HEADER NUCLEOTIDE-BINDING PROTEIN 08-FEB-12 4DN0 TITLE PELD 156-455 FROM PSEUDOMONAS AERUGINOSA PA14 IN COMPLEX WITH C-DI-GMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN PELD; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SOLUBLE FRAGMENT; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 208963; SOURCE 4 STRAIN: UCBPP-PA14; SOURCE 5 GENE: PELD, PA14_24510; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GAF DOMAIN, GGDEF DOMAIN, C-DI-GMP RECEPTOR, BACTERIAL INNER KEYWDS 2 MEMBRANE, NUCLEOTIDE-BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.C.WHITNEY,K.M.COLVIN,L.S.MARMONT,H.ROBINSON,M.R.PARSEK,P.L.HOWELL REVDAT 4 28-FEB-24 4DN0 1 REMARK SEQADV HETSYN REVDAT 3 25-JUL-12 4DN0 1 JRNL REVDAT 2 30-MAY-12 4DN0 1 JRNL REVDAT 1 23-MAY-12 4DN0 0 JRNL AUTH J.C.WHITNEY,K.M.COLVIN,L.S.MARMONT,H.ROBINSON,M.R.PARSEK, JRNL AUTH 2 P.L.HOWELL JRNL TITL STRUCTURE OF THE CYTOPLASMIC REGION OF PELD, A DEGENERATE JRNL TITL 2 DIGUANYLATE CYCLASE RECEPTOR THAT REGULATES JRNL TITL 3 EXOPOLYSACCHARIDE PRODUCTION IN PSEUDOMONAS AERUGINOSA. JRNL REF J.BIOL.CHEM. V. 287 23582 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22605337 JRNL DOI 10.1074/JBC.M112.375378 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 14553 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1456 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.9131 - 4.9531 1.00 1423 159 0.2101 0.2529 REMARK 3 2 4.9531 - 3.9321 1.00 1341 149 0.1647 0.2036 REMARK 3 3 3.9321 - 3.4353 1.00 1320 147 0.1897 0.2309 REMARK 3 4 3.4353 - 3.1212 1.00 1322 146 0.2022 0.2533 REMARK 3 5 3.1212 - 2.8976 1.00 1295 145 0.2181 0.2735 REMARK 3 6 2.8976 - 2.7268 1.00 1292 143 0.2225 0.2946 REMARK 3 7 2.7268 - 2.5902 1.00 1301 145 0.2312 0.3266 REMARK 3 8 2.5902 - 2.4775 1.00 1285 142 0.2163 0.2739 REMARK 3 9 2.4775 - 2.3821 1.00 1302 144 0.2264 0.3225 REMARK 3 10 2.3821 - 2.3000 0.96 1216 136 0.2436 0.3190 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.30 REMARK 3 SHRINKAGE RADIUS : 1.06 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 49.49 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.790 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.620 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.21260 REMARK 3 B22 (A**2) : -4.54080 REMARK 3 B33 (A**2) : 4.75340 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2237 REMARK 3 ANGLE : 0.993 3058 REMARK 3 CHIRALITY : 0.061 363 REMARK 3 PLANARITY : 0.003 383 REMARK 3 DIHEDRAL : 14.350 807 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 158:318) REMARK 3 ORIGIN FOR THE GROUP (A): 7.1627 -17.9655 13.3080 REMARK 3 T TENSOR REMARK 3 T11: 0.2829 T22: 0.1661 REMARK 3 T33: 0.0621 T12: -0.0812 REMARK 3 T13: -0.0362 T23: -0.0210 REMARK 3 L TENSOR REMARK 3 L11: 3.6719 L22: 5.0099 REMARK 3 L33: 5.6693 L12: 0.5766 REMARK 3 L13: 0.0948 L23: -0.6731 REMARK 3 S TENSOR REMARK 3 S11: -0.0789 S12: 0.2453 S13: -0.1651 REMARK 3 S21: -0.8176 S22: -0.0553 S23: 0.4087 REMARK 3 S31: 0.7494 S32: -0.4015 S33: 0.0877 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 319:411) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3168 12.0079 6.8254 REMARK 3 T TENSOR REMARK 3 T11: 0.1488 T22: 0.2778 REMARK 3 T33: 0.2451 T12: -0.0527 REMARK 3 T13: 0.0155 T23: 0.0284 REMARK 3 L TENSOR REMARK 3 L11: 2.9091 L22: 6.4003 REMARK 3 L33: 2.6747 L12: -1.5352 REMARK 3 L13: 1.1578 L23: -2.4961 REMARK 3 S TENSOR REMARK 3 S11: 0.1008 S12: -0.0176 S13: -0.1332 REMARK 3 S21: 0.2019 S22: 0.0837 S23: 0.3684 REMARK 3 S31: 0.0773 S32: -0.0393 S33: -0.1773 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 412:455) REMARK 3 ORIGIN FOR THE GROUP (A): 14.9885 15.0558 10.9643 REMARK 3 T TENSOR REMARK 3 T11: 0.1121 T22: 0.1547 REMARK 3 T33: 0.2710 T12: 0.0162 REMARK 3 T13: 0.0503 T23: -0.0215 REMARK 3 L TENSOR REMARK 3 L11: 4.2883 L22: 3.6001 REMARK 3 L33: 6.9856 L12: 0.4434 REMARK 3 L13: 1.6332 L23: -1.9126 REMARK 3 S TENSOR REMARK 3 S11: 0.0801 S12: 0.1858 S13: -0.2186 REMARK 3 S21: 0.1805 S22: 0.0328 S23: -0.1568 REMARK 3 S31: 0.1658 S32: 0.2604 S33: -0.0524 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4DN0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000070532. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14553 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG 8000, 0.1M SODIUM CACODYLATE, REMARK 280 0.2M AMMONIUM SULFATE, PH 6.1, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.88800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.90400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.02150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.90400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.88800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.02150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 135 REMARK 465 GLY A 136 REMARK 465 SER A 137 REMARK 465 SER A 138 REMARK 465 HIS A 139 REMARK 465 HIS A 140 REMARK 465 HIS A 141 REMARK 465 HIS A 142 REMARK 465 HIS A 143 REMARK 465 HIS A 144 REMARK 465 SER A 145 REMARK 465 SER A 146 REMARK 465 GLY A 147 REMARK 465 LEU A 148 REMARK 465 VAL A 149 REMARK 465 PRO A 150 REMARK 465 ARG A 151 REMARK 465 GLY A 152 REMARK 465 SER A 153 REMARK 465 HIS A 154 REMARK 465 MET A 155 REMARK 465 ASN A 156 REMARK 465 ASP A 157 REMARK 465 LEU A 250 REMARK 465 GLU A 251 REMARK 465 ARG A 252 REMARK 465 GLY A 253 REMARK 465 GLU A 254 REMARK 465 GLN A 255 REMARK 465 ARG A 256 REMARK 465 ALA A 257 REMARK 465 HIS A 258 REMARK 465 SER A 259 REMARK 465 SER A 309 REMARK 465 ASP A 310 REMARK 465 ARG A 311 REMARK 465 ARG A 312 REMARK 465 ALA A 313 REMARK 465 LEU A 314 REMARK 465 GLN A 315 REMARK 465 LEU A 316 REMARK 465 ALA A 317 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 158 CG CD OE1 NE2 REMARK 470 ARG A 168 NE CZ NH1 NH2 REMARK 470 GLN A 169 CD OE1 NE2 REMARK 470 ARG A 172 NE CZ NH1 NH2 REMARK 470 ASP A 177 CG OD1 OD2 REMARK 470 GLU A 178 CD OE1 OE2 REMARK 470 GLN A 194 CG CD OE1 NE2 REMARK 470 ARG A 199 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 