data_4DOM # _entry.id 4DOM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.382 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4DOM pdb_00004dom 10.2210/pdb4dom/pdb RCSB RCSB070589 ? ? WWPDB D_1000070589 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4DOM _pdbx_database_status.recvd_initial_deposition_date 2012-02-09 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Jiang, J.S.' 1 'Snyder, G.A.' 2 'Xiao, T.' 3 # _citation.id primary _citation.title 'Molecular mechanisms for the subversion of MyD88 signaling by TcpC from virulent uropathogenic Escherichia coli.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 110 _citation.page_first 6985 _citation.page_last 6990 _citation.year 2013 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23569230 _citation.pdbx_database_id_DOI 10.1073/pnas.1215770110 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Snyder, G.A.' 1 ? primary 'Cirl, C.' 2 ? primary 'Jiang, J.' 3 ? primary 'Chen, K.' 4 ? primary 'Waldhuber, A.' 5 ? primary 'Smith, P.' 6 ? primary 'Rommler, F.' 7 ? primary 'Snyder, N.' 8 ? primary 'Fresquez, T.' 9 ? primary 'Durr, S.' 10 ? primary 'Tjandra, N.' 11 ? primary 'Miethke, T.' 12 ? primary 'Xiao, T.S.' 13 ? # _cell.entry_id 4DOM _cell.length_a 33.415 _cell.length_b 57.991 _cell.length_c 62.495 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4DOM _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Myeloid differentiation primary response protein MyD88' 16718.621 1 ? ? 'TIR domain, UNP residues 157-296' ? 2 water nat water 18.015 102 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;DMPERFDAFI(CSO)YCPSDIQFVQEMIRQLEQTNYRL(MLY)LCVSDRDVLPGTCVWSIASELIE(MLY)RCRRMVVVV SDDYLQSKE(CSO)DFQT(MLY)FALSLSPGAHQKRLIPI(MLY)Y(MLY)AMKKEFPSILRFITVCDYTNPCTKSWFWT RLAKALSLP ; _entity_poly.pdbx_seq_one_letter_code_can ;DMPERFDAFICYCPSDIQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECDF QTKFALSLSPGAHQKRLIPIKYKAMKKEFPSILRFITVCDYTNPCTKSWFWTRLAKALSLP ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 MET n 1 3 PRO n 1 4 GLU n 1 5 ARG n 1 6 PHE n 1 7 ASP n 1 8 ALA n 1 9 PHE n 1 10 ILE n 1 11 CSO n 1 12 TYR n 1 13 CYS n 1 14 PRO n 1 15 SER n 1 16 ASP n 1 17 ILE n 1 18 GLN n 1 19 PHE n 1 20 VAL n 1 21 GLN n 1 22 GLU n 1 23 MET n 1 24 ILE n 1 25 ARG n 1 26 GLN n 1 27 LEU n 1 28 GLU n 1 29 GLN n 1 30 THR n 1 31 ASN n 1 32 TYR n 1 33 ARG n 1 34 LEU n 1 35 MLY n 1 36 LEU n 1 37 CYS n 1 38 VAL n 1 39 SER n 1 40 ASP n 1 41 ARG n 1 42 ASP n 1 43 VAL n 1 44 LEU n 1 45 PRO n 1 46 GLY n 1 47 THR n 1 48 CYS n 1 49 VAL n 1 50 TRP n 1 51 SER n 1 52 ILE n 1 53 ALA n 1 54 SER n 1 55 GLU n 1 56 LEU n 1 57 ILE n 1 58 GLU n 1 59 MLY n 1 60 ARG n 1 61 CYS n 1 62 ARG n 1 63 ARG n 1 64 MET n 1 65 VAL n 1 66 VAL n 1 67 VAL n 1 68 VAL n 1 69 SER n 1 70 ASP n 1 71 ASP n 1 72 TYR n 1 73 LEU n 1 74 GLN n 1 75 SER n 1 76 LYS n 1 77 GLU n 1 78 CSO n 1 79 ASP n 1 80 PHE n 1 81 GLN n 1 82 THR n 1 83 MLY n 1 84 PHE n 1 85 ALA n 1 86 LEU n 1 87 SER n 1 88 LEU n 1 89 SER n 1 90 PRO n 1 91 GLY n 1 92 ALA n 1 93 HIS n 1 94 GLN n 1 95 LYS n 1 96 ARG n 1 97 LEU n 1 98 ILE n 1 99 PRO n 1 100 ILE n 1 101 MLY n 1 102 TYR n 1 103 MLY n 1 104 ALA n 1 105 MET n 1 106 LYS n 1 107 LYS n 1 108 GLU n 1 109 PHE n 1 110 PRO n 1 111 SER n 1 112 ILE n 1 113 LEU n 1 114 ARG n 1 115 PHE n 1 116 ILE n 1 117 THR n 1 118 VAL n 1 119 CYS n 1 120 ASP n 1 121 TYR n 1 122 THR n 1 123 ASN n 1 124 PRO n 1 125 CYS n 1 126 THR n 1 127 LYS n 1 128 SER n 1 129 TRP n 1 130 PHE n 1 131 TRP n 1 132 THR n 1 133 ARG n 1 134 LEU n 1 135 ALA n 1 136 LYS n 1 137 ALA n 1 138 LEU n 1 139 SER n 1 140 LEU n 1 141 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene MYD88 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET30a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code MYD88_HUMAN _struct_ref.pdbx_db_accession Q99836 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MPERFDAFICYCPSDIQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECDFQ TKFALSLSPGAHQKRLIPIKYKAMKKEFPSILRFITVCDYTNPCTKSWFWTRLAKALSLP ; _struct_ref.pdbx_align_begin 157 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4DOM _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 141 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q99836 _struct_ref_seq.db_align_beg 157 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 296 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 157 _struct_ref_seq.pdbx_auth_seq_align_end 296 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 4DOM _struct_ref_seq_dif.mon_id ASP _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q99836 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 156 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CSO 'L-peptide linking' n S-HYDROXYCYSTEINE ? 