HEADER TRANSFERASE/DNA 19-FEB-12 4DSJ TITLE CRYSTAL STRUCTURE OF FRAGMENT DNA POLYMERASE I FROM BACILLUS TITLE 2 STEAROTHERMOPHILUS WITH DUPLEX DNA, DGTP AND CALCIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 298-876; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA; COMPND 10 CHAIN: C, E; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DGTP; COMPND 14 CHAIN: D, F; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422; SOURCE 4 GENE: DPO1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 OTHER_DETAILS: SYNTHESIZED DNA; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 OTHER_DETAILS: SYNTHESIZED DGTP KEYWDS DNA POLYMERASE, POLYMERIZATION FIDELITY, CALCIUM CATION, KEYWDS 2 PYROPHOSPHOROLYSIS, PURINE SELECTIVITY, BLUNT END EXTENSION, BASE KEYWDS 3 STACKING, DNA SYNTHESIS, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.H.GAN,R.ABDUR,H.H.LIU,J.SHENG,J.CATON-WILLIANS,A.S.SOARES,Z.HUANG REVDAT 2 13-SEP-23 4DSJ 1 REMARK SEQADV LINK REVDAT 1 27-MAR-13 4DSJ 0 JRNL AUTH J.H.GAN,R.ABDUR,H.H.LIU,J.SHENG,J.CATON-WILLIANS,A.S.SOARES, JRNL AUTH 2 Z.HUANG JRNL TITL BIOCHEMICAL AND STRUCTURAL INSIGHTS INTO THE FIDELITY OF JRNL TITL 2 BACILLUS STEAROTHERMOPHILUS DNA POLYMERASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 114.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 89.8 REMARK 3 NUMBER OF REFLECTIONS : 29531 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3260 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.87 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.94 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1754 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 72.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.3310 REMARK 3 BIN FREE R VALUE SET COUNT : 182 REMARK 3 BIN FREE R VALUE : 0.3460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9266 REMARK 3 NUCLEIC ACID ATOMS : 890 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 9 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 86.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.33000 REMARK 3 B22 (A**2) : -4.73000 REMARK 3 B33 (A**2) : 5.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.507 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.403 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 43.389 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.900 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 10476 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 14353 ; 1.549 ; 2.086 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1155 ; 6.302 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 462 ;37.727 ;24.242 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1746 ;20.993 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 76 ;17.272 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1609 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7588 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5771 ; 0.442 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 9309 ; 0.860 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4705 ; 1.358 