data_4DUT # _entry.id 4DUT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4DUT pdb_00004dut 10.2210/pdb4dut/pdb RCSB RCSB070809 ? ? WWPDB D_1000070809 ? ? # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id SSGCID-ButhA.00438.a _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 4DUT _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-02-22 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Seattle Structural Genomics Center for Infectious Disease (SSGCID)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Combining functional and structural genomics to sample the essential Burkholderia structome.' _citation.journal_abbrev 'Plos One' _citation.journal_volume 8 _citation.page_first e53851 _citation.page_last e53851 _citation.year 2013 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1932-6203 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23382856 _citation.pdbx_database_id_DOI 10.1371/journal.pone.0053851 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Baugh, L.' 1 ? primary 'Gallagher, L.A.' 2 ? primary 'Patrapuvich, R.' 3 ? primary 'Clifton, M.C.' 4 ? primary 'Gardberg, A.S.' 5 ? primary 'Edwards, T.E.' 6 ? primary 'Armour, B.' 7 ? primary 'Begley, D.W.' 8 ? primary 'Dieterich, S.H.' 9 ? primary 'Dranow, D.M.' 10 ? primary 'Abendroth, J.' 11 ? primary 'Fairman, J.W.' 12 ? primary 'Fox, D.' 13 ? primary 'Staker, B.L.' 14 ? primary 'Phan, I.' 15 ? primary 'Gillespie, A.' 16 ? primary 'Choi, R.' 17 ? primary 'Nakazawa-Hewitt, S.' 18 ? primary 'Nguyen, M.T.' 19 ? primary 'Napuli, A.' 20 ? primary 'Barrett, L.' 21 ? primary 'Buchko, G.W.' 22 ? primary 'Stacy, R.' 23 ? primary 'Myler, P.J.' 24 ? primary 'Stewart, L.J.' 25 ? primary 'Manoil, C.' 26 ? primary 'Van Voorhis, W.C.' 27 ? # _cell.length_a 80.720 _cell.length_b 80.720 _cell.length_c 112.960 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 4DUT _cell.pdbx_unique_axis ? _cell.Z_PDB 16 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.entry_id 4DUT _symmetry.Int_Tables_number 92 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Nucleoside diphosphate kinase' 15937.228 2 2.7.4.6 ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 4 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 4 water nat water 18.015 57 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'NDK, NDP kinase, Nucleoside-2-P kinase' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GPGSMALERTLSIIKPDAVAKNVIGQIYSRFENAGLKIVAARMAHLSRADAEKFYAVHAERPFFKDLVEFMISGPVMIQV LEGEDAILKNRDLMGATDPKKAEKGTIRADFADSIDANAVHGSDAPETARVEIAFFFPEMNVYSR ; _entity_poly.pdbx_seq_one_letter_code_can ;GPGSMALERTLSIIKPDAVAKNVIGQIYSRFENAGLKIVAARMAHLSRADAEKFYAVHAERPFFKDLVEFMISGPVMIQV LEGEDAILKNRDLMGATDPKKAEKGTIRADFADSIDANAVHGSDAPETARVEIAFFFPEMNVYSR ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier SSGCID-ButhA.00438.a # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 GLY n 1 4 SER n 1 5 MET n 1 6 ALA n 1 7 LEU n 1 8 GLU n 1 9 ARG n 1 10 THR n 1 11 LEU n 1 12 SER n 1 13 ILE n 1 14 ILE n 1 15 LYS n 1 16 PRO n 1 17 ASP n 1 18 ALA n 1 19 VAL n 1 20 ALA n 1 21 LYS n 1 22 ASN n 1 23 VAL n 1 24 ILE n 1 25 GLY n 1 26 GLN n 1 27 ILE n 1 28 TYR n 1 29 SER n 1 30 ARG n 1 31 PHE n 1 32 GLU n 1 33 ASN n 1 34 ALA n 1 35 GLY n 1 36 LEU n 1 37 LYS n 1 38 ILE n 1 39 VAL n 1 40 ALA n 1 41 ALA n 1 42 ARG n 1 43 MET n 1 44 ALA n 1 45 HIS n 1 46 LEU n 1 47 SER n 1 48 ARG n 1 49 ALA n 1 50 ASP n 1 51 ALA n 1 52 GLU n 1 53 LYS n 1 54 PHE n 1 55 TYR n 1 56 ALA n 1 57 VAL n 1 58 HIS n 1 59 ALA n 1 60 GLU n 1 61 ARG n 1 62 PRO n 1 63 PHE n 1 64 PHE n 1 65 LYS n 1 66 ASP n 1 67 LEU n 1 68 VAL n 1 69 GLU n 1 70 PHE n 1 71 MET n 1 72 ILE n 1 73 SER n 1 74 GLY n 1 75 PRO n 1 76 VAL n 1 77 MET n 1 78 ILE n 1 79 GLN n 1 80 VAL n 1 81 LEU n 1 82 GLU n 1 83 GLY n 1 84 GLU n 1 85 ASP n 1 86 ALA n 1 87 ILE n 1 88 LEU n 1 89 LYS n 1 90 ASN n 1 91 ARG n 1 92 ASP n 1 93 LEU n 1 94 MET n 1 95 GLY n 1 96 ALA n 1 97 THR n 1 98 ASP n 1 99 PRO n 1 100 LYS n 1 101 LYS n 1 102 ALA n 1 103 GLU n 1 104 LYS n 1 105 GLY n 1 106 THR n 1 107 ILE n 1 108 ARG n 1 109 ALA n 1 110 ASP n 1 111 PHE n 1 112 ALA n 1 113 ASP n 1 114 SER n 1 115 ILE n 1 116 ASP n 1 117 ALA n 1 118 ASN n 1 119 ALA n 1 120 VAL n 1 121 HIS n 1 122 GLY n 1 123 SER n 1 124 ASP n 1 125 ALA n 1 126 PRO n 1 127 GLU n 1 128 THR n 1 129 ALA n 1 130 ARG n 1 131 VAL n 1 132 GLU n 1 133 ILE n 1 134 ALA n 1 135 PHE n 1 136 PHE n 1 137 PHE n 1 138 PRO n 1 139 GLU n 1 140 MET n 1 141 ASN n 1 142 VAL n 1 143 TYR n 1 144 SER n 1 145 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'ndk, BTH_I2231' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'E264 / ATCC 700388 / DSM 13276 / CIP 106301' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Burkholderia thailandensis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 271848 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code NDK_BURTA _struct_ref.pdbx_db_accession Q2SWE7 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MALERTLSIIKPDAVAKNVIGQIYSRFENAGLKIVAARMAHLSRADAEKFYAVHAERPFFKDLVEFMISGPVMIQVLEGE DAILKNRDLMGATDPKKAEKGTIRADFADSIDANAVHGSDAPETARVEIAFFFPEMNVYSR ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4DUT A 5 ? 145 ? Q2SWE7 1 ? 141 ? 1 141 2 1 4DUT B 5 ? 145 ? Q2SWE7 1 ? 141 ? 1 141 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4DUT GLY A 1 ? UNP Q2SWE7 ? ? 'expression tag' -3 1 1 4DUT PRO A 2 ? UNP Q2SWE7 ? ? 'expression tag' -2 2 1 4DUT GLY A 3 ? UNP Q2SWE7 ? ? 'expression tag' -1 3 1 4DUT SER A 4 ? UNP Q2SWE7 ? ? 'expression tag' 0 4 2 4DUT GLY B 1 ? UNP Q2SWE7 ? ? 'expression tag' -3 5 2 4DUT PRO B 2 ? UNP Q2SWE7 ? ? 