'C3 H7 N O3 S' 137.158 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MLY 'L-peptide linking' n N-DIMETHYL-LYSINE ? 'C8 H18 N2 O2' 174.241 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4DOM _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.81 _exptl_crystal.density_percent_sol 32.08 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pdbx_details '30% PEG 8000, 0.1M Immidazole pH 8.0, 0.2M NaCl, VAPOR DIFFUSION, HANGING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2007-12-14 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si Mirror' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0000 # _reflns.entry_id 4DOM _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 50.00 _reflns.d_resolution_high 1.798 _reflns.number_obs 11360 _reflns.number_all 11846 _reflns.percent_possible_obs 95.9 _reflns.pdbx_Rmerge_I_obs 0.111 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 11.9 _reflns.B_iso_Wilson_estimate 21.04 _reflns.pdbx_redundancy 7.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.80 _reflns_shell.d_res_low 1.86 _reflns_shell.percent_possible_all 81.0 _reflns_shell.Rmerge_I_obs 0.467 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.9 _reflns_shell.pdbx_redundancy 4.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 952 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4DOM _refine.ls_number_reflns_obs 10821 _refine.ls_number_reflns_all 11360 _refine.pdbx_ls_sigma_I 0.0 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 42.509 _refine.ls_d_res_high 1.798 _refine.ls_percent_reflns_obs 91.58 _refine.ls_R_factor_obs 0.1817 _refine.ls_R_factor_all 0.1817 _refine.ls_R_factor_R_work 0.1796 _refine.ls_R_factor_R_free 0.2157 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.18 _refine.ls_number_reflns_R_free 560 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 28.31 _refine.aniso_B[1][1] -6.6799 _refine.aniso_B[2][2] -1.2192 _refine.aniso_B[3][3] 7.8991 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.398 _refine.solvent_model_param_bsol 71.311 _refine.pdbx_solvent_vdw_probe_radii 0.80 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.49 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 2JS7' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model Isotropic _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.16 _refine.pdbx_overall_phase_error 22.12 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1169 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 102 _refine_hist.number_atoms_total 1271 _refine_hist.d_res_high 1.798 _refine_hist.d_res_low 42.509 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.006 ? ? 1198 ? 'X-RAY DIFFRACTION' f_angle_d 1.107 ? ? 1618 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 16.828 ? ? 459 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.092 ? ? 177 ? 'X-RAY DIFFRACTION' f_plane_restr 0.007 ? ? 201 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 1.798 1.9793 2140 0.2138 78.00 0.2562 . . 118 . . . . 'X-RAY DIFFRACTION' . 1.9793 2.2657 2618 0.1716 94.00 0.2335 . . 124 . . . . 'X-RAY DIFFRACTION' . 2.2657 2.8545 2728 0.1767 98.00 0.2313 . . 149 . . . . 'X-RAY DIFFRACTION' . 2.8545 42.5209 2775 0.1775 96.00 0.2017 . . 169 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 4DOM _struct.title 'Crystal Structure of the TIR-domain of Human Myeloid Differentiation Primary Response protein (MyD88)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4DOM _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' _struct_keywords.text ;MyD88_HUMAN, TIR-domain, Toll-Like Receptor, Adopter domain, Innate Immune signaling, TIRAP/MAL, SIGNALING PROTEIN, Lysine Methylation ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 CYS A 13 ? SER A 15 ? CYS A 168 SER A 170 5 ? 3 HELX_P HELX_P2 2 ASP A 16 ? GLN A 29 ? ASP A 171 GLN A 184 1 ? 14 HELX_P HELX_P3 3 ASP A 40 ? LEU A 44 ? ASP A 195 LEU A 199 5 ? 5 HELX_P HELX_P4 4 ALA A 53 ? GLU A 55 ? ALA A 208 GLU A 210 5 ? 3 HELX_P HELX_P5 5 LEU A 56 ? ARG A 60 ? LEU A 211 ARG A 215 1 ? 5 HELX_P HELX_P6 6 SER A 69 ? GLN A 74 ? SER A 224 GLN A 229 1 ? 6 HELX_P HELX_P7 7 SER A 75 ? LEU A 88 ? SER A 230 LEU A 243 1 ? 14 HELX_P HELX_P8 8 ALA A 92 ? ARG A 96 ? ALA A 247 ARG A 251 1 ? 5 HELX_P HELX_P9 9 PRO A 110 ? ARG A 114 ? PRO A 265 ARG A 269 5 ? 5 HELX_P HELX_P10 10 ASN A 123 ? LYS A 127 ? ASN A 278 LYS A 282 5 ? 5 HELX_P HELX_P11 11 TRP A 129 ? LEU A 140 ? TRP A 284 LEU A 295 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 48 SG ? ? ? 1_555 A CYS 125 SG ? ? A CYS 203 A CYS 280 1_455 ? ? ? ? ? ? ? 2.030 ? ? covale1 covale both ? A ILE 10 C ? ? ? 1_555 A CSO 11 N ? ? A ILE 165 A CSO 166 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale2 covale both ? A CSO 11 C ? ? ? 