HEADER VIRAL PROTEIN 11-FEB-12 4DOX TITLE CRYSTAL STRUCTURE OF PAPAYA MOSAIC VIRUS CAPSID PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: COAT PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PAPAYA MOSAIC VIRUS; SOURCE 3 ORGANISM_COMMON: PMV; SOURCE 4 ORGANISM_TAXID: 12181; SOURCE 5 GENE: PAPMVGP5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-3D KEYWDS ALL HELIX CAPSID PROTEIN, VIRUS CAPSID STRUCTURE, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.WANG,H.LI REVDAT 4 28-FEB-24 4DOX 1 SEQADV REVDAT 3 08-OCT-14 4DOX 1 AUTHOR REVDAT 2 02-JAN-13 4DOX 1 JRNL REVDAT 1 13-JUN-12 4DOX 0 JRNL AUTH S.YANG,T.WANG,J.BOHON,N.GAGNE,M.BOLDUC,D.LECLERC,H.LI JRNL TITL CRYSTAL STRUCTURE OF THE COAT PROTEIN OF THE FLEXIBLE JRNL TITL 2 FILAMENTOUS PAPAYA MOSAIC VIRUS. JRNL REF J.MOL.BIOL. V. 422 263 2012 JRNL REFN ISSN 0022-2836 JRNL PMID 22659319 JRNL DOI 10.1016/J.JMB.2012.05.032 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 10502 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 529 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 749 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.49 REMARK 3 BIN R VALUE (WORKING SET) : 0.2290 REMARK 3 BIN FREE R VALUE SET COUNT : 33 REMARK 3 BIN FREE R VALUE : 0.3030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2468 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 153 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.81000 REMARK 3 B22 (A**2) : 0.81000 REMARK 3 B33 (A**2) : -1.21000 REMARK 3 B12 (A**2) : 0.40000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 5.578 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.313 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.203 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.929 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.895 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2524 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3444 ; 1.710 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 326 ; 6.557 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 94 ;38.644 ;24.894 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 400 ;18.579 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;21.660 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 402 ; 0.111 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1898 ; 0.008 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1652 ; 0.944 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2680 ; 1.791 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 872 ; 2.411 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 764 ; 4.112 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 7 A 170 6 REMARK 3 1 B 7 B 170 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 1234 ; 0.320 ; 5.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 1234 ; 2.150 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 170 REMARK 3 ORIGIN FOR THE GROUP (A): -21.6420 3.8610 -6.1090 REMARK 3 T TENSOR REMARK 3 T11: 0.0824 T22: 0.1187 REMARK 3 T33: 0.1057 T12: -0.0002 REMARK 3 T13: 0.0328 T23: -0.0142 REMARK 3 L TENSOR REMARK 3 L11: 0.1889 L22: 0.8585 REMARK 3 L33: 0.9218 L12: 0.0359 REMARK 3 L13: 0.0374 L23: 0.4043 REMARK 3 S TENSOR REMARK 3 S11: -0.0468 S12: -0.0093 S13: 0.0425 REMARK 3 S21: 0.0565 S22: -0.0066 S23: 0.0447 REMARK 