data_4DN8 # _entry.id 4DN8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4DN8 pdb_00004dn8 10.2210/pdb4dn8/pdb RCSB RCSB070540 ? ? WWPDB D_1000070540 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4DN8 _pdbx_database_status.recvd_initial_deposition_date 2012-02-08 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'van Eijk, M.' 1 'Rynkiewicz, M.J.' 2 'White, M.R.' 3 'Hartshorn, K.L.' 4 'Zou, X.' 5 'Schulten, K.' 6 'Luo, D.' 7 'Crouch, E.C.' 8 'Cafarella, T.M.' 9 'Head, J.F.' 10 'Haagsman, H.P.' 11 'Seaton, B.A.' 12 # _citation.id primary _citation.title 'A Unique Sugar-binding Site Mediates the Distinct Anti-influenza Activity of Pig Surfactant Protein D.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 287 _citation.page_first 26666 _citation.page_last 26677 _citation.year 2012 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22685299 _citation.pdbx_database_id_DOI 10.1074/jbc.M112.368571 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'van Eijk, M.' 1 ? primary 'Rynkiewicz, M.J.' 2 ? primary 'White, M.R.' 3 ? primary 'Hartshorn, K.L.' 4 ? primary 'Zou, X.' 5 ? primary 'Schulten, K.' 6 ? primary 'Luo, D.' 7 ? primary 'Crouch, E.C.' 8 ? primary 'Cafarella, T.R.' 9 ? primary 'Head, J.F.' 10 ? primary 'Haagsman, H.P.' 11 ? primary 'Seaton, B.A.' 12 ? # _cell.entry_id 4DN8 _cell.length_a 66.024 _cell.length_b 66.024 _cell.length_c 66.018 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4DN8 _symmetry.space_group_name_H-M 'P 63' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Pulmonary surfactant-associated protein D' 17057.996 1 ? N303Q 'neck and carbohydrate recognition domain, UNP residues 223-378' ? 2 non-polymer syn 'CALCIUM ION' 40.078 2 ? ? ? ? 3 non-polymer man beta-D-mannopyranose 180.156 1 ? ? ? ? 4 water nat water 18.015 36 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'PSP-D, SP-D, Lung surfactant protein D' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GITALRQQVETLQGQVQRLQKAFSQYKKVELFPNGRGVGEKIFKTGGFEKTFQDAQQVCTQAGGQMASPRSETENEALSQ LVTAQNKAAFLSMTDIKTEGQFTYPTGEPLVYANWAPGEPNNNGGSSGAENCVEIFPNGKWNDKACGELRLVICEF ; _entity_poly.pdbx_seq_one_letter_code_can ;GITALRQQVETLQGQVQRLQKAFSQYKKVELFPNGRGVGEKIFKTGGFEKTFQDAQQVCTQAGGQMASPRSETENEALSQ LVTAQNKAAFLSMTDIKTEGQFTYPTGEPLVYANWAPGEPNNNGGSSGAENCVEIFPNGKWNDKACGELRLVICEF ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ILE n 1 3 THR n 1 4 ALA n 1 5 LEU n 1 6 ARG n 1 7 GLN n 1 8 GLN n 1 9 VAL n 1 10 GLU n 1 11 THR n 1 12 LEU n 1 13 GLN n 1 14 GLY n 1 15 GLN n 1 16 VAL n 1 17 GLN n 1 18 ARG n 1 19 LEU n 1 20 GLN n 1 21 LYS n 1 22 ALA n 1 23 PHE n 1 24 SER n 1 25 GLN n 1 26 TYR n 1 27 LYS n 1 28 LYS n 1 29 VAL n 1 30 GLU n 1 31 LEU n 1 32 PHE n 1 33 PRO n 1 34 ASN n 1 35 GLY n 1 36 ARG n 1 37 GLY n 1 38 VAL n 1 39 GLY n 1 40 GLU n 1 41 LYS n 1 42 ILE n 1 43 PHE n 1 44 LYS n 1 45 THR n 1 46 GLY n 1 47 GLY n 1 48 PHE n 1 49 GLU n 1 50 LYS n 1 51 THR n 1 52 PHE n 1 53 GLN n 1 54 ASP n 1 55 ALA n 1 56 GLN n 1 57 GLN n 1 58 VAL n 1 59 CYS n 1 60 THR n 1 61 GLN n 1 62 ALA n 1 63 GLY n 1 64 GLY n 1 65 GLN n 1 66 MET n 1 67 ALA n 1 68 SER n 1 69 PRO n 1 70 ARG n 1 71 SER n 1 72 GLU n 1 73 THR n 1 74 GLU n 1 75 ASN n 1 76 GLU n 1 77 ALA n 1 78 LEU n 1 79 SER n 1 80 GLN n 1 81 LEU n 1 82 VAL n 1 83 THR n 1 84 ALA n 1 85 GLN n 1 86 ASN n 1 87 LYS n 1 88 ALA n 1 89 ALA n 1 90 PHE n 1 91 LEU n 1 92 SER n 1 93 MET n 1 94 THR n 1 95 ASP n 1 96 ILE n 1 97 LYS n 1 98 THR n 1 99 GLU n 1 100 GLY n 1 101 GLN n 1 102 PHE n 1 103 THR n 1 104 TYR n 1 105 PRO n 1 106 THR n 1 107 GLY n 1 108 GLU n 1 109 PRO n 1 110 LEU n 1 111 VAL n 1 112 TYR n 1 113 ALA n 1 114 ASN n 1 115 TRP n 1 116 ALA n 1 117 PRO n 1 118 GLY n 1 119 GLU n 1 120 PRO n 1 121 ASN n 1 122 ASN n 1 123 ASN n 1 124 GLY n 1 125 GLY n 1 126 SER n 1 127 SER n 1 128 GLY n 1 129 ALA n 1 130 GLU n 1 131 ASN n 1 132 CYS n 1 133 VAL n 1 134 GLU n 1 135 ILE n 1 136 PHE n 1 137 PRO n 1 138 ASN n 1 139 GLY n 1 140 LYS n 1 141 TRP n 1 142 ASN n 1 143 ASP n 1 144 LYS n 1 145 ALA n 1 146 CYS n 1 147 GLY n 1 148 GLU n 1 149 LEU n 1 150 ARG n 1 151 LEU n 1 152 VAL n 1 153 ILE n 1 154 CYS n 1 155 GLU n 1 156 PHE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'pigs,swine,wild boar' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene SFTPD _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Sus scrofa' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9823 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name human _entity_src_gen.pdbx_host_org_scientific_name 'Homo Sapiens' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 9606 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line HEK293 _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pUPE105.03 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SFTPD_PIG _struct_ref.pdbx_db_accession Q9N1X4 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GITALRQQVETLQGQVQRLQKAFSQYKKVELFPNGRGVGEKIFKTGGFEKTFQDAQQVCTQAGGQMASPRSETENEALSQ LVTAQNKAAFLSMTDIKTEGNFTYPTGEPLVYANWAPGEPNNNGGSSGAENCVEIFPNGKWNDKACGELRLVICEF ; _struct_ref.pdbx_align_begin 223 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4DN8 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 156 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9N1X4 _struct_ref_seq.db_align_beg 223 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 378 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 203 _struct_ref_seq.pdbx_auth_seq_align_end 355 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 4DN8 _struct_ref_seq_dif.mon_id GLN _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 101 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q9N1X4 _struct_ref_seq_dif.db_mon_id ASN _struct_ref_seq_dif.pdbx_seq_db_seq_num 323 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 303 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BMA 'D-saccharide, beta linking' . beta-D-mannopyranose 'beta-D-mannose; D-mannose; mannose' 'C6 H12 O6' 180.156 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4DN8 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.44 _exptl_crystal.density_percent_sol 49.49 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 290 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details ;12.3 mg/ml protein in 0.9 % sodium chloride, 5 mM EDTA, 15 mM calcium chloride, and 20 mM mannose was mixed with an equal volume of 0.1 M bistris (pH =6.5), 20% w/v PEG 3350, 200 mM magesium chloride, and 15% v/v glycerol. Prior to data collection crystals were soaked in a 30% w/v D-mannose solution., VAPOR DIFFUSION, HANGING DROP, temperature 290K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2010-10-25 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU300' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 4DN8 _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 15.0 _reflns.d_resolution_high 2.2 _reflns.number_obs 8327 _reflns.number_all 8327 _reflns.percent_possible_obs 99.50 _reflns.pdbx_Rmerge_I_obs 0.044 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 33.9 _reflns.B_iso_Wilson_estimate 46.21 _reflns.pdbx_redundancy 10.8 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.20 _reflns_shell.d_res_low 2.28 _reflns_shell.percent_possible_all 99.3 _reflns_shell.Rmerge_I_obs 0.418 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 7.25 _reflns_shell.pdbx_redundancy 9.4 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 839 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4DN8 _refine.ls_number_reflns_obs 8327 _refine.ls_number_reflns_all 8327 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 14.763 _refine.ls_d_res_high 2.2 _refine.ls_percent_reflns_obs 99.50 _refine.ls_R_factor_obs 0.2028 _refine.ls_R_factor_all 0.2028 _refine.ls_R_factor_R_work 0.1989 _refine.ls_R_factor_R_free 0.2373 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.93 _refine.ls_number_reflns_R_free 827 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] -2.4547 _refine.aniso_B[2][2] -2.4547 _refine.aniso_B[3][3] 4.9093 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.367 _refine.solvent_model_param_bsol 44.908 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'A complex of pig SPD and glycerol solved by molecular replacement in the same space group using human SPD (pdb code 2GGU B chain)' _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.33 _refine.pdbx_overall_phase_error 23.95 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1194 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 14 _refine_hist.number_atoms_solvent 36 _refine_hist.number_atoms_total 1244 _refine_hist.d_res_high 2.2 _refine_hist.d_res_low 14.763 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.002 ? ? 1244 ? 'X-RAY DIFFRACTION' f_angle_d 0.542 ? ? 1680 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 12.737 ? ? 464 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.038 ? ? 180 ? 'X-RAY DIFFRACTION' f_plane_restr 0.003 ? ? 226 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 2.1980 2.3352 1217 0.2699 97.00 0.3243 . . 136 . . . . 'X-RAY DIFFRACTION' . 2.3352 2.5146 1243 0.2355 100.00 0.3069 . . 133 . . . . 'X-RAY DIFFRACTION' . 2.5146 2.7662 1247 0.2357 100.00 0.2828 . . 141 . . . . 'X-RAY DIFFRACTION' . 2.7662 3.1631 1263 0.2192 100.00 0.2751 . . 137 . . . . 'X-RAY DIFFRACTION' . 3.1631 3.9722 1257 0.1937 100.00 0.2520 . . 139 . . . . 'X-RAY DIFFRACTION' . 3.9722 14.7635 1273 0.1716 100.00 0.1845 . . 141 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 4DN8 _struct.title 'Structure of porcine surfactant protein D neck and carbohydrate recognition domain complexed with mannose' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4DN8 _struct_keywords.pdbx_keywords 'SUGAR BINDING PROTEIN' _struct_keywords.text 'collectin, lectin, carbohydrate/sugar binding, lung surfactant, SUGAR BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ILE A 2 ? PHE A 32 ? ILE A 204 PHE A 234 1 ? 31 HELX_P HELX_P2 2 THR A 51 ? ALA A 62 ? THR A 253 ALA A 264 1 ? 12 HELX_P HELX_P3 3 SER A 71 ? ASN A 86 ? SER A 273 ASN A 288 1 ? 16 HELX_P HELX_P4 4 GLY A 124 ? GLY A 128 ? GLY A 326 GLY A 327 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 59 SG ? ? ? 1_555 A CYS 154 SG ? ? A CYS 261 A CYS 353 1_555 ? ? ? ? ? ? ? 2.028 ? ? disulf2 disulf ? ? A CYS 132 SG ? ? ? 1_555 A CYS 146 SG ? ? A CYS 331 A CYS 345 1_555 ? ? ? ? ? ? ? 2.042 ? ? metalc1 metalc ? ? A ASP 95 OD2 ? ? ? 1_555 B CA . CA ? ? A ASP 297 A CA 401 1_555 ? ? ? ? ? ? ? 2.896 ? ? metalc2 metalc ? ? A GLU 99 OE1 ? ? ? 1_555 B CA . CA ? ? A GLU 301 A CA 401 1_555 ? ? ? ? ? ? ? 2.921 ? ? metalc3 metalc ? ? A GLU 99 OE2 ? ? ? 1_555 B CA . CA ? ? A GLU 301 A CA 401 1_555 ? ? ? ? ? ? ? 3.020 ? ? metalc4 metalc ? ? A GLU 119 OE1 ? ? ? 1_555 C CA . CA ? ? A GLU 321 A CA 402 1_555 ? ? ? ? ? ? ? 