HEADER SIGNALING PROTEIN 08-FEB-12 4DNK TITLE CRYSTAL STRUCTURE OF A TYROSINE 3-MONOOXYGENASE/TRYPTOPHAN 5- TITLE 2 MONOOXYGENASE ACTIVATION PROTEIN, BETA POLYPEPTIDE (YWHAB) FROM HOMO TITLE 3 SAPIENS AT 2.20 A RESOLUTION. COMPND MOL_ID: 1; COMPND 2 MOLECULE: 14-3-3 PROTEIN BETA/ALPHA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROTEIN 1054, PROTEIN KINASE C INHIBITOR PROTEIN 1, KCIP-1, COMPND 5 14-3-3 PROTEIN BETA/ALPHA, N-TERMINALLY PROCESSED; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BC001359, YWHAB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PB1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS 14-3-3 DOMAIN, PHOSPHORYLATION, PROTEIN-PROTEIN BINDING, CELL KEYWDS 2 SIGNALING, CELL REGULATION, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI- KEYWDS 4 BIOLOGY, SIGNALING PROTEIN, PARTNERSHIP FOR T-CELL BIOLOGY, TCELL EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG),PARTNERSHIP FOR T-CELL AUTHOR 2 BIOLOGY (TCELL) REVDAT 5 01-FEB-23 4DNK 1 REMARK SEQADV LINK REVDAT 4 15-NOV-17 4DNK 1 REMARK REVDAT 3 21-OCT-15 4DNK 1 AUTHOR JRNL REVDAT 2 23-MAY-12 4DNK 1 TITLE REVDAT 1 22-FEB-12 4DNK 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG), JRNL AUTH 2 PARTNERSHIP FOR T-CELL BIOLOGY (TCELL) JRNL TITL CRYSTAL STRUCTURE OF A TYROSINE 3-MONOOXYGENASE/TRYPTOPHAN JRNL TITL 2 5-MONOOXYGENASE ACTIVATION PROTEIN, BETA POLYPEPTIDE (YWHAQ) JRNL TITL 3 FROM HOMO SAPIENS AT 2.20 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.23 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 31599 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1596 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2154 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.2760 REMARK 3 BIN FREE R VALUE SET COUNT : 113 REMARK 3 BIN FREE R VALUE : 0.2870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3749 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 257 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.94000 REMARK 3 B22 (A**2) : -1.26000 REMARK 3 B33 (A**2) : 0.13000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.23000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.238 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.188 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.150 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.757 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3900 ; 0.007 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2693 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5259 ; 1.173 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6605 ; 0.811 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 484 ; 4.432 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 201 ;35.732 ;25.622 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 759 ;15.058 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;18.982 