1_555 A TYR 12 N ? ? A CSO 166 A TYR 167 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale3 covale both ? A LEU 34 C ? ? ? 1_555 A MLY 35 N ? ? A LEU 189 A MLY 190 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale4 covale both ? A MLY 35 C ? ? ? 1_555 A LEU 36 N ? ? A MLY 190 A LEU 191 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale5 covale both ? A GLU 58 C ? ? ? 1_555 A MLY 59 N ? ? A GLU 213 A MLY 214 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale6 covale both ? A MLY 59 C ? ? ? 1_555 A ARG 60 N ? ? A MLY 214 A ARG 215 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale7 covale both ? A GLU 77 C ? ? ? 1_555 A CSO 78 N ? ? A GLU 232 A CSO 233 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale8 covale both ? A CSO 78 C ? ? ? 1_555 A ASP 79 N ? ? A CSO 233 A ASP 234 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale9 covale both ? A THR 82 C ? ? ? 1_555 A MLY 83 N ? ? A THR 237 A MLY 238 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale10 covale both ? A MLY 83 C ? ? ? 1_555 A PHE 84 N ? ? A MLY 238 A PHE 239 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale11 covale both ? A ILE 100 C ? ? ? 1_555 A MLY 101 N ? ? A ILE 255 A MLY 256 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale12 covale both ? A MLY 101 C ? ? ? 1_555 A TYR 102 N ? ? A MLY 256 A TYR 257 1_555 ? ? ? ? ? ? ? 1.317 ? ? covale13 covale both ? A TYR 102 C ? ? ? 1_555 A MLY 103 N ? ? A TYR 257 A MLY 258 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale14 covale both ? A MLY 103 C ? ? ? 1_555 A ALA 104 N ? ? A MLY 258 A ALA 259 1_555 ? ? ? ? ? ? ? 1.325 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TRP A 50 ? SER A 51 ? TRP A 205 SER A 206 A 2 LEU A 36 ? VAL A 38 ? LEU A 191 VAL A 193 A 3 PHE A 6 ? CSO A 11 ? PHE A 161 CSO A 166 A 4 CYS A 61 ? VAL A 68 ? CYS A 216 VAL A 223 A 5 LEU A 97 ? MLY A 101 ? LEU A 252 MLY A 256 A 6 CYS A 119 ? ASP A 120 ? CYS A 274 ASP A 275 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O TRP A 50 ? O TRP A 205 N VAL A 38 ? N VAL A 193 A 2 3 O CYS A 37 ? O CYS A 192 N ILE A 10 ? N ILE A 165 A 3 4 N CSO A 11 ? N CSO A 166 O VAL A 65 ? O VAL A 220 A 4 5 N VAL A 66 ? N VAL A 221 O ILE A 100 ? O ILE A 255 A 5 6 N PRO A 99 ? N PRO A 254 O CYS A 119 ? O CYS A 274 # _database_PDB_matrix.entry_id 4DOM _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4DOM _atom_sites.fract_transf_matrix[1][1] 0.029927 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017244 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016001 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 156 156 ASP ASP A . n A 1 2 MET 2 157 157 MET MET A . n A 1 3 PRO 3 158 158 PRO PRO A . n A 1 4 GLU 4 159 159 GLU GLU A . n A 1 5 ARG 5 160 160 ARG ARG A . n A 1 6 PHE 6 161 161 PHE PHE A . n A 1 7 ASP 7 162 162 ASP ASP A . n A 1 8 ALA 8 163 163 ALA ALA A . n A 1 9 PHE 9 164 164 PHE PHE A . n A 1 10 ILE 10 165 165 ILE ILE A . n A 1 11 CSO 11 166 166 CSO CSO A . n A 1 12 TYR 12 167 167 TYR TYR A . n A 1 13 CYS 13 168 168 CYS CYS A . n A 1 14 PRO 14 169 169 PRO PRO A . n A 1 15 SER 15 170 170 SER SER A . n A 1 16 ASP 16 171 171 ASP ASP A . n A 1 17 ILE 17 172 172 ILE ILE A . n A 1 18 GLN 18 173 173 GLN GLN A . n A 1 19 PHE 19 174 174 PHE PHE A . n A 1 20 VAL 20 175 175 VAL VAL A . n A 1 21 GLN 21 176 176 GLN GLN A . n A 1 22 GLU 22 177 177 GLU GLU A . n A 1 23 MET 23 178 178 MET MET A . n A 1 24 ILE 24 179 179 ILE ILE A . n A 1 25 ARG 25 180 180 ARG ARG A . n A 1 26 GLN 26 181 181 GLN GLN A . n A 1 27 LEU 27 182 182 LEU LEU A . n A 1 28 GLU 28 183 183 GLU GLU A . n A 1 29 GLN 29 184 184 GLN GLN A . n A 1 30 THR 30 185 185 THR THR A . n A 1 31 ASN 31 186 186 ASN ASN A . n A 1 32 TYR 32 187 187 TYR TYR A . n A 1 33 ARG 33 188 188 ARG ARG A . n A 1 34 LEU 34 189 189 LEU LEU A . n A 1 35 MLY 35 190 190 MLY MLY A . n A 1 36 LEU 36 191 191 LEU LEU A . n A 1 37 CYS 37 192 192 CYS CYS A . n A 1 38 VAL 38 193 193 VAL VAL A . n A 1 39 SER 39 194 194 SER SER A . n A 1 40 ASP 40 195 195 ASP ASP A . n A 1 41 ARG 41 196 196 ARG ARG A . n A 1 42 ASP 42 197 197 ASP ASP A . n A 1 43 VAL 43 198 198 VAL VAL A . n A 1 44 LEU 44 199 199 LEU LEU A . n A 1 45 PRO 45 200 200 PRO PRO A . n A 1 46 GLY 46 201 201 GLY GLY A . n A 1 47 THR 47 202 202 THR THR A . n A 1 48 CYS 48 203 203 CYS CYS A . n A 1 49 VAL 49 204 204 VAL VAL A . n A 1 50 TRP 50 205 205 TRP TRP A . n A 1 51 SER 51 206 206 SER SER A . n A 1 52 ILE 52 207 207 ILE ILE A . n A 1 53 ALA 53 208 208 ALA ALA A . n A 1 54 SER 54 209 209 SER SER A . n A 1 55 GLU 55 210 210 GLU GLU A . n A 1 56 LEU 56 211 211 LEU LEU A . n A 1 57 ILE 57 212 212 ILE ILE A . n A 1 58 GLU 58 213 213 GLU GLU A . n A 1 59 MLY 59 214 214 MLY MLY A . n A 1 60 ARG 60 215 215 ARG ARG A . n A 1 61 CYS 61 216 216 CYS CYS A . n A 1 62 ARG 62 217 217 ARG ARG A . n A 1 63 ARG 63 218 218 ARG ARG A . n A 1 64 MET 64 219 219 MET MET A . n A 1 65 VAL 65 220 220 VAL VAL A . n A 1 66 VAL 66 221 221 VAL VAL A . n A 1 67 VAL 67 222 222 VAL VAL A . n A 1 68 VAL 68 223 223 VAL VAL A . n A 1 69 SER 69 224 224 SER SER A . n A 1 70 ASP 70 225 225 ASP ASP A . n A 1 71 ASP 71 226 226 ASP ASP A . n A 1 72 TYR 72 227 227 TYR TYR A . n A 1 73 LEU 73 228 228 LEU LEU A . n A 1 74 GLN 74 229 229 GLN GLN A . n A 1 75 SER 75 230 230 SER SER A . n A 1 76 LYS 76 231 231 LYS LYS A . n A 1 77 GLU 77 232 232 GLU GLU A . n A 1 78 CSO 78 233 233 CSO CSO A . n A 1 79 ASP 79 234 234 ASP ASP A . n A 1 80 PHE 80 235 235 PHE PHE A . n A 1 81 GLN 81 236 236 GLN GLN A . n A 1 82 THR 82 237 237 THR THR A . n A 1 83 MLY 83 238 238 MLY MLY A . n A 1 84 PHE 84 239 239 PHE PHE A . n A 1 85 ALA 85 240 240 ALA ALA A . n A 1 86 LEU 86 241 241 LEU LEU A . n A 1 87 SER 87 242 242 SER SER A . n A 1 88 LEU 88 243 243 LEU LEU A . n A 1 89 SER 89 244 244 SER SER A . n A 1 90 PRO 90 245 245 PRO PRO A . n A 1 91 GLY 91 246 246 GLY GLY A . n A 1 92 ALA 92 247 247 ALA ALA A . n A 1 93 HIS 93 248 248 HIS HIS A . n A 1 94 GLN 94 249 249 GLN GLN A . n A 1 95 LYS 95 250 250 LYS LYS A . n A 1 96 ARG 96 251 251 ARG ARG A . n A 1 97 LEU 97 252 252 LEU LEU A . n A 1 98 ILE 98 253 253 ILE ILE A . n A 1 99 PRO 99 254 254 PRO PRO A . n A 1 100 ILE 100 255 255 ILE ILE A . n A 1 101 MLY 101 256 256 MLY MLY A . n A 1 102 TYR 102 257 257 TYR TYR A . n A 1 103 MLY 103 258 258 MLY MLY A . n A 1 104 ALA 104 259 259 ALA ALA A . n A 1 105 MET 105 260 260 MET MET A . n A 1 106 LYS 106 261 261 LYS LYS A . n A 1 107 LYS 107 262 262 LYS LYS A . n A 1 108 GLU 108 263 263 GLU GLU A . n A 1 109 PHE 109 264 264 PHE PHE A . n A 1 110 PRO 110 265 265 PRO PRO A . n A 1 111 SER 111 266 266 SER SER A . n A 1 112 ILE 112 267 267 ILE ILE A . n A 1 113 LEU 113 268 268 LEU LEU A . n A 1 114 ARG 114 269 269 ARG ARG A . n A 1 115 PHE 115 270 270 PHE PHE A . n A 1 116 ILE 116 271 271 ILE ILE A . n A 1 117 THR 117 272 272 THR THR A . n A 1 118 VAL 118 273 273 VAL VAL A . n A 1 119 CYS 119 274 274 CYS CYS A . n A 1 120 ASP 120 275 275 ASP ASP A . n A 1 121 TYR 121 276 276 TYR TYR A . n A 1 122 THR 122 277 277 THR THR A . n A 1 123 ASN 123 278 278 ASN ASN A . n A 1 124 PRO 124 279 279 PRO PRO A . n A 1 125 CYS 125 280 280 CYS CYS A . n A 1 126 THR 126 281 281 THR THR A . n A 1 127 LYS 127 282 282 LYS LYS A . n A 1 128 SER 128 283 283 SER SER A . n A 1 129 TRP 129 284 284 TRP TRP A . n A 1 130 PHE 130 285 285 PHE PHE A . n A 1 131 TRP 131 286 286 TRP TRP A . n A 1 132 THR 132 287 287 THR THR A . n A 1 133 ARG 133 288 288 ARG ARG A . n A 1 134 LEU 134 289 289 LEU LEU A . n A 1 135 ALA 135 290 290 ALA ALA A . n A 1 136 LYS 136 291 291 LYS LYS A . n A 1 137 ALA 137 292 292 ALA ALA A . n A 1 138 LEU 138 293 293 LEU LEU A . n A 1 139 SER 139 294 294 SER SER A . n A 1 140 LEU 140 295 295 LEU LEU A . n A 1 141 PRO 141 296 296 PRO PRO A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 301 1 HOH HOH A . B 2 HOH 2 302 2 HOH HOH A . B 2 HOH 3 303 3 HOH HOH A . B 2 HOH 4 304 4 HOH HOH A . B 2 HOH 5 305 5 HOH HOH A . B 2 HOH 6 306 6 HOH HOH A . B 2 HOH 7 307 7 HOH HOH A . B 2 HOH 8 308 8 HOH HOH A . B 2 HOH 9 309 9 HOH HOH A . B 2 HOH 10 310 10 HOH HOH A . B 2 HOH 11 311 11 HOH HOH A . B 2 HOH 12 312 12 HOH HOH A . B 2 HOH 13 313 13 HOH HOH A . B 2 HOH 14 314 14 HOH HOH A . B 2 HOH 15 315 15 HOH HOH A . B 2 HOH 16 316 16 HOH HOH A . B 2 HOH 17 317 17 HOH HOH A . B 2 HOH 18 318 18 HOH HOH A . B 2 HOH 19 319 19 HOH HOH A . B 2 HOH 20 320 20 HOH HOH A . B 2 HOH 21 321 21 HOH HOH A . B 2 HOH 22 322 22 HOH HOH A . B 2 HOH 23 323 23 HOH HOH A . B 2 HOH 24 324 24 HOH HOH A . B 2 HOH 25 325 25 HOH HOH A . B 2 HOH 26 326 26 HOH HOH A . B 2 HOH 27 327 27 HOH HOH A . B 2 HOH 28 328 28 HOH HOH A . B 2 HOH 29 329 29 HOH HOH A . B 2 HOH 30 330 30 HOH HOH A . B 2 HOH 31 331 31 HOH HOH A . B 2 HOH 32 332 32 HOH HOH A . B 2 HOH 33 333 33 HOH HOH A . B 2 HOH 34 334 34 HOH HOH A . B 2 HOH 35 335 35 HOH HOH A . B 2 HOH 36 336 36 HOH HOH A . B 2 HOH 37 337 37 HOH HOH A . B 2 HOH 38 338 38 HOH HOH A . B 2 HOH 39 339 39 HOH HOH A . B 2 HOH 40 340 40 HOH HOH A . B 2 HOH 41 341 41 HOH HOH A . B 2 HOH 42 342 42 HOH HOH A . B 2 HOH 43 343 43 HOH HOH A . B 2 HOH 44 344 44 HOH HOH A . B 2 HOH 45 345 45 HOH HOH A . B 2 HOH 46 346 46 HOH HOH A . B 2 HOH 47 347 47 HOH HOH A . B 2 HOH 48 348 48 HOH HOH A . B 2 HOH 49 349 49 HOH HOH A . B 2 HOH 50 350 50 HOH HOH A . B 2 HOH 51 351 51 HOH HOH A . B 2 HOH 52 352 52 HOH HOH A . B 2 HOH 53 353 53 HOH HOH A . B 2 HOH 54 354 54 HOH HOH A . B 2 HOH 55 355 55 HOH HOH A . B 2 HOH 56 356 56 HOH HOH A . B 2 HOH 57 357 57 HOH HOH A . B 2 HOH 58 358 58 HOH HOH A . B 2 HOH 59 359 59 HOH HOH A . B 2 HOH 60 360 