'expression tag' -2 6 2 4DUT GLY B 3 ? UNP Q2SWE7 ? ? 'expression tag' -1 7 2 4DUT SER B 4 ? UNP Q2SWE7 ? ? 'expression tag' 0 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4DUT _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.89 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 57.39 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7 _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details ;ButhA.00438.a.A1 PS01186 at 42.64 mg/mL, 1.5 M ammonium sulfate, 0.1 M Bis-Tris propane, pH 7.0, cryoprotectant: 15% ethylene glycol, VAPOR DIFFUSION, SITTING DROP, temperature 289K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RIGAKU SATURN 944' _diffrn_detector.pdbx_collection_date 2012-01-19 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU FR-E+ SUPERBRIGHT' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 4DUT _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 2.500 _reflns.d_resolution_low 38.007 _reflns.number_all 13496 _reflns.number_obs 13496 _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs 0.097 _reflns.pdbx_Rsym_value 0.067 _reflns.pdbx_netI_over_sigmaI 25.98 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.500 2.570 6849 ? 968 0.525 4.130 ? ? ? ? ? 99.8 1 1 2.570 2.640 6787 ? 958 0.408 5.150 ? ? ? ? ? 99.6 2 1 2.640 2.710 6515 ? 914 0.326 6.260 ? ? ? ? ? 99.7 3 1 2.710 2.800 6459 ? 904 0.276 7.050 ? ? ? ? ? 99.9 4 1 2.800 2.890 6217 ? 878 0.224 8.390 ? ? ? ? ? 99.8 5 1 2.890 2.990 5976 ? 837 0.169 11.000 ? ? ? ? ? 99.6 6 1 2.990 3.100 5899 ? 823 0.137 13.090 ? ? ? ? ? 99.8 7 1 3.100 3.230 5656 ? 798 0.102 17.200 ? ? ? ? ? 99.8 8 1 3.230 3.370 5357 ? 750 0.078 22.170 ? ? ? ? ? 99.7 9 1 3.370 3.540 5184 ? 730 0.063 28.970 ? ? ? ? ? 99.7 10 1 3.540 3.730 4856 ? 688 0.056 34.100 ? ? ? ? ? 99.3 11 1 3.730 3.950 4635 ? 662 0.043 41.420 ? ? ? ? ? 99.1 12 1 3.950 4.230 4397 ? 627 0.033 50.530 ? ? ? ? ? 99.2 13 1 4.230 4.560 3903 ? 574 0.031 58.390 ? ? ? ? ? 99.5 14 1 4.560 5.000 3790 ? 544 0.028 56.120 ? ? ? ? ? 99.6 15 1 5.000 5.590 3426 ? 499 0.035 45.640 ? ? ? ? ? 99.8 16 1 5.590 6.460 3006 ? 447 0.033 48.790 ? ? ? ? ? 100.0 17 1 6.460 7.910 2579 ? 388 0.024 56.270 ? ? ? ? ? 100.0 18 1 7.910 11.180 1955 ? 313 0.016 76.280 ? ? ? ? ? 100.0 19 1 11.180 ? 973 ? 192 0.016 71.860 ? ? ? ? ? 93.7 20 1 # _refine.entry_id 4DUT _refine.ls_d_res_high 2.500 _refine.ls_d_res_low 38.007 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.59 _refine.ls_number_reflns_obs 13447 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : WITH TLS ADDED ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2138 _refine.ls_R_factor_R_work 0.2111 _refine.ls_wR_factor_R_work 0.1782 _refine.ls_R_factor_R_free 0.2635 _refine.ls_wR_factor_R_free 0.2205 _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 675 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 37.2923 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.3100 _refine.aniso_B[2][2] -0.3100 _refine.aniso_B[3][3] 0.6200 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9370 _refine.correlation_coeff_Fo_to_Fc_free 0.8930 _refine.overall_SU_R_Cruickshank_DPI 0.3695 _refine.overall_SU_R_free 0.2713 _refine.pdbx_overall_ESU_R 0.3700 _refine.pdbx_overall_ESU_R_Free 0.2710 _refine.overall_SU_ML 0.1860 _refine.overall_SU_B 16.4480 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB ENTRY 3PJ9' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.8038 _refine.B_iso_max 92.630 _refine.B_iso_min 11.810 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2010 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 21 _refine_hist.number_atoms_solvent 57 _refine_hist.number_atoms_total 2088 _refine_hist.d_res_high 2.500 _refine_hist.d_res_low 38.007 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 2059 0.010 0.019 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 1336 0.003 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2794 1.371 1.964 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 3249 0.947 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 268 5.799 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 90 35.960 23.889 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 314 16.818 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 15 13.066 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 321 0.078 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 2346 0.005 0.021 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 421 0.001 0.020 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 2.500 _refine_ls_shell.d_res_low 2.565 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.65 _refine_ls_shell.number_reflns_R_work 800 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2880 _refine_ls_shell.R_factor_R_free 0.3740 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 46 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 846 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4DUT _struct.title 'The structure of nucleoside diphosphate kinase (NDK) from Burkholderia thailandensis' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4DUT _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text ;SSGCID, Seattle Structural Genomics Center for Infectious Disease, NIAID, National Institute of Allergy and Infectious Diseases, TRANSFERASE ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 4 ? I N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 15 ? LYS A 21 ? LYS A 11 LYS A 17 1 ? 7 HELX_P HELX_P2 2 VAL A 23 ? ALA A 34 ? VAL A 19 ALA A 30 1 ? 12 HELX_P HELX_P3 3 SER A 47 ? TYR A 55 ? SER A 43 TYR A 51 1 ? 9 HELX_P HELX_P4 4 ALA A 56 ? ALA A 59 ? ALA A 52 ALA A 55 5 ? 