HEADER METAL BINDING PROTEIN 09-FEB-12 4DO0 TITLE CRYSTAL STRUCTURE OF HUMAN PHF8 IN COMPLEX WITH DAMINOZIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE LYSINE DEMETHYLASE PHF8; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PHD FINGER PROTEIN 8; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PHF8, KIAA1111, ZNF422; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS JMJC DOMAIN, METAL BINDING PROTEIN, HISTONE DEMETHYLASE, EPIGENETICS, KEYWDS 2 DAMINOZIDE, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC EXPDTA X-RAY DIFFRACTION AUTHOR T.KROJER,M.DANIEL,S.S.NG,L.J.WALPORT,R.CHOWDHURY,C.H.ARROWSMITH, AUTHOR 2 A.EDWARDS,C.BOUNTRA,A.KAWAMURA,S.MULLER-KNAPP,M.A.MCDONOUGH,F.VON AUTHOR 3 DELFT,C.J.SCHOFIELD,U.OPPERMANN,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 3 13-SEP-23 4DO0 1 REMARK LINK REVDAT 2 26-FEB-20 4DO0 1 REMARK SEQADV REVDAT 1 14-MAR-12 4DO0 0 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 107.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 18069 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.400 REMARK 3 FREE R VALUE TEST SET COUNT : 1034 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1282 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3210 REMARK 3 BIN FREE R VALUE SET COUNT : 84 REMARK 3 BIN FREE R VALUE : 0.4450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2875 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 37 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 65.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.377 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.280 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.208 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.551 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3008 ; 0.013 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1989 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4088 ; 1.573 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4842 ; 0.963 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 366 ; 6.305 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 135 ;36.151 ;23.926 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 484 ;15.694 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;16.614 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 462 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3317 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 633 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4DO0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000070567. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9173 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19128 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 107.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.50 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.30 REMARK 200 R MERGE FOR SHELL (I) : 0.56600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2WWU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M ACETATE, 2M AMMONIUM SULFATE, PH REMARK 280 4.5, VAPOR DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y,-Z REMARK 290 16555 X,-Y,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z,-X,-Y+1/2 REMARK 290 19555 -Z,-X+1/2,Y REMARK 290 20555 -Z+1/2,X,-Y REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z,-X REMARK 290 23555 Y,-Z,-X+1/2 REMARK 290 24555 -Y,-Z+1/2,X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 75.86700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.86700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 75.86700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.86700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 75.86700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 75.86700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 75.86700 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 75.86700 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 75.86700 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 75.86700 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 75.86700 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 75.86700 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 75.86700 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 75.86700 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 75.86700 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 75.86700 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 75.86700 