60 HOH HOH A . B 2 HOH 61 361 61 HOH HOH A . B 2 HOH 62 362 62 HOH HOH A . B 2 HOH 63 363 63 HOH HOH A . B 2 HOH 64 364 64 HOH HOH A . B 2 HOH 65 365 65 HOH HOH A . B 2 HOH 66 366 66 HOH HOH A . B 2 HOH 67 367 67 HOH HOH A . B 2 HOH 68 368 68 HOH HOH A . B 2 HOH 69 369 69 HOH HOH A . B 2 HOH 70 370 70 HOH HOH A . B 2 HOH 71 371 71 HOH HOH A . B 2 HOH 72 372 72 HOH HOH A . B 2 HOH 73 373 73 HOH HOH A . B 2 HOH 74 374 74 HOH HOH A . B 2 HOH 75 375 75 HOH HOH A . B 2 HOH 76 376 76 HOH HOH A . B 2 HOH 77 377 77 HOH HOH A . B 2 HOH 78 378 78 HOH HOH A . B 2 HOH 79 379 79 HOH HOH A . B 2 HOH 80 380 80 HOH HOH A . B 2 HOH 81 381 81 HOH HOH A . B 2 HOH 82 382 82 HOH HOH A . B 2 HOH 83 383 83 HOH HOH A . B 2 HOH 84 384 84 HOH HOH A . B 2 HOH 85 385 85 HOH HOH A . B 2 HOH 86 386 86 HOH HOH A . B 2 HOH 87 387 87 HOH HOH A . B 2 HOH 88 388 88 HOH HOH A . B 2 HOH 89 389 89 HOH HOH A . B 2 HOH 90 390 90 HOH HOH A . B 2 HOH 91 391 91 HOH HOH A . B 2 HOH 92 392 92 HOH HOH A . B 2 HOH 93 393 93 HOH HOH A . B 2 HOH 94 394 94 HOH HOH A . B 2 HOH 95 395 95 HOH HOH A . B 2 HOH 96 396 96 HOH HOH A . B 2 HOH 97 397 97 HOH HOH A . B 2 HOH 98 398 98 HOH HOH A . B 2 HOH 99 399 99 HOH HOH A . B 2 HOH 100 400 100 HOH HOH A . B 2 HOH 101 401 101 HOH HOH A . B 2 HOH 102 402 102 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A CSO 11 A CSO 166 ? CYS S-HYDROXYCYSTEINE 2 A MLY 35 A MLY 190 ? LYS N-DIMETHYL-LYSINE 3 A MLY 59 A MLY 214 ? LYS N-DIMETHYL-LYSINE 4 A CSO 78 A CSO 233 ? CYS S-HYDROXYCYSTEINE 5 A MLY 83 A MLY 238 ? LYS N-DIMETHYL-LYSINE 6 A MLY 101 A MLY 256 ? LYS N-DIMETHYL-LYSINE 7 A MLY 103 A MLY 258 ? LYS N-DIMETHYL-LYSINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-04-10 2 'Structure model' 1 1 2013-04-24 3 'Structure model' 1 2 2013-05-08 4 'Structure model' 1 3 2019-07-17 5 'Structure model' 1 4 2023-09-13 6 'Structure model' 1 5 2023-12-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' Advisory 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' 7 5 'Structure model' Advisory 8 5 'Structure model' 'Data collection' 9 5 'Structure model' 'Database references' 10 5 'Structure model' 'Refinement description' 11 6 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' pdbx_unobs_or_zero_occ_atoms 2 4 'Structure model' software 3 4 'Structure model' struct_conn 4 5 'Structure model' chem_comp_atom 5 5 'Structure model' chem_comp_bond 6 5 'Structure model' database_2 7 5 'Structure model' pdbx_initial_refinement_model 8 5 'Structure model' pdbx_unobs_or_zero_occ_atoms 9 5 'Structure model' struct_ref_seq_dif 10 6 'Structure model' chem_comp_atom 11 6 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.name' 3 4 'Structure model' '_software.version' 4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 5 'Structure model' '_database_2.pdbx_DOI' 6 5 'Structure model' '_database_2.pdbx_database_accession' 7 5 'Structure model' '_struct_ref_seq_dif.details' 8 6 'Structure model' '_chem_comp_atom.atom_id' 9 6 'Structure model' '_chem_comp_bond.atom_id_2' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHENIX refinement '(phenix.refine: 1.7_650)' ? 1 AMoRE phasing . ? 2 CNS refinement . ? 3 ADSC 'data collection' Quantum ? 4 HKL-2000 'data reduction' . ? 5 HKL-2000 'data scaling' . ? 6 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A ASP 156 ? CG ? A ASP 1 CG 2 1 Y 0 A ASP 156 ? OD1 ? A ASP 1 OD1 3 1 Y 0 A ASP 156 ? OD2 ? A ASP 1 OD2 4 1 Y 0 A VAL 204 ? CG1 ? A VAL 49 CG1 5 1 Y 0 A PRO 245 ? CB ? A PRO 90 CB 6 1 Y 0 A PRO 245 ? CG ? A PRO 90 CG 7 1 Y 0 A LYS 262 ? CD ? A LYS 107 CD 8 1 Y 0 A LYS 262 ? CE ? A LYS 107 CE 9 1 Y 0 A LYS 262 ? NZ ? A LYS 107 NZ 10 1 Y 0 A ILE 267 ? CD1 ? A ILE 112 CD1 11 1 Y 0 A PHE 270 ? CG ? A PHE 115 CG 12 1 Y 0 A PHE 270 ? CD1 ? A PHE 115 CD1 13 1 Y 0 A PHE 270 ? CD2 ? A PHE 115 CD2 14 1 Y 0 A PHE 270 ? CE1 ? A PHE 115 CE1 15 1 Y 0 A PHE 270 ? CE2 ? A PHE 115 CE2 16 1 Y 0 A PHE 270 ? CZ ? A PHE 115 CZ 17 1 Y 0 A THR 281 ? N ? A THR 126 N 18 1 Y 0 A LYS 282 ? CG ? A LYS 127 CG 19 1 Y 0 A LYS 282 ? CD ? A LYS 127 CD 20 1 Y 0 A LYS 282 ? CE ? A LYS 127 CE 21 1 Y 0 A LYS 282 ? NZ ? A LYS 127 NZ 22 1 Y 0 A TRP 284 ? CD2 ? A TRP 129 CD2 23 1 Y 0 A TRP 284 ? CE3 ? A TRP 129 CE3 24 1 Y 0 A TRP 284 ? CZ2 ? A TRP 129 CZ2 25 1 Y 0 A TRP 284 ? CZ3 ? A TRP 129 CZ3 26 1 Y 0 A TRP 284 ? CH2 ? A TRP 129 CH2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CSO N N N N 74 CSO CA C N R 75 CSO CB C N N 76 CSO SG S N N 77 CSO C C N N 78 CSO O O N N 79 CSO OXT O N N 80 CSO OD O N N 81 CSO H H N N 82 CSO H2 H N N 83 CSO HA H N N 84 CSO HB2 H N N 85 CSO HB3 H N N 86 CSO HXT H N N 87 CSO HD H N N 88 CYS N N N N 89 CYS CA C N R 90 CYS C C N N 91 CYS O O N N 92 CYS CB C N N 93 CYS SG S N N 94 CYS OXT O N N 95 CYS H H N N 96 CYS H2 H N