4 HELX_P HELX_P5 5 PHE A 63 ? SER A 73 ? PHE A 59 SER A 69 1 ? 11 HELX_P HELX_P6 6 ASP A 85 ? GLY A 95 ? ASP A 81 GLY A 91 1 ? 11 HELX_P HELX_P7 7 THR A 106 ? ALA A 112 ? THR A 102 ALA A 108 1 ? 7 HELX_P HELX_P8 8 ALA A 125 ? PHE A 137 ? ALA A 121 PHE A 133 1 ? 13 HELX_P HELX_P9 9 PRO A 138 ? VAL A 142 ? PRO A 134 VAL A 138 5 ? 5 HELX_P HELX_P10 10 LYS B 15 ? LYS B 21 ? LYS B 11 LYS B 17 1 ? 7 HELX_P HELX_P11 11 VAL B 23 ? ALA B 34 ? VAL B 19 ALA B 30 1 ? 12 HELX_P HELX_P12 12 SER B 47 ? TYR B 55 ? SER B 43 TYR B 51 1 ? 9 HELX_P HELX_P13 13 ASP B 66 ? ILE B 72 ? ASP B 62 ILE B 68 1 ? 7 HELX_P HELX_P14 14 ASP B 85 ? GLY B 95 ? ASP B 81 GLY B 91 1 ? 11 HELX_P HELX_P15 15 THR B 106 ? ALA B 112 ? THR B 102 ALA B 108 1 ? 7 HELX_P HELX_P16 16 ALA B 125 ? PHE B 137 ? ALA B 121 PHE B 133 1 ? 13 HELX_P HELX_P17 17 PRO B 138 ? VAL B 142 ? PRO B 134 VAL B 138 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 37 ? ALA A 44 ? LYS A 33 ALA A 40 A 2 VAL A 76 ? GLU A 84 ? VAL A 72 GLU A 80 A 3 LEU A 7 ? ILE A 14 ? LEU A 3 ILE A 10 A 4 VAL A 120 ? GLY A 122 ? VAL A 116 GLY A 118 B 1 LYS B 37 ? ALA B 44 ? LYS B 33 ALA B 40 B 2 VAL B 76 ? GLY B 83 ? VAL B 72 GLY B 79 B 3 GLU B 8 ? ILE B 14 ? GLU B 4 ILE B 10 B 4 VAL B 120 ? GLY B 122 ? VAL B 116 GLY B 118 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ARG A 42 ? N ARG A 38 O ILE A 78 ? O ILE A 74 A 2 3 O GLN A 79 ? O GLN A 75 N SER A 12 ? N SER A 8 A 3 4 N ILE A 13 ? N ILE A 9 O HIS A 121 ? O HIS A 117 B 1 2 N ARG B 42 ? N ARG B 38 O ILE B 78 ? O ILE B 74 B 2 3 O MET B 77 ? O MET B 73 N ILE B 14 ? N ILE B 10 B 3 4 N ILE B 13 ? N ILE B 9 O HIS B 121 ? O HIS B 117 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 201 ? 6 'BINDING SITE FOR RESIDUE SO4 A 201' AC2 Software A CL 202 ? 1 'BINDING SITE FOR RESIDUE CL A 202' AC3 Software B SO4 201 ? 7 'BINDING SITE FOR RESIDUE SO4 B 201' AC4 Software B SO4 202 ? 5 'BINDING SITE FOR RESIDUE SO4 B 202' AC5 Software B SO4 203 ? 3 'BINDING SITE FOR RESIDUE SO4 B 203' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 LYS A 15 ? LYS A 11 . ? 1_555 ? 2 AC1 6 TYR A 55 ? TYR A 51 . ? 1_555 ? 3 AC1 6 ARG A 108 ? ARG A 104 . ? 1_555 ? 4 AC1 6 ASN A 118 ? ASN A 114 . ? 1_555 ? 5 AC1 6 HIS A 121 ? HIS A 117 . ? 1_555 ? 6 AC1 6 HOH H . ? HOH A 319 . ? 1_555 ? 7 AC2 1 ARG A 48 ? ARG A 44 . ? 1_555 ? 8 AC3 7 LYS B 15 ? LYS B 11 . ? 1_555 ? 9 AC3 7 TYR B 55 ? TYR B 51 . ? 1_555 ? 10 AC3 7 ARG B 108 ? ARG B 104 . ? 1_555 ? 11 AC3 7 ASN B 118 ? ASN B 114 . ? 1_555 ? 12 AC3 7 VAL B 120 ? VAL B 116 . ? 1_555 ? 13 AC3 7 HIS B 121 ? HIS B 117 . ? 1_555 ? 14 AC3 7 HOH I . ? HOH B 307 . ? 1_555 ? 15 AC4 5 ARG A 42 ? ARG A 38 . ? 3_545 ? 16 AC4 5 ASN A 141 ? ASN A 137 . ? 5_545 ? 17 AC4 5 ARG B 42 ? ARG B 38 . ? 1_555 ? 18 AC4 5 ASN B 141 ? ASN B 137 . ? 8_555 ? 19 AC4 5 HOH I . ? HOH B 304 . ? 1_555 ? 20 AC5 3 HIS A 45 ? HIS A 41 . ? 3_545 ? 21 AC5 3 TYR A 143 ? TYR A 139 . ? 5_545 ? 22 AC5 3 LYS B 53 ? LYS B 49 . ? 1_555 ? # _atom_sites.entry_id 4DUT _atom_sites.fract_transf_matrix[1][1] 0.012389 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012389 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008853 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CL N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -3 ? ? ? A . n A 1 2 PRO 2 -2 ? ? ? A . n A 1 3 GLY 3 -1 ? ? ? A . n A 1 4 SER 4 0 ? ? ? A . n A 1 5 MET 5 1 ? ? ? A . n A 1 6 ALA 6 2 2 ALA ALA A . n A 1 7 LEU 7 3 3 LEU LEU A . n A 1 8 GLU 8 4 4 GLU GLU A . n A 1 9 ARG 9 5 5 ARG ARG A . n A 1 10 THR 10 6 6 THR THR A . n A 1 11 LEU 11 7 7 LEU LEU A . n A 1 12 SER 12 8 8 SER SER A . n A 1 13 ILE 13 9 9 ILE ILE A . n A 1 14 ILE 14 10 10 ILE ILE A . n A 1 15 LYS 15 11 11 LYS LYS A . n A 1 16 PRO 16 12 12 PRO PRO A . n A 1 17 ASP 17 13 13 ASP ASP A . n A 1 18 ALA 18 14 14 ALA ALA A . n A 1 19 VAL 19 15 15 VAL VAL A . n A 1 20 ALA 20 16 16 ALA ALA A . n A 1 21 LYS 21 17 17 LYS LYS A . n A 1 22 ASN 22 18 18 ASN ASN A . n A 1 23 VAL 23 19 19 VAL VAL A . n A 1 24 ILE 24 20 20 ILE ILE A . n A 1 25 GLY 25 21 21 GLY GLY A . n A 1 26 GLN 26 22 22 GLN GLN A . n A 1 27 ILE 27 23 23 ILE ILE A . n A 1 28 TYR 28 24 24 TYR TYR A . n A 1 29 SER 29 25 25 SER SER A . n A 1 30 ARG 30 26 26 ARG ARG A . n A 1 31 PHE 31 27 27 PHE PHE A . n A 1 32 GLU 32 28 28 GLU GLU A . n A 1 33 ASN 33 29 29 ASN ASN A . n A 1 34 ALA 34 30 30 ALA ALA A . n A 1 35 GLY 35 31 31 GLY GLY A . n A 1 36 LEU 36 32 32 LEU LEU A . n A 1 37 LYS 37 33 33 LYS LYS A . n A 1 38 ILE 38 34 34 ILE ILE A . n A 1 39 VAL 39 35 35 VAL VAL A . n A 1 40 ALA 40 36 36 ALA ALA A . n A 1 41 ALA 41 37 37 ALA ALA A . n A 1 42 ARG 42 38 38 ARG ARG A . n A 1 43 MET 43 39 39 MET MET A . n A 1 44 ALA 44 40 40 ALA ALA A . n A 1 45 HIS 45 41 41 HIS HIS A . n A 1 46 LEU 46 42 42 LEU LEU A . n A 1 47 SER 47 43 43 SER SER A . n A 1 48 ARG 48 44 44 ARG ARG A . n A 1 49 ALA 49 45 45 ALA ALA A . n A 1 50 ASP 50 46 46 ASP ASP A . n A 1 51 ALA 51 47 47 ALA ALA A . n A 1 52 GLU 52 48 48 GLU GLU A . n A 1 53 LYS 53 49 49 LYS LYS A . n A 1 54 PHE 54 50 50 PHE PHE A . n A 1 55 TYR 55 51 51 TYR TYR A . n A 1 56 ALA 56 52 52 ALA ALA A . n A 1 57 VAL 57 53 53 VAL VAL A . n A 1 58 HIS 58 54 54 HIS HIS A . n A 1 59 ALA 59 55 55 ALA ALA A . n A 1 60 GLU 60 56 56 GLU GLU A . n A 1 61 ARG 61 57 57 ARG ARG A . n A 1 62 PRO 62 58 58 PRO PRO A . n A 1 63 PHE 63 59 59 PHE PHE A . n A 1 64 PHE 64 60 60 PHE PHE A . n A 1 65 LYS 65 61 61 LYS LYS A . n A 1 66 ASP 66 62 62 ASP ASP A . n A 1 67 LEU 67 63 63 LEU LEU A . n A 1 68 VAL 68 64 64 VAL VAL A . n A 1 69 GLU 69 65 65 GLU GLU A . n A 1 70 PHE 70 66 66 