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 578 ; 0.058 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4311 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 736 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 7 REMARK 3 ORIGIN FOR THE GROUP (A): 40.2820 119.1940 41.1870 REMARK 3 T TENSOR REMARK 3 T11: 0.5115 T22: 0.8492 REMARK 3 T33: 0.6967 T12: 0.3015 REMARK 3 T13: -0.2252 T23: 0.0749 REMARK 3 L TENSOR REMARK 3 L11: 15.4791 L22: 14.7213 REMARK 3 L33: 42.9422 L12: -15.0556 REMARK 3 L13: -17.4814 L23: 18.3354 REMARK 3 S TENSOR REMARK 3 S11: -0.3377 S12: -0.4729 S13: 1.7925 REMARK 3 S21: 0.2808 S22: 0.5172 S23: -1.6268 REMARK 3 S31: 0.7406 S32: 2.8108 S33: -0.1795 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 90 REMARK 3 ORIGIN FOR THE GROUP (A): 23.3020 132.5180 29.1700 REMARK 3 T TENSOR REMARK 3 T11: 0.0136 T22: 0.0693 REMARK 3 T33: 0.0523 T12: -0.0030 REMARK 3 T13: 0.0110 T23: 0.0138 REMARK 3 L TENSOR REMARK 3 L11: 0.8269 L22: 3.6723 REMARK 3 L33: 1.6594 L12: -0.2139 REMARK 3 L13: 0.5580 L23: -0.6782 REMARK 3 S TENSOR REMARK 3 S11: -0.0339 S12: -0.0622 S13: 0.0744 REMARK 3 S21: -0.0625 S22: 0.1006 S23: 0.1635 REMARK 3 S31: -0.0547 S32: -0.1307 S33: -0.0667 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 91 A 141 REMARK 3 ORIGIN FOR THE GROUP (A): 24.3750 119.6060 22.4050 REMARK 3 T TENSOR REMARK 3 T11: 0.0332 T22: 0.0749 REMARK 3 T33: 0.0108 T12: -0.0151 REMARK 3 T13: 0.0133 T23: 0.0131 REMARK 3 L TENSOR REMARK 3 L11: 2.5592 L22: 6.1095 REMARK 3 L33: 2.0934 L12: -1.3403 REMARK 3 L13: 0.9858 L23: -0.3829 REMARK 3 S TENSOR REMARK 3 S11: -0.0158 S12: 0.1191 S13: 0.0365 REMARK 3 S21: -0.3963 S22: 0.0283 S23: -0.2034 REMARK 3 S31: -0.0815 S32: 0.1226 S33: -0.0125 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 142 A 210 REMARK 3 ORIGIN FOR THE GROUP (A): 9.9300 111.5670 24.3990 REMARK 3 T TENSOR REMARK 3 T11: 0.0256 T22: 0.0516 REMARK 3 T33: 0.0248 T12: -0.0080 REMARK 3 T13: -0.0139 T23: 0.0146 REMARK 3 L TENSOR REMARK 3 L11: 1.4533 L22: 2.1533 REMARK 3 L33: 2.3863 L12: 1.0185 REMARK 3 L13: -0.8909 L23: -1.1659 REMARK 3 S TENSOR REMARK 3 S11: -0.0305 S12: 0.0507 S13: -0.0929 REMARK 3 S21: -0.1870 S22: 0.0224 S23: -0.0127 REMARK 3 S31: 0.1136 S32: 0.0345 S33: 0.0080 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 211 A 233 REMARK 3 ORIGIN FOR THE GROUP (A): 3.1030 116.3990 32.8170 REMARK 3 T TENSOR REMARK 3 T11: 0.0609 T22: 0.1102 REMARK 3 T33: 0.0938 T12: 0.0072 REMARK 3 T13: 0.0231 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: 1.8515 L22: 11.3215 REMARK 3 L33: 18.2492 L12: -3.5312 REMARK 3 L13: 2.6277 L23: -8.0109 REMARK 3 S TENSOR REMARK 3 S11: 0.0096 S12: -0.1862 S13: 0.1836 REMARK 3 S21: 0.1699 S22: 0.2051 S23: 0.1900 REMARK 3 S31: -0.8839 S32: -0.6985 S33: -0.2148 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 