208 CG ND1 CD2 CE1 NE2 REMARK 470 GLN A 215 CG CD OE1 NE2 REMARK 470 GLU A 222 CG CD OE1 OE2 REMARK 470 ARG A 246 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 247 CD OE1 NE2 REMARK 470 GLU A 248 CG CD OE1 OE2 REMARK 470 LEU A 249 CG CD1 CD2 REMARK 470 ARG A 273 CD NE CZ NH1 NH2 REMARK 470 PHE A 285 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 291 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 319 CG1 CG2 CD1 REMARK 470 GLN A 322 CD OE1 NE2 REMARK 470 GLU A 394 CG CD OE1 OE2 REMARK 470 GLN A 413 CG CD OE1 NE2 REMARK 470 ARG A 423 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 435 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 374 O2 SO4 A 503 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 177 34.39 -67.48 REMARK 500 GLU A 178 131.02 178.78 REMARK 500 SER A 197 48.58 37.96 REMARK 500 LEU A 369 -39.81 89.31 REMARK 500 PHE A 443 -61.22 -94.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C2E A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C2E A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 505 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DMZ RELATED DB: PDB REMARK 900 APO FORM OF THE SAME PROTEIN DBREF 4DN0 A 156 455 UNP Q02PM6 Q02PM6_PSEAB 156 455 SEQADV 4DN0 MET A 135 UNP Q02PM6 EXPRESSION TAG SEQADV 4DN0 GLY A 136 UNP Q02PM6 EXPRESSION TAG SEQADV 4DN0 SER A 137 UNP Q02PM6 EXPRESSION TAG SEQADV 4DN0 SER A 138 UNP Q02PM6 EXPRESSION TAG SEQADV 4DN0 HIS A 139 UNP Q02PM6 EXPRESSION TAG SEQADV 4DN0 HIS A 140 UNP Q02PM6 EXPRESSION TAG SEQADV 4DN0 HIS A 141 UNP Q02PM6 EXPRESSION TAG SEQADV 4DN0 HIS A 142 UNP Q02PM6 EXPRESSION TAG SEQADV 4DN0 HIS A 143 UNP Q02PM6 EXPRESSION TAG SEQADV 4DN0 HIS A 144 UNP Q02PM6 EXPRESSION TAG SEQADV 4DN0 SER A 145 UNP Q02PM6 EXPRESSION TAG SEQADV 4DN0 SER A 146 UNP Q02PM6 EXPRESSION TAG SEQADV 4DN0 GLY A 147 UNP Q02PM6 EXPRESSION TAG SEQADV 4DN0 LEU A 148 UNP Q02PM6 EXPRESSION TAG SEQADV 4DN0 VAL A 149 UNP Q02PM6 EXPRESSION TAG SEQADV 4DN0 PRO A 150 UNP Q02PM6 EXPRESSION TAG SEQADV 4DN0 ARG A 151 UNP Q02PM6 EXPRESSION TAG SEQADV 4DN0 GLY A 152 UNP Q02PM6 EXPRESSION TAG SEQADV 4DN0 SER A 153 UNP Q02PM6 EXPRESSION TAG SEQADV 4DN0 HIS A 154 UNP Q02PM6 EXPRESSION TAG SEQADV 4DN0 MET A 155 UNP Q02PM6 EXPRESSION TAG SEQRES 1 A 321 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 321 LEU VAL PRO ARG GLY SER HIS MET ASN ASP GLN SER LEU SEQRES 3 A 321 ARG SER SER LEU LEU GLY LEU ARG GLN LEU LEU ARG GLU SEQRES 4 A 321 LEU PRO GLY ASP GLU ALA PRO LEU ASP ALA LEU ALA GLU SEQRES 5 A 321 THR VAL LEU ALA LEU LEU ALA GLN TYR GLY SER LEU ARG SEQRES 6 A 321 ILE ALA GLY LEU TYR ARG VAL ARG HIS ASP ARG THR PRO SEQRES 7 A 321 GLU PRO GLN PRO LEU ALA THR LEU GLY GLU MET PRO VAL SEQRES 8 A 321 LEU ASP ALA ASP ASP LEU LEU VAL ARG THR CYS LEU GLU SEQRES 9 A 321 ARG GLY GLU LEU VAL SER VAL ARG GLN GLU LEU LEU GLU SEQRES 10 A 321 ARG GLY GLU GLN ARG ALA HIS SER ALA LEU GLN VAL CYS SEQRES 11 A 321 VAL PRO LEU VAL ASP THR ASP