PHE PHE A . n A 1 71 MET 71 67 67 MET MET A . n A 1 72 ILE 72 68 68 ILE ILE A . n A 1 73 SER 73 69 69 SER SER A . n A 1 74 GLY 74 70 70 GLY GLY A . n A 1 75 PRO 75 71 71 PRO PRO A . n A 1 76 VAL 76 72 72 VAL VAL A . n A 1 77 MET 77 73 73 MET MET A . n A 1 78 ILE 78 74 74 ILE ILE A . n A 1 79 GLN 79 75 75 GLN GLN A . n A 1 80 VAL 80 76 76 VAL VAL A . n A 1 81 LEU 81 77 77 LEU LEU A . n A 1 82 GLU 82 78 78 GLU GLU A . n A 1 83 GLY 83 79 79 GLY GLY A . n A 1 84 GLU 84 80 80 GLU GLU A . n A 1 85 ASP 85 81 81 ASP ASP A . n A 1 86 ALA 86 82 82 ALA ALA A . n A 1 87 ILE 87 83 83 ILE ILE A . n A 1 88 LEU 88 84 84 LEU LEU A . n A 1 89 LYS 89 85 85 LYS LYS A . n A 1 90 ASN 90 86 86 ASN ASN A . n A 1 91 ARG 91 87 87 ARG ARG A . n A 1 92 ASP 92 88 88 ASP ASP A . n A 1 93 LEU 93 89 89 LEU LEU A . n A 1 94 MET 94 90 90 MET MET A . n A 1 95 GLY 95 91 91 GLY GLY A . n A 1 96 ALA 96 92 92 ALA ALA A . n A 1 97 THR 97 93 93 THR THR A . n A 1 98 ASP 98 94 94 ASP ASP A . n A 1 99 PRO 99 95 95 PRO PRO A . n A 1 100 LYS 100 96 96 LYS LYS A . n A 1 101 LYS 101 97 97 LYS LYS A . n A 1 102 ALA 102 98 98 ALA ALA A . n A 1 103 GLU 103 99 99 GLU GLU A . n A 1 104 LYS 104 100 100 LYS LYS A . n A 1 105 GLY 105 101 101 GLY GLY A . n A 1 106 THR 106 102 102 THR THR A . n A 1 107 ILE 107 103 103 ILE ILE A . n A 1 108 ARG 108 104 104 ARG ARG A . n A 1 109 ALA 109 105 105 ALA ALA A . n A 1 110 ASP 110 106 106 ASP ASP A . n A 1 111 PHE 111 107 107 PHE PHE A . n A 1 112 ALA 112 108 108 ALA ALA A . n A 1 113 ASP 113 109 109 ASP ASP A . n A 1 114 SER 114 110 110 SER SER A . n A 1 115 ILE 115 111 111 ILE ILE A . n A 1 116 ASP 116 112 112 ASP ASP A . n A 1 117 ALA 117 113 113 ALA ALA A . n A 1 118 ASN 118 114 114 ASN ASN A . n A 1 119 ALA 119 115 115 ALA ALA A . n A 1 120 VAL 120 116 116 VAL VAL A . n A 1 121 HIS 121 117 117 HIS HIS A . n A 1 122 GLY 122 118 118 GLY GLY A . n A 1 123 SER 123 119 119 SER SER A . n A 1 124 ASP 124 120 120 ASP ASP A . n A 1 125 ALA 125 121 121 ALA ALA A . n A 1 126 PRO 126 122 122 PRO PRO A . n A 1 127 GLU 127 123 123 GLU GLU A . n A 1 128 THR 128 124 124 THR THR A . n A 1 129 ALA 129 125 125 ALA ALA A . n A 1 130 ARG 130 126 126 ARG ARG A . n A 1 131 VAL 131 127 127 VAL VAL A . n A 1 132 GLU 132 128 128 GLU GLU A . n A 1 133 ILE 133 129 129 ILE ILE A . n A 1 134 ALA 134 130 130 ALA ALA A . n A 1 135 PHE 135 131 131 PHE PHE A . n A 1 136 PHE 136 132 132 PHE PHE A . n A 1 137 PHE 137 133 133 PHE PHE A . n A 1 138 PRO 138 134 134 PRO PRO A . n A 1 139 GLU 139 135 135 GLU GLU A . n A 1 140 MET 140 136 136 MET MET A . n A 1 141 ASN 141 137 137 ASN ASN A . n A 1 142 VAL 142 138 138 VAL VAL A . n A 1 143 TYR 143 139 139 TYR TYR A . n A 1 144 SER 144 140 140 SER SER A . n A 1 145 ARG 145 141 141 ARG ARG A . n B 1 1 GLY 1 -3 ? ? ? B . n B 1 2 PRO 2 -2 ? ? ? B . n B 1 3 GLY 3 -1 ? ? ? B . n B 1 4 SER 4 0 ? ? ? B . n B 1 5 MET 5 1 ? ? ? B . n B 1 6 ALA 6 2 ? ? ? B . n B 1 7 LEU 7 3 3 LEU LEU B . n B 1 8 GLU 8 4 4 GLU GLU B . n B 1 9 ARG 9 5 5 ARG ARG B . n B 1 10 THR 10 6 6 THR THR B . n B 1 11 LEU 11 7 7 LEU LEU B . n B 1 12 SER 12 8 8 SER SER B . n B 1 13 ILE 13 9 9 ILE ILE B . n B 1 14 ILE 14 10 10 ILE ILE B . n B 1 15 LYS 15 11 11 LYS LYS B . n B 1 16 PRO 16 12 12 PRO PRO B . n B 1 17 ASP 17 13 13 ASP ASP B . n B 1 18 ALA 18 14 14 ALA ALA B . n B 1 19 VAL 19 15 15 VAL VAL B . n B 1 20 ALA 20 16 16 ALA ALA B . n B 1 21 LYS 21 17 17 LYS LYS B . n B 1 22 ASN 22 18 18 ASN ASN B . n B 1 23 VAL 23 19 19 VAL VAL B . n B 1 24 ILE 24 20 20 ILE ILE B . n B 1 25 GLY 25 21 21 GLY GLY B . n B 1 26 GLN 26 22 22 GLN GLN B . n B 1 27 ILE 27 23 23 ILE ILE B . n B 1 28 TYR 28 24 24 TYR TYR B . n B 1 29 SER 29 25 25 SER SER B . n B 1 30 ARG 30 26 26 ARG ARG B . n B 1 31 PHE 31 27 27 PHE PHE B . n B 1 32 GLU 32 28 28 GLU GLU B . n B 1 33 ASN 33 29 29 ASN ASN B . n B 1 34 ALA 34 30 30 ALA ALA B . n B 1 35 GLY 35 31 31 GLY GLY B . n B 1 36 LEU 36 32 32 LEU LEU B . n B 1 37 LYS 37 33 33 LYS LYS B . n B 1 38 ILE 38 34 34 ILE ILE B . n B 1 39 VAL 39 35 35 VAL VAL B . n B 1 40 ALA 40 36 36 ALA ALA B . n B 1 41 ALA 41 37 37 ALA ALA B . n B 1 42 ARG 42 38 38 ARG ARG B . n B 1 43 MET 43 39 39 MET MET B . n B 1 44 ALA 44 40 40 ALA ALA B . n B 1 45 HIS 45 41 41 HIS HIS B . n B 1 46 LEU 46 42 42 LEU LEU B . n B 1 47 SER 47 43 43 SER SER B . n B 1 48 ARG 48 44 44 ARG ARG B . n B 1 49 ALA 49 45 45 ALA ALA B . n B 1 50 ASP 50 46 46 ASP ASP B . n B 1 51 ALA 51 47 47 ALA ALA B . n B 1 52 GLU 52 48 48 GLU GLU B . n B 1 53 LYS 53 49 49 LYS LYS B . n B 1 54 PHE 54 50 50 PHE PHE B . n B 1 55 TYR 55 51 51 TYR TYR B . n B 1 56 ALA 56 52 52 ALA ALA B . n B 1 57 VAL 57 53 ? ? ? B . n B 1 58 HIS 58 54 ? ? ? B . n B 1 59 ALA 59 55 ? ? ? B . n B 1 60 GLU 60 56 ? ? ? B . n B 1 61 ARG 61 57 ? ? ? B . n B 1 62 PRO 62 58 ? ? ? B . n B 1 63 PHE 63 59 ? ? ? B . n B 1 64 PHE 64 60 ? ? ? B . n B 1 65 LYS 65 61 61 LYS LYS B . n B 1 66 ASP 66 62 62 ASP ASP B . n B 1 67 LEU 67 63 63 LEU LEU B . n B 1 68 VAL 68 64 64 VAL VAL B . n B 1 69 GLU 69 65 65 GLU GLU B . n B 1 70 PHE 70 66 66 PHE PHE B . n B 1 71 MET 71 67 67 MET MET B . n B 1 72 ILE 72 68 68 ILE ILE B . n B 1 73 SER 73 69 69 SER SER B . n B 1 74 GLY 74 70 70 GLY GLY B . n B 1 75 PRO 75 71 71 PRO PRO B . n B 1 76 VAL 76 72 72 VAL VAL B . n B 1 77 MET 77 73 73 MET MET B . n B 1 78 ILE 78 74 74 ILE ILE B . n B 1 79 GLN 79 75 75 GLN GLN B . n B 1 80 VAL 80 76 76 VAL VAL B . n B 1 81 LEU 81 77 77 LEU LEU B . n B 1 82 GLU 82 78 78 GLU GLU B . n B 1 83 GLY 83 79 79 GLY GLY B . n B 1 84 GLU 84 80 80 GLU GLU B . n B 1 85 ASP 85 81 81 ASP ASP B . n B 1 86 ALA 86 82 82 ALA ALA B . n B 1 87 ILE 