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 5042 ; 2.333 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 298 A 876 REMARK 3 ORIGIN FOR THE GROUP (A): 26.0824 15.7046 54.2098 REMARK 3 T TENSOR REMARK 3 T11: 0.2218 T22: 0.3662 REMARK 3 T33: 0.2024 T12: 0.0209 REMARK 3 T13: -0.0148 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 0.6982 L22: 1.5372 REMARK 3 L33: 0.2168 L12: 0.3039 REMARK 3 L13: 0.0434 L23: 0.0068 REMARK 3 S TENSOR REMARK 3 S11: -0.0319 S12: -0.0384 S13: 0.0001 REMARK 3 S21: -0.0812 S22: 0.0196 S23: 0.0695 REMARK 3 S31: 0.0664 S32: -0.0237 S33: 0.0123 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 298 B 876 REMARK 3 ORIGIN FOR THE GROUP (A): 48.8183 -2.7527 2.6319 REMARK 3 T TENSOR REMARK 3 T11: 0.5174 T22: 0.1700 REMARK 3 T33: 0.0190 T12: 0.0468 REMARK 3 T13: 0.0009 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 1.7152 L22: 1.8998 REMARK 3 L33: 0.9094 L12: 0.1271 REMARK 3 L13: 0.0115 L23: -0.4788 REMARK 3 S TENSOR REMARK 3 S11: 0.2048 S12: 0.0732 S13: -0.1708 REMARK 3 S21: -0.2566 S22: -0.2247 S23: -0.0659 REMARK 3 S31: 0.1690 S32: 0.1342 S33: 0.0199 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 12 REMARK 3 ORIGIN FOR THE GROUP (A): 37.6774 21.2499 42.7042 REMARK 3 T TENSOR REMARK 3 T11: 0.6447 T22: 0.5871 REMARK 3 T33: 0.3134 T12: -0.0008 REMARK 3 T13: 0.0147 T23: -0.0498 REMARK 3 L TENSOR REMARK 3 L11: 2.5206 L22: 0.5974 REMARK 3 L33: 2.4346 L12: 0.4841 REMARK 3 L13: -0.7208 L23: 0.7545 REMARK 3 S TENSOR REMARK 3 S11: -0.1851 S12: 0.3258 S13: 0.0457 REMARK 3 S21: -0.2332 S22: 0.2136 S23: -0.0061 REMARK 3 S31: 0.2884 S32: 0.1294 S33: -0.0285 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 21 D 30 REMARK 3 ORIGIN FOR THE GROUP (A): 37.1723 21.6174 43.6160 REMARK 3 T TENSOR REMARK 3 T11: 0.5433 T22: 0.5883 REMARK 3 T33: 0.3790 T12: -0.0587 REMARK 3 T13: 0.0534 T23: -0.0594 REMARK 3 L TENSOR REMARK 3 L11: 1.7421 L22: 2.5045 REMARK 3 L33: 2.3647 L12: 0.4657 REMARK 3 L13: -0.9296 L23: -2.2581 REMARK 3 S TENSOR REMARK 3 S11: 0.0398 S12: 0.1033 S13: -0.2403 REMARK 3 S21: 0.0409 S22: 0.0685 S23: -0.0067 REMARK 3 S31: -0.2722 S32: 0.0225 S33: -0.1083 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 1 E 12 REMARK 3 ORIGIN FOR THE GROUP (A): 45.4543 12.8659 10.3621 REMARK 3 T TENSOR REMARK 3 T11: 0.8333 T22: 0.7311 REMARK 3 T33: 0.6619 T12: -0.0073 REMARK 3 T13: 0.0665 T23: -0.0717 REMARK 3 L TENSOR REMARK 3 L11: 1.6710 L22: 1.9111 REMARK 3 L33: 5.0465 L12: -1.6584 REMARK 3 L13: -1.8929 L23: 2.3973 REMARK 3 S TENSOR REMARK 3 S11: 0.3392 S12: 0.2470 S13: 0.3636 REMARK 3 S21: -0.0984 S22: -0.0986 S23: -0.1388 REMARK 3 S31: 0.3538 S32: -0.6438 S33: -0.2406 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4DSJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000070727. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X12B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32948 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.860 REMARK 200 RESOLUTION RANGE LOW (A) : 114.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.3 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09100 REMARK 200 FOR THE DATA SET : 15.