366 S13: -0.0427 REMARK 3 S21: -0.1186 S22: 0.1170 S23: -0.1007 REMARK 3 S31: 0.1115 S32: -0.3084 S33: -0.0217 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 278:388 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.6369 10.7068 -46.5290 REMARK 3 T TENSOR REMARK 3 T11: 0.1169 T22: 0.3806 REMARK 3 T33: 0.2996 T12: 0.0616 REMARK 3 T13: 0.0126 T23: 0.0968 REMARK 3 L TENSOR REMARK 3 L11: -1.2129 L22: 2.7876 REMARK 3 L33: 5.0379 L12: 0.6051 REMARK 3 L13: -0.3340 L23: -0.6792 REMARK 3 S TENSOR REMARK 3 S11: 0.1709 S12: -0.1041 S13: -0.2454 REMARK 3 S21: 0.0990 S22: -0.0541 S23: -0.0195 REMARK 3 S31: -0.1176 S32: -0.4358 S33: -0.0080 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 389:443 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.6193 4.6017 -26.3672 REMARK 3 T TENSOR REMARK 3 T11: 0.4007 T22: 0.4221 REMARK 3 T33: 0.3694 T12: -0.0569 REMARK 3 T13: 0.0220 T23: 0.0585 REMARK 3 L TENSOR REMARK 3 L11: 2.3734 L22: 1.4782 REMARK 3 L33: 1.5754 L12: -0.3868 REMARK 3 L13: 0.8800 L23: -0.9930 REMARK 3 S TENSOR REMARK 3 S11: -0.3381 S12: 0.0472 S13: -0.0821 REMARK 3 S21: 0.5138 S22: 0.2773 S23: -0.0264 REMARK 3 S31: -0.4039 S32: -0.1397 S33: 0.0833 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND RESID 444:490 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.3471 -0.1264 -17.3764 REMARK 3 T TENSOR REMARK 3 T11: 0.7737 T22: 0.3423 REMARK 3 T33: 0.4360 T12: 0.0469 REMARK 3 T13: -0.0690 T23: 0.0467 REMARK 3 L TENSOR REMARK 3 L11: 1.2576 L22: 2.2225 REMARK 3 L33: 1.0616 L12: -0.8236 REMARK 3 L13: 0.9007 L23: -0.5008 REMARK 3 S TENSOR REMARK 3 S11: -0.4282 S12: 0.1320 S13: -0.0341 REMARK 3 S21: 1.0849 S22: 0.5014 S23: 0.0623 REMARK 3 S31: -0.2878 S32: -0.2203 S33: 0.0204 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN A AND RESID 491:517 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.3814 3.3340 -15.0264 REMARK 3 T TENSOR REMARK 3 T11: 1.2462 T22: 0.4603 REMARK 3 T33: 0.8825 T12: -0.0388 REMARK 3 T13: -0.6526 T23: -0.1436 REMARK 3 L TENSOR REMARK 3 L11: 0.6233 L22: 5.3559 REMARK 3 L33: 0.9301 L12: 0.6054 REMARK 3 L13: -0.1792 L23: -2.1065 REMARK 3 S TENSOR REMARK 3 S11: -0.2273 S12: -0.5251 S13: -0.1855 REMARK 3 S21: 2.8792 S22: 0.6254 S23: -1.5467 REMARK 3 S31: -0.5025 S32: 0.7004 S33: 0.2487 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN A AND RESID 518:549 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.7964 6.1572 -6.3697 REMARK 3 T TENSOR REMARK 3 T11: 1.9138 T22: 0.5877 REMARK 3 T33: 1.0552 T12: -0.0349 REMARK 3 T13: -0.8866 T23: -0.2215 REMARK 3 L TENSOR REMARK 3 L11: 0.2296 L22: 4.0107 REMARK 3 L33: 0.3150 L12: 1.1527 REMARK 3 L13: -0.0383 L23: -0.1587 REMARK 3 S TENSOR REMARK 3 S11: 1.4748 S12: -0.4876 S13: -0.8474 REMARK 3 S21: 3.1155 S22: -0.5811 S23: -1.5102 REMARK 3 S31: -0.3695 S32: 0.3731 S33: 0.1941 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN A AND RESID 561:603 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.0076 12.0047 -3.7548 REMARK 3 T TENSOR REMARK 3 T11: 2.3857 T22: 0.2952 REMARK 3 T33: 