87 83 83 ILE ILE B . n B 1 88 LEU 88 84 84 LEU LEU B . n B 1 89 LYS 89 85 85 LYS LYS B . n B 1 90 ASN 90 86 86 ASN ASN B . n B 1 91 ARG 91 87 87 ARG ARG B . n B 1 92 ASP 92 88 88 ASP ASP B . n B 1 93 LEU 93 89 89 LEU LEU B . n B 1 94 MET 94 90 90 MET MET B . n B 1 95 GLY 95 91 91 GLY GLY B . n B 1 96 ALA 96 92 92 ALA ALA B . n B 1 97 THR 97 93 93 THR THR B . n B 1 98 ASP 98 94 94 ASP ASP B . n B 1 99 PRO 99 95 95 PRO PRO B . n B 1 100 LYS 100 96 96 LYS LYS B . n B 1 101 LYS 101 97 97 LYS LYS B . n B 1 102 ALA 102 98 98 ALA ALA B . n B 1 103 GLU 103 99 99 GLU GLU B . n B 1 104 LYS 104 100 100 LYS LYS B . n B 1 105 GLY 105 101 101 GLY GLY B . n B 1 106 THR 106 102 102 THR THR B . n B 1 107 ILE 107 103 103 ILE ILE B . n B 1 108 ARG 108 104 104 ARG ARG B . n B 1 109 ALA 109 105 105 ALA ALA B . n B 1 110 ASP 110 106 106 ASP ASP B . n B 1 111 PHE 111 107 107 PHE PHE B . n B 1 112 ALA 112 108 108 ALA ALA B . n B 1 113 ASP 113 109 109 ASP ASP B . n B 1 114 SER 114 110 110 SER SER B . n B 1 115 ILE 115 111 111 ILE ILE B . n B 1 116 ASP 116 112 112 ASP ASP B . n B 1 117 ALA 117 113 113 ALA ALA B . n B 1 118 ASN 118 114 114 ASN ASN B . n B 1 119 ALA 119 115 115 ALA ALA B . n B 1 120 VAL 120 116 116 VAL VAL B . n B 1 121 HIS 121 117 117 HIS HIS B . n B 1 122 GLY 122 118 118 GLY GLY B . n B 1 123 SER 123 119 119 SER SER B . n B 1 124 ASP 124 120 120 ASP ASP B . n B 1 125 ALA 125 121 121 ALA ALA B . n B 1 126 PRO 126 122 122 PRO PRO B . n B 1 127 GLU 127 123 123 GLU GLU B . n B 1 128 THR 128 124 124 THR THR B . n B 1 129 ALA 129 125 125 ALA ALA B . n B 1 130 ARG 130 126 126 ARG ARG B . n B 1 131 VAL 131 127 127 VAL VAL B . n B 1 132 GLU 132 128 128 GLU GLU B . n B 1 133 ILE 133 129 129 ILE ILE B . n B 1 134 ALA 134 130 130 ALA ALA B . n B 1 135 PHE 135 131 131 PHE PHE B . n B 1 136 PHE 136 132 132 PHE PHE B . n B 1 137 PHE 137 133 133 PHE PHE B . n B 1 138 PRO 138 134 134 PRO PRO B . n B 1 139 GLU 139 135 135 GLU GLU B . n B 1 140 MET 140 136 136 MET MET B . n B 1 141 ASN 141 137 137 ASN ASN B . n B 1 142 VAL 142 138 138 VAL VAL B . n B 1 143 TYR 143 139 139 TYR TYR B . n B 1 144 SER 144 140 140 SER SER B . n B 1 145 ARG 145 141 141 ARG ARG B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NIAID, National Institute of Allergy and Infectious Diseases' _pdbx_SG_project.full_name_of_center 'Seattle Structural Genomics Center for Infectious Disease' _pdbx_SG_project.initial_of_center SSGCID # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 1 201 200 SO4 SO4 A . D 3 CL 1 202 1 CL CL A . E 2 SO4 1 201 200 SO4 SO4 B . F 2 SO4 1 202 1 SO4 SO4 B . G 2 SO4 1 203 2 SO4 SO4 B . H 4 HOH 1 301 1 HOH HOH A . H 4 HOH 2 302 2 HOH HOH A . H 4 HOH 3 303 3 HOH HOH A . H 4 HOH 4 304 4 HOH HOH A . H 4 HOH 5 305 5 HOH HOH A . H 4 HOH 6 306 6 HOH HOH A . H 4 HOH 7 307 7 HOH HOH A . H 4 HOH 8 308 8 HOH HOH A . H 4 HOH 9 309 10 HOH HOH A . H 4 HOH 10 310 11 HOH HOH A . H 4 HOH 11 311 13 HOH HOH A . H 4 HOH 12 312 14 HOH HOH A . H 4 HOH 13 313 15 HOH HOH A . H 4 HOH 14 314 16 HOH HOH A . H 4 HOH 15 315 17 HOH HOH A . H 4 HOH 16 316 20 HOH HOH A . H 4 HOH 17 317 23 HOH HOH A . H 4 HOH 18 318 25 HOH HOH A . H 4 HOH 19 319 26 HOH HOH A . H 4 HOH 20 320 36 HOH HOH A . H 4 HOH 21 321 39 HOH HOH A . H 4 HOH 22 322 40 HOH HOH A . H 4 HOH 23 323 41 HOH HOH A . H 4 HOH 24 324 42 HOH HOH A . H 4 HOH 25 325 48 HOH HOH A . H 4 HOH 26 326 49 HOH HOH A . H 4 HOH 27 327 50 HOH HOH A . H 4 HOH 28 328 54 HOH HOH A . H 4 HOH 29 329 56 HOH HOH A . H 4 HOH 30 330 57 HOH HOH A . H 4 HOH 31 331 59 HOH HOH A . H 4 HOH 32 332 71 HOH HOH A . I 4 HOH 1 301 27 HOH HOH B . I 4 HOH 2 302 28 HOH HOH B . I 4 HOH 3 303 29 HOH HOH B . I 4 HOH 4 304 30 HOH HOH B . I 4 HOH 5 305 31 HOH HOH B . I 4 HOH 6 306 34 HOH HOH B . I 4 HOH 7 307 35 HOH HOH B . I 4 HOH 8 308 37 HOH HOH B . I 4 HOH 9 309 38 HOH HOH B . I 4 HOH 10 310 43 HOH HOH B . I 4 HOH 11 311 45 HOH HOH B . I 4 HOH 12 312 46 HOH HOH B . I 4 HOH 13 313 51 HOH HOH B . I 4 HOH 14 314 55 HOH HOH B . I 4 HOH 15 315 58 HOH HOH B . I 4 HOH 16 316 60 HOH HOH B . I 4 HOH 17 317 61 HOH HOH B . I 4 HOH 18 318 63 HOH HOH B . I 4 HOH 19 319 64 HOH HOH B . I 4 HOH 20 320 65 HOH HOH B . I 4 HOH 21 321 66 HOH HOH B . I 4 HOH 22 322 67 HOH HOH B . I 4 HOH 23 323 68 HOH HOH B . I 4 HOH 24 324 69 HOH HOH B . I 4 HOH 25 325 70 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,H 2 1 B,E,F,G,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 306 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id H _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-03-07 2 'Structure model' 1 1 2013-10-30 3 'Structure model' 1 2 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_ref_seq_dif 6 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 20.1606 9.2029 -2.5870 0.0862 0.0630 0.0374 0.0298 -0.0204 -0.0204 2.4788 2.4519 2.8739 -0.0912 -0.3476 -0.2912 0.0645 0.0214 -0.0859 0.0758 -0.1710 -0.1171 -0.1358 0.1675 0.1423 'X-RAY DIFFRACTION' 2 ? refined 31.8714 5.9355 -14.2515 0.4881 0.3918 0.3913 0.2145 0.2388 -0.1503 12.6237 4.5071 0.8503 -1.9076 -0.1826 -1.7950 -0.3209 -0.0743 0.3952 0.5540 -1.3064 -0.4196 -0.5176 0.3855 0.0168 'X-RAY DIFFRACTION' 3 ? refined 21.4441 2.8941 1.8124 0.1302 0.0595 0.1066 0.0192 0.0097 -0.0062 2.7495 2.2067 3.6987 0.3402 0.9649 -0.2616 0.1256 -0.0812 -0.0444 -0.1252 -0.3543 -0.0843 0.1394 0.3107 -0.0367 'X-RAY DIFFRACTION' 4 ? refined 23.5769 4.9994 -1.7469 0.0964 0.0694 0.0541 0.0487 -0.0126 -0.0067 2.4484 4.2570 2.6001 1.2869 0.7206 1.0052 0.0465 -0.0816 0.0351 0.1005 -0.2486 -0.1612 -0.1097 0.2898 0.0875 'X-RAY DIFFRACTION' 5 ? refined 2.0375 -6.0359 21.8433 