2.917 ? ? metalc5 metalc ? ? A ASN 121 OD1 ? ? ? 1_555 C CA . CA ? ? A ASN 323 A CA 402 1_555 ? ? ? ? ? ? ? 2.837 ? ? metalc6 metalc ? ? A ASN 122 OD1 ? ? ? 1_555 B CA . CA ? ? A ASN 324 A CA 401 1_555 ? ? ? ? ? ? ? 2.986 ? ? metalc7 metalc ? ? A GLU 130 O ? ? ? 1_555 B CA . CA ? ? A GLU 329 A CA 401 1_555 ? ? ? ? ? ? ? 2.780 ? ? metalc8 metalc ? ? A GLU 130 OE1 ? ? ? 1_555 C CA . CA ? ? A GLU 329 A CA 402 1_555 ? ? ? ? ? ? ? 2.827 ? ? metalc9 metalc ? ? A ASN 131 OD1 ? ? ? 1_555 B CA . CA ? ? A ASN 330 A CA 401 1_555 ? ? ? ? ? ? ? 3.080 ? ? metalc10 metalc ? ? A ASN 142 OD1 ? ? ? 1_555 C CA . CA ? ? A ASN 341 A CA 402 1_555 ? ? ? ? ? ? ? 2.895 ? ? metalc11 metalc ? ? A ASP 143 OD1 ? ? ? 1_555 C CA . CA ? ? A ASP 342 A CA 402 1_555 ? ? ? ? ? ? ? 2.719 ? ? metalc12 metalc ? ? A ASP 143 O ? ? ? 1_555 C CA . CA ? ? A ASP 342 A CA 402 1_555 ? ? ? ? ? ? ? 2.880 ? ? metalc13 metalc ? ? C CA . CA ? ? ? 1_555 D BMA . O3 ? ? A CA 402 A BMA 403 1_555 ? ? ? ? ? ? ? 2.764 ? ? metalc14 metalc ? ? C CA . CA ? ? ? 1_555 D BMA . O4 ? ? A CA 402 A BMA 403 1_555 ? ? ? ? ? ? ? 2.889 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 PHE 32 A . ? PHE 234 A PRO 33 A ? PRO 235 A 1 0.36 2 GLU 119 A . ? GLU 321 A PRO 120 A ? PRO 322 A 1 -0.97 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLY A 35 ? VAL A 38 ? GLY A 237 VAL A 240 A 2 LYS A 41 ? LYS A 50 ? LYS A 243 LYS A 252 A 3 ARG A 150 ? PHE A 156 ? ARG A 349 PHE A 355 A 4 GLN A 65 ? MET A 66 ? GLN A 267 MET A 268 B 1 ALA A 89 ? THR A 94 ? ALA A 291 THR A 296 B 2 CYS A 132 ? ILE A 135 ? CYS A 331 ILE A 334 B 3 TRP A 141 ? LYS A 144 ? TRP A 340 LYS A 343 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ARG A 36 ? N ARG A 238 O PHE A 43 ? O PHE A 245 A 2 3 N LYS A 44 ? N LYS A 246 O CYS A 154 ? O CYS A 353 A 3 4 O GLU A 155 ? O GLU A 354 N GLN A 65 ? N GLN A 267 B 1 2 N LEU A 91 ? N LEU A 293 O VAL A 133 ? O VAL A 332 B 2 3 N GLU A 134 ? N GLU A 333 O ASN A 142 ? O ASN A 341 # _database_PDB_matrix.entry_id 4DN8 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4DN8 _atom_sites.fract_transf_matrix[1][1] 0.015146 _atom_sites.fract_transf_matrix[1][2] 0.008745 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017489 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015147 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 203 ? ? ? A . n A 1 2 ILE 2 204 204 ILE ILE A . n A 1 3 THR 3 205 205 THR THR A . n A 1 4 ALA 4 206 206 ALA ALA A . n A 1 5 LEU 5 207 207 LEU LEU A . n A 1 6 ARG 6 208 208 ARG ARG A . n A 1 7 GLN 7 209 209 GLN GLN A . n A 1 8 GLN 8 210 210 GLN GLN A . n A 1 9 VAL 9 211 211 VAL VAL A . n A 1 10 GLU 10 212 212 GLU GLU A . n A 1 11 THR 11 213 213 THR THR A . n A 1 12 LEU 12 214 214 LEU LEU A . n A 1 13 GLN 13 215 215 GLN GLN A . n A 1 14 GLY 14 216 216 GLY GLY A . n A 1 15 GLN 15 217 217 GLN GLN A . n A 1 16 VAL 16 218 218 VAL VAL A . n A 1 17 GLN 17 219 219 GLN GLN A . n A 1 18 ARG 18 220 220 ARG ARG A . n A 1 19 LEU 19 221 221 LEU LEU A . n A 1 20 GLN 20 222 222 GLN GLN A . n A 1 21 LYS 21 223 223 LYS LYS A . n A 1 22 ALA 22 224 224 ALA ALA A . n A 1 23 PHE 23 225 225 PHE PHE A . n A 1 24 SER 24 226 226 SER SER A . n A 1 25 GLN 25 227 227 GLN GLN A . n A 1 26 TYR 26 228 228 TYR TYR A . n A 1 27 LYS 27 229 229 LYS LYS A . n A 1 28 LYS 28 230 230 LYS LYS A . n A 1 29 VAL 29 231 231 VAL VAL A . n A 1 30 GLU 30 232 232 GLU GLU A . n A 1 31 LEU 31 233 233 LEU LEU A . n A 1 32 PHE 32 234 234 PHE PHE A . n A 1 33 PRO 33 235 235 PRO PRO A . n A 1 34 ASN 34 236 236 ASN ASN A . n A 1 35 GLY 35 237 237 GLY GLY A . n A 1 36 ARG 36 238 238 ARG ARG A . n A 1 37 GLY 37 239 239 GLY GLY A . n A 1 38 VAL 38 240 240 VAL VAL A . n A 1 39 GLY 39 241 241 GLY GLY A . n A 1 40 GLU 40 242 242 GLU GLU A . n A 1 41 LYS 41 243 243 LYS LYS A . n A 1 42 ILE 42 244 244 ILE ILE A . n A 1 43 PHE 43 245 245 PHE PHE A . n A 1 44 LYS 44 246 246 LYS LYS A . n A 1 45 THR 45 247 247 THR THR A . n A 1 46 GLY 46 248 248 GLY GLY A . n A 1 47 GLY 47 249 249 GLY GLY A . n A 1 48 PHE 48 250 250 PHE PHE A . n A 1 49 GLU 49 251 251 GLU GLU A . n A 1 50 LYS 50 252 252 LYS LYS A . n A 1 51 THR 51 253 253 THR THR A . n A 1 52 PHE 52 254 254 PHE PHE A . n A 1 53 GLN 53 255 255 GLN GLN A . n A 1 54 ASP 54 256 256 ASP ASP A . n A 1 55 ALA 55 257 257 ALA ALA A . n A 1 56 GLN 56 258 258 GLN GLN A . n A 1 57 GLN 57 259 259 GLN GLN A . n A 1 58 VAL 58 260 260 VAL VAL A . n A 1 59 CYS 59 261 261 CYS CYS A . n A 1 60 THR 60 262 262 THR THR A . n A 1 61 GLN 61 263 263 GLN GLN A . n A 1 62 ALA 62 264 264 ALA ALA A . n A 1 63 GLY 63 265 265 GLY GLY A . n A 1 64 GLY 64 266 266 GLY GLY A . n A 1 65 GLN 65 267 267 GLN GLN A . n A 1 66 MET 66 268 268 MET MET A . n A 1 67 ALA 67 269 269 ALA ALA A . n A 1 68 SER 68 270 270 SER SER A . n A 1 69 PRO 69 271 271 PRO PRO A . n A 1 70 ARG 70 272 272 ARG ARG A . n A 1 71 SER 71 273 273 SER SER A . n A 1 72 GLU 72 274 274 GLU GLU A . n A 1 73 THR 73 275 275 THR THR A . n A 1 74 GLU 74 276 276 GLU GLU A . n A 1 75 ASN 75 277 277 ASN ASN A . n A 1 76 GLU 76 278 278 GLU GLU A . n A 1 77 ALA 77 279 279 ALA ALA A . n A 1 78 LEU 78 280 280 LEU LEU A . n A 1 79 SER 79 281 281 SER SER A . n A 1 80 GLN 80 282 282 GLN GLN A . n A 1 81 LEU 81 283 283 LEU LEU A . n A 1 82 VAL 82 284 284 VAL VAL A . n A 1 83 THR 83 285 285 THR THR A . n A 1 84 ALA 84 286 286 ALA ALA A . n A 1 85 GLN 85 287 287 GLN GLN A . n A 1 86 ASN 86 288 288 ASN ASN A . n A 1 87 