3 S31: 0.0817 S32: 0.0806 S33: 0.0534 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 7 B 170 REMARK 3 ORIGIN FOR THE GROUP (A): -50.9710 -0.7060 10.2000 REMARK 3 T TENSOR REMARK 3 T11: 0.0924 T22: 0.0869 REMARK 3 T33: 0.1019 T12: -0.0144 REMARK 3 T13: 0.0284 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.4162 L22: 1.3427 REMARK 3 L33: 0.9898 L12: -0.2037 REMARK 3 L13: 0.0111 L23: -0.8701 REMARK 3 S TENSOR REMARK 3 S11: -0.0276 S12: 0.0088 S13: 0.0937 REMARK 3 S21: -0.0934 S22: -0.0078 S23: -0.0540 REMARK 3 S31: 0.1450 S32: -0.1088 S33: 0.0354 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4DOX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000070600. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-11; 10-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : NSLS; NSLS REMARK 200 BEAMLINE : X25; X25 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1000; 1.0082 REMARK 200 MONOCHROMATOR : SI 111; SI 111 REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315; ADSC QUANTUM REMARK 200 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11047 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 8.500 REMARK 200 R MERGE (I) : 0.12900 REMARK 200 R SYM (I) : 0.10900 REMARK 200 FOR THE DATA SET : 16.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 7.32 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 50.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.30 REMARK 200 R MERGE FOR SHELL (I) : 0.44600 REMARK 200 R SYM FOR SHELL (I) : 0.41400 REMARK 200 FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES, 9% PEG 6000, PH 7.6, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 88.88333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 44.44167 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 66.66250 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 22.22083 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 111.10417 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LYS A 3 REMARK 465 SER A 4 REMARK 465 SER A 5 REMARK 465 MET A 6 REMARK 465 SER A 7 REMARK 465 THR A 8 REMARK 465 PRO A 9 REMARK 465 ASN A 10 REMARK 465 LYS A 175 REMARK 465 GLN A 176 REMARK 465 VAL A 177 REMARK 465 HIS A 178 REMARK 465 LEU A 179 REMARK 465 PHE A 180 REMARK 465 GLN A 181 REMARK 465 ALA A 182 REMARK 465 ALA A 183 REMARK 465 ALA A 184 REMARK 465 GLN A 185 REMARK 465 ASP A 186 REMARK 465 ASN A 187 REMARK 465 ASN A 188 REMARK 465 PHE A 189 REMARK 465 ALA A 190 REMARK 465 SER A 191 REMARK 465 ASN A 192 REMARK 465 SER A 193 REMARK 465 ALA A 194 REMARK 465 PHE A 195 REMARK 465 ILE A 196 REMARK 465 THR A 197 REMARK 465 LYS A 198 REMARK 465 GLY A 199 REMARK 465 GLN A 200 REMARK 465 ILE A 201 REMARK 465 SER A 202 REMARK 465 GLY A 203 REMARK 465 SER A 204 REMARK 465 THR A 205 REMARK 465 PRO A 206 REMARK 465 THR A 207 REMARK 465 ILE A 208 REMARK 465 GLN A 209 REMARK 465 PHE A 210 REMARK 465 LEU A 211 REMARK 465 PRO A 212 REMARK 465 PRO A 213 REMARK 465 PRO A 214 REMARK 465 GLU A 215 REMARK 465 THR A 216 REMARK 465 SER A 217 REMARK 465 THR A 218 REMARK 465 THR A 219 REMARK 465 ARG A 220 REMARK 465 HIS A 221 REMARK 465 HIS A 222 REMARK 465 HIS A 223 REMARK 465 HIS A 224 REMARK 465 HIS A 225 REMARK 465 HIS A 226 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 LYS B 3 REMARK 465 SER B 4 REMARK 465 