0.0820 0.1105 0.1144 0.0571 -0.0137 0.0758 2.8881 3.4802 1.7993 -0.3654 -0.4787 -0.3790 0.1326 0.0072 -0.1398 0.2064 0.0858 0.2554 -0.1141 -0.1892 -0.2017 'X-RAY DIFFRACTION' 6 ? refined 10.6265 -13.8149 8.9790 0.5567 0.4035 0.3798 0.2653 0.1101 0.0852 2.0120 1.2852 37.1836 1.0715 -5.3639 1.1175 -0.0342 -0.2114 0.2456 0.0019 0.4563 0.4611 -0.1646 -0.3029 -0.6008 'X-RAY DIFFRACTION' 7 ? refined 11.8823 -5.3124 9.6200 0.6209 0.2381 0.2789 -0.0128 0.0456 0.0931 6.2068 30.5636 10.6164 -11.0827 2.9772 4.6300 1.0091 -0.2986 -0.7105 0.0593 -0.7102 0.8843 -2.1895 0.2179 -0.0730 'X-RAY DIFFRACTION' 8 ? refined -1.7508 -9.7921 18.0571 0.0627 0.1898 0.1666 0.0490 -0.0385 0.0932 1.8857 2.7419 1.3832 -1.2150 0.0618 -1.2250 0.1381 0.1594 -0.2975 0.1422 -0.0221 0.4490 -0.1109 -0.0968 -0.3517 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 2 A 50 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 A 51 A 69 ? . . . . ? 'X-RAY DIFFRACTION' 3 3 A 70 A 93 ? . . . . ? 'X-RAY DIFFRACTION' 4 4 A 94 A 141 ? . . . . ? 'X-RAY DIFFRACTION' 5 5 B 3 B 45 ? . . . . ? 'X-RAY DIFFRACTION' 6 6 B 46 B 63 ? . . . . ? 'X-RAY DIFFRACTION' 7 7 B 64 B 69 ? . . . . ? 'X-RAY DIFFRACTION' 8 8 B 70 B 141 ? . . . . ? # _pdbx_phasing_MR.entry_id 4DUT _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 3.500 _pdbx_phasing_MR.d_res_low_rotation 19.640 _pdbx_phasing_MR.d_res_high_translation 3.500 _pdbx_phasing_MR.d_res_low_translation 19.640 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 2 PHASER 2.3.0 'Fri Sep 30 20:10:19 2011 (svn )' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 3 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 XDS . ? ? ? ? 'data reduction' ? ? ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OH _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 TYR _pdbx_validate_close_contact.auth_seq_id_1 51 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O4 _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 SO4 _pdbx_validate_close_contact.auth_seq_id_2 201 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.11 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 OE1 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 GLU _pdbx_validate_symm_contact.auth_seq_id_1 48 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 OD1 _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 ASP _pdbx_validate_symm_contact.auth_seq_id_2 81 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_554 _pdbx_validate_symm_contact.dist 2.16 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 115 ? ? 75.09 -47.86 2 1 ASP B 62 ? ? -151.71 -2.84 3 1 ALA B 115 ? ? 78.97 -55.88 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 33 ? CG ? A LYS 37 CG 2 1 Y 1 A LYS 33 ? CD ? A LYS 37 CD 3 1 Y 1 A LYS 33 ? CE ? A LYS 37 CE 4 1 Y 1 A LYS 33 ? NZ ? A LYS 37 NZ 5 1 Y 1 A GLU 56 ? CG ? A GLU 60 CG 6 1 Y 1 A GLU 56 ? CD ? A GLU 60 CD 7 1 Y 1 A GLU 56 ? OE1 ? A GLU 60 OE1 8 1 Y 1 A GLU 56 ? OE2 ? A GLU 60 OE2 9 1 Y 1 A ARG 57 ? CG ? A ARG 61 CG 10 1 Y 1 A ARG 57 ? CD ? A ARG 61 CD 11 1 Y 1 A ARG 57 ? NE ? A ARG 61 NE 12 1 Y 1 A ARG 57 ? CZ ? A ARG 61 CZ 13 1 Y 1 A ARG 57 ? NH1 ? A ARG 61 NH1 14 1 Y 1 A ARG 57 ? NH2 ? A ARG 61 NH2 15 1 Y 1 A PHE 59 ? CG ? A PHE 63 CG 16 1 Y 1 A PHE 59 ? CD1 ? A PHE 63 CD1 17 1 Y 1 A PHE 59 ? CD2 ? A PHE 63 CD2 18 1 Y 1 A PHE 59 ? CE1 ? A PHE 63 CE1 19 1 Y 1 A PHE 59 ? CE2 ? A PHE 63 CE2 20 1 Y 1 A PHE 59 ? CZ ? A PHE 63 CZ 21 1 Y 1 A LYS 61 ? CG ? A LYS 65 CG 22 1 Y 1 A LYS 61 ? CD ? A LYS 65 CD 23 1 Y 1 A LYS 61 ? CE ? A LYS 65 CE 24 1 Y 1 A LYS 61 ? NZ ? A LYS 65 NZ 25 1 Y 1 A PHE 66 ? CG ? A PHE 70 CG 26 1 Y 1 A PHE 66 ? CD1 ? A PHE 70 CD1 27 1 Y 1 A PHE 66 ? CD2 ? A PHE 70 CD2 28 1 Y 1 A PHE 66 ? CE1 ? A PHE 70 CE1 29 1 Y 1 A PHE 66 ? CE2 ? A PHE 70 CE2 30 1 Y 1 A PHE 66 ? CZ ? A PHE 70 CZ 31 1 Y 1 A LEU 84 ? CG ? A LEU 88 CG 32 1 Y 1 A LEU 84 ? CD1 ? A LEU 88 CD1 33 1 Y 1 A LEU 84 ? CD2 ? A LEU 88 CD2 34 1 Y 1 A LYS 96 ? CG ? A LYS 100 CG 35 1 Y 1 A LYS 96 ? CD ? A LYS 100 CD 36 1 Y 1 A LYS 96 ? CE ? A LYS 100 CE 37 1 Y 1 A LYS 96 ? NZ ? A LYS 100 NZ 38 1 Y 1 A LYS 97 ? CG ? A LYS 101 CG 39 1 Y 1 A LYS 97 ? CD ? A LYS 101 CD 40 1 Y 1 A LYS 97 ? CE ? A LYS 101 CE 41 1 Y 1 A LYS 97 ? NZ ? A LYS 101 NZ 42 1 Y 1 A LYS 100 ? CG ? A LYS 104 CG 43 1 Y 1 A LYS 100 ? CD ? A LYS 104 CD 44 1 Y 1 A LYS 100 ? CE ? A LYS 104 CE 45 1 Y 1 A LYS 100 ? NZ ? A LYS 104 NZ 46 1 Y 1 A ILE 111 ? CG1 ? A ILE 115 CG1 47 1 Y 1 A ILE 111 ? CG2 ? A ILE 115 CG2 48 1 Y 1 A ILE 111 ? CD1 ? A ILE 115 CD1 49 1 Y 1 A GLU 123 ? CG ? A GLU 127 CG 50 1 Y 1 A GLU 123 ? CD ? A GLU 127 CD 51 1 Y 1 A GLU 123 ? OE1 ? A GLU 127 OE1 52 1 Y 1 A GLU 123 ? OE2 ? A GLU 127 OE2 53 1 Y 1 B LYS 33 ? CG ? B LYS 37 CG 54 1 Y 1 B LYS 33 ? CD ? B LYS 37 CD 55 1 Y 1 B LYS 33 ? CE ? B LYS 37 CE 56 1 Y 1 B LYS 33 ? NZ ? B LYS 37 NZ 57 1 Y 1 B LYS 61 ? CG ? B LYS 65 CG 58 1 Y 1 B LYS 61 ? CD ? B LYS 65 CD 59 1 Y 1 B LYS 61 ? CE ? B LYS 65 CE 60 1 Y 1 B LYS 61 ? NZ ? B LYS 65 NZ 61 1 Y 1 B ASP 62 ? CG ? B ASP 66 CG 62 1 Y 1 B ASP 62 ? OD1 ? B ASP 66 OD1 63 1 Y 1 B ASP 62 ? OD2 ? B ASP 66 OD2 64 1 Y 1 B LEU 63 ? CG ? B LEU 67 CG 65 1 Y 1 B LEU 63 ? CD1 ? B LEU 67 CD1 66 1 Y 1 B LEU 63 ? CD2 ? B LEU 67 CD2 67 1 Y 1 B LEU 84 ? CG ? B LEU 88 CG 68 1 Y 1 B LEU 84 ? CD1 ? B LEU 88 CD1 69 1 Y 1 B LEU 84 ? CD2 ? B LEU 88 CD2 70 1 Y 1 B ARG 87 ? CG ? B ARG 91 CG 71 1 Y 1 B ARG 87 ? CD ? B ARG 91 CD 72 1 Y 1 B ARG 87 ? NE ? B ARG 91 NE 73 1 Y 1 B ARG 87 ? CZ ? B ARG 91 CZ 74 1 Y 1 B ARG 87 ? NH1 ? B ARG 91 NH1 75 1 Y 1 B ARG 87 ? NH2 ? B ARG 91 NH2 76 1 Y 1 B LYS 96 ? CG ? B LYS 100 CG 77 1 Y 1 B LYS 96 ? CD ? B LYS 