LYS 87 289 289 LYS LYS A . n A 1 88 ALA 88 290 290 ALA ALA A . n A 1 89 ALA 89 291 291 ALA ALA A . n A 1 90 PHE 90 292 292 PHE PHE A . n A 1 91 LEU 91 293 293 LEU LEU A . n A 1 92 SER 92 294 294 SER SER A . n A 1 93 MET 93 295 295 MET MET A . n A 1 94 THR 94 296 296 THR THR A . n A 1 95 ASP 95 297 297 ASP ASP A . n A 1 96 ILE 96 298 298 ILE ILE A . n A 1 97 LYS 97 299 299 LYS LYS A . n A 1 98 THR 98 300 300 THR THR A . n A 1 99 GLU 99 301 301 GLU GLU A . n A 1 100 GLY 100 302 302 GLY GLY A . n A 1 101 GLN 101 303 303 GLN GLN A . n A 1 102 PHE 102 304 304 PHE PHE A . n A 1 103 THR 103 305 305 THR THR A . n A 1 104 TYR 104 306 306 TYR TYR A . n A 1 105 PRO 105 307 307 PRO PRO A . n A 1 106 THR 106 308 308 THR THR A . n A 1 107 GLY 107 309 309 GLY GLY A . n A 1 108 GLU 108 310 310 GLU GLU A . n A 1 109 PRO 109 311 311 PRO PRO A . n A 1 110 LEU 110 312 312 LEU LEU A . n A 1 111 VAL 111 313 313 VAL VAL A . n A 1 112 TYR 112 314 314 TYR TYR A . n A 1 113 ALA 113 315 315 ALA ALA A . n A 1 114 ASN 114 316 316 ASN ASN A . n A 1 115 TRP 115 317 317 TRP TRP A . n A 1 116 ALA 116 318 318 ALA ALA A . n A 1 117 PRO 117 319 319 PRO PRO A . n A 1 118 GLY 118 320 320 GLY GLY A . n A 1 119 GLU 119 321 321 GLU GLU A . n A 1 120 PRO 120 322 322 PRO PRO A . n A 1 121 ASN 121 323 323 ASN ASN A . n A 1 122 ASN 122 324 324 ASN ASN A . n A 1 123 ASN 123 325 325 ASN ASN A . n A 1 124 GLY 124 326 326 GLY GLY A . n A 1 125 GLY 125 326 326 GLY GLY A A n A 1 126 SER 126 326 326 SER SER A B n A 1 127 SER 127 326 326 SER SER A C n A 1 128 GLY 128 327 327 GLY GLY A . n A 1 129 ALA 129 328 328 ALA ALA A . n A 1 130 GLU 130 329 329 GLU GLU A . n A 1 131 ASN 131 330 330 ASN ASN A . n A 1 132 CYS 132 331 331 CYS CYS A . n A 1 133 VAL 133 332 332 VAL VAL A . n A 1 134 GLU 134 333 333 GLU GLU A . n A 1 135 ILE 135 334 334 ILE ILE A . n A 1 136 PHE 136 335 335 PHE PHE A . n A 1 137 PRO 137 336 336 PRO PRO A . n A 1 138 ASN 138 337 337 ASN ASN A . n A 1 139 GLY 139 338 338 GLY GLY A . n A 1 140 LYS 140 339 339 LYS LYS A . n A 1 141 TRP 141 340 340 TRP TRP A . n A 1 142 ASN 142 341 341 ASN ASN A . n A 1 143 ASP 143 342 342 ASP ASP A . n A 1 144 LYS 144 343 343 LYS LYS A . n A 1 145 ALA 145 344 344 ALA ALA A . n A 1 146 CYS 146 345 345 CYS CYS A . n A 1 147 GLY 147 346 346 GLY GLY A . n A 1 148 GLU 148 347 347 GLU GLU A . n A 1 149 LEU 149 348 348 LEU LEU A . n A 1 150 ARG 150 349 349 ARG ARG A . n A 1 151 LEU 151 350 350 LEU LEU A . n A 1 152 VAL 152 351 351 VAL VAL A . n A 1 153 ILE 153 352 352 ILE ILE A . n A 1 154 CYS 154 353 353 CYS CYS A . n A 1 155 GLU 155 354 354 GLU GLU A . n A 1 156 PHE 156 355 355 PHE PHE A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA 1 401 1 CA CA A . C 2 CA 1 402 2 CA CA A . D 3 BMA 1 403 500 BMA MAN A . E 4 HOH 1 501 1 HOH HOH A . E 4 HOH 2 502 2 HOH HOH A . E 4 HOH 3 503 3 HOH HOH A . E 4 HOH 4 504 4 HOH HOH A . E 4 HOH 5 505 5 HOH HOH A . E 4 HOH 6 506 6 HOH HOH A . E 4 HOH 7 507 7 HOH HOH A . E 4 HOH 8 508 8 HOH HOH A . E 4 HOH 9 509 9 HOH HOH A . E 4 HOH 10 510 10 HOH HOH A . E 4 HOH 11 511 11 HOH HOH A . E 4 HOH 12 512 12 HOH HOH A . E 4 HOH 13 513 13 HOH HOH A . E 4 HOH 14 514 14 HOH HOH A . E 4 HOH 15 515 15 HOH HOH A . E 4 HOH 16 516 16 HOH HOH A . E 4 HOH 17 517 17 HOH HOH A . E 4 HOH 18 518 18 HOH HOH A . E 4 HOH 19 519 19 HOH HOH A . E 4 HOH 20 520 20 HOH HOH A . E 4 HOH 21 521 21 HOH HOH A . E 4 HOH 22 522 22 HOH HOH A . E 4 HOH 23 523 23 HOH HOH A . E 4 HOH 24 524 24 HOH HOH A . E 4 HOH 25 525 25 HOH HOH A . E 4 HOH 26 526 26 HOH HOH A . E 4 HOH 27 527 27 HOH HOH A . E 4 HOH 28 528 28 HOH HOH A . E 4 HOH 29 529 29 HOH HOH A . E 4 HOH 30 530 30 HOH HOH A . E 4 HOH 31 531 31 HOH HOH A . E 4 HOH 32 532 32 HOH HOH A . E 4 HOH 33 533 33 HOH HOH A . E 4 HOH 34 534 34 HOH HOH A . E 4 HOH 35 535 35 HOH HOH A . E 4 HOH 36 536 36 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 7120 ? 1 MORE -111 ? 1 'SSA (A^2)' 21870 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5000000000 -0.8660254038 0.0000000000 33.0120000000 0.8660254038 -0.5000000000 0.0000000000 57.1784612595 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5000000000 0.8660254038 0.0000000000 -33.0120000000 -0.8660254038 -0.5000000000 0.0000000000 57.1784612595 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD2 ? A ASP 95 ? A ASP 297 ? 1_555 CA ? B CA . ? A CA 401 ? 1_555 OE1 ? A GLU 99 ? A GLU 301 ? 1_555 70.1 ? 2 OD2 ? A ASP 95 ? A ASP 297 ? 1_555 CA ? B CA . ? A CA 401 ? 1_555 OE2 ? A GLU 99 ? A GLU 301 ? 1_555 64.0 ? 3 OE1 ? A GLU 99 ? A GLU 301 ? 1_555 CA ? B CA . ? A CA 401 ? 1_555 OE2 ? A GLU 99 ? A GLU 301 ? 1_555 43.4 ? 4 OD2 ? A ASP 95 ? A ASP 297 ? 1_555 CA ? B CA . ? A CA 401 ? 1_555 OD1 ? A ASN 122 ? A ASN 324 ? 1_555 160.4 ? 5 OE1 ? A GLU 99 ? A GLU 301 ? 1_555 CA ? B CA . ? A CA 401 ? 1_555 OD1 ? A ASN 122 ? A ASN 324 ? 1_555 93.6 ? 6 OE2 ? A GLU 99 ? A GLU 301 ? 1_555 CA ? B CA . ? A CA 401 ? 1_555 OD1 ? A ASN 122 ? A ASN 324 ? 1_555 96.8 ? 7 OD2 ? A ASP 95 ? A ASP 297 ? 1_555 CA ? B CA . ? A CA 401 ? 1_555 O ? A GLU 130 ? A GLU 329 ? 1_555 123.0 ? 8 OE1 ? A GLU 99 ? A GLU 301 ? 1_555 CA ? B CA . ? A CA 401 ? 1_555 O ? A GLU 130 ? A GLU 329 ? 1_555 159.5 ? 9 OE2 ? A GLU 99 ? A GLU 301 ? 1_555 CA ? B CA . ? A CA 401 ? 1_555 O ? A GLU 130 ? A GLU 329 ? 1_555 153.8 ? 10 OD1 ? A ASN 122 ? A ASN 324 ? 1_555 CA ? B CA . ? A CA 401 ? 1_555 O ? A GLU 130 ? A GLU 329 ? 1_555 75.9 ? 