0.8311 T12: -0.2493 REMARK 3 T13: -0.8715 T23: 0.1765 REMARK 3 L TENSOR REMARK 3 L11: 1.5613 L22: 2.3294 REMARK 3 L33: 2.9596 L12: 1.7215 REMARK 3 L13: -0.5707 L23: 0.9157 REMARK 3 S TENSOR REMARK 3 S11: 0.0195 S12: -0.3235 S13: -0.4898 REMARK 3 S21: 3.0768 S22: -0.4332 S23: -0.7969 REMARK 3 S31: -2.6986 S32: 0.4833 S33: -0.4393 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: ( CHAIN A AND RESID 604:621 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.8265 20.7456 -2.6184 REMARK 3 T TENSOR REMARK 3 T11: 3.3847 T22: 0.5205 REMARK 3 T33: 0.5116 T12: -0.2656 REMARK 3 T13: -0.4055 T23: -0.0991 REMARK 3 L TENSOR REMARK 3 L11: 1.6794 L22: 1.0796 REMARK 3 L33: 1.4861 L12: -0.0638 REMARK 3 L13: -0.8763 L23: -1.1140 REMARK 3 S TENSOR REMARK 3 S11: 0.1748 S12: -0.3150 S13: 0.9341 REMARK 3 S21: 2.8664 S22: -1.4037 S23: 1.5317 REMARK 3 S31: -1.7993 S32: 0.3781 S33: 0.0162 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: ( CHAIN A AND RESID 622:665 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.1469 22.5797 7.2640 REMARK 3 T TENSOR REMARK 3 T11: 3.3934 T22: 0.7469 REMARK 3 T33: 0.7853 T12: -0.4295 REMARK 3 T13: -0.0415 T23: -0.0946 REMARK 3 L TENSOR REMARK 3 L11: 1.3225 L22: 2.1351 REMARK 3 L33: 2.3292 L12: 0.8251 REMARK 3 L13: -0.1843 L23: -0.5083 REMARK 3 S TENSOR REMARK 3 S11: 1.1716 S12: -0.0501 S13: 0.3275 REMARK 3 S21: 1.9718 S22: -0.9190 S23: 1.1616 REMARK 3 S31: -1.8687 S32: 0.2312 S33: 0.1023 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: ( CHAIN B AND RESID 2:16 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.1129 1.8041 -65.2394 REMARK 3 T TENSOR REMARK 3 T11: 0.6673 T22: 0.5917 REMARK 3 T33: 0.5146 T12: -0.2223 REMARK 3 T13: -0.1207 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 1.0899 L22: 4.1617 REMARK 3 L33: 1.9562 L12: 1.1841 REMARK 3 L13: 0.7123 L23: -0.2032 REMARK 3 S TENSOR REMARK 3 S11: 0.0979 S12: -0.6885 S13: -0.6201 REMARK 3 S21: -1.1775 S22: 0.3233 S23: -0.5522 REMARK 3 S31: 0.4849 S32: -0.4151 S33: -0.1446 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4DJS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000070417. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-10 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : CRYO-COOLED DOUBLE CRYSTAL REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12929 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.029 REMARK 200 RESOLUTION RANGE LOW (A) : 50.260 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4-2.0 M SODIUM CHLORIDE, 100 MM BIS REMARK 280 -TRIS, 100 MM POTASSIUM PHOSPHATE MONOBASIC, PH 6.2, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.53000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.85700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.40400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.85700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.53000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.40400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 550 REMARK 465 THR A 551 REMARK 465 SER A 552 REMARK 465 MET A 553 REMARK 465 GLY A 554 REMARK 465 GLY A 555 REMARK 465 THR A 556 REMARK 465 GLN A 557 REMARK 465 GLN A 558 REMARK 465 GLN A 559 REMARK 465 PHE A 560 REMARK 465 ARG B 1 REMARK 465 ARG B 17 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MK8 B 6 O - C - N ANGL. DEV. = 10.