100 CD 78 1 Y 1 B LYS 96 ? CE ? B LYS 100 CE 79 1 Y 1 B LYS 96 ? NZ ? B LYS 100 NZ 80 1 Y 1 B GLU 99 ? CG ? B GLU 103 CG 81 1 Y 1 B GLU 99 ? CD ? B GLU 103 CD 82 1 Y 1 B GLU 99 ? OE1 ? B GLU 103 OE1 83 1 Y 1 B GLU 99 ? OE2 ? B GLU 103 OE2 84 1 Y 1 B LYS 100 ? CG ? B LYS 104 CG 85 1 Y 1 B LYS 100 ? CD ? B LYS 104 CD 86 1 Y 1 B LYS 100 ? CE ? B LYS 104 CE 87 1 Y 1 B LYS 100 ? NZ ? B LYS 104 NZ 88 1 Y 1 B ILE 111 ? CG1 ? B ILE 115 CG1 89 1 Y 1 B ILE 111 ? CG2 ? B ILE 115 CG2 90 1 Y 1 B ILE 111 ? CD1 ? B ILE 115 CD1 91 1 Y 1 B GLU 123 ? CG ? B GLU 127 CG 92 1 Y 1 B GLU 123 ? CD ? B GLU 127 CD 93 1 Y 1 B GLU 123 ? OE1 ? B GLU 127 OE1 94 1 Y 1 B GLU 123 ? OE2 ? B GLU 127 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -3 ? A GLY 1 2 1 Y 1 A PRO -2 ? A PRO 2 3 1 Y 1 A GLY -1 ? A GLY 3 4 1 Y 1 A SER 0 ? A SER 4 5 1 Y 1 A MET 1 ? A MET 5 6 1 Y 1 B GLY -3 ? B GLY 1 7 1 Y 1 B PRO -2 ? B PRO 2 8 1 Y 1 B GLY -1 ? B GLY 3 9 1 Y 1 B SER 0 ? B SER 4 10 1 Y 1 B MET 1 ? B MET 5 11 1 Y 1 B ALA 2 ? B ALA 6 12 1 Y 1 B VAL 53 ? B VAL 57 13 1 Y 1 B HIS 54 ? B HIS 58 14 1 Y 1 B ALA 55 ? B ALA 59 15 1 Y 1 B GLU 56 ? B GLU 60 16 1 Y 1 B ARG 57 ? B ARG 61 17 1 Y 1 B PRO 58 ? B PRO 62 18 1 Y 1 B PHE 59 ? B PHE 63 19 1 Y 1 B PHE 60 ? B PHE 64 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CL CL CL N N 74 GLN N N N N 75 GLN CA C N S 76 GLN C C N N 77 GLN O O N N 78 GLN CB C N N 79 GLN CG C N N 80 GLN CD C N N 81 GLN OE1 O N N 82 GLN NE2 N N N 83 GLN OXT O N N 84 GLN H H N N 85 GLN H2 H N N 86 GLN HA H N N 87 GLN HB2 H N N 88 GLN HB3 H N N 89 GLN HG2 H N N 90 GLN HG3 H N N 91 GLN HE21 H N N 92 GLN HE22 H N N 93 GLN HXT H N N 94 GLU N N N N 95 GLU CA C N S 96 GLU C C N N 97 GLU O O N N 98 GLU CB C N N 99 GLU CG C N N 100 GLU CD C N N 101 GLU OE1 O N N 102 GLU OE2 O N N 103 GLU OXT O N N 104 GLU H H N N 105 GLU H2 H N N 106 GLU HA H N N 107 GLU HB2 H N N 108 GLU HB3 H N N 109 GLU HG2 H N N 110 GLU HG3 H N N 111 GLU HE2 H N N 112 GLU HXT H N N 113 GLY N N N N 114 GLY CA C N N 115 GLY C C N N 116 GLY O O N N 117 GLY OXT O N N 118 GLY H H N N 119 GLY H2 H N N 120 GLY HA2 H N N 121 GLY HA3 H N N 122 GLY HXT H N N 123 HIS N N N N 124 HIS CA C N S 125 HIS C C N N 126 HIS O O N N 127 HIS CB C N N 128 HIS CG C Y N 129 HIS ND1 N Y N 130 HIS CD2 C Y N 131 HIS CE1 C Y N 132 HIS NE2 N Y N 133 HIS OXT O N N 134 HIS H H N N 135 HIS H2 H N N 136 HIS HA H N N 137 HIS HB2 H N N 138 HIS HB3 H N N 139 HIS HD1 H N N 140 HIS HD2 H N N 141 HIS HE1 H N N 142 HIS HE2 H N N 143 HIS HXT H N N 144 HOH O O N N 145 HOH H1 H N N 146 HOH H2 H N N 147 ILE N N N N 148 ILE CA C N S 149 ILE C C N N 150 ILE O O N N 151 ILE CB C N S 152 ILE CG1 C N N 153 ILE CG2 C N N 154 ILE CD1 C N N 155 ILE OXT O N N 156 ILE H H N N 157 ILE H2 H N N 158 ILE HA H N N 159 ILE HB H N N 160 ILE HG12 H N N 161 ILE HG13 H N N 162 ILE HG21 H N N 163 ILE HG22 H N N 164 ILE HG23 H N N 165 ILE HD11 H N N 166 ILE HD12 H N N 167 ILE HD13 H N N 168 ILE HXT H N N 169 LEU N N N N 170 LEU CA C N S 171 LEU C C N N 172 LEU O O N N 173 LEU CB C N N 174 LEU CG C N N 175 LEU CD1 C N N 176 LEU CD2 C N N 177 LEU OXT O N N 178 LEU H H N N 179 LEU H2 H N N 180 LEU HA H N N 181 LEU HB2 H N N 182 LEU HB3 H N N 183 LEU HG H N N 184 LEU HD11 H N N 185 LEU HD12 H N N 186 LEU HD13 H N N 187 LEU HD21 H N N 188 LEU HD22 H N N 189 LEU HD23 H N N 190 LEU HXT H N N 191 LYS N N N N 192 LYS CA C N S 193 LYS C C N N 194 LYS O O N N 195 LYS CB C N N 196 LYS CG C N N 197 LYS CD C N N 198 LYS CE C N N 199 LYS NZ N N N 200 LYS OXT O N N 201 LYS H H N N 202 LYS H2 H N N 203 LYS HA H N N 204 LYS HB2 H N N 205 LYS HB3 H N N 206 LYS HG2 H N N 207 LYS HG3 H N N 208 LYS HD2 H N N 209 LYS HD3 H N N 210 LYS HE2 H N N 211 LYS HE3 H N N 212 LYS HZ1 H N N 213 LYS HZ2 H N N 214 LYS HZ3 H N N 215 LYS HXT H N N 216 MET N N N N 217 MET CA C N S 218 MET C C N N 219 MET O O N N 220 MET CB C N N 221 MET CG C N N 222 MET SD S N N 223 MET CE C N N 224 MET OXT O N N 225 MET H H N N 226 MET H2 H N N 227 MET HA H N N 228 MET HB2 H N N 229 MET HB3 H N N 230 MET HG2 H N N 231 MET HG3 H N N 232 MET HE1 H N N 233 MET HE2 H N N 234 MET HE3 H N N 235 MET HXT H N N 236 PHE N N N N 237 PHE CA C N S 238 PHE C C N N 239 PHE O O N N 240 PHE CB C N N 241 PHE CG C Y N 242 PHE CD1 C Y N 243 PHE CD2 C Y N 244 PHE CE1 C Y N 245 PHE CE2 C Y N 246 PHE CZ C Y N 247 PHE OXT O N N 248 PHE H H N N 249 PHE H2 H N N 250 PHE HA H N N 251 PHE HB2 H N N 252 PHE HB3 H N N 253 PHE HD1 H N N 254 PHE HD2 H N N 255 PHE HE1 H N N 256 PHE HE2 H N N 257 PHE HZ H N N 258 PHE HXT H N N 259 PRO N N N N 260 PRO CA C N S 261 PRO C C N N 262 PRO O O N N 263 PRO CB C N N 264 PRO CG C N N 265 PRO CD C N N 266 PRO OXT O N N 267 PRO H H N N 268 PRO HA H N N 269 PRO HB2 H N N 270 PRO HB3 H N N 271 PRO HG2 H N N 272 PRO HG3 H N N 273 PRO HD2 H N N 274 PRO HD3 H N N 275 PRO HXT H N N 276 SER N N N N 277 SER CA C N S 278 SER C C N N 279 SER O O N N 280 SER CB C N N 281 SER OG O N N 282 SER OXT O N N 283 SER H H N N 284 SER H2 H N N 285 SER HA H N N 286 SER HB2 H N N 287 SER HB3 H N N 288 SER HG H N N 289 SER HXT H N N 290 SO4 S S N N 291 SO4 O1 O N N 292 SO4 O2 O N N 293 SO4 O3 O N N 294 SO4 O4 O N N 295 THR N N N N 296 THR CA C N S 297 THR C C N N 298 THR O O N N 299 THR CB C N R 300 THR OG1 O N N 301 THR CG2 C N N 302 THR OXT O N N 303 THR H H N N 304 THR H2 H N N 305 THR HA H N N 306 THR HB H N N 307 THR HG1 H N N 308 THR HG21 H N N 309 THR HG22 H N N 310 THR HG23 H N N 311 THR HXT H N N 312 TYR N N N N 313 TYR CA C N S 314 TYR C C N N 315 TYR O O N N 316 TYR CB C N N 317 TYR CG C Y N 318 TYR CD1 C Y N 319 TYR CD2 C Y N 320 TYR CE1 C Y N 321 TYR