11 OD2 ? A ASP 95 ? A ASP 297 ? 1_555 CA ? B CA . ? A CA 401 ? 1_555 OD1 ? A ASN 131 ? A ASN 330 ? 1_555 96.8 ? 12 OE1 ? A GLU 99 ? A GLU 301 ? 1_555 CA ? B CA . ? A CA 401 ? 1_555 OD1 ? A ASN 131 ? A ASN 330 ? 1_555 118.1 ? 13 OE2 ? A GLU 99 ? A GLU 301 ? 1_555 CA ? B CA . ? A CA 401 ? 1_555 OD1 ? A ASN 131 ? A ASN 330 ? 1_555 75.8 ? 14 OD1 ? A ASN 122 ? A ASN 324 ? 1_555 CA ? B CA . ? A CA 401 ? 1_555 OD1 ? A ASN 131 ? A ASN 330 ? 1_555 81.0 ? 15 O ? A GLU 130 ? A GLU 329 ? 1_555 CA ? B CA . ? A CA 401 ? 1_555 OD1 ? A ASN 131 ? A ASN 330 ? 1_555 78.2 ? 16 OE1 ? A GLU 119 ? A GLU 321 ? 1_555 CA ? C CA . ? A CA 402 ? 1_555 OD1 ? A ASN 121 ? A ASN 323 ? 1_555 86.4 ? 17 OE1 ? A GLU 119 ? A GLU 321 ? 1_555 CA ? C CA . ? A CA 402 ? 1_555 OE1 ? A GLU 130 ? A GLU 329 ? 1_555 145.1 ? 18 OD1 ? A ASN 121 ? A ASN 323 ? 1_555 CA ? C CA . ? A CA 402 ? 1_555 OE1 ? A GLU 130 ? A GLU 329 ? 1_555 70.4 ? 19 OE1 ? A GLU 119 ? A GLU 321 ? 1_555 CA ? C CA . ? A CA 402 ? 1_555 OD1 ? A ASN 142 ? A ASN 341 ? 1_555 66.2 ? 20 OD1 ? A ASN 121 ? A ASN 323 ? 1_555 CA ? C CA . ? A CA 402 ? 1_555 OD1 ? A ASN 142 ? A ASN 341 ? 1_555 150.3 ? 21 OE1 ? A GLU 130 ? A GLU 329 ? 1_555 CA ? C CA . ? A CA 402 ? 1_555 OD1 ? A ASN 142 ? A ASN 341 ? 1_555 139.2 ? 22 OE1 ? A GLU 119 ? A GLU 321 ? 1_555 CA ? C CA . ? A CA 402 ? 1_555 OD1 ? A ASP 143 ? A ASP 342 ? 1_555 58.9 ? 23 OD1 ? A ASN 121 ? A ASN 323 ? 1_555 CA ? C CA . ? A CA 402 ? 1_555 OD1 ? A ASP 143 ? A ASP 342 ? 1_555 93.6 ? 24 OE1 ? A GLU 130 ? A GLU 329 ? 1_555 CA ? C CA . ? A CA 402 ? 1_555 OD1 ? A ASP 143 ? A ASP 342 ? 1_555 95.8 ? 25 OD1 ? A ASN 142 ? A ASN 341 ? 1_555 CA ? C CA . ? A CA 402 ? 1_555 OD1 ? A ASP 143 ? A ASP 342 ? 1_555 82.3 ? 26 OE1 ? A GLU 119 ? A GLU 321 ? 1_555 CA ? C CA . ? A CA 402 ? 1_555 O ? A ASP 143 ? A ASP 342 ? 1_555 111.9 ? 27 OD1 ? A ASN 121 ? A ASN 323 ? 1_555 CA ? C CA . ? A CA 402 ? 1_555 O ? A ASP 143 ? A ASP 342 ? 1_555 135.8 ? 28 OE1 ? A GLU 130 ? A GLU 329 ? 1_555 CA ? C CA . ? A CA 402 ? 1_555 O ? A ASP 143 ? A ASP 342 ? 1_555 72.7 ? 29 OD1 ? A ASN 142 ? A ASN 341 ? 1_555 CA ? C CA . ? A CA 402 ? 1_555 O ? A ASP 143 ? A ASP 342 ? 1_555 69.2 ? 30 OD1 ? A ASP 143 ? A ASP 342 ? 1_555 CA ? C CA . ? A CA 402 ? 1_555 O ? A ASP 143 ? A ASP 342 ? 1_555 66.6 ? 31 OE1 ? A GLU 119 ? A GLU 321 ? 1_555 CA ? C CA . ? A CA 402 ? 1_555 O3 ? D BMA . ? A BMA 403 ? 1_555 86.6 ? 32 OD1 ? A ASN 121 ? A ASN 323 ? 1_555 CA ? C CA . ? A CA 402 ? 1_555 O3 ? D BMA . ? A BMA 403 ? 1_555 91.3 ? 33 OE1 ? A GLU 130 ? A GLU 329 ? 1_555 CA ? C CA . ? A CA 402 ? 1_555 O3 ? D BMA . ? A BMA 403 ? 1_555 118.7 ? 34 OD1 ? A ASN 142 ? A ASN 341 ? 1_555 CA ? C CA . ? A CA 402 ? 1_555 O3 ? D BMA . ? A BMA 403 ? 1_555 76.4 ? 35 OD1 ? A ASP 143 ? A ASP 342 ? 1_555 CA ? C CA . ? A CA 402 ? 1_555 O3 ? D BMA . ? A BMA 403 ? 1_555 144.7 ? 36 O ? A ASP 143 ? A ASP 342 ? 1_555 CA ? C CA . ? A CA 402 ? 1_555 O3 ? D BMA . ? A BMA 403 ? 1_555 128.1 ? 37 OE1 ? A GLU 119 ? A GLU 321 ? 1_555 CA ? C CA . ? A CA 402 ? 1_555 O4 ? D BMA . ? A BMA 403 ? 1_555 146.6 ? 38 OD1 ? A ASN 121 ? A ASN 323 ? 1_555 CA ? C CA . ? A CA 402 ? 1_555 O4 ? D BMA . ? A BMA 403 ? 1_555 107.0 ? 39 OE1 ? A GLU 130 ? A GLU 329 ? 1_555 CA ? C CA . ? A CA 402 ? 1_555 O4 ? D BMA . ? A BMA 403 ? 1_555 67.6 ? 40 OD1 ? A ASN 142 ? A ASN 341 ? 1_555 CA ? C CA . ? A CA 402 ? 1_555 O4 ? D BMA . ? A BMA 403 ? 1_555 91.7 ? 41 OD1 ? A ASP 143 ? A ASP 342 ? 1_555 CA ? C CA . ? A CA 402 ? 1_555 O4 ? D BMA . ? A BMA 403 ? 1_555 146.1 ? 42 O ? A ASP 143 ? A ASP 342 ? 1_555 CA ? C CA . ? A CA 402 ? 1_555 O4 ? D BMA . ? A BMA 403 ? 1_555 80.0 ? 43 O3 ? D BMA . ? A BMA 403 ? 1_555 CA ? C CA . ? A CA 402 ? 1_555 O4 ? D BMA . ? A BMA 403 ? 1_555 63.1 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-06-20 2 'Structure model' 1 1 2012-08-22 3 'Structure model' 1 2 2020-07-29 4 'Structure model' 1 3 2021-05-19 5 'Structure model' 1 4 2023-09-13 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 3 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' 6 3 'Structure model' 'Structure summary' 7 4 'Structure model' 'Source and taxonomy' 8 4 'Structure model' 'Structure summary' 9 5 'Structure model' Advisory 10 5 'Structure model' 'Data collection' 11 5 'Structure model' 'Database references' 12 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp 2 3 'Structure model' entity 3 3 'Structure model' pdbx_chem_comp_identifier 4 3 'Structure model' pdbx_entity_nonpoly 5 3 'Structure model' pdbx_struct_conn_angle 6 3 'Structure model' pdbx_unobs_or_zero_occ_atoms 7 3 'Structure model' struct_conn 8 3 'Structure model' struct_ref_seq_dif 9 3 'Structure model' struct_site 10 3 'Structure model' struct_site_gen 11 4 'Structure model' chem_comp 12 4 'Structure model' entity_src_gen 13 5 'Structure model' chem_comp_atom 14 5 'Structure model' chem_comp_bond 15 5 'Structure model' database_2 16 5 'Structure model' pdbx_initial_refinement_model 17 5 'Structure model' pdbx_unobs_or_zero_occ_atoms # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_chem_comp.name' 2 3 'Structure model' '_chem_comp.type' 3 3 'Structure model' '_entity.pdbx_description' 4 3 'Structure model' '_pdbx_entity_nonpoly.name' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 18 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 19 3 'Structure model' '_pdbx_struct_conn_angle.value' 20 3 'Structure model' '_struct_conn.pdbx_dist_value' 