72 REMARK 3 ORIGIN FOR THE GROUP (A): 25.4430 148.3270 36.7160 REMARK 3 T TENSOR REMARK 3 T11: 0.0062 T22: 0.0584 REMARK 3 T33: 0.0486 T12: 0.0110 REMARK 3 T13: 0.0148 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 1.1278 L22: 2.9028 REMARK 3 L33: 2.5104 L12: -0.3621 REMARK 3 L13: 0.9376 L23: -0.6651 REMARK 3 S TENSOR REMARK 3 S11: -0.0401 S12: -0.1131 S13: -0.0385 REMARK 3 S21: 0.0555 S22: 0.1133 S23: 0.0850 REMARK 3 S31: -0.0469 S32: -0.1045 S33: -0.0732 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 73 B 90 REMARK 3 ORIGIN FOR THE GROUP (A): 37.9750 129.5010 50.6930 REMARK 3 T TENSOR REMARK 3 T11: 0.5773 T22: 0.3221 REMARK 3 T33: 0.8560 T12: -0.0973 REMARK 3 T13: -0.3750 T23: 0.2219 REMARK 3 L TENSOR REMARK 3 L11: 2.9011 L22: 11.1477 REMARK 3 L33: 12.9512 L12: -4.0906 REMARK 3 L13: -0.4673 L23: -5.1851 REMARK 3 S TENSOR REMARK 3 S11: -0.1621 S12: -0.1410 S13: -0.6169 REMARK 3 S21: 0.6025 S22: -0.3369 S23: -0.6743 REMARK 3 S31: 1.3457 S32: 0.1895 S33: 0.4990 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 91 B 141 REMARK 3 ORIGIN FOR THE GROUP (A): 32.2790 156.3520 45.3900 REMARK 3 T TENSOR REMARK 3 T11: 0.0114 T22: 0.1456 REMARK 3 T33: 0.0659 T12: 0.0031 REMARK 3 T13: 0.0059 T23: -0.0296 REMARK 3 L TENSOR REMARK 3 L11: 1.0910 L22: 5.2639 REMARK 3 L33: 4.6118 L12: -0.0974 REMARK 3 L13: -0.0287 L23: 0.9149 REMARK 3 S TENSOR REMARK 3 S11: 0.0002 S12: -0.0548 S13: -0.0218 REMARK 3 S21: 0.1590 S22: 0.0801 S23: -0.3312 REMARK 3 S31: 0.0229 S32: 0.1065 S33: -0.0803 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 142 B 223 REMARK 3 ORIGIN FOR THE GROUP (A): 19.8590 164.7830 57.9550 REMARK 3 T TENSOR REMARK 3 T11: 0.0180 T22: 0.1021 REMARK 3 T33: 0.0169 T12: -0.0059 REMARK 3 T13: 0.0031 T23: -0.0335 REMARK 3 L TENSOR REMARK 3 L11: 3.6026 L22: 1.4146 REMARK 3 L33: 2.1222 L12: -0.7654 REMARK 3 L13: -0.4696 L23: 0.3512 REMARK 3 S TENSOR REMARK 3 S11: 0.1842 S12: 0.1727 S13: -0.1027 REMARK 3 S21: -0.1010 S22: -0.1411 S23: 0.0040 REMARK 3 S31: -0.0187 S32: 0.0197 S33: -0.0432 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 224 B 234 REMARK 3 ORIGIN FOR THE GROUP (A): 16.3910 157.0510 70.1580 REMARK 3 T TENSOR REMARK 3 T11: 0.3499 T22: 0.5733 REMARK 3 T33: 0.3673 T12: 0.2245 REMARK 3 T13: 0.1751 T23: 0.1303 REMARK 3 L TENSOR REMARK 3 L11: 29.2589 L22: 6.4641 REMARK 3 L33: 19.2499 L12: 4.1217 REMARK 3 L13: 4.2673 L23: -9.8010 REMARK 3 S TENSOR REMARK 3 S11: 0.4626 S12: -1.9259 S13: -0.4114 REMARK 3 S21: 0.5785 S22: 0.1075 S23: 0.3183 REMARK 3 S31: -0.6229 S32: -0.6253 S33: -0.5701 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORD CONTAINS SUM OF TLS AND REMARK 3 RESIDUAL B FACTORS. 3. ANISOU RECORD CONTAINS SUM OF TLS AND REMARK 3 RESIDUAL U FACTORS. 4. WATERS WERE EXCLUDED FROM AUTOMATIC TLS REMARK 3 ASSIGNMENT. 5. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 6. 