CE2 C Y N 322 TYR CZ C Y N 323 TYR OH O N N 324 TYR OXT O N N 325 TYR H H N N 326 TYR H2 H N N 327 TYR HA H N N 328 TYR HB2 H N N 329 TYR HB3 H N N 330 TYR HD1 H N N 331 TYR HD2 H N N 332 TYR HE1 H N N 333 TYR HE2 H N N 334 TYR HH H N N 335 TYR HXT H N N 336 VAL N N N N 337 VAL CA C N S 338 VAL C C N N 339 VAL O O N N 340 VAL CB C N N 341 VAL CG1 C N N 342 VAL CG2 C N N 343 VAL OXT O N N 344 VAL H H N N 345 VAL H2 H N N 346 VAL HA H N N 347 VAL HB H N N 348 VAL HG11 H N N 349 VAL HG12 H N N 350 VAL HG13 H N N 351 VAL HG21 H N N 352 VAL HG22 H N N 353 VAL HG23 H N N 354 VAL HXT H N N 355 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 HOH O H1 sing N N 137 HOH O H2 sing N N 138 ILE N CA sing N N 139 ILE N H sing N N 140 ILE N H2 sing N N 141 ILE CA C sing N N 142 ILE CA CB sing N N 143 ILE CA HA sing N N 144 ILE C O doub N N 145 ILE C OXT sing N N 146 ILE CB CG1 sing N N 147 ILE CB CG2 sing N N 148 ILE CB HB sing N N 149 ILE CG1 CD1 sing N N 150 ILE CG1 HG12 sing N N 151 ILE CG1 HG13 sing N N 152 ILE CG2 HG21 sing N N 153 ILE CG2 HG22 sing N N 154 ILE CG2 HG23 sing N N 155 ILE CD1 HD11 sing N N 156 ILE CD1 HD12 sing N N 157 ILE CD1 HD13 sing N N 158 ILE OXT HXT sing N N 159 LEU N CA sing N N 160 LEU N H sing N N 161 LEU N H2 sing N N 162 LEU CA C sing N N 163 LEU CA CB sing N N 164 LEU CA HA sing N N 165 LEU C O doub N N 166 LEU C OXT sing N N 167 LEU CB CG sing N N 168 LEU CB HB2 sing N N 169 LEU CB HB3 sing N N 170 LEU CG CD1 sing N N 171 LEU CG CD2 sing N N 172 LEU CG HG sing N N 173 LEU CD1 HD11 sing N N 174 LEU CD1 HD12 sing N N 175 LEU CD1 HD13 sing N N 176 LEU CD2 HD21 sing N N 177 LEU CD2 HD22 sing N N 178 LEU CD2 HD23 sing N N 179 LEU OXT HXT sing N N 180 LYS N CA sing N N 181 LYS N H sing N N 182 LYS N H2 sing N N 183 LYS CA C sing N N 184 LYS CA CB sing N N 185 LYS CA HA sing N N 186 LYS C O doub N N 187 LYS C OXT sing N N 188 LYS CB CG sing N N 189 LYS CB HB2 sing N N 190 LYS CB HB3 sing N N 191 LYS CG CD sing N N 192 LYS CG HG2 sing N N 193 LYS CG HG3 sing N N 194 LYS CD CE sing N N 195 LYS CD HD2 sing N N 196 LYS CD HD3 sing N N 197 LYS CE NZ sing N N 198 LYS CE HE2 sing N N 199 LYS CE HE3 sing N N 200 LYS NZ HZ1 sing N N 201 LYS NZ HZ2 sing N N 202 LYS NZ HZ3 sing N N 203 LYS OXT HXT sing N N 204 MET N CA sing N N 205 MET N H sing N N 206 MET N H2 sing N N 207 MET CA C sing N N 208 MET CA CB sing N N 209 MET CA HA sing N N 210 MET C O doub N N 211 MET C OXT sing N N 212 MET CB CG sing N N 213 MET CB HB2 sing N N 214 MET CB HB3 sing N N 215 MET CG SD sing N N 216 MET CG HG2 sing N N 217 MET CG HG3 sing N N 218 MET SD CE sing N N 219 MET CE HE1 sing N N 220 MET CE HE2 sing N N 221 MET CE HE3 sing N N 222 MET OXT HXT sing N N 223 PHE N CA sing N N 224 PHE N H sing N N 225 PHE N H2 sing N N 226 PHE CA C sing N N 227 PHE CA CB sing N N 228 PHE CA HA sing N N 229 PHE C O doub N N 230 PHE C OXT sing N N 231 PHE CB CG sing N N 232 PHE CB HB2 sing N N 233 PHE CB HB3 sing N N 234 PHE CG CD1 doub Y N 235 PHE CG CD2 sing Y N 236 PHE CD1 CE1 sing Y N 237 PHE CD1 HD1 sing N N 238 PHE CD2 CE2 doub Y N 239 PHE CD2 HD2 sing N N 240 PHE CE1 CZ doub Y N 241 PHE CE1 HE1 sing N N 242 PHE CE2 CZ sing Y N 243 PHE CE2 HE2 sing N N 244 PHE CZ HZ sing N N 245 PHE OXT HXT sing N N 246 PRO N CA sing N N 247 PRO N CD sing N N 248 PRO N H sing N N 249 PRO CA C sing N N 250 PRO CA CB sing N N 251 PRO CA HA sing N N 252 PRO C O doub N N 253 PRO C OXT sing N N 254 PRO CB CG sing N N 255 PRO CB HB2 sing N N 256 PRO CB HB3 sing N N 257 PRO CG CD sing N N 258 PRO CG HG2 sing N N 259 PRO CG HG3 sing N N 260 PRO CD HD2 sing N N 261 PRO CD HD3 sing N N 262 PRO OXT HXT sing N N 263 SER N CA sing N N 264 SER N H sing N N 265 SER N H2 sing N N 266 SER CA C sing N N 267 SER CA CB sing N N 268 SER CA HA sing N N 269 SER C O doub N N 270 SER C OXT sing N N 271 SER CB OG sing N N 272 SER CB HB2 sing N N 273 SER CB HB3 sing N N 274 SER OG HG sing N N 275 SER OXT HXT sing N N 276 SO4 S O1 doub N N 277 SO4 S O2 doub N N 278 SO4 S O3 sing N N 279 SO4 S O4 sing N N 280 THR N CA sing N N 281 THR N H sing N N 282 THR N H2 sing N N 283 THR CA C sing N N 284 THR CA CB sing N N 285 THR CA HA sing N N 286 THR C O doub N N 287 THR C OXT sing N N 288 THR CB OG1 sing N N 289 THR CB CG2 sing N N 290 THR CB HB sing N N 291 THR OG1 HG1 sing N N 292 THR CG2 HG21 sing N N 293 THR CG2 HG22 sing N N 294 THR CG2 HG23 sing N N 295 THR OXT HXT sing N N 296 TYR N CA sing N N 297 TYR N H sing N N 298 TYR N H2 sing N N 299 TYR CA C sing N N 300 TYR CA CB sing N N 301 TYR CA HA sing N N 302 TYR C O doub N N 303 TYR C OXT sing N N 304 TYR CB CG sing N N 305 TYR CB HB2 sing N N 306 TYR CB HB3 sing N N 307 TYR CG CD1 doub Y N 308 TYR CG CD2 sing Y N 309 TYR CD1 CE1 sing Y N 310 TYR CD1 HD1 sing N N 311 TYR CD2 CE2 doub Y N 312 TYR CD2 HD2 sing N N 313 TYR CE1 CZ doub Y N 314 TYR CE1 HE1 sing N N 315 TYR CE2 CZ sing Y N 316 TYR CE2 HE2 sing N N 317 TYR CZ OH sing N N 318 TYR OH HH sing N N 319 TYR OXT HXT sing N N 320 VAL N CA sing N N 321 VAL N H sing N N 322 VAL N H2 sing N N 323 VAL CA C sing N N 324 VAL CA CB sing N N 325 VAL CA HA sing N N 326 VAL C O doub N N 327 VAL C OXT sing N N 328 VAL CB CG1 sing N N 329 VAL CB CG2 sing N N 330 VAL CB HB sing N N 331 VAL CG1 HG11 sing N N 332 VAL CG1 HG12 sing N N 333 VAL CG1 HG13 sing N N 334 VAL CG2 HG21 sing N N 335 VAL CG2 HG22 sing N N 336 VAL CG2 HG23 sing N N 337 VAL OXT HXT sing N N 338 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 'CHLORIDE ION' CL 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3PJ9 _pdbx_initial_refinement_model.details 'PDB ENTRY 3PJ9' #