21 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 22 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 23 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 24 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 25 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 26 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 27 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 28 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 29 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 30 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 31 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 32 3 'Structure model' '_struct_ref_seq_dif.details' 33 4 'Structure model' '_chem_comp.pdbx_synonyms' 34 4 'Structure model' '_entity_src_gen.host_org_common_name' 35 4 'Structure model' '_entity_src_gen.pdbx_host_org_strain' 36 5 'Structure model' '_database_2.pdbx_DOI' 37 5 'Structure model' '_database_2.pdbx_database_accession' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -2.5959 42.8125 12.1843 0.4384 0.4048 0.2600 -0.0112 -0.0379 0.0317 0.4109 0.5763 0.8532 -0.1644 0.4669 0.6880 -0.1946 0.2621 0.1379 -0.1739 0.0337 -0.1368 -0.7091 0.6193 0.1230 'X-RAY DIFFRACTION' 2 ? refined 20.9804 40.0973 38.0508 0.3752 0.3700 0.5738 0.0492 -0.2223 0.0262 6.8690 3.2034 1.8274 -2.8232 1.3160 -1.2058 -0.6978 -0.5216 1.1124 0.4255 0.2142 -1.0576 -0.2672 0.1243 0.5959 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? '(chain A and resid 204:236)' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? '(chain A and resid 237:355)' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CrystalClear 'data collection' . ? 1 PHASER phasing . ? 2 PHENIX refinement '(phenix.refine: 1.6.3_473)' ? 3 DENZO 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 270 ? ? -114.90 79.54 2 1 ASN A 316 ? ? -142.89 53.85 # _pdbx_unobs_or_zero_occ_atoms.id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1 _pdbx_unobs_or_zero_occ_atoms.polymer_flag Y _pdbx_unobs_or_zero_occ_atoms.occupancy_flag 0 _pdbx_unobs_or_zero_occ_atoms.auth_asym_id A _pdbx_unobs_or_zero_occ_atoms.auth_comp_id GLU _pdbx_unobs_or_zero_occ_atoms.auth_seq_id 310 _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ? _pdbx_unobs_or_zero_occ_atoms.auth_atom_id CD _pdbx_unobs_or_zero_occ_atoms.label_alt_id ? _pdbx_unobs_or_zero_occ_atoms.label_asym_id A _pdbx_unobs_or_zero_occ_atoms.label_comp_id GLU _pdbx_unobs_or_zero_occ_atoms.label_seq_id 108 _pdbx_unobs_or_zero_occ_atoms.label_atom_id CD # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id GLY _pdbx_unobs_or_zero_occ_residues.auth_seq_id 203 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id GLY _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 BMA C1 C N R 74 BMA C2 C N S 75 BMA C3 C N S 76 BMA C4 C N S 77 BMA C5 C N R 78 BMA C6 C N N 79 BMA O1 O N N 80 BMA O2 O N N 81 BMA O3 O N N 82 BMA O4 O N N 83 BMA O5 O N N 84 BMA O6 O N N 85 BMA H1 H N N 86 BMA H2 H N N 87 BMA H3 H N N 88 BMA H4 H N N 89 BMA H5 H N N 90 BMA H61 H N N 91 BMA H62 H N N 92 BMA HO1 H N N 93 BMA HO2 H N N 94 BMA HO3 H N N 95 BMA HO4 H N N 96 BMA HO6 H N N 97 CA CA CA N N 98 CYS N N N N 99 CYS CA C N R 100 CYS C C N N 101 CYS O O N N 102 CYS CB C N N 103 CYS SG S N N 104 CYS OXT O N N 105 CYS H H N N 106 CYS H2 H N N 107 CYS HA H N N 108 CYS HB2 H N N 109 CYS HB3 H N N 110 CYS HG H N N 111 CYS HXT H N N 112 GLN N N N N 113 GLN CA C N S 114 GLN C C N N 115 GLN O O N N 116 GLN CB C N N 117 GLN CG C N N 118 GLN CD C N N 119 GLN OE1 O N N 120 GLN NE2 N N N 121 GLN OXT O N N 122 GLN H H N N 123 GLN H2 H N N 124 GLN HA H N N 125 GLN HB2 H N N 126 GLN HB3 H N N 127 GLN HG2 H N N 128 GLN HG3 H N N 129 GLN HE21 H N N 130 GLN HE22 H N N 131 GLN HXT H N N 132 GLU N N N N 133 GLU CA C N S 134 GLU C C N N 135 GLU O O N N 136 GLU CB C N N 137 GLU CG C N N 138 GLU CD C N N 139 GLU OE1 O N N 140 GLU OE2 O N N 141 GLU OXT O N N 142 GLU H H N N 143 GLU H2 H N N 144 GLU HA H N N 145 GLU HB2 H N N 146 GLU HB3 H N N 147 GLU HG2 H N N 148 GLU HG3 H N N 149 GLU HE2 H N N 150 GLU HXT H N N 151 GLY N N N N 152 GLY CA C N N 153 GLY C C N N 154 GLY O O N N 155 GLY OXT O N N 156 GLY H H N N 157 GLY H2 H N N 158 GLY HA2 H N N 159 GLY HA3 H N N 160 GLY HXT H N N 161 HOH O O N N 162 HOH H1 H N N 163 HOH H2 H N N 164 ILE N N N N 165 ILE CA C N S 166 ILE C C N N 167 ILE O O N N 168 ILE CB C N S 169 ILE CG1 C N N 170 ILE CG2 C N N 171 ILE CD1 C N N 172 ILE OXT O N N 173 ILE H H N N 174 ILE H2 H N N 175 ILE HA H N N 176 ILE HB H N N 177 ILE HG12 H N N 178 ILE HG13 H N N 179 ILE HG21 H N N 180 ILE HG22 H N N 181 ILE HG23 H N N 182 ILE HD11 H N N 183 ILE HD12 H N N 184 ILE HD13 H N N 185 ILE HXT H N N 186 LEU N N N N 187 LEU CA C N S 188 LEU C C N N 189 LEU O O N N 190 LEU CB C N N 191 LEU CG C N N 192 LEU CD1 C N N 193 LEU CD2 C N N 194 LEU OXT O N N 195 LEU H H N N 196 LEU H2 H N N 197 LEU HA H N N 198 LEU HB2 H N N 199 LEU HB3 H N N 200 LEU HG H N N 201 LEU HD11 H N N 202 LEU HD12 H N N 203 LEU HD13 H N N 204 LEU HD21 H N N 205 LEU HD22 H N N 206 LEU HD23 H N N 207 LEU HXT H N N 208 LYS N N N N 209 LYS CA C N S 210 LYS C C N N 211 LYS O O N N 212 LYS CB C N N 213 LYS CG C N N 214 LYS CD C N N 215 LYS CE C N N 216 LYS NZ N N N 217 LYS OXT O N N 218 LYS H H N N 219 LYS H2 H N N 220 LYS HA H N N 221 LYS HB2 H N N 222 LYS HB3 H N N 223 LYS HG2 H N N 224 LYS HG3 H N N 225 LYS HD2 H N N 226 LYS