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.36700 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: PDB 3HT3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-BRIS (PH 6.5), 28% PEG2000, REMARK 280 VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.00800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 114.72500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.03500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 114.72500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.00800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 56.03500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS B 549 REMARK 465 THR B 550 REMARK 465 LYS B 551 REMARK 465 THR B 552 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC D 21 O3' DC D 21 C3' -0.052 REMARK 500 DA E 6 O3' DA E 6 C3' -0.042 REMARK 500 DG E 11 O3' DG E 11 C3' -0.044 REMARK 500 DC F 28 O3' DC F 28 C3' -0.036 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG C 5 O4' - C1' - N9 ANGL. DEV. = 6.3 DEGREES REMARK 500 DA C 6 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 DG C 7 C4 - C5 - N7 ANGL. DEV. = 2.5 DEGREES REMARK 500 DG C 7 C5 - N7 - C8 ANGL. DEV. = -3.5 DEGREES REMARK 500 DG C 7 N7 - C8 - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 DG C 7 C8 - N9 - C4 ANGL. DEV. = -3.2 DEGREES REMARK 500 DG C 7 C6 - C5 - N7 ANGL. DEV. = -5.4 DEGREES REMARK 500 DG C 7 N1 - C6 - O6 ANGL. DEV. = 4.1 DEGREES REMARK 500 DG C 7 C5 - C6 - O6 ANGL. DEV. = -4.0 DEGREES REMARK 500 DG C 7 C3' - O3' - P ANGL. DEV. = 14.7 DEGREES REMARK 500 DC C 9 O5' - C5' - C4' ANGL. DEV. = -5.1 DEGREES REMARK 500 DC C 9 O4' - C1' - N1 ANGL. DEV. = 3.7 DEGREES REMARK 500 DA C 10 O4' - C4' - C3' ANGL. DEV. = -3.1 DEGREES REMARK 500 DA C 10 O4' - C1' - N9 ANGL. DEV. = 3.9 DEGREES REMARK 500 DG C 11 O4' - C4' - C3' ANGL. DEV. = -5.4 DEGREES REMARK 500 DC D 21 O4' - C4' - C3' ANGL. DEV. = -4.7 DEGREES REMARK 500 DC D 21 C4' - C3' - C2' ANGL. DEV. = -4.6 DEGREES REMARK 500 DC D 21 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 DC D 22 O4' - C4' - C3' ANGL. DEV. = -3.5 DEGREES REMARK 500 DT D 23 O5' - C5' - C4' ANGL. DEV. = -5.2 DEGREES REMARK 500 DT D 23 O4' - C4' - C3' ANGL. DEV. = -3.9 DEGREES REMARK 500 DT D 23 O4' - C1' - N1 ANGL. DEV. = -4.4 DEGREES REMARK 500 DC D 26 C3' - C2' - C1' ANGL. DEV. = -5.2 DEGREES REMARK 500 DC D 26 O4' - C1' - N1 ANGL. DEV. = -6.5 DEGREES REMARK 500 DT D 27 O4' - C4' - C3' ANGL. DEV. = -3.2 DEGREES REMARK 500 DG D 29 C3' - C2' - C1' ANGL. DEV. = -5.2 DEGREES REMARK 500 DG D 29 O4' - C1' - N9 ANGL. DEV. = 8.1 DEGREES REMARK 500 DA E 1 O4' - C1' - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 DA E 1 C3' - O3' - P ANGL. DEV. = 7.7 DEGREES REMARK 500 DT E 2 O4' - C4' - C3' ANGL. DEV. = -2.7 DEGREES REMARK 500 DT E 2 C1' - O4' - C4' ANGL. DEV. = -6.2 DEGREES REMARK 500 DT E 2 O4' - C1' - N1 ANGL. DEV. = 3.8 DEGREES REMARK 500 DC E 3 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DC E 4 C3' - C2' - C1' ANGL. DEV. = -7.2 DEGREES REMARK 500 DC E 4 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG E 5 O4' - C4' - C3' ANGL. DEV. = -2.9 DEGREES REMARK 500 DG E 5 C4' - C3' - C2' ANGL. DEV. = -4.5 DEGREES REMARK 500 DG E 5 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 DG E 5 C3' - O3' - P ANGL. DEV. = 10.1 DEGREES REMARK 500 DA E 6 O4' - C4' - C3' ANGL. DEV. = -2.8 DEGREES REMARK 500 DG E 7 O4' - C1' - N9 ANGL. DEV. = 3.9 DEGREES REMARK 500 DA E 10 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 DG E 11 O4' - C4' - C3' ANGL. DEV. = -6.0 DEGREES REMARK 500 DG E 12 O4' - C4' - C3' ANGL. DEV. = -2.8 DEGREES REMARK 500 DT F 23 O4' - C4' - C3' ANGL. DEV. = -3.1 DEGREES REMARK 500 DT F 23 C4 - C5 - C7 ANGL. DEV. = 4.0 DEGREES REMARK 500 DT F 23 C6 - C5 - C7 ANGL. DEV. = -3.8 DEGREES REMARK 500 DG F 24 O5' - C5' - C4' ANGL. DEV. = -8.0 DEGREES REMARK 500 DT F 27 O4' - C4' - C3' ANGL. DEV. = -5.8 DEGREES REMARK 500 DC F 28 O5' - C5' - C4' ANGL. DEV. = -6.7 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 51 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 310 7.14 -69.97 REMARK 500 LEU A 312 41.45 -102.63 REMARK 500 ASP A 372 52.43 77.57 REMARK 500 ASP A 402 90.90 -166.25 REMARK 500 LYS A 431 -99.32 -85.34 REMARK 500 ALA A 433 7.30 -57.75 REMARK 500 LYS A 450 -76.08 -70.71 REMARK 500 ALA A 451 -44.84 -28.86 REMARK 500 GLU A 469 43.62 75.41 REMARK 500 LEU A 477 -68.91 -95.93 REMARK 500 GLU A 540 -80.97 -108.81 REMARK 500 THR A 552 -74.17 -85.48 REMARK 500 HIS A 568 139.02 176.13 REMARK 500 ILE A 588 -75.86 -143.12 REMARK 500 ASN A 625 26.95 -143.01 REMARK 500 ILE A 628 -9.73 -164.65 REMARK 500 ARG A 634 -40.90 -29.81 REMARK 500 GLU A 694 19.67 -60.71 REMARK 500 ASP A 695 -19.22 -158.32 REMARK 500 TYR A 714 38.28 -144.35 REMARK 500 PHE A 743 58.70 -149.40 REMARK 500 ILE A 796 -66.31 -95.29 REMARK 500 HIS A 829 -47.86 65.14 REMARK 500 LEU A 844 -33.97 -39.68 REMARK 500 ARG A 846 -65.46 -90.38 REMARK 500 ARG A 859 5.50 -64.25 REMARK 500 PHE B 301 -150.03 -158.58 REMARK 500 ASP B 305 -81.74 -105.97 REMARK 500 THR B 308 -170.99 -69.98 REMARK 500 LEU B 312 47.48 -97.08 REMARK 500 GLU B 349 -4.11 -57.99 REMARK 500 ASP B 372 87.03 55.41 REMARK 500 ASP B 402 93.22 -161.21 REMARK 500 LYS B 415 -48.22 -29.33 REMARK 500 GLN B 418 33.17 30.65 REMARK 500 VAL B 422 133.84 177.54 REMARK 500 LYS B 431 -113.26 -74.33 REMARK 500 ASP B 439 153.06 -39.81 REMARK 500 LEU B 477 -56.16 -138.10 REMARK 500 ILE B 537 -72.70 -82.04 REMARK 500 GLU B 540 -54.27 -138.06 REMARK 500 GLN B 543 86.12 54.61 REMARK 500 LEU B 547 6.49 -155.61 REMARK 500 THR B 556 62.53 -154.99 REMARK 500 ASP B 559 -18.59 -49.00 REMARK 500 LYS B 563 35.65 -89.94 REMARK 500 LEU B 564 -27.57 -153.41 REMARK 500 ILE B 588 -85.44 -89.75 REMARK 500 LEU B 610 -46.16 -133.63 REMARK 500 ARG B 615 -162.55 -73.49 REMARK 500 REMARK 500 THIS ENTRY HAS 67 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 831 OE2 REMARK 620 2 DG C 12 OP1 103.