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 75.86700 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 75.86700 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 75.86700 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 75.86700 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 75.86700 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 75.86700 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 75.86700 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 75.86700 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 75.86700 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 75.86700 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 75.86700 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 75.86700 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 75.86700 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 75.86700 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 75.86700 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 75.86700 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 75.86700 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 75.86700 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 75.86700 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -166.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 75.86700 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 74 REMARK 465 PHE A 75 REMARK 465 GLN A 76 REMARK 465 SER A 77 REMARK 465 MET A 78 REMARK 465 PRO A 79 REMARK 465 ILE A 443 REMARK 465 PHE A 444 REMARK 465 GLN A 445 REMARK 465 GLN A 446 REMARK 465 ASN A 447 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 81 CD CE NZ REMARK 470 ARG A 89 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 94 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 114 CG CD OE1 OE2 REMARK 470 LYS A 129 CE NZ REMARK 470 LYS A 155 CD CE NZ REMARK 470 ARG A 164 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 171 CE NZ REMARK 470 LYS A 177 CE NZ REMARK 470 LYS A 183 CG CD CE NZ REMARK 470 GLU A 185 CG CD OE1 OE2 REMARK 470 LYS A 208 CE NZ REMARK 470 LYS A 212 CE NZ REMARK 470 GLU A 222 CG CD OE1 OE2 REMARK 470 GLU A 223 CG CD OE1 OE2 REMARK 470 GLU A 384 CG CD OE1 OE2 REMARK 470 ARG A 386 CD NE CZ NH1 NH2 REMARK 470 ARG A 387 NE CZ NH1 NH2 REMARK 470 LYS A 398 CE NZ REMARK 470 ARG A 409 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 410 CG CD CE NZ REMARK 470 LYS A 431 CE NZ REMARK 470 ASP A 442 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 82 106.86 -58.69 REMARK 500 SER A 84 154.32 -45.89 REMARK 500 THR A 95 -81.79 -49.41 REMARK 500 PHE A 96 153.78 72.57 REMARK 500 SER A 120 173.41 66.89 REMARK 500 SER A 120 174.55 64.94 REMARK 500 PRO A 138 -178.47 -68.60 REMARK 500 PRO A 140 2.92 -57.83 REMARK 500 PHE A 142 152.47 -48.41 REMARK 500 SER A 153 -39.28 -37.24 REMARK 500 THR A 163 58.87 -102.43 REMARK 500 ARG A 164 -14.91 169.35 REMARK 500 GLN A 165 43.18 36.07 REMARK 500 ARG A 184 46.51 -76.46 REMARK 500 ARG A 240 134.06 -32.32 REMARK 500 THR A 315 120.54 -37.34 REMARK 500 ASN A 339 59.14 -148.45 REMARK 500 PHE A 361 79.79 -119.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 247 NE2 REMARK 620 2 ASP A 249 OD1 96.4 REMARK 620 3 HIS A 319 NE2 88.1 98.9 REMARK 620 4 DZA A 501 N04 94.1 99.0 161.6 REMARK 620 5 DZA A 501 O01 76.8 171.1 86.7 76.1 REMARK 620 6 HOH A 612 O 164.4 98.2 84.2 89.0 89.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DZA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 512 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 513 DBREF 4DO0 A 79 447 UNP Q9UPP1 PHF8_HUMAN 115 483 SEQADV 4DO0 TYR A 74 UNP Q9UPP1 EXPRESSION TAG SEQADV 4DO0 PHE A 75 UNP Q9UPP1 EXPRESSION TAG SEQADV 4DO0 GLN A 76 UNP Q9UPP1 EXPRESSION TAG SEQADV 4DO0 SER A 77 UNP Q9UPP1 EXPRESSION TAG SEQADV 4DO0 MET A 78 UNP Q9UPP1 EXPRESSION TAG SEQRES 1 A 374 TYR PHE GLN SER MET PRO VAL LYS THR GLY SER PRO THR SEQRES 2 A 374 PHE VAL ARG GLU LEU ARG SER ARG THR PHE ASP SER SER SEQRES 3 A 374 ASP GLU VAL ILE LEU LYS PRO THR GLY ASN GLN LEU THR SEQRES 4 A 374 VAL GLU PHE LEU GLU GLU ASN SER PHE SER VAL PRO ILE SEQRES 5 A 374 LEU VAL LEU LYS LYS ASP GLY LEU GLY MET THR LEU PRO SEQRES 6 A 374 SER PRO SER PHE THR VAL ARG ASP VAL GLU HIS TYR VAL SEQRES 7 A 374 GLY SER ASP LYS GLU ILE ASP VAL ILE ASP VAL THR ARG SEQRES 8 A 374 GLN ALA ASP CYS LYS MET LYS LEU GLY ASP PHE VAL LYS SEQRES 9 A 374 TYR TYR TYR SER GLY LYS ARG GLU LYS VAL LEU ASN VAL SEQRES 10 A 374 ILE SER LEU GLU PHE SER