SER B 5 REMARK 465 MET B 6 REMARK 465 SER B 7 REMARK 465 THR B 8 REMARK 465 PRO B 9 REMARK 465 ASN B 10 REMARK 465 LYS B 175 REMARK 465 GLN B 176 REMARK 465 VAL B 177 REMARK 465 HIS B 178 REMARK 465 LEU B 179 REMARK 465 PHE B 180 REMARK 465 GLN B 181 REMARK 465 ALA B 182 REMARK 465 ALA B 183 REMARK 465 ALA B 184 REMARK 465 GLN B 185 REMARK 465 ASP B 186 REMARK 465 ASN B 187 REMARK 465 ASN B 188 REMARK 465 PHE B 189 REMARK 465 ALA B 190 REMARK 465 SER B 191 REMARK 465 ASN B 192 REMARK 465 SER B 193 REMARK 465 ALA B 194 REMARK 465 PHE B 195 REMARK 465 ILE B 196 REMARK 465 THR B 197 REMARK 465 LYS B 198 REMARK 465 GLY B 199 REMARK 465 GLN B 200 REMARK 465 ILE B 201 REMARK 465 SER B 202 REMARK 465 GLY B 203 REMARK 465 SER B 204 REMARK 465 THR B 205 REMARK 465 PRO B 206 REMARK 465 THR B 207 REMARK 465 ILE B 208 REMARK 465 GLN B 209 REMARK 465 PHE B 210 REMARK 465 LEU B 211 REMARK 465 PRO B 212 REMARK 465 PRO B 213 REMARK 465 PRO B 214 REMARK 465 GLU B 215 REMARK 465 THR B 216 REMARK 465 SER B 217 REMARK 465 THR B 218 REMARK 465 THR B 219 REMARK 465 ARG B 220 REMARK 465 HIS B 221 REMARK 465 HIS B 222 REMARK 465 HIS B 223 REMARK 465 HIS B 224 REMARK 465 HIS B 225 REMARK 465 HIS B 226 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 86 CB GLU B 86 CG 0.126 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 61 CB - CG - CD2 ANGL. DEV. = -10.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 120 15.21 54.69 REMARK 500 LYS A 121 -59.88 -121.59 REMARK 500 ALA A 140 47.41 -87.22 REMARK 500 LYS B 50 16.36 84.44 REMARK 500 GLU B 86 29.32 46.45 REMARK 500 LYS B 121 -59.18 -143.55 REMARK 500 SER B 130 -176.86 -67.10 REMARK 500 ALA B 140 48.34 -87.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 131 TYR A 132 -149.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHORS STATE THAT THE SEQUENCE HAS BEEN VERIFIED AND THOSE REMARK 999 INDICATED IN REMARK 999 APPEAR TO BE NATURAL MUTATIONS DBREF 4DOX A 1 215 UNP A2IAW7 A2IAW7_PMV 1 215 DBREF 4DOX B 1 215 UNP A2IAW7 A2IAW7_PMV 1 215 SEQADV 4DOX ILE A 11 UNP A2IAW7 THR 11 SEE REMARK 999 SEQADV 4DOX THR A 160 UNP A2IAW7 ILE 160 SEE REMARK 999 SEQADV 4DOX THR A 216 UNP A2IAW7 EXPRESSION TAG SEQADV 4DOX SER A 217 UNP A2IAW7 EXPRESSION TAG SEQADV 4DOX THR A 218 UNP A2IAW7 EXPRESSION TAG SEQADV 4DOX THR A 219 UNP A2IAW7 EXPRESSION TAG SEQADV 4DOX ARG A 220 UNP A2IAW7 EXPRESSION TAG SEQADV 4DOX HIS A 221 UNP A2IAW7 EXPRESSION TAG SEQADV 4DOX HIS A 222 UNP A2IAW7 EXPRESSION TAG SEQADV 4DOX HIS A 223 UNP A2IAW7 EXPRESSION TAG SEQADV 4DOX HIS A 224 UNP A2IAW7 EXPRESSION TAG SEQADV 4DOX HIS A 225 UNP A2IAW7 EXPRESSION TAG SEQADV 4DOX HIS A 226 UNP A2IAW7 EXPRESSION TAG SEQADV 4DOX ILE B 11 UNP A2IAW7 THR 11 SEE REMARK 999 SEQADV 4DOX THR B 160 UNP A2IAW7 ILE 160 SEE REMARK 999 SEQADV 4DOX THR B 216 UNP A2IAW7 EXPRESSION TAG SEQADV 4DOX SER B 217 UNP A2IAW7 EXPRESSION TAG SEQADV 4DOX THR B 218 UNP A2IAW7 EXPRESSION TAG SEQADV 4DOX THR B 219 UNP A2IAW7 EXPRESSION TAG SEQADV 4DOX ARG B 220 UNP A2IAW7 EXPRESSION TAG SEQADV 4DOX HIS B 221 UNP A2IAW7 EXPRESSION TAG SEQADV 4DOX HIS B 222 UNP A2IAW7 EXPRESSION TAG SEQADV 4DOX HIS B 223 UNP A2IAW7 EXPRESSION TAG SEQADV 4DOX HIS B 224 UNP A2IAW7 EXPRESSION TAG SEQADV 4DOX HIS B 225 UNP A2IAW7 EXPRESSION TAG SEQADV 4DOX HIS B 226 UNP A2IAW7 EXPRESSION TAG