1,2-ETHANEDIOL (EDO) MOLECULES FROM THE REMARK 3 CRYOPROTECTION SOLUTION ARE MODELED. 7. PHOSPHATE (PO4) REMARK 3 MOLECULES FROM THE PURIFICATION SOLUTION ARE MODELED. 8. TLS REMARK 3 GROUPS WERE ASSIGNED WITH THE AID OF THE TLSMD SERVER. REMARK 4 REMARK 4 4DNK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000070551. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91162,0.97946,0.97932 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31601 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 29.227 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.15300 REMARK 200 FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.75300 REMARK 200 R SYM FOR SHELL (I) : 0.75300 REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20.00% POLYETHYLENE GLYCOL 3350, 0.20M REMARK 280 MAGNESIUM ACETATE, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 61.42400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A REMARK 300 DIMER AS THE SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 ASN A 234 REMARK 465 GLN A 235 REMARK 465 GLY A 236 REMARK 465 ASP A 237 REMARK 465 GLU A 238 REMARK 465 GLY A 239 REMARK 465 ASP A 240 REMARK 465 ALA A 241 REMARK 465 GLY A 242 REMARK 465 GLU A 243 REMARK 465 GLY A 244 REMARK 465 GLU A 245 REMARK 465 ASN A 246 REMARK 465 GLY B 0 REMARK 465 GLN B 235 REMARK 465 GLY B 236 REMARK 465 ASP B 237 REMARK 465 GLU B 238 REMARK 465 GLY B 239 REMARK 465 ASP B 240 REMARK 465 ALA B 241 REMARK 465 GLY B 242 REMARK 465 GLU B 243 REMARK 465 GLY B 244 REMARK 465 GLU B 245 REMARK 465 ASN B 246 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 75 CD OE1 OE2 REMARK 470 MSE B 1 CG SE CE REMARK 470 GLU B 115 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 138 -52.19 87.32 REMARK 500 ARG B 20 77.18 -117.66 REMARK 500 TYR B 106 -59.85 -126.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-422475 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 1-246 OF THE TARGET REMARK 999 SEQUENCE. DBREF 4DNK A 1 246 UNP P31946 1433B_HUMAN 1 246 DBREF 4DNK B 1 246 UNP P31946 1433B_HUMAN 1 246 SEQADV 4DNK GLY A 0 UNP P31946 EXPRESSION TAG SEQADV 4DNK GLY B 0 UNP P31946 EXPRESSION TAG SEQRES 1 A 247 GLY MSE THR MSE ASP LYS SER GLU LEU VAL GLN LYS ALA SEQRES 2 A 247 LYS LEU ALA GLU GLN ALA GLU ARG TYR ASP ASP MSE ALA SEQRES 3 A 247 ALA ALA MSE LYS ALA VAL THR GLU GLN GLY HIS GLU LEU SEQRES 4 A 247 SER ASN GLU GLU ARG ASN LEU LEU SER VAL ALA TYR LYS SEQRES 5 A 247 ASN VAL VAL GLY ALA ARG ARG SER SER TRP ARG VAL ILE SEQRES 6 A 247 SER SER ILE GLU GLN LYS THR GLU ARG ASN GLU LYS LYS SEQRES 7 A 247 GLN GLN MSE GLY LYS GLU TYR ARG GLU LYS ILE GLU ALA SEQRES 8 A 247 GLU LEU GLN ASP ILE CYS ASN ASP VAL LEU GLU LEU LEU SEQRES 9 A 247 ASP LYS TYR LEU ILE PRO ASN ALA THR GLN PRO GLU SER SEQRES 10 A 247 LYS VAL PHE TYR LEU LYS MSE LYS GLY ASP TYR PHE ARG