ASP THR ARG LEU SER ASN LEU SEQRES 11 A 374 VAL GLU THR PRO LYS ILE VAL ARG LYS LEU SER TRP VAL SEQRES 12 A 374 GLU ASN LEU TRP PRO GLU GLU CYS VAL PHE GLU ARG PRO SEQRES 13 A 374 ASN VAL GLN LYS TYR CYS LEU MET SER VAL ARG ASP SER SEQRES 14 A 374 TYR THR ASP PHE HIS ILE ASP PHE GLY GLY THR SER VAL SEQRES 15 A 374 TRP TYR HIS VAL LEU LYS GLY GLU LYS ILE PHE TYR LEU SEQRES 16 A 374 ILE ARG PRO THR ASN ALA ASN LEU THR LEU PHE GLU CYS SEQRES 17 A 374 TRP SER SER SER SER ASN GLN ASN GLU MET PHE PHE GLY SEQRES 18 A 374 ASP GLN VAL ASP LYS CYS TYR LYS CYS SER VAL LYS GLN SEQRES 19 A 374 GLY GLN THR LEU PHE ILE PRO THR GLY TRP ILE HIS ALA SEQRES 20 A 374 VAL LEU THR PRO VAL ASP CYS LEU ALA PHE GLY GLY ASN SEQRES 21 A 374 PHE LEU HIS SER LEU ASN ILE GLU MET GLN LEU LYS ALA SEQRES 22 A 374 TYR GLU ILE GLU LYS ARG LEU SER THR ALA ASP LEU PHE SEQRES 23 A 374 ARG PHE PRO ASN PHE GLU THR ILE CYS TRP TYR VAL GLY SEQRES 24 A 374 LYS HIS ILE LEU ASP ILE PHE ARG GLY LEU ARG GLU ASN SEQRES 25 A 374 ARG ARG HIS PRO ALA SER TYR LEU VAL HIS GLY GLY LYS SEQRES 26 A 374 ALA LEU ASN LEU ALA PHE ARG ALA TRP THR ARG LYS GLU SEQRES 27 A 374 ALA LEU PRO ASP HIS GLU ASP GLU ILE PRO GLU THR VAL SEQRES 28 A 374 ARG THR VAL GLN LEU ILE LYS ASP LEU ALA ARG GLU ILE SEQRES 29 A 374 ARG LEU VAL GLU ASP ILE PHE GLN GLN ASN HET DZA A 501 11 HET ZN A 502 1 HET SO4 A 503 5 HET SO4 A 504 5 HET SO4 A 505 5 HET SO4 A 506 5 HET SO4 A 507 5 HET SO4 A 508 5 HET EDO A 509 4 HET ACT A 510 4 HET EDO A 511 4 HET EDO A 512 4 HET ACT A 513 4 HETNAM DZA DAMINOZIDE HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM ACT ACETATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 DZA C6 H12 N2 O3 FORMUL 3 ZN ZN 2+ FORMUL 4 SO4 6(O4 S 2-) FORMUL 10 EDO 3(C2 H6 O2) FORMUL 11 ACT 2(C2 H3 O2 1-) FORMUL 15 HOH *37(H2 O) HELIX 1 1 SER A 84 ARG A 94 1 11 HELIX 2 2 THR A 107 LEU A 111 5 5 HELIX 3 3 THR A 112 SER A 120 1 9 HELIX 4 4 THR A 143 GLY A 152 1 10 HELIX 5 5 LEU A 172 GLY A 182 1 11 HELIX 6 6 THR A 198 VAL A 204 5 7 HELIX 7 7 PRO A 207 SER A 214 1 8 HELIX 8 8 SER A 214 TRP A 220 1 7 HELIX 9 9 ASP A 249 THR A 253 5 5 HELIX 10 10 THR A 272 SER A 285 1 14 HELIX 11 11 ASN A 287 MET A 291 5 5 HELIX 12 12 PHE A 292 GLN A 296 5 5 HELIX 13 13 ASN A 339 SER A 354 1 16 HELIX 14 14 ASN A 363 ASN A 385 1 23 HELIX 15 15 ALA A 390 THR A 408 1 19 HELIX 16 16 ALA A 412 GLU A 417 1 6 HELIX 17 17 ASP A 418 ILE A 420 5 3 HELIX 18 18 ARG A 425 VAL A 440 1 16 SHEET 1 A 5 ASP A 97 SER A 98 0 SHEET 2 A 5 TYR A 301 LYS A 306 1 O LYS A 302 N ASP A 97 SHEET 3 A 5 GLU A 263 ILE A 269 -1 N PHE A 266 O CYS A 303 SHEET 4 A 5 ILE A 318 THR A 323 -1 O LEU A 322 N ILE A 265 SHEET 5 A 5 SER A 242 HIS A 247 -1 N THR A 244 O VAL A 321 SHEET 1 B 8 ILE A 125 VAL A 127 0 SHEET 2 B 8 THR A 310 ILE A 313 -1 O THR A 310 N VAL A 127 SHEET 3 B 8 SER A 254 LYS A 261 -1 N VAL A 255 O ILE A 313 SHEET 4 B 8 CYS A 327 PHE A 334 -1 O PHE A 334 N SER A 254 SHEET 5 B 8 TYR A 234 SER A 238 -1 N SER A 238 O CYS A 327 SHEET 6 B 8 LEU A 188 GLU A 194 -1 N LEU A 193 O CYS A 235 SHEET 7 B 8 GLU A 156 ASP A 161 -1 N ILE A 160 O ASN A 189 SHEET 8 B 8 ALA A 166 LYS A 171 -1 O CYS A 168 N VAL A 159 LINK NE2 HIS A 247 ZN ZN A 502 1555 1555 2.18 LINK OD1 ASP A 249 ZN ZN A 502 1555 1555 1.97 LINK NE2 HIS A 319 ZN ZN A 502 1555 1555 2.27 LINK N04 DZA A 501 ZN ZN A 502 1555 1555 2.10 LINK O01 DZA A 501 ZN ZN A 502 1555 1555 2.23 LINK ZN ZN A 502 O HOH A 612 1555 1555 1.93 SITE 1 AC1 11 ILE A 191 THR A 244 HIS A 247 ASP A 249 SITE 2 AC1 11 TYR A 257 LYS A 264 HIS A 319 VAL A 321 SITE 3 AC1 11 ZN A 502 HOH A 611 HOH A 612 SITE 1 AC2 5 HIS A 247 ASP A 249 HIS A 319 DZA A 501 SITE 2 AC2 5 HOH A 612 SITE 1 AC3 6 THR A 143 VAL A 144 ARG A 145 TYR A 179 SITE 2 AC3 6 TYR A 180 LYS A 261 SITE 1 AC4 2 HIS A 395 LYS A 398 SITE 1 AC5 5 ASP A 131 GLY A 132 LEU A 133 GLY A 134 SITE 2 AC5 5 MET A 135 SITE 1 AC6 2 ARG A 145 HIS A 149 SITE 1 AC7 2 LYS A 208 ARG A 211 SITE 1 AC8 5 THR A 272 ASN A 273 ALA A 390 SER A 391 SITE 2 AC8 5 TYR A 392 SITE 1 AC9 5 ASP A 100 GLU A 101 LYS A 105 PRO A 106 SITE 2 AC9 5 PHE A 115 SITE 1 BC1 1 ARG A 360 SITE 1 BC2 3 SER A 141 HIS A 149 ARG A 199 SITE 1 BC3 2 LYS A 302 SER A 304 SITE 1 BC4 2 GLN A 110 LYS A 299 CRYST1 151.734 151.734 151.734 90.00 90.00 90.00 I 21 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006590 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006590 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006590 0.00000