N 97 CYS HA H N N 98 CYS HB2 H N N 99 CYS HB3 H N N 100 CYS HG H N N 101 CYS HXT H N N 102 GLN N N N N 103 GLN CA C N S 104 GLN C C N N 105 GLN O O N N 106 GLN CB C N N 107 GLN CG C N N 108 GLN CD C N N 109 GLN OE1 O N N 110 GLN NE2 N N N 111 GLN OXT O N N 112 GLN H H N N 113 GLN H2 H N N 114 GLN HA H N N 115 GLN HB2 H N N 116 GLN HB3 H N N 117 GLN HG2 H N N 118 GLN HG3 H N N 119 GLN HE21 H N N 120 GLN HE22 H N N 121 GLN HXT H N N 122 GLU N N N N 123 GLU CA C N S 124 GLU C C N N 125 GLU O O N N 126 GLU CB C N N 127 GLU CG C N N 128 GLU CD C N N 129 GLU OE1 O N N 130 GLU OE2 O N N 131 GLU OXT O N N 132 GLU H H N N 133 GLU H2 H N N 134 GLU HA H N N 135 GLU HB2 H N N 136 GLU HB3 H N N 137 GLU HG2 H N N 138 GLU HG3 H N N 139 GLU HE2 H N N 140 GLU HXT H N N 141 GLY N N N N 142 GLY CA C N N 143 GLY C C N N 144 GLY O O N N 145 GLY OXT O N N 146 GLY H H N N 147 GLY H2 H N N 148 GLY HA2 H N N 149 GLY HA3 H N N 150 GLY HXT H N N 151 HIS N N N N 152 HIS CA C N S 153 HIS C C N N 154 HIS O O N N 155 HIS CB C N N 156 HIS CG C Y N 157 HIS ND1 N Y N 158 HIS CD2 C Y N 159 HIS CE1 C Y N 160 HIS NE2 N Y N 161 HIS OXT O N N 162 HIS H H N N 163 HIS H2 H N N 164 HIS HA H N N 165 HIS HB2 H N N 166 HIS HB3 H N N 167 HIS HD1 H N N 168 HIS HD2 H N N 169 HIS HE1 H N N 170 HIS HE2 H N N 171 HIS HXT H N N 172 HOH O O N N 173 HOH H1 H N N 174 HOH H2 H N N 175 ILE N N N N 176 ILE CA C N S 177 ILE C C N N 178 ILE O O N N 179 ILE CB C N S 180 ILE CG1 C N N 181 ILE CG2 C N N 182 ILE CD1 C N N 183 ILE OXT O N N 184 ILE H H N N 185 ILE H2 H N N 186 ILE HA H N N 187 ILE HB H N N 188 ILE HG12 H N N 189 ILE HG13 H N N 190 ILE HG21 H N N 191 ILE HG22 H N N 192 ILE HG23 H N N 193 ILE HD11 H N N 194 ILE HD12 H N N 195 ILE HD13 H N N 196 ILE HXT H N N 197 LEU N N N N 198 LEU CA C N S 199 LEU C C N N 200 LEU O O N N 201 LEU CB C N N 202 LEU CG C N N 203 LEU CD1 C N N 204 LEU CD2 C N N 205 LEU OXT O N N 206 LEU H H N N 207 LEU H2 H N N 208 LEU HA H N N 209 LEU HB2 H N N 210 LEU HB3 H N N 211 LEU HG H N N 212 LEU HD11 H N N 213 LEU HD12 H N N 214 LEU HD13 H N N 215 LEU HD21 H N N 216 LEU HD22 H N N 217 LEU HD23 H N N 218 LEU HXT H N N 219 LYS N N N N 220 LYS CA C N S 221 LYS C C N N 222 LYS O O N N 223 LYS CB C N N 224 LYS CG C N N 225 LYS CD C N N 226 LYS CE C N N 227 LYS NZ N N N 228 LYS OXT O N N 229 LYS H H N N 230 LYS H2 H N N 231 LYS HA H N N 232 LYS HB2 H N N 233 LYS HB3 H N N 234 LYS HG2 H N N 235 LYS HG3 H N N 236 LYS HD2 H N N 237 LYS HD3 H N N 238 LYS HE2 H N N 239 LYS HE3 H N N 240 LYS HZ1 H N N 241 LYS HZ2 H N N 242 LYS HZ3 H N N 243 LYS HXT H N N 244 MET N N N N 245 MET CA C N S 246 MET C C N N 247 MET O O N N 248 MET CB C N N 249 MET CG C N N 250 MET SD S N N 251 MET CE C N N 252 MET OXT O N N 253 MET H H N N 254 MET H2 H N N 255 MET HA H N N 256 MET HB2 H N N 257 MET HB3 H N N 258 MET HG2 H N N 259 MET HG3 H N N 260 MET HE1 H N N 261 MET HE2 H N N 262 MET HE3 H N N 263 MET HXT H N N 264 MLY N N N N 265 MLY CA C N S 266 MLY CB C N N 267 MLY CG C N N 268 MLY CD C N N 269 MLY CE C N N 270 MLY NZ N N N 271 MLY CH1 C N N 272 MLY CH2 C N N 273 MLY C C N N 274 MLY O O N N 275 MLY OXT O N N 276 MLY H H N N 277 MLY H2 H N N 278 MLY HA H N N 279 MLY HB2 H N N 280 MLY HB3 H N N 281 MLY HG2 H N N 282 MLY HG3 H N N 283 MLY HD2 H N N 284 MLY HD3 H N N 285 MLY HE2 H N N 286 MLY HE3 H N N 287 MLY HH11 H N N 288 MLY HH12 H N N 289 MLY HH13 H N N 290 MLY HH21 H N N 291 MLY HH22 H N N 292 MLY HH23 H N N 293 MLY HXT H N N 294 PHE N N N N 295 PHE CA C N S 296 PHE C C N N 297 PHE O O N N 298 PHE CB C N N 299 PHE CG C Y N 300 PHE CD1 C Y N 301 PHE CD2 C Y N 302 PHE CE1 C Y N 303 PHE CE2 C Y N 304 PHE CZ C Y N 305 PHE OXT O N N 306 PHE H H N N 307 PHE H2 H N N 308 PHE HA H N N 309 PHE HB2 H N N 310 PHE HB3 H N N 311 PHE HD1 H N N 312 PHE HD2 H N N 313 PHE HE1 H N N 314 PHE HE2 H N N 315 PHE HZ H N N 316 PHE HXT H N N 317 PRO N N N N 318 PRO CA C N S 319 PRO C C N N 320 PRO O O N N 321 PRO CB C N N 322 PRO CG C N N 323 PRO CD C N N 324 PRO OXT O N N 325 PRO H H N N 326 PRO HA H N N 327 PRO HB2 H N N 328 PRO HB3 H N N 329 PRO HG2 H N N 330 PRO HG3 H N N 331 PRO HD2 H N N 332 PRO HD3 H N N 333 PRO HXT H N N 334 SER N N N N 335 SER CA C N S 336 SER C C N N 337 SER O O N N 338 SER CB C N N 339 SER OG O N N 340 SER OXT O N N 341 SER H H N N 342 SER H2 H N N 343 SER HA H N N 344 SER HB2 H N N 345 SER HB3 H N N 346 SER HG H N N 347 SER HXT H N N 348 THR N N N N 349 THR CA C N S 350 THR C C N N 351 THR O O N N 352 THR CB C N R 353 THR OG1 O N N 354 THR CG2 C N N 355 THR OXT O N N 356 THR H H N N 357 THR H2 H N N 358 THR HA H N N 359 THR HB H N N 360 THR HG1 H N N 361 THR HG21 H N N 362 THR HG22 H N N 363 THR HG23 H N N 364 THR HXT H N N 365 TRP N N N N 366 TRP CA C N S 367 TRP C C N N 368 TRP O O N N 369 TRP CB