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 178 39.41 -85.81 REMARK 500 ARG A 190 33.72 -90.67 REMARK 500 THR A 330 -41.87 -139.61 REMARK 500 ALA A 392 67.27 -69.13 REMARK 500 LYS A 394 -0.44 -146.16 REMARK 500 ARG A 457 107.62 -59.31 REMARK 500 GLU A 477 25.03 -77.09 REMARK 500 HIS A 488 32.33 -97.79 REMARK 500 LEU A 580 36.30 -83.13 REMARK 500 VAL B 15 -70.76 -106.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 MK8 B 10 10.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN B OF STAPLED PEPTIDE DBREF 4DJS A 148 665 UNP P35222 CTNB1_HUMAN 148 665 DBREF 4DJS B 1 17 PDB 4DJS 4DJS 1 17 SEQRES 1 A 518 LEU ALA THR ARG ALA ILE PRO GLU LEU THR LYS LEU LEU SEQRES 2 A 518 ASN ASP GLU ASP GLN VAL VAL VAL ASN LYS ALA ALA VAL SEQRES 3 A 518 MET VAL HIS GLN LEU SER LYS LYS GLU ALA SER ARG HIS SEQRES 4 A 518 ALA ILE MET ARG SER PRO GLN MET VAL SER ALA ILE VAL SEQRES 5 A 518 ARG THR MET GLN ASN THR ASN ASP VAL GLU THR ALA ARG SEQRES 6 A 518 CYS THR ALA GLY THR LEU HIS ASN LEU SER HIS HIS ARG SEQRES 7 A 518 GLU GLY LEU LEU ALA ILE PHE LYS SER GLY GLY ILE PRO SEQRES 8 A 518 ALA LEU VAL LYS MET LEU GLY SER PRO VAL ASP SER VAL SEQRES 9 A 518 LEU PHE TYR ALA ILE THR THR LEU HIS ASN LEU LEU LEU SEQRES 10 A 518 HIS GLN GLU GLY ALA LYS MET ALA VAL ARG LEU ALA GLY SEQRES 11 A 518 GLY LEU GLN LYS MET VAL ALA LEU LEU ASN LYS THR ASN SEQRES 12 A 518 VAL LYS PHE LEU ALA ILE THR THR ASP CYS LEU GLN ILE SEQRES 13 A 518 LEU ALA TYR GLY ASN GLN GLU SER LYS LEU ILE ILE LEU SEQRES 14 A 518 ALA SER GLY GLY PRO GLN ALA LEU VAL ASN ILE MET ARG SEQRES 15 A 518 THR TYR THR TYR GLU LYS LEU LEU TRP THR THR SER ARG SEQRES 16 A 518 VAL LEU LYS VAL LEU SER VAL CYS SER SER ASN LYS PRO SEQRES 17 A 518 ALA ILE VAL GLU ALA GLY GLY MET GLN ALA LEU GLY LEU SEQRES 18 A 518 HIS LEU THR ASP PRO SER GLN ARG LEU VAL GLN ASN CYS SEQRES 19 A 518 LEU TRP THR LEU ARG ASN LEU SER ASP ALA ALA THR LYS SEQRES 20 A 518 GLN GLU GLY MET GLU GLY LEU LEU GLY THR LEU VAL GLN SEQRES 21 A 518 LEU LEU GLY SER ASP ASP ILE ASN VAL VAL THR CYS ALA SEQRES 22 A 518 ALA GLY ILE LEU SER ASN LEU THR CYS ASN ASN TYR LYS SEQRES 23 A 518 ASN LYS MET MET VAL CYS GLN VAL GLY GLY ILE GLU ALA SEQRES 24 A 518 LEU VAL ARG THR VAL LEU ARG ALA GLY ASP ARG GLU ASP SEQRES 25 A 518 ILE THR GLU PRO ALA ILE CYS ALA LEU ARG HIS LEU THR SEQRES 26 A 518 SER ARG HIS GLN GLU ALA GLU MET ALA GLN ASN ALA VAL SEQRES 27 A 518 ARG LEU HIS TYR GLY LEU PRO VAL VAL VAL LYS LEU LEU SEQRES 28 A 518 HIS PRO PRO SER HIS TRP PRO LEU ILE LYS ALA THR VAL SEQRES 29 A 518 GLY LEU ILE ARG ASN LEU ALA LEU CYS PRO ALA ASN HIS SEQRES 30 A 518 ALA PRO LEU ARG GLU GLN GLY ALA ILE PRO ARG LEU VAL SEQRES 31 A 518 GLN LEU LEU VAL ARG ALA HIS GLN ASP THR GLN ARG ARG SEQRES 32 A 518 THR SER MET GLY