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1003 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DGT A1001 O2G REMARK 620 2 DGT A1001 O2B 77.2 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DGT A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1003 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3HT3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FRAGMENT DNA POLYMERASE I FROM BACILLUS REMARK 900 STEAROTHERMOPHILUS V713P MUTANT BOUND TO G:DCTP REMARK 900 RELATED ID: 4DSI RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FRAGMENT DNA POLYMERASE I FROM BACILLUS REMARK 900 STEAROTHERMOPHILUS WUTH DUPLEX DNA, SE-DGTP AND CALCIUM REMARK 900 RELATED ID: 4DSK RELATED DB: PDB REMARK 900 DNA POLYMERASE I FROM BACILLUS STEAROTHERMOPHILUS WUTH DUPLEX DNA, REMARK 900 PPI AND CALCIUM REMARK 900 RELATED ID: 4DSL RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FRAGMENT DNA POLYMERASE I FROM BACILLUS REMARK 900 STEAROTHERMOPHILUS WITH DUPLEX DNA AND CALCIUM DBREF 4DSJ A 298 876 UNP D9N168 D9N168_GEOSE 1 579 DBREF 4DSJ B 298 876 UNP D9N168 D9N168_GEOSE 1 579 DBREF 4DSJ C 1 12 PDB 4DSJ 4DSJ 1 12 DBREF 4DSJ E 1 12 PDB 4DSJ 4DSJ 1 12 DBREF 4DSJ D 21 30 PDB 4DSJ 4DSJ 21 30 DBREF 4DSJ F 21 30 PDB 4DSJ 4DSJ 21 30 SEQADV 4DSJ ASP A 598 UNP D9N168 ALA 301 ENGINEERED MUTATION SEQADV 4DSJ VAL A 713 UNP D9N168 PRO 416 ENGINEERED MUTATION SEQADV 4DSJ ASP B 598 UNP D9N168 ALA 301 ENGINEERED MUTATION SEQADV 4DSJ VAL B 713 UNP D9N168 PRO 416 ENGINEERED MUTATION SEQRES 1 A 579 LYS MET ALA PHE THR LEU ALA ASP ARG VAL THR GLU GLU SEQRES 2 A 579 MET LEU ALA ASP LYS ALA ALA LEU VAL VAL GLU VAL VAL SEQRES 3 A 579 GLU GLU ASN TYR HIS ASP ALA PRO ILE VAL GLY ILE ALA SEQRES 4 A 579 VAL VAL ASN GLU HIS GLY ARG PHE PHE LEU ARG PRO GLU SEQRES 5 A 579 THR ALA LEU ALA ASP PRO GLN PHE VAL ALA TRP LEU GLY SEQRES 6 A 579 ASP GLU THR LYS LYS LYS SER MET PHE ASP SER LYS ARG SEQRES 7 A 579 ALA ALA VAL ALA LEU LYS TRP LYS GLY ILE GLU LEU CYS SEQRES 8 A 579 GLY VAL SER PHE ASP LEU LEU LEU ALA ALA TYR LEU LEU SEQRES 9 A 579 ASP PRO ALA GLN GLY VAL ASP ASP VAL ALA ALA ALA ALA SEQRES 10 A 579 LYS MET LYS GLN TYR GLU ALA VAL ARG PRO ASP GLU ALA SEQRES 11 A 579 VAL TYR GLY LYS GLY ALA LYS ARG ALA VAL PRO ASP GLU SEQRES 12 A 579 PRO VAL LEU ALA GLU HIS LEU VAL ARG LYS ALA ALA ALA SEQRES 13 A 579 ILE TRP GLU LEU GLU ARG PRO PHE LEU ASP GLU LEU ARG SEQRES 14 A 579 ARG ASN GLU GLN ASP ARG LEU LEU VAL GLU LEU GLU GLN SEQRES 15 A 579 PRO LEU SER SER ILE LEU ALA GLU MET GLU PHE ALA GLY SEQRES 16 A 579 VAL LYS VAL ASP THR LYS ARG LEU GLU GLN MET GLY LYS SEQRES 17 A 579 GLU LEU ALA GLU GLN LEU GLY THR VAL GLU GLN ARG ILE SEQRES 18 A 579 TYR GLU LEU ALA GLY GLN GLU PHE ASN ILE ASN SER PRO SEQRES 19 A 579 LYS GLN LEU GLY VAL ILE LEU PHE GLU LYS LEU GLN LEU SEQRES 20 A 579 PRO VAL LEU LYS LYS THR LYS THR GLY TYR SER THR SER SEQRES 21 A 579 ALA ASP VAL LEU GLU LYS LEU ALA PRO TYR HIS GLU ILE SEQRES 22 A 579 VAL GLU ASN ILE LEU HIS TYR ARG GLN LEU GLY LYS LEU SEQRES 23 A 579 GLN SER THR TYR ILE GLU GLY LEU LEU LYS VAL VAL ARG SEQRES 24 A 579 PRO ASP THR LYS LYS VAL HIS THR ILE PHE ASN GLN ALA SEQRES 25 A 579 LEU THR GLN THR GLY ARG LEU SER SER THR GLU PRO ASN SEQRES 26 A 579 LEU GLN ASN ILE PRO ILE ARG LEU GLU GLU GLY ARG LYS SEQRES 27 A 579 ILE ARG GLN ALA PHE VAL