HD3 H N N 227 LYS HE2 H N N 228 LYS HE3 H N N 229 LYS HZ1 H N N 230 LYS HZ2 H N N 231 LYS HZ3 H N N 232 LYS HXT H N N 233 MET N N N N 234 MET CA C N S 235 MET C C N N 236 MET O O N N 237 MET CB C N N 238 MET CG C N N 239 MET SD S N N 240 MET CE C N N 241 MET OXT O N N 242 MET H H N N 243 MET H2 H N N 244 MET HA H N N 245 MET HB2 H N N 246 MET HB3 H N N 247 MET HG2 H N N 248 MET HG3 H N N 249 MET HE1 H N N 250 MET HE2 H N N 251 MET HE3 H N N 252 MET HXT H N N 253 PHE N N N N 254 PHE CA C N S 255 PHE C C N N 256 PHE O O N N 257 PHE CB C N N 258 PHE CG C Y N 259 PHE CD1 C Y N 260 PHE CD2 C Y N 261 PHE CE1 C Y N 262 PHE CE2 C Y N 263 PHE CZ C Y N 264 PHE OXT O N N 265 PHE H H N N 266 PHE H2 H N N 267 PHE HA H N N 268 PHE HB2 H N N 269 PHE HB3 H N N 270 PHE HD1 H N N 271 PHE HD2 H N N 272 PHE HE1 H N N 273 PHE HE2 H N N 274 PHE HZ H N N 275 PHE HXT H N N 276 PRO N N N N 277 PRO CA C N S 278 PRO C C N N 279 PRO O O N N 280 PRO CB C N N 281 PRO CG C N N 282 PRO CD C N N 283 PRO OXT O N N 284 PRO H H N N 285 PRO HA H N N 286 PRO HB2 H N N 287 PRO HB3 H N N 288 PRO HG2 H N N 289 PRO HG3 H N N 290 PRO HD2 H N N 291 PRO HD3 H N N 292 PRO HXT H N N 293 SER N N N N 294 SER CA C N S 295 SER C C N N 296 SER O O N N 297 SER CB C N N 298 SER OG O N N 299 SER OXT O N N 300 SER H H N N 301 SER H2 H N N 302 SER HA H N N 303 SER HB2 H N N 304 SER HB3 H N N 305 SER HG H N N 306 SER HXT H N N 307 THR N N N N 308 THR CA C N S 309 THR C C N N 310 THR O O N N 311 THR CB C N R 312 THR OG1 O N N 313 THR CG2 C N N 314 THR OXT O N N 315 THR H H N N 316 THR H2 H N N 317 THR HA H N N 318 THR HB H N N 319 THR HG1 H N N 320 THR HG21 H N N 321 THR HG22 H N N 322 THR HG23 H N N 323 THR HXT H N N 324 TRP N N N N 325 TRP CA C N S 326 TRP C C N N 327 TRP O O N N 328 TRP CB C N N 329 TRP CG C Y N 330 TRP CD1 C Y N 331 TRP CD2 C Y N 332 TRP NE1 N Y N 333 TRP CE2 C Y N 334 TRP CE3 C Y N 335 TRP CZ2 C Y N 336 TRP CZ3 C Y N 337 TRP CH2 C Y N 338 TRP OXT O N N 339 TRP H H N N 340 TRP H2 H N N 341 TRP HA H N N 342 TRP HB2 H N N 343 TRP HB3 H N N 344 TRP HD1 H N N 345 TRP HE1 H N N 346 TRP HE3 H N N 347 TRP HZ2 H N N 348 TRP HZ3 H N N 349 TRP HH2 H N N 350 TRP HXT H N N 351 TYR N N N N 352 TYR CA C N S 353 TYR C C N N 354 TYR O O N N 355 TYR CB C N N 356 TYR CG C Y N 357 TYR CD1 C Y N 358 TYR CD2 C Y N 359 TYR CE1 C Y N 360 TYR CE2 C Y N 361 TYR CZ C Y N 362 TYR OH O N N 363 TYR OXT O N N 364 TYR H H N N 365 TYR H2 H N N 366 TYR HA H N N 367 TYR HB2 H N N 368 TYR HB3 H N N 369 TYR HD1 H N N 370 TYR HD2 H N N 371 TYR HE1 H N N 372 TYR HE2 H N N 373 TYR HH H N N 374 TYR HXT H N N 375 VAL N N N N 376 VAL CA C N S 377 VAL C C N N 378 VAL O O N N 379 VAL CB C N N 380 VAL CG1 C N N 381 VAL CG2 C N N 382 VAL OXT O N N 383 VAL H H N N 384 VAL H2 H N N 385 VAL HA H N N 386 VAL HB H N N 387 VAL HG11 H N N 388 VAL HG12 H N N 389 VAL HG13 H N N 390 VAL HG21 H N N 391 VAL HG22 H N N 392 VAL HG23 H N N 393 VAL HXT H N N 394 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 BMA C1 C2 sing N N 70 BMA C1 O1 sing N N 71 BMA C1 O5 sing N N 72 BMA C1 H1 sing N N 73 BMA C2 C3 sing N N 74 BMA C2 O2 sing N N 75 BMA C2 H2 sing N N 76 BMA C3 C4 sing N N 77 BMA C3 O3 sing N N 78 BMA C3 H3 sing N N 79 BMA C4 C5 sing N N 80 BMA C4 O4 sing N N 81 BMA C4 H4 sing N N 82 BMA C5 C6 sing N N 83 BMA C5 O5 sing N N 84 BMA C5 H5 sing N N 85 BMA C6 O6 sing N N 86 BMA C6 H61 sing N N 87 BMA C6 H62 sing N N 88 BMA O1 HO1 sing N N 89 BMA O2 HO2 sing N N 90 BMA O3 HO3 sing N N 91 BMA O4 HO4 sing N N 92 BMA O6 HO6 sing N N 93 CYS N CA sing N N 94 CYS N H sing N N 95 CYS N H2 sing N N 96 CYS CA C sing N N 97 CYS CA CB sing N N 98 CYS CA HA sing N N 99 CYS C O doub N N 100 CYS C OXT sing N N 101 CYS CB SG sing N N 102 CYS CB HB2 sing N N 103 CYS CB HB3 sing N N 104 CYS SG HG sing N N 105 CYS OXT HXT sing N N 106 GLN N CA sing N N 107 GLN N H sing N N 108 GLN N H2 sing N N 109 GLN CA C sing N N 110 GLN CA CB sing N N 111 GLN CA HA sing N N 112 GLN C O doub N N 113 GLN C OXT sing N N 114 GLN CB CG sing N N 115 GLN CB HB2 sing N N 116 GLN CB HB3 sing N N 117 GLN CG CD sing N N 118 GLN CG HG2 sing N N 119 GLN CG HG3 sing N N 120 GLN CD OE1 doub N N 121 GLN CD NE2 sing N N 122 GLN NE2 HE21 sing N N 123 GLN NE2 HE22 sing N N 124 GLN OXT HXT sing N N 125 GLU N CA sing N N 126 GLU N H sing N N 127 GLU N H2 sing N N 128 GLU CA C sing N N 129 GLU CA CB sing N N 130 GLU CA HA sing N N 131 GLU C O doub N N 132 GLU C OXT sing N N 133 GLU CB CG sing N N 134 GLU CB HB2 sing N N 135 GLU CB HB3 sing N N 136 GLU CG CD sing N N 137 GLU CG HG2 sing N N 138 GLU CG HG3 sing N N 139 GLU CD OE1 doub N N 140 GLU CD OE2 sing N N 141 GLU OE2 HE2 sing N N 142 GLU OXT HXT sing N N 143 GLY N CA sing N N 144 GLY N H sing N N 145 GLY N H2 sing N N 146 GLY CA C sing N N 147 GLY CA HA2 sing N N 148 GLY CA HA3 sing N N 149 GLY C O doub N N 150 GLY C OXT sing N N 151 GLY OXT HXT sing N N 152 HOH O H1 sing N N 153 HOH O H2 sing N N 154 ILE N CA sing N N 155 ILE N H sing N N 156 ILE N H2 sing N N 157 ILE CA C sing N N 158 ILE CA CB sing N N 159 ILE CA HA sing N N 160 ILE C O doub N N 161 ILE C OXT sing N N 162 ILE CB CG1 sing N N 163 ILE CB CG2 sing N N 164 ILE CB HB sing N N 165 ILE CG1 CD1 sing N N 166 ILE CG1 HG12 sing N N 167 ILE CG1 HG13 sing N N 168 ILE CG2 HG21 sing N N 169 ILE CG2 HG22 sing N N 170 ILE CG2 HG23 sing N N 171 ILE CD1 HD11 sing N N 172 ILE CD1 HD12 sing N N 173 ILE