GLY ARG ILE LEU ALA LEU SEQRES 12 A 321 LEU ALA VAL GLU GLN MET PRO PHE PHE VAL PHE ASN GLU SEQRES 13 A 321 ARG THR PHE SER LEU LEU ALA ILE LEU ALA GLY HIS ILE SEQRES 14 A 321 ALA ASP LEU LEU GLN SER ASP ARG ARG ALA LEU GLN LEU SEQRES 15 A 321 ALA ASP ILE ASP ALA GLN ARG PHE SER GLN TYR LEU LYS SEQRES 16 A 321 ARG SER LEU LEU ASP ALA ARG ASP HIS GLY LEU PRO ALA SEQRES 17 A 321 CYS LEU TYR ALA PHE GLU LEU THR ASP ALA ARG TYR GLY SEQRES 18 A 321 GLU GLU VAL GLN ARG LEU LEU GLU GLY SER GLN ARG GLY SEQRES 19 A 321 LEU ASP VAL GLN LEU ARG LEU ARG ASN ASP GLU GLY ARG SEQRES 20 A 321 ARG VAL LEU LEU VAL LEU LEU PRO LEU THR SER ALA GLU SEQRES 21 A 321 GLY SER GLN GLY TYR LEU GLN ARG LEU ARG ILE LEU PHE SEQRES 22 A 321 ALA GLU ARG PHE GLY GLN ALA ARG GLU LEU GLU SER LEU SEQRES 23 A 321 GLY VAL ARG ILE ARG GLN TYR GLU LEU ASP ALA GLY ASN SEQRES 24 A 321 ASP ARG GLN ALA LEU GLY HIS PHE LEU PHE ASN GLU CYS SEQRES 25 A 321 GLY LEU ASN ASP GLN GLN VAL ALA VAL HET C2E A 501 46 HET C2E A 502 46 HET SO4 A 503 5 HET NA A 504 1 HET NA A 505 1 HETNAM C2E 9,9'-[(2R,3R,3AS,5S,7AR,9R,10R,10AS,12S,14AR)-3,5,10, HETNAM 2 C2E 12-TETRAHYDROXY-5,12-DIOXIDOOCTAHYDRO-2H,7H-DIFURO[3, HETNAM 3 C2E 2-D:3',2'-J][1,3,7,9,2, HETNAM 4 C2E 8]TETRAOXADIPHOSPHACYCLODODECINE-2,9-DIYL]BIS(2-AMINO- HETNAM 5 C2E 1,9-DIHYDRO-6H-PURIN-6-ONE) HETNAM SO4 SULFATE ION HETNAM NA SODIUM ION HETSYN C2E C-DI-GMP; CYCLIC DIGUANOSINE MONOPHOSPHATE FORMUL 2 C2E 2(C20 H24 N10 O14 P2) FORMUL 4 SO4 O4 S 2- FORMUL 5 NA 2(NA 1+) FORMUL 7 HOH *44(H2 O) HELIX 1 1 GLN A 158 GLU A 173 1 16 HELIX 2 2 ALA A 179 GLY A 196 1 18 HELIX 3 3 ASP A 230 GLY A 240 1 11 HELIX 4 4 PRO A 284 PHE A 288 5 5 HELIX 5 5 ASN A 289 GLN A 308 1 20 HELIX 6 6 ILE A 319 GLY A 339 1 21 HELIX 7 7 ASP A 351 SER A 365 1 15 HELIX 8 8 SER A 392 GLY A 412 1 21 HELIX 9 9 GLU A 416 LEU A 420 5 5 HELIX 10 10 ASP A 434 PHE A 443 1 10 SHEET 1 A 5 ALA A 218 LEU A 220 0 SHEET 2 A 5 ILE A 200 ARG A 205 -1 N LEU A 203 O ALA A 218 SHEET 3 A 5 ILE A 274 GLN A 282 -1 O ALA A 279 N GLY A 202 SHEET 4 A 5 VAL A 263 VAL A 268 -1 N LEU A 267 O ALA A 276 SHEET 5 A 5 VAL A 243 SER A 244 -1 N VAL A 243 O CYS A 264 SHEET 1 B 4 VAL A 371 ARG A 376 0 SHEET 2 B 4 ARG A 382 LEU A 388 -1 O VAL A 383 N LEU A 375 SHEET 3 B 4 ALA A 342 LEU A 349 -1 N CYS A 343 O LEU A 388 SHEET 4 B 4 VAL A 422 LEU A 429 -1 O ARG A 425 N ALA A 346 LINK OE1 GLU A 348 NA NA A 504 1555 1555 2.83 SITE 1 AC1 12 ARG A 161 ARG A 367 ASP A 370 LEU A 388 SITE 2 AC1 12 THR A 391 GLY A 395 GLY A 398 TYR A 399 SITE 3 AC1 12 ARG A 402 C2E A 502 HOH A 611 HOH A 643 SITE 1 AC2 7 ARG A 161 LEU A 165 GLN A 366 ARG A 367 SITE 2 AC2 7 GLY A 368 ARG A 402 C2E A 501 SITE 1 AC3 3 ARG A 207 HIS A 208 ARG A 374 SITE 1 AC4 2 GLU A 348 ARG A 425 SITE 1 AC5 1 ASP A 450 CRYST1 41.776 82.043 91.808 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023937 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012189 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010892 0.00000