PRO SER GLU SER ASP TRP LEU SEQRES 28 A 579 ILE PHE ALA ALA ASP TYR SER GLN ILE GLU LEU ARG VAL SEQRES 29 A 579 LEU ALA HIS ILE ALA GLU ASP ASP ASN LEU MET GLU ALA SEQRES 30 A 579 PHE ARG ARG ASP LEU ASP ILE HIS THR LYS THR ALA MET SEQRES 31 A 579 ASP ILE PHE GLN VAL SER GLU ASP GLU VAL THR PRO ASN SEQRES 32 A 579 MET ARG ARG GLN ALA LYS ALA VAL ASN PHE GLY ILE VAL SEQRES 33 A 579 TYR GLY ILE SER ASP TYR GLY LEU ALA GLN ASN LEU ASN SEQRES 34 A 579 ILE SER ARG LYS GLU ALA ALA GLU PHE ILE GLU ARG TYR SEQRES 35 A 579 PHE GLU SER PHE PRO GLY VAL LYS ARG TYR MET GLU ASN SEQRES 36 A 579 ILE VAL GLN GLU ALA LYS GLN LYS GLY TYR VAL THR THR SEQRES 37 A 579 LEU LEU HIS ARG ARG ARG TYR LEU PRO ASP ILE THR SER SEQRES 38 A 579 ARG ASN PHE ASN VAL ARG SER PHE ALA GLU ARG MET ALA SEQRES 39 A 579 MET ASN THR PRO ILE GLN GLY SER ALA ALA ASP ILE ILE SEQRES 40 A 579 LYS LYS ALA MET ILE ASP LEU ASN ALA ARG LEU LYS GLU SEQRES 41 A 579 GLU ARG LEU GLN ALA HIS LEU LEU LEU GLN VAL HIS ASP SEQRES 42 A 579 GLU LEU ILE LEU GLU ALA PRO LYS GLU GLU MET GLU ARG SEQRES 43 A 579 LEU CYS ARG LEU VAL PRO GLU VAL MET GLU GLN ALA VAL SEQRES 44 A 579 THR LEU ARG VAL PRO LEU LYS VAL ASP TYR HIS TYR GLY SEQRES 45 A 579 SER THR TRP TYR ASP ALA LYS SEQRES 1 B 579 LYS MET ALA PHE THR LEU ALA ASP ARG VAL THR GLU GLU SEQRES 2 B 579 MET LEU ALA ASP LYS ALA ALA LEU VAL VAL GLU VAL VAL SEQRES 3 B 579 GLU GLU ASN TYR HIS ASP ALA PRO ILE VAL GLY ILE ALA SEQRES 4 B 579 VAL VAL ASN GLU HIS GLY ARG PHE PHE LEU ARG PRO GLU SEQRES 5 B 579 THR ALA LEU ALA ASP PRO GLN PHE VAL ALA TRP LEU GLY SEQRES 6 B 579 ASP GLU THR LYS LYS LYS SER MET PHE ASP SER LYS ARG SEQRES 7 B 579 ALA ALA VAL ALA LEU LYS TRP LYS GLY ILE GLU LEU CYS SEQRES 8 B 579 GLY VAL SER PHE ASP LEU LEU LEU ALA ALA TYR LEU LEU SEQRES 9 B 579 ASP PRO ALA GLN GLY VAL ASP ASP VAL ALA ALA ALA ALA SEQRES 10 B 579 LYS MET LYS GLN TYR GLU ALA VAL ARG PRO ASP GLU ALA SEQRES 11 B 579 VAL TYR GLY LYS GLY ALA LYS ARG ALA VAL PRO ASP GLU SEQRES 12 B 579 PRO VAL LEU ALA GLU HIS LEU VAL ARG LYS ALA ALA ALA SEQRES 13 B 579 ILE TRP GLU LEU GLU ARG PRO PHE LEU ASP GLU LEU ARG SEQRES 14 B 579 ARG ASN GLU GLN ASP ARG LEU LEU VAL GLU LEU GLU GLN SEQRES 15 B 579 PRO LEU SER SER ILE LEU ALA GLU MET GLU PHE ALA GLY SEQRES 16 B 579 VAL LYS VAL ASP THR LYS ARG LEU GLU GLN MET GLY LYS SEQRES 17 B 579 GLU LEU ALA GLU GLN LEU GLY THR VAL GLU GLN ARG ILE SEQRES 18 B 579 TYR GLU LEU ALA GLY GLN GLU PHE ASN ILE ASN SER PRO SEQRES 19 B 579 LYS GLN LEU GLY VAL ILE LEU PHE GLU LYS LEU GLN LEU SEQRES 20 B 579 PRO VAL LEU LYS LYS THR LYS THR GLY TYR SER THR SER SEQRES 21 B 579 ALA ASP VAL LEU GLU LYS LEU ALA PRO TYR HIS GLU ILE SEQRES 22 B 579 VAL GLU ASN ILE LEU HIS TYR ARG GLN LEU GLY LYS LEU SEQRES 23 B 579 GLN SER THR TYR ILE GLU GLY LEU LEU LYS VAL VAL ARG SEQRES 24 B 579 PRO ASP THR LYS LYS VAL HIS THR ILE PHE ASN GLN ALA SEQRES 25 B 579 LEU THR GLN THR GLY ARG LEU SER SER THR GLU PRO ASN SEQRES 26 B 579 LEU GLN ASN ILE PRO ILE ARG LEU GLU GLU GLY ARG LYS SEQRES 27 B 579 ILE ARG GLN ALA PHE VAL PRO SER GLU SER ASP TRP LEU SEQRES 28 B 579 ILE PHE ALA