CD1 HD13 sing N N 174 ILE OXT HXT sing N N 175 LEU N CA sing N N 176 LEU N H sing N N 177 LEU N H2 sing N N 178 LEU CA C sing N N 179 LEU CA CB sing N N 180 LEU CA HA sing N N 181 LEU C O doub N N 182 LEU C OXT sing N N 183 LEU CB CG sing N N 184 LEU CB HB2 sing N N 185 LEU CB HB3 sing N N 186 LEU CG CD1 sing N N 187 LEU CG CD2 sing N N 188 LEU CG HG sing N N 189 LEU CD1 HD11 sing N N 190 LEU CD1 HD12 sing N N 191 LEU CD1 HD13 sing N N 192 LEU CD2 HD21 sing N N 193 LEU CD2 HD22 sing N N 194 LEU CD2 HD23 sing N N 195 LEU OXT HXT sing N N 196 LYS N CA sing N N 197 LYS N H sing N N 198 LYS N H2 sing N N 199 LYS CA C sing N N 200 LYS CA CB sing N N 201 LYS CA HA sing N N 202 LYS C O doub N N 203 LYS C OXT sing N N 204 LYS CB CG sing N N 205 LYS CB HB2 sing N N 206 LYS CB HB3 sing N N 207 LYS CG CD sing N N 208 LYS CG HG2 sing N N 209 LYS CG HG3 sing N N 210 LYS CD CE sing N N 211 LYS CD HD2 sing N N 212 LYS CD HD3 sing N N 213 LYS CE NZ sing N N 214 LYS CE HE2 sing N N 215 LYS CE HE3 sing N N 216 LYS NZ HZ1 sing N N 217 LYS NZ HZ2 sing N N 218 LYS NZ HZ3 sing N N 219 LYS OXT HXT sing N N 220 MET N CA sing N N 221 MET N H sing N N 222 MET N H2 sing N N 223 MET CA C sing N N 224 MET CA CB sing N N 225 MET CA HA sing N N 226 MET C O doub N N 227 MET C OXT sing N N 228 MET CB CG sing N N 229 MET CB HB2 sing N N 230 MET CB HB3 sing N N 231 MET CG SD sing N N 232 MET CG HG2 sing N N 233 MET CG HG3 sing N N 234 MET SD CE sing N N 235 MET CE HE1 sing N N 236 MET CE HE2 sing N N 237 MET CE HE3 sing N N 238 MET OXT HXT sing N N 239 PHE N CA sing N N 240 PHE N H sing N N 241 PHE N H2 sing N N 242 PHE CA C sing N N 243 PHE CA CB sing N N 244 PHE CA HA sing N N 245 PHE C O doub N N 246 PHE C OXT sing N N 247 PHE CB CG sing N N 248 PHE CB HB2 sing N N 249 PHE CB HB3 sing N N 250 PHE CG CD1 doub Y N 251 PHE CG CD2 sing Y N 252 PHE CD1 CE1 sing Y N 253 PHE CD1 HD1 sing N N 254 PHE CD2 CE2 doub Y N 255 PHE CD2 HD2 sing N N 256 PHE CE1 CZ doub Y N 257 PHE CE1 HE1 sing N N 258 PHE CE2 CZ sing Y N 259 PHE CE2 HE2 sing N N 260 PHE CZ HZ sing N N 261 PHE OXT HXT sing N N 262 PRO N CA sing N N 263 PRO N CD sing N N 264 PRO N H sing N N 265 PRO CA C sing N N 266 PRO CA CB sing N N 267 PRO CA HA sing N N 268 PRO C O doub N N 269 PRO C OXT sing N N 270 PRO CB CG sing N N 271 PRO CB HB2 sing N N 272 PRO CB HB3 sing N N 273 PRO CG CD sing N N 274 PRO CG HG2 sing N N 275 PRO CG HG3 sing N N 276 PRO CD HD2 sing N N 277 PRO CD HD3 sing N N 278 PRO OXT HXT sing N N 279 SER N CA sing N N 280 SER N H sing N N 281 SER N H2 sing N N 282 SER CA C sing N N 283 SER CA CB sing N N 284 SER CA HA sing N N 285 SER C O doub N N 286 SER C OXT sing N N 287 SER CB OG sing N N 288 SER CB HB2 sing N N 289 SER CB HB3 sing N N 290 SER OG HG sing N N 291 SER OXT HXT sing N N 292 THR N CA sing N N 293 THR N H sing N N 294 THR N H2 sing N N 295 THR CA C sing N N 296 THR CA CB sing N N 297 THR CA HA sing N N 298 THR C O doub N N 299 THR C OXT sing N N 300 THR CB OG1 sing N N 301 THR CB CG2 sing N N 302 THR CB HB sing N N 303 THR OG1 HG1 sing N N 304 THR CG2 HG21 sing N N 305 THR CG2 HG22 sing N N 306 THR CG2 HG23 sing N N 307 THR OXT HXT sing N N 308 TRP N CA sing N N 309 TRP N H sing N N 310 TRP N H2 sing N N 311 TRP CA C sing N N 312 TRP CA CB sing N N 313 TRP CA HA sing N N 314 TRP C O doub N N 315 TRP C OXT sing N N 316 TRP CB CG sing N N 317 TRP CB HB2 sing N N 318 TRP CB HB3 sing N N 319 TRP CG CD1 doub Y N 320 TRP CG CD2 sing Y N 321 TRP CD1 NE1 sing Y N 322 TRP CD1 HD1 sing N N 323 TRP CD2 CE2 doub Y N 324 TRP CD2 CE3 sing Y N 325 TRP NE1 CE2 sing Y N 326 TRP NE1 HE1 sing N N 327 TRP CE2 CZ2 sing Y N 328 TRP CE3 CZ3 doub Y N 329 TRP CE3 HE3 sing N N 330 TRP CZ2 CH2 doub Y N 331 TRP CZ2 HZ2 sing N N 332 TRP CZ3 CH2 sing Y N 333 TRP CZ3 HZ3 sing N N 334 TRP CH2 HH2 sing N N 335 TRP OXT HXT sing N N 336 TYR N CA sing N N 337 TYR N H sing N N 338 TYR N H2 sing N N 339 TYR CA C sing N N 340 TYR CA CB sing N N 341 TYR CA HA sing N N 342 TYR C O doub N N 343 TYR C OXT sing N N 344 TYR CB CG sing N N 345 TYR CB HB2 sing N N 346 TYR CB HB3 sing N N 347 TYR CG CD1 doub Y N 348 TYR CG CD2 sing Y N 349 TYR CD1 CE1 sing Y N 350 TYR CD1 HD1 sing N N 351 TYR CD2 CE2 doub Y N 352 TYR CD2 HD2 sing N N 353 TYR CE1 CZ doub Y N 354 TYR CE1 HE1 sing N N 355 TYR CE2 CZ sing Y N 356 TYR CE2 HE2 sing N N 357 TYR CZ OH sing N N 358 TYR OH HH sing N N 359 TYR OXT HXT sing N N 360 VAL N CA sing N N 361 VAL N H sing N N 362 VAL N H2 sing N N 363 VAL CA C sing N N 364 VAL CA CB sing N N 365 VAL CA HA sing N N 366 VAL C O doub N N 367 VAL C OXT sing N N 368 VAL CB CG1 sing N N 369 VAL CB CG2 sing N N 370 VAL CB HB sing N N 371 VAL CG1 HG11 sing N N 372 VAL CG1 HG12 sing N N 373 VAL CG1 HG13 sing N N 374 VAL CG2 HG21 sing N N 375 VAL CG2 HG22 sing N N 376 VAL CG2 HG23 sing N N 377 VAL OXT HXT sing N N 378 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BMA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpb BMA 'COMMON NAME' GMML 1.0 b-D-mannopyranose BMA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Manp BMA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CALCIUM ION' CA 3 beta-D-mannopyranose BMA 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2GGU _pdbx_initial_refinement_model.details 'A complex of pig SPD and glycerol solved by molecular replacement in the same space group using human SPD (pdb code 2GGU B chain)' #