SEQRES 1 A 226 MET SER LYS SER SER MET SER THR PRO ASN ILE ALA PHE SEQRES 2 A 226 PRO ALA ILE THR GLN GLU GLN MET SER SER ILE LYS VAL SEQRES 3 A 226 ASP PRO THR SER ASN LEU LEU PRO SER GLN GLU GLN LEU SEQRES 4 A 226 LYS SER VAL SER THR LEU MET VAL ALA ALA LYS VAL PRO SEQRES 5 A 226 ALA ALA SER VAL THR THR VAL ALA LEU GLU LEU VAL ASN SEQRES 6 A 226 PHE CYS TYR ASP ASN GLY SER SER ALA TYR THR THR VAL SEQRES 7 A 226 THR GLY PRO SER SER ILE PRO GLU ILE SER LEU ALA GLN SEQRES 8 A 226 LEU ALA SER ILE VAL LYS ALA SER GLY THR SER LEU ARG SEQRES 9 A 226 LYS PHE CYS ARG TYR PHE ALA PRO ILE ILE TRP ASN LEU SEQRES 10 A 226 ARG THR ASP LYS MET ALA PRO ALA ASN TRP GLU ALA SER SEQRES 11 A 226 GLY TYR LYS PRO SER ALA LYS PHE ALA ALA PHE ASP PHE SEQRES 12 A 226 PHE ASP GLY VAL GLU ASN PRO ALA ALA MET GLN PRO PRO SEQRES 13 A 226 SER GLY LEU THR ARG SER PRO THR GLN GLU GLU ARG ILE SEQRES 14 A 226 ALA ASN ALA THR ASN LYS GLN VAL HIS LEU PHE GLN ALA SEQRES 15 A 226 ALA ALA GLN ASP ASN ASN PHE ALA SER ASN SER ALA PHE SEQRES 16 A 226 ILE THR LYS GLY GLN ILE SER GLY SER THR PRO THR ILE SEQRES 17 A 226 GLN PHE LEU PRO PRO PRO GLU THR SER THR THR ARG HIS SEQRES 18 A 226 HIS HIS HIS HIS HIS SEQRES 1 B 226 MET SER LYS SER SER MET SER THR PRO ASN ILE ALA PHE SEQRES 2 B 226 PRO ALA ILE THR GLN GLU GLN MET SER SER ILE LYS VAL SEQRES 3 B 226 ASP PRO THR SER ASN LEU LEU PRO SER GLN GLU GLN LEU SEQRES 4 B 226 LYS SER VAL SER THR LEU MET VAL ALA ALA LYS VAL PRO SEQRES 5 B 226 ALA ALA SER VAL THR THR VAL ALA LEU GLU LEU VAL ASN SEQRES 6 B 226 PHE CYS TYR ASP ASN GLY SER SER ALA TYR THR THR VAL SEQRES 7 B 226 THR GLY PRO SER SER ILE PRO GLU ILE SER LEU ALA GLN SEQRES 8 B 226 LEU ALA SER ILE VAL LYS ALA SER GLY THR SER LEU ARG SEQRES 9 B 226 LYS PHE CYS ARG TYR PHE ALA PRO ILE ILE TRP ASN LEU SEQRES 10 B 226 ARG THR ASP LYS MET ALA PRO ALA ASN TRP GLU ALA SER SEQRES 11 B 226 GLY TYR LYS PRO SER ALA LYS PHE ALA ALA PHE ASP PHE SEQRES 12 B 226 PHE ASP GLY VAL GLU ASN PRO ALA ALA MET GLN PRO PRO SEQRES 13 B 226 SER GLY LEU THR ARG SER PRO THR GLN GLU GLU ARG ILE SEQRES 14 B 226 ALA ASN ALA THR ASN LYS GLN VAL HIS LEU PHE GLN ALA SEQRES 15 B 226 ALA ALA GLN ASP ASN ASN PHE ALA SER ASN SER ALA PHE SEQRES 16 B 226 ILE THR LYS GLY GLN ILE SER GLY SER THR PRO THR ILE SEQRES 17 B 226 GLN PHE LEU PRO PRO PRO GLU THR SER THR THR ARG HIS SEQRES 18 B 226 HIS HIS HIS HIS HIS FORMUL 3 HOH *153(H2 O) HELIX 1 1 THR A 17 ILE A 24 1 8 HELIX 2 2 SER A 35 ALA A 49 1 15 HELIX 3 3 PRO A 52 ALA A 54 5 3 HELIX 4 4 SER A 55 GLY A 71 1 17 HELIX 5 5 SER A 88 SER A 99 1 12 HELIX 6 6 SER A 102 TYR A 109 1 8 HELIX 7 7 PHE A 110 THR A 119 1 10 HELIX 8 8 LYS A 133 ALA A 140 5 8 HELIX 9 9 PHE A 143 VAL A 147 5 5 HELIX 10 10 THR A 164 THR A 173 1 10 HELIX 11 11 THR B 17 ILE B 24 1 8 HELIX 12 12 SER B 35 ALA B 49 1 15 HELIX 13 13 PRO B 52 ALA B 54 5 3 HELIX 14 14 SER B 55 GLY B 71 1 17 HELIX 15 15 SER B 88 SER B 99 1 12 HELIX 16 16 SER B 102 PHE B 110 1 9 HELIX 17 17 PHE B 110 THR B 119 1 10 HELIX 18 18 LYS B 133 ALA B 140 5 8 HELIX 19 19 PHE B 143 VAL B 147 5 5 HELIX 20 20 THR B 164 ASN B 174 1 11 CRYST1 72.943 72.943 133.325 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013709 0.007915 0.000000 0.00000 SCALE2 0.000000 0.015830 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007500 0.00000