SEQRES 11 A 247 TYR LEU SER GLU VAL ALA SER GLY ASP ASN LYS GLN THR SEQRES 12 A 247 THR VAL SER ASN SER GLN GLN ALA TYR GLN GLU ALA PHE SEQRES 13 A 247 GLU ILE SER LYS LYS GLU MSE GLN PRO THR HIS PRO ILE SEQRES 14 A 247 ARG LEU GLY LEU ALA LEU ASN PHE SER VAL PHE TYR TYR SEQRES 15 A 247 GLU ILE LEU ASN SER PRO GLU LYS ALA CYS SER LEU ALA SEQRES 16 A 247 LYS THR ALA PHE ASP GLU ALA ILE ALA GLU LEU ASP THR SEQRES 17 A 247 LEU ASN GLU GLU SER TYR LYS ASP SER THR LEU ILE MSE SEQRES 18 A 247 GLN LEU LEU ARG ASP ASN LEU THR LEU TRP THR SER GLU SEQRES 19 A 247 ASN GLN GLY ASP GLU GLY ASP ALA GLY GLU GLY GLU ASN SEQRES 1 B 247 GLY MSE THR MSE ASP LYS SER GLU LEU VAL GLN LYS ALA SEQRES 2 B 247 LYS LEU ALA GLU GLN ALA GLU ARG TYR ASP ASP MSE ALA SEQRES 3 B 247 ALA ALA MSE LYS ALA VAL THR GLU GLN GLY HIS GLU LEU SEQRES 4 B 247 SER ASN GLU GLU ARG ASN LEU LEU SER VAL ALA TYR LYS SEQRES 5 B 247 ASN VAL VAL GLY ALA ARG ARG SER SER TRP ARG VAL ILE SEQRES 6 B 247 SER SER ILE GLU GLN LYS THR GLU ARG ASN GLU LYS LYS SEQRES 7 B 247 GLN GLN MSE GLY LYS GLU TYR ARG GLU LYS ILE GLU ALA SEQRES 8 B 247 GLU LEU GLN ASP ILE CYS ASN ASP VAL LEU GLU LEU LEU SEQRES 9 B 247 ASP LYS TYR LEU ILE PRO ASN ALA THR GLN PRO GLU SER SEQRES 10 B 247 LYS VAL PHE TYR LEU LYS MSE LYS GLY ASP TYR PHE ARG SEQRES 11 B 247 TYR LEU SER GLU VAL ALA SER GLY ASP ASN LYS GLN THR SEQRES 12 B 247 THR VAL SER ASN SER GLN GLN ALA TYR GLN GLU ALA PHE SEQRES 13 B 247 GLU ILE SER LYS LYS GLU MSE GLN PRO THR HIS PRO ILE SEQRES 14 B 247 ARG LEU GLY LEU ALA LEU ASN PHE SER VAL PHE TYR TYR SEQRES 15 B 247 GLU ILE LEU ASN SER PRO GLU LYS ALA CYS SER LEU ALA SEQRES 16 B 247 LYS THR ALA PHE ASP GLU ALA ILE ALA GLU LEU ASP THR SEQRES 17 B 247 LEU ASN GLU GLU SER TYR LYS ASP SER THR LEU ILE MSE SEQRES 18 B 247 GLN LEU LEU ARG ASP ASN LEU THR LEU TRP THR SER GLU SEQRES 19 B 247 ASN GLN GLY ASP GLU GLY ASP ALA GLY GLU GLY GLU ASN MODRES 4DNK MSE A 3 MET SELENOMETHIONINE MODRES 4DNK MSE A 24 MET SELENOMETHIONINE MODRES 4DNK MSE A 28 MET SELENOMETHIONINE MODRES 4DNK MSE A 80 MET SELENOMETHIONINE MODRES 4DNK MSE A 123 MET SELENOMETHIONINE MODRES 4DNK MSE A 162 MET SELENOMETHIONINE MODRES 4DNK MSE A 220 MET SELENOMETHIONINE MODRES 4DNK MSE B 1 MET SELENOMETHIONINE MODRES 4DNK MSE B 3 MET SELENOMETHIONINE MODRES 4DNK MSE B 24 MET SELENOMETHIONINE MODRES 4DNK MSE B 28 MET SELENOMETHIONINE MODRES 4DNK MSE B 80 MET SELENOMETHIONINE MODRES 4DNK MSE B 123 MET SELENOMETHIONINE MODRES 4DNK MSE B 162 MET SELENOMETHIONINE MODRES 4DNK MSE B 220 MET SELENOMETHIONINE HET MSE A 3 8 HET MSE A 24 8 HET MSE A 28 8 HET MSE A 80 8 HET MSE A 123 8 HET MSE A 162 8 HET MSE A 220 8 HET MSE B 1 5 HET MSE B 3 8 HET MSE B 24 8 HET MSE B 28 8 HET MSE B 80 8 HET MSE B 123 8 HET MSE B 162 8 HET MSE B 220 8 HET PO4 A 301 5 HET EDO A 302 4 HET EDO A 303 4 HET EDO A 304 4 HET EDO A 305 4 HET