ALA ASP TYR SER GLN ILE GLU LEU ARG VAL SEQRES 29 B 579 LEU ALA HIS ILE ALA GLU ASP ASP ASN LEU MET GLU ALA SEQRES 30 B 579 PHE ARG ARG ASP LEU ASP ILE HIS THR LYS THR ALA MET SEQRES 31 B 579 ASP ILE PHE GLN VAL SER GLU ASP GLU VAL THR PRO ASN SEQRES 32 B 579 MET ARG ARG GLN ALA LYS ALA VAL ASN PHE GLY ILE VAL SEQRES 33 B 579 TYR GLY ILE SER ASP TYR GLY LEU ALA GLN ASN LEU ASN SEQRES 34 B 579 ILE SER ARG LYS GLU ALA ALA GLU PHE ILE GLU ARG TYR SEQRES 35 B 579 PHE GLU SER PHE PRO GLY VAL LYS ARG TYR MET GLU ASN SEQRES 36 B 579 ILE VAL GLN GLU ALA LYS GLN LYS GLY TYR VAL THR THR SEQRES 37 B 579 LEU LEU HIS ARG ARG ARG TYR LEU PRO ASP ILE THR SER SEQRES 38 B 579 ARG ASN PHE ASN VAL ARG SER PHE ALA GLU ARG MET ALA SEQRES 39 B 579 MET ASN THR PRO ILE GLN GLY SER ALA ALA ASP ILE ILE SEQRES 40 B 579 LYS LYS ALA MET ILE ASP LEU ASN ALA ARG LEU LYS GLU SEQRES 41 B 579 GLU ARG LEU GLN ALA HIS LEU LEU LEU GLN VAL HIS ASP SEQRES 42 B 579 GLU LEU ILE LEU GLU ALA PRO LYS GLU GLU MET GLU ARG SEQRES 43 B 579 LEU CYS ARG LEU VAL PRO GLU VAL MET GLU GLN ALA VAL SEQRES 44 B 579 THR LEU ARG VAL PRO LEU LYS VAL ASP TYR HIS TYR GLY SEQRES 45 B 579 SER THR TRP TYR ASP ALA LYS SEQRES 1 C 12 DA DT DC DC DG DA DG DT DC DA DG DG SEQRES 1 D 10 DC DC DT DG DA DC DT DC DG DG SEQRES 1 E 12 DA DT DC DC DG DA DG DT DC DA DG DG SEQRES 1 F 10 DC DC DT DG DA DC DT DC DG DG HET DGT A1001 31 HET CA A1002 1 HET CA A1003 1 HETNAM DGT 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE HETNAM CA CALCIUM ION FORMUL 7 DGT C10 H16 N5 O13 P3 FORMUL 8 CA 2(CA 2+) FORMUL 10 HOH *9(H2 O) HELIX 1 1 THR A 308 LEU A 312 5 5 HELIX 2 2 ARG A 347 ASP A 354 1 8 HELIX 3 3 ASP A 354 ASP A 363 1 10 HELIX 4 4 ASP A 372 LYS A 383 1 12 HELIX 5 5 LEU A 394 ASP A 402 1 9 HELIX 6 6 PRO A 403 GLY A 406 5 4 HELIX 7 7 ASP A 409 LYS A 417 1 9 HELIX 8 8 PRO A 424 TYR A 429 1 6 HELIX 9 9 ASP A 439 GLU A 469 1 31 HELIX 10 10 GLN A 470 VAL A 475 1 6 HELIX 11 11 LEU A 477 GLY A 492 1 16 HELIX 12 12 ASP A 496 GLY A 523 1 28 HELIX 13 13 SER A 530 GLU A 540 1 11 HELIX 14 14 SER A 557 ALA A 565 1 9 HELIX 15 15 PRO A 566 HIS A 568 5 3 HELIX 16 16 GLU A 569 ILE A 588 1 20 HELIX 17 17 ILE A 588 LYS A 593 1 6 HELIX 18 18 ASN A 622 ILE A 626 5 5 HELIX 19 19 LEU A 630 LYS A 635 1 6 HELIX 20 20 ILE A 636 GLN A 638 5 3 HELIX 21 21 GLN A 656 GLU A 667 1 12 HELIX 22 22 ASP A 668 ARG A 677 1 10 HELIX 23 23 ASP A 680 GLN A 691 1 12 HELIX 24 24 PRO A 699 ILE A 712 1 14 HELIX 25 25 VAL A 713 GLY A 715 5 3 HELIX 26 26 SER A 717 ASN A 726 1 10 HELIX 27 27 SER A 728 PHE A 743 1 16 HELIX 28 28 PHE A 743 GLY A 761 1 19 HELIX 29 29 PRO A 774 SER A 778 5 5 HELIX 30 30 ASN A 780 GLU A 818 1 39 HELIX 31 31 GLU A 840 GLN A 854 1 15 HELIX 32 32 THR A 871 ALA A 875 5 5 HELIX 33 33 ARG B 347 LEU B 352 1 6 HELIX 34 34 ASP B 354 ASP B 363 1 10 HELIX 35 35 SER B 373 GLY B 384 1 12 HELIX 36 36 LEU B 394 ASP B 402 1 9 HELIX 37 37 PRO B 403 GLY B 406 5 4 HELIX 38 38 ASP B 409 MET B 416 1 8 HELIX 39 39 ASP B 425 GLY B 430 1 6 HELIX 40 40 ASP B 439 GLU B 458 1 20 HELIX 41 41 ARG B 459 ASN B 468 1 10 HELIX 42 42 GLN B 470 GLU B 476 1 