GLY THR GLN GLN GLN PHE VAL GLU GLY SEQRES 33 A 518 VAL ARG MET GLU GLU ILE VAL GLU GLY CYS THR GLY ALA SEQRES 34 A 518 LEU HIS ILE LEU ALA ARG ASP VAL HIS ASN ARG ILE VAL SEQRES 35 A 518 ILE ARG GLY LEU ASN THR ILE PRO LEU PHE VAL GLN LEU SEQRES 36 A 518 LEU TYR SER PRO ILE GLU ASN ILE GLN ARG VAL ALA ALA SEQRES 37 A 518 GLY VAL LEU CYS GLU LEU ALA GLN ASP LYS GLU ALA ALA SEQRES 38 A 518 GLU ALA ILE GLU ALA GLU GLY ALA THR ALA PRO LEU THR SEQRES 39 A 518 GLU LEU LEU HIS SER ARG ASN GLU GLY VAL ALA THR TYR SEQRES 40 A 518 ALA ALA ALA VAL LEU PHE ARG MET SER GLU ASP SEQRES 1 B 17 ARG ARG TRP PRO GLN MK8 ILE LEU ASP MK8 HIS VAL ARG SEQRES 2 B 17 ARG VAL TRP ARG MODRES 4DJS MK8 B 6 LEU 2-METHYL-L-NORLEUCINE MODRES 4DJS MK8 B 10 LEU 2-METHYL-L-NORLEUCINE HET MK8 B 6 9 HET MK8 B 10 9 HETNAM MK8 2-METHYL-L-NORLEUCINE FORMUL 2 MK8 2(C7 H15 N O2) HELIX 1 1 LEU A 148 ARG A 151 5 4 HELIX 2 2 ALA A 152 ASP A 162 1 11 HELIX 3 3 VAL A 166 LEU A 178 1 13 HELIX 4 4 LYS A 181 MET A 189 1 9 HELIX 5 5 SER A 191 THR A 205 1 15 HELIX 6 6 ASP A 207 SER A 222 1 16 HELIX 7 7 HIS A 224 SER A 234 1 11 HELIX 8 8 GLY A 235 LEU A 244 1 10 HELIX 9 9 VAL A 248 GLN A 266 1 19 HELIX 10 10 GLY A 268 ALA A 276 1 9 HELIX 11 11 GLY A 277 LEU A 285 1 9 HELIX 12 12 LEU A 286 LYS A 288 5 3 HELIX 13 13 ASN A 290 TYR A 306 1 17 HELIX 14 14 ASN A 308 SER A 318 1 11 HELIX 15 15 GLY A 319 ARG A 329 1 11 HELIX 16 16 TYR A 333 VAL A 349 1 17 HELIX 17 17 SER A 352 ALA A 360 1 9 HELIX 18 18 GLY A 361 GLY A 367 1 7 HELIX 19 19 LEU A 368 LEU A 370 5 3 HELIX 20 20 SER A 374 SER A 389 1 16 HELIX 21 21 MET A 398 LEU A 409 1 12 HELIX 22 22 ASP A 413 THR A 428 1 16 HELIX 23 23 ASN A 431 VAL A 441 1 11 HELIX 24 24 GLY A 442 GLY A 455 1 14 HELIX 25 25 ARG A 457 THR A 472 1 16 HELIX 26 26 GLU A 477 HIS A 488 1 12 HELIX 27 27 GLY A 490 LEU A 497 1 8 HELIX 28 28 HIS A 503 LEU A 519 1 17 HELIX 29 29 CYS A 520 ALA A 522 5 3 HELIX 30 30 ASN A 523 GLN A 530 1 8 HELIX 31 31 ILE A 533 ARG A 549 1 17 HELIX 32 32 ARG A 565 LEU A 580 1 16 HELIX 33 33 ASP A 583 GLY A 592 1 10 HELIX 34 34 THR A 595 LEU A 602 1 8 HELIX 35 35 LEU A 603 SER A 605 5 3 HELIX 36 36 ILE A 607 GLN A 623 1 17 HELIX 37 37 LYS A 625 GLY A 635 1 11 HELIX 38 38 ALA A 638 LEU A 643 1 6 HELIX 39 39 GLY A 650 GLU A 664 1 15 HELIX 40 40 GLN B 5 TRP B 16 1 12 LINK C GLN B 5 N MK8 B 6 1555 1555 1.37 LINK C MK8 B 6 N ILE B 7 1555 1555 1.30 LINK C ASP B 9 N MK8 B 10 1555 1555 1.34 LINK C MK8 B 10 N HIS B 11 1555 1555 1.26 LINK CE MK8 B 6 CE MK8 B 10 1555 1555 1.41 CISPEP 1 PRO A 500 PRO A 501 0 0.51 CISPEP 2 TRP B 3 PRO B 4 0 -1.07 SITE 1 AC1 17 HIS A 219 HIS A 223 PHE A 253 THR A 257 SITE 2 AC1 17 HIS A 260 ASN A 261 ASN A 290 LYS A 292 SITE 3 AC1 17 ILE A 296 ASP A 299 LYS A 335 GLU A 479 SITE 4 AC1 17 ASN A 483 ARG A 486 PRO A 521 GLU A 642 SITE 5 AC1 17 ARG A 647 CRYST1 63.060 74.808 135.714 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015858 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013368 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007368 0.00000