PO4 B 301 5 HET PO4 B 302 5 HETNAM MSE SELENOMETHIONINE HETNAM PO4 PHOSPHATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 15(C5 H11 N O2 SE) FORMUL 3 PO4 3(O4 P 3-) FORMUL 4 EDO 4(C2 H6 O2) FORMUL 10 HOH *257(H2 O) HELIX 1 1 ASP A 4 ALA A 18 1 15 HELIX 2 2 ARG A 20 GLN A 34 1 15 HELIX 3 3 SER A 39 LYS A 70 1 32 HELIX 4 4 ASN A 74 TYR A 106 1 33 HELIX 5 5 TYR A 106 ALA A 111 1 6 HELIX 6 6 GLN A 113 VAL A 134 1 22 HELIX 7 7 ASP A 138 MSE A 162 1 25 HELIX 8 8 HIS A 166 ILE A 183 1 18 HELIX 9 9 SER A 186 ALA A 203 1 18 HELIX 10 10 GLU A 204 LEU A 208 5 5 HELIX 11 11 SER A 212 GLU A 233 1 22 HELIX 12 12 ASP B 4 ALA B 18 1 15 HELIX 13 13 ARG B 20 GLU B 33 1 14 HELIX 14 14 SER B 39 THR B 71 1 33 HELIX 15 15 GLU B 75 TYR B 106 1 32 HELIX 16 16 TYR B 106 ALA B 111 1 6 HELIX 17 17 GLN B 113 VAL B 134 1 22 HELIX 18 18 SER B 136 MSE B 162 1 27 HELIX 19 19 HIS B 166 ILE B 183 1 18 HELIX 20 20 SER B 186 ALA B 203 1 18 HELIX 21 21 GLU B 204 LEU B 208 5 5 HELIX 22 22 TYR B 213 SER B 232 1 20 LINK C THR A 2 N MSE A 3 1555 1555 1.33 LINK C MSE A 3 N ASP A 4 1555 1555 1.33 LINK C ASP A 23 N MSE A 24 1555 1555 1.32 LINK C MSE A 24 N ALA A 25 1555 1555 1.33 LINK C ALA A 27 N MSE A 28 1555 1555 1.33 LINK C MSE A 28 N LYS A 29 1555 1555 1.33 LINK C GLN A 79 N MSE A 80 1555 1555 1.33 LINK C MSE A 80 N GLY A 81 1555 1555 1.33 LINK C LYS A 122 N MSE A 123 1555 1555 1.33 LINK C MSE A 123 N LYS A 124 1555 1555 1.33 LINK C GLU A 161 N MSE A 162 1555 1555 1.33 LINK C MSE A 162 N GLN A 163 1555 1555 1.33 LINK C ILE A 219 N MSE A 220 1555 1555 1.33 LINK C MSE A 220 N GLN A 221 1555 1555 1.33 LINK C MSE B 1 N THR B 2 1555 1555 1.33 LINK C THR B 2 N MSE B 3 1555 1555 1.32 LINK C MSE B 3 N ASP B 4 1555 1555 1.33 LINK C ASP B 23 N MSE B 24 1555 1555 1.32 LINK C MSE B 24 N ALA B 25 1555 1555 1.33 LINK C ALA B 27 N MSE B 28 1555 1555 1.34 LINK C MSE B 28 N LYS B 29 1555 1555 1.34 LINK C GLN B 79 N MSE B 80 1555 1555 1.33 LINK C MSE B 80 N GLY B 81 1555 1555 1.33 LINK C LYS B 122 N MSE B 123 1555 1555 1.34 LINK C MSE B 123 N LYS B 124 1555 1555 1.33 LINK C GLU B 161 N MSE B 162 1555 1555 1.33 LINK C MSE B 162 N GLN B 163 1555 1555 1.33 LINK C ILE B 219 N MSE B 220 1555 1555 1.33 LINK C MSE B 220 N GLN B 221 1555 1555 1.33 SITE 1 AC1 5 ARG A 85 GLU A 89 VAL A 134 ALA A 135 SITE 2 AC1 5 SER A 136 SITE 1 AC2 4 ARG A 20 TYR A 21 ASP A 22 ASP A 23 SITE 1 AC3 3 LYS A 159 ARG A 169 GLU A 200 SITE 1 AC4 2 ASN A 185 LYS B 70 SITE 1 AC5 5 LYS A 51 GLY A 55 ARG A 58 TYR A 130 SITE 2 AC5 5 HOH A 493 SITE 1 AC6 3 THR B 2 GLU B 7 ASP B 225 SITE 1 AC7 5 ARG B 85 GLU B 89 VAL B 134 ALA B 135 SITE 2 AC7 5 SER B 136 CRYST1 52.144 122.848 55.256 90.00 113.98 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019178 0.000000 0.008529 0.00000 SCALE2 0.000000 0.008140 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019806 0.00000