C N N 370 TRP CG C Y N 371 TRP CD1 C Y N 372 TRP CD2 C Y N 373 TRP NE1 N Y N 374 TRP CE2 C Y N 375 TRP CE3 C Y N 376 TRP CZ2 C Y N 377 TRP CZ3 C Y N 378 TRP CH2 C Y N 379 TRP OXT O N N 380 TRP H H N N 381 TRP H2 H N N 382 TRP HA H N N 383 TRP HB2 H N N 384 TRP HB3 H N N 385 TRP HD1 H N N 386 TRP HE1 H N N 387 TRP HE3 H N N 388 TRP HZ2 H N N 389 TRP HZ3 H N N 390 TRP HH2 H N N 391 TRP HXT H N N 392 TYR N N N N 393 TYR CA C N S 394 TYR C C N N 395 TYR O O N N 396 TYR CB C N N 397 TYR CG C Y N 398 TYR CD1 C Y N 399 TYR CD2 C Y N 400 TYR CE1 C Y N 401 TYR CE2 C Y N 402 TYR CZ C Y N 403 TYR OH O N N 404 TYR OXT O N N 405 TYR H H N N 406 TYR H2 H N N 407 TYR HA H N N 408 TYR HB2 H N N 409 TYR HB3 H N N 410 TYR HD1 H N N 411 TYR HD2 H N N 412 TYR HE1 H N N 413 TYR HE2 H N N 414 TYR HH H N N 415 TYR HXT H N N 416 VAL N N N N 417 VAL CA C N S 418 VAL C C N N 419 VAL O O N N 420 VAL CB C N N 421 VAL CG1 C N N 422 VAL CG2 C N N 423 VAL OXT O N N 424 VAL H H N N 425 VAL H2 H N N 426 VAL HA H N N 427 VAL HB H N N 428 VAL HG11 H N N 429 VAL HG12 H N N 430 VAL HG13 H N N 431 VAL HG21 H N N 432 VAL HG22 H N N 433 VAL HG23 H N N 434 VAL HXT H N N 435 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CSO N CA sing N N 70 CSO N H sing N N 71 CSO N H2 sing N N 72 CSO CA CB sing N N 73 CSO CA C sing N N 74 CSO CA HA sing N N 75 CSO CB SG sing N N 76 CSO CB HB2 sing N N 77 CSO CB HB3 sing N N 78 CSO SG OD sing N N 79 CSO C O doub N N 80 CSO C OXT sing N N 81 CSO OXT HXT sing N N 82 CSO OD HD sing N N 83 CYS N CA sing N N 84 CYS N H sing N N 85 CYS N H2 sing N N 86 CYS CA C sing N N 87 CYS CA CB sing N N 88 CYS CA HA sing N N 89 CYS C O doub N N 90 CYS C OXT sing N N 91 CYS CB SG sing N N 92 CYS CB HB2 sing N N 93 CYS CB HB3 sing N N 94 CYS SG HG sing N N 95 CYS OXT HXT sing N N 96 GLN N CA sing N N 97 GLN N H sing N N 98 GLN N H2 sing N N 99 GLN CA C sing N N 100 GLN CA CB sing N N 101 GLN CA HA sing N N 102 GLN C O doub N N 103 GLN C OXT sing N N 104 GLN CB CG sing N N 105 GLN CB HB2 sing N N 106 GLN CB HB3 sing N N 107 GLN CG CD sing N N 108 GLN CG HG2 sing N N 109 GLN CG HG3 sing N N 110 GLN CD OE1 doub N N 111 GLN CD NE2 sing N N 112 GLN NE2 HE21 sing N N 113 GLN NE2 HE22 sing N N 114 GLN OXT HXT sing N N 115 GLU N CA sing N N 116 GLU N H sing N N 117 GLU N H2 sing N N 118 GLU CA C sing N N 119 GLU CA CB sing N N 120 GLU CA HA sing N N 121 GLU C O doub N N 122 GLU C OXT sing N N 123 GLU CB CG sing N N 124 GLU CB HB2 sing N N 125 GLU CB HB3 sing N N 126 GLU CG CD sing N N 127 GLU CG HG2 sing N N 128 GLU CG HG3 sing N N 129 GLU CD OE1 doub N N 130 GLU CD OE2 sing N N 131 GLU OE2 HE2 sing N N 132 GLU OXT HXT sing N N 133 GLY N CA sing N N 134 GLY N H sing N N 135 GLY N H2 sing N N 136 GLY CA C sing N N 137 GLY CA HA2 sing N N 138 GLY CA HA3 sing N N 139 GLY C O doub N N 140 GLY C OXT sing N N 141 GLY OXT HXT sing N N 142 HIS N CA sing N N 143 HIS N H sing N N 144 HIS N H2 sing N N 145 HIS CA C sing N N 146 HIS CA CB sing N N 147 HIS CA HA sing N N 148 HIS C O doub N N 149 HIS C OXT sing N N 150 HIS CB CG sing N N 151 HIS CB HB2 sing N N 152 HIS CB HB3 sing N N 153 HIS CG ND1 sing Y N 154 HIS CG CD2 doub Y N 155 HIS ND1 CE1 doub Y N 156 HIS ND1 HD1 sing N N 157 HIS CD2 NE2 sing Y N 158 HIS CD2 HD2 sing N N 159 HIS CE1 NE2 sing Y N 160 HIS CE1 HE1 sing N N 161 HIS NE2 HE2 sing N N 162 HIS OXT HXT sing N N 163 HOH O H1 sing N N 164 HOH O H2 sing N N 165 ILE N CA sing N N 166 ILE N H sing N N 167 ILE N H2 sing N N 168 ILE CA C sing N N 169 ILE CA CB sing N N 170 ILE CA HA sing N N 171 ILE C O doub N N 172 ILE C OXT sing N N 173 ILE CB CG1 sing N N 174 ILE CB CG2 sing N N 175 ILE CB HB sing N N 176 ILE CG1 CD1 sing N N 177 ILE CG1 HG12 sing N N 178 ILE CG1 HG13 sing N N 179 ILE CG2 HG21 sing N N 180 ILE CG2 HG22 sing N N 181 ILE CG2 HG23 sing N N 182 ILE CD1 HD11 sing N N 183 ILE CD1 HD12 sing N N 184 ILE CD1 HD13 sing N N 185 ILE OXT HXT sing N N 186 LEU N CA sing N N 187 LEU N H sing N N 188 LEU N H2 sing N N 189 LEU CA C sing N N 190 LEU CA CB sing N N 191 LEU CA HA sing N N 192 LEU C O doub N N 193 LEU C OXT sing N N 194 LEU CB CG sing N N 195 LEU CB HB2 sing N N 196 LEU CB HB3 sing N N 197 LEU CG CD1 sing N N 198 LEU CG CD2 sing N N 199 LEU CG HG sing N N 200 LEU CD1 HD11 sing N N 201 LEU CD1 HD12 sing N N 202 LEU CD1 HD13 sing N N 203 LEU CD2 HD21 sing N N 204 LEU CD2 HD22 sing N N 205 LEU CD2 HD23 sing N N 206 LEU OXT HXT sing N N 207 LYS N CA sing N N 208 LYS N H sing N N 209 LYS N H2 sing N N 210 LYS CA C sing N N 211 LYS CA CB sing N N 212 LYS CA HA sing N N 213 LYS C O doub N N 214 LYS C OXT sing N N 215 LYS CB CG sing N N 216 LYS CB HB2 sing N N 217 LYS CB HB3 sing N N 218 LYS CG CD sing N N 219 LYS CG HG2 sing N N 220 LYS CG HG3 sing N N 221 LYS CD CE sing N