7 HELIX 43 43 LEU B 477 GLY B 492 1 16 HELIX 44 44 ASP B 496 ALA B 522 1 27 HELIX 45 45 SER B 530 GLY B 535 1 6 HELIX 46 46 SER B 557 GLU B 562 1 6 HELIX 47 47 GLU B 569 TYR B 587 1 19 HELIX 48 48 ILE B 588 VAL B 594 1 7 HELIX 49 49 GLY B 633 GLN B 638 5 6 HELIX 50 50 GLN B 656 GLU B 667 1 12 HELIX 51 51 ASP B 668 ARG B 677 1 10 HELIX 52 52 ASP B 680 THR B 685 1 6 HELIX 53 53 THR B 685 PHE B 690 1 6 HELIX 54 54 THR B 698 TYR B 714 1 17 HELIX 55 55 SER B 717 LEU B 725 1 9 HELIX 56 56 SER B 728 GLU B 741 1 14 HELIX 57 57 PHE B 743 ARG B 748 1 6 HELIX 58 58 ARG B 748 GLY B 761 1 14 HELIX 59 59 ASN B 780 ALA B 813 1 34 HELIX 60 60 GLU B 839 ALA B 855 1 17 SHEET 1 A 6 THR A 302 LEU A 303 0 SHEET 2 A 6 GLY A 342 LEU A 346 1 O ARG A 343 N THR A 302 SHEET 3 A 6 ILE A 335 ASN A 339 -1 N VAL A 337 O PHE A 344 SHEET 4 A 6 LYS A 315 VAL A 320 -1 N VAL A 319 O ALA A 336 SHEET 5 A 6 LYS A 367 MET A 370 1 O SER A 369 N LEU A 318 SHEET 6 A 6 VAL A 390 ASP A 393 1 O SER A 391 N LYS A 368 SHEET 1 B 3 LYS A 601 VAL A 602 0 SHEET 2 B 3 VAL A 493 VAL A 495 -1 N VAL A 493 O VAL A 602 SHEET 3 B 3 PHE A 640 VAL A 641 -1 O VAL A 641 N LYS A 494 SHEET 1 C 2 ILE A 605 ASN A 607 0 SHEET 2 C 2 SER A 617 THR A 619 -1 O THR A 619 N ILE A 605 SHEET 1 D 4 HIS A 823 GLN A 827 0 SHEET 2 D 4 GLU A 831 PRO A 837 -1 O ILE A 833 N LEU A 825 SHEET 3 D 4 TRP A 647 SER A 655 -1 N PHE A 650 O LEU A 834 SHEET 4 D 4 LYS A 863 GLY A 869 -1 O LYS A 863 N SER A 655 SHEET 1 E 2 TYR A 762 THR A 764 0 SHEET 2 E 2 ARG A 770 TYR A 772 -1 O ARG A 771 N VAL A 763 SHEET 1 F 6 THR B 302 LEU B 303 0 SHEET 2 F 6 GLY B 342 LEU B 346 1 O PHE B 345 N THR B 302 SHEET 3 F 6 ILE B 332 ASN B 339 -1 N VAL B 337 O PHE B 344 SHEET 4 F 6 LYS B 315 VAL B 322 -1 N VAL B 319 O ALA B 336 SHEET 5 F 6 LYS B 367 MET B 370 1 O SER B 369 N ALA B 316 SHEET 6 F 6 VAL B 390 ASP B 393 1 O PHE B 392 N MET B 370 SHEET 1 G 3 LYS B 601 VAL B 602 0 SHEET 2 G 3 VAL B 493 VAL B 495 -1 N VAL B 493 O VAL B 602 SHEET 3 G 3 PHE B 640 VAL B 641 -1 O VAL B 641 N LYS B 494 SHEET 1 H 2 ILE B 605 ASN B 607 0 SHEET 2 H 2 SER B 617 THR B 619 -1 O THR B 619 N ILE B 605 SHEET 1 I 4 HIS B 823 GLN B 827 0 SHEET 2 I 4 GLU B 831 PRO B 837 -1 O ILE B 833 N LEU B 825 SHEET 3 I 4 TRP B 647 TYR B 654 -1 N PHE B 650 O LEU B 834 SHEET 4 I 4 VAL B 864 GLY B 869 -1 O ASP B 865 N ASP B 653 SHEET 1 J 2 TYR B 762 THR B 764 0 SHEET 2 J 2 ARG B 770 TYR B 772 -1 O ARG B 771 N VAL B 763 LINK OE2 GLU A 831 CA CA A1002 1555 1555 2.76 LINK O2G DGT A1001 CA CA A1003 1555 1555 2.26 LINK O2B DGT A1001 CA CA A1003 1555 1555 2.42 LINK CA CA A1002 OP1 DG C 12 1555 1555 2.85 CISPEP 1 GLU A 620 PRO A 621 0 -0.68 CISPEP 2 GLU B 620 PRO B 621 0 -2.47 SITE 1 AC1 9 ARG A 629 GLN A 656 ARG A 702 LYS A 706 SITE 2 AC1 9 PHE A 710 ASP A 830 CA A1002 CA A1003 SITE 3 AC1 9 DG C 12 SITE 1 AC2 4 ASP A 830 GLU A 831 DGT A1001 DG C 12 SITE 1 AC3 1 DGT A1001 CRYST1 60.016 112.070 229.450 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016662 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008923 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004358 0.00000