N 222 LYS CD HD2 sing N N 223 LYS CD HD3 sing N N 224 LYS CE NZ sing N N 225 LYS CE HE2 sing N N 226 LYS CE HE3 sing N N 227 LYS NZ HZ1 sing N N 228 LYS NZ HZ2 sing N N 229 LYS NZ HZ3 sing N N 230 LYS OXT HXT sing N N 231 MET N CA sing N N 232 MET N H sing N N 233 MET N H2 sing N N 234 MET CA C sing N N 235 MET CA CB sing N N 236 MET CA HA sing N N 237 MET C O doub N N 238 MET C OXT sing N N 239 MET CB CG sing N N 240 MET CB HB2 sing N N 241 MET CB HB3 sing N N 242 MET CG SD sing N N 243 MET CG HG2 sing N N 244 MET CG HG3 sing N N 245 MET SD CE sing N N 246 MET CE HE1 sing N N 247 MET CE HE2 sing N N 248 MET CE HE3 sing N N 249 MET OXT HXT sing N N 250 MLY N CA sing N N 251 MLY N H sing N N 252 MLY N H2 sing N N 253 MLY CA CB sing N N 254 MLY CA C sing N N 255 MLY CA HA sing N N 256 MLY CB CG sing N N 257 MLY CB HB2 sing N N 258 MLY CB HB3 sing N N 259 MLY CG CD sing N N 260 MLY CG HG2 sing N N 261 MLY CG HG3 sing N N 262 MLY CD CE sing N N 263 MLY CD HD2 sing N N 264 MLY CD HD3 sing N N 265 MLY CE NZ sing N N 266 MLY CE HE2 sing N N 267 MLY CE HE3 sing N N 268 MLY NZ CH1 sing N N 269 MLY NZ CH2 sing N N 270 MLY CH1 HH11 sing N N 271 MLY CH1 HH12 sing N N 272 MLY CH1 HH13 sing N N 273 MLY CH2 HH21 sing N N 274 MLY CH2 HH22 sing N N 275 MLY CH2 HH23 sing N N 276 MLY C O doub N N 277 MLY C OXT sing N N 278 MLY OXT HXT sing N N 279 PHE N CA sing N N 280 PHE N H sing N N 281 PHE N H2 sing N N 282 PHE CA C sing N N 283 PHE CA CB sing N N 284 PHE CA HA sing N N 285 PHE C O doub N N 286 PHE C OXT sing N N 287 PHE CB CG sing N N 288 PHE CB HB2 sing N N 289 PHE CB HB3 sing N N 290 PHE CG CD1 doub Y N 291 PHE CG CD2 sing Y N 292 PHE CD1 CE1 sing Y N 293 PHE CD1 HD1 sing N N 294 PHE CD2 CE2 doub Y N 295 PHE CD2 HD2 sing N N 296 PHE CE1 CZ doub Y N 297 PHE CE1 HE1 sing N N 298 PHE CE2 CZ sing Y N 299 PHE CE2 HE2 sing N N 300 PHE CZ HZ sing N N 301 PHE OXT HXT sing N N 302 PRO N CA sing N N 303 PRO N CD sing N N 304 PRO N H sing N N 305 PRO CA C sing N N 306 PRO CA CB sing N N 307 PRO CA HA sing N N 308 PRO C O doub N N 309 PRO C OXT sing N N 310 PRO CB CG sing N N 311 PRO CB HB2 sing N N 312 PRO CB HB3 sing N N 313 PRO CG CD sing N N 314 PRO CG HG2 sing N N 315 PRO CG HG3 sing N N 316 PRO CD HD2 sing N N 317 PRO CD HD3 sing N N 318 PRO OXT HXT sing N N 319 SER N CA sing N N 320 SER N H sing N N 321 SER N H2 sing N N 322 SER CA C sing N N 323 SER CA CB sing N N 324 SER CA HA sing N N 325 SER C O doub N N 326 SER C OXT sing N N 327 SER CB OG sing N N 328 SER CB HB2 sing N N 329 SER CB HB3 sing N N 330 SER OG HG sing N N 331 SER OXT HXT sing N N 332 THR N CA sing N N 333 THR N H sing N N 334 THR N H2 sing N N 335 THR CA C sing N N 336 THR CA CB sing N N 337 THR CA HA sing N N 338 THR C O doub N N 339 THR C OXT sing N N 340 THR CB OG1 sing N N 341 THR CB CG2 sing N N 342 THR CB HB sing N N 343 THR OG1 HG1 sing N N 344 THR CG2 HG21 sing N N 345 THR CG2 HG22 sing N N 346 THR CG2 HG23 sing N N 347 THR OXT HXT sing N N 348 TRP N CA sing N N 349 TRP N H sing N N 350 TRP N H2 sing N N 351 TRP CA C sing N N 352 TRP CA CB sing N N 353 TRP CA HA sing N N 354 TRP C O doub N N 355 TRP C OXT sing N N 356 TRP CB CG sing N N 357 TRP CB HB2 sing N N 358 TRP CB HB3 sing N N 359 TRP CG CD1 doub Y N 360 TRP CG CD2 sing Y N 361 TRP CD1 NE1 sing Y N 362 TRP CD1 HD1 sing N N 363 TRP CD2 CE2 doub Y N 364 TRP CD2 CE3 sing Y N 365 TRP NE1 CE2 sing Y N 366 TRP NE1 HE1 sing N N 367 TRP CE2 CZ2 sing Y N 368 TRP CE3 CZ3 doub Y N 369 TRP CE3 HE3 sing N N 370 TRP CZ2 CH2 doub Y N 371 TRP CZ2 HZ2 sing N N 372 TRP CZ3 CH2 sing Y N 373 TRP CZ3 HZ3 sing N N 374 TRP CH2 HH2 sing N N 375 TRP OXT HXT sing N N 376 TYR N CA sing N N 377 TYR N H sing N N 378 TYR N H2 sing N N 379 TYR CA C sing N N 380 TYR CA CB sing N N 381 TYR CA HA sing N N 382 TYR C O doub N N 383 TYR C OXT sing N N 384 TYR CB CG sing N N 385 TYR CB HB2 sing N N 386 TYR CB HB3 sing N N 387 TYR CG CD1 doub Y N 388 TYR CG CD2 sing Y N 389 TYR CD1 CE1 sing Y N 390 TYR CD1 HD1 sing N N 391 TYR CD2 CE2 doub Y N 392 TYR CD2 HD2 sing N N 393 TYR CE1 CZ doub Y N 394 TYR CE1 HE1 sing N N 395 TYR CE2 CZ sing Y N 396 TYR CE2 HE2 sing N N 397 TYR CZ OH sing N N 398 TYR OH HH sing N N 399 TYR OXT HXT sing N N 400 VAL N CA sing N N 401 VAL N H sing N N 402 VAL N H2 sing N N 403 VAL CA C sing N N 404 VAL CA CB sing N N 405 VAL CA HA sing N N 406 VAL C O doub N N 407 VAL C OXT sing N N 408 VAL CB CG1 sing N N 409 VAL CB CG2 sing N N 410 VAL CB HB sing N N 411 VAL CG1 HG11 sing N N 412 VAL CG1 HG12 sing N N 413 VAL CG1 HG13 sing N N 414 VAL CG2 HG21 sing N N 415 VAL CG2 HG22 sing N N 416 VAL CG2 HG23 sing N N 417 VAL OXT HXT sing N N 418 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2JS7 _pdbx_initial_refinement_model.details 'PDB ENTRY 2JS7' #