HEADER VIRAL PROTEIN 24-FEB-12 4DW5 TITLE CRYSTAL STRUCTURE OF THE GLYCOPROTEIN ERNS FROM THE PESTIVIRUS BVDV-1 TITLE 2 IN COMPLEX WITH A NON-CLEAVABLE CPU DINUCLEOTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: E(RNS) GLYCOPROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: N-TERMINAL FRAGMENT; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOVINE VIRAL DIARRHEA VIRUS; SOURCE 3 ORGANISM_COMMON: BVDV; SOURCE 4 ORGANISM_TAXID: 268305; SOURCE 5 STRAIN: CP7; SOURCE 6 GENE: ERNS; SOURCE 7 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7227; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMT-BIP-BASED KEYWDS VIRUS GLYCOPROTEIN, T2 RIBONUCLEASE, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.KREY,F.BONTEMS,C.VONRHEIN,M.-C.VANEY,G.BRICOGNE,T.RUEMENAPF,F.A.REY REVDAT 3 13-SEP-23 4DW5 1 REMARK HETSYN REVDAT 2 29-JUL-20 4DW5 1 COMPND REMARK SEQADV HETNAM REVDAT 2 2 1 LINK SITE ATOM REVDAT 1 23-MAY-12 4DW5 0 JRNL AUTH T.KREY,F.BONTEMS,C.VONRHEIN,M.C.VANEY,G.BRICOGNE,T.RUMENAPF, JRNL AUTH 2 F.A.REY JRNL TITL CRYSTAL STRUCTURE OF THE PESTIVIRUS ENVELOPE GLYCOPROTEIN JRNL TITL 2 E(RNS) AND MECHANISTIC ANALYSIS OF ITS RIBONUCLEASE JRNL TITL 3 ACTIVITY. JRNL REF STRUCTURE V. 20 862 2012 JRNL REFN ISSN 0969-2126 JRNL PMID 22579253 JRNL DOI 10.1016/J.STR.2012.03.018 REMARK 2 REMARK 2 RESOLUTION. 2.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT BUSTER 2.9.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 3 NUMBER OF REFLECTIONS : 33314 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1672 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 17 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.21 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.28 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.84 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 1252 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2701 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1198 REMARK 3 BIN R VALUE (WORKING SET) : 0.2687 REMARK 3 BIN FREE R VALUE : 0.2982 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.31 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 54 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2537 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 457 REMARK 3 SOLVENT ATOMS : 180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.18550 REMARK 3 B22 (A**2) : -6.18550 REMARK 3 B33 (A**2) : 12.37100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.340 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.195 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.923 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3192 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4404 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 959 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 111 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 464 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3192 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 493 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : 10 ; 1.000 ; HARMONIC REMARK 3 UTILITY DISTANCES : 9 ; 1.000 ; HARMONIC REMARK 3 UTILITY ANGLES : 18 ; 1.000 ; HARMONIC REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3587 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.29 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.33 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.67 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4DW5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000070857. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-SEP-10 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99187 REMARK 200 MONOCHROMATOR : CHANNEL CUT SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33587 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.210 REMARK 200 RESOLUTION RANGE LOW (A) : 47.140 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.21 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 68.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4DVK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 33% PEG2000 MME, 100MM NA-ACETATE, REMARK 280 140MM (NH4)2SO4, 50MM KH2PO4, PH 4.6, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 140.84000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 70.42000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 105.63000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 35.21000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 176.05000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 140.84000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 70.42000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 35.21000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 105.63000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 176.05000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 1 REMARK 465 SER A 2 REMARK 465 GLN A 107 REMARK 465 ALA A 162 REMARK 465 VAL A 163 REMARK 465 SER A 164 REMARK 465 ASP A 165 REMARK 465 VAL A 166 REMARK 465 LEU A 167 REMARK 465 ARG B 1 REMARK 465 ALA B 162 REMARK 465 VAL B 163 REMARK 465 SER B 164 REMARK 465 ASP B 165 REMARK 465 VAL B 166 REMARK 465 LEU B 167 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 SER B 2 C REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 110 N - CA - C ANGL. DEV. = -16.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 12 108.74 -168.15 REMARK 500 THR A 69 -83.59 -117.42 REMARK 500 TYR A 87 -36.69 68.74 REMARK 500 ASP B 12 109.16 -166.65 REMARK 500 THR B 69 -83.70 -116.72 REMARK 500 CYS B 71 41.41 -144.96 REMARK 500 TYR B 87 -35.31 69.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 U B 1116 REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 NAG G 2 REMARK 615 1PE A 1119 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DVK RELATED DB: PDB REMARK 900 RELATED ID: 4DVL RELATED DB: PDB REMARK 900 RELATED ID: 4DVN RELATED DB: PDB REMARK 900 RELATED ID: 4DW3 RELATED DB: PDB REMARK 900 RELATED ID: 4DW4 RELATED DB: PDB REMARK 900 RELATED ID: 4DW7 RELATED DB: PDB REMARK 900 RELATED ID: 4DWA RELATED DB: PDB REMARK 900 RELATED ID: 4DWC RELATED DB: PDB DBREF 4DW5 A 3 167 UNP Q96662 POLG_BVDVC 271 435 DBREF 4DW5 B 3 167 UNP Q96662 POLG_BVDVC 271 435 SEQADV 4DW5 ARG A 1 UNP Q96662 EXPRESSION TAG SEQADV 4DW5 SER A 2 UNP Q96662 EXPRESSION TAG SEQADV 4DW5 ARG B 1 UNP Q96662 EXPRESSION TAG SEQADV 4DW5 SER B 2 UNP Q96662 EXPRESSION TAG SEQRES 1 A 167 ARG SER GLU ASN ILE THR GLN TRP ASN LEU GLN ASP ASN SEQRES 2 A 167 GLY THR GLU GLY ILE GLN ARG ALA MET PHE GLN ARG GLY SEQRES 3 A 167 VAL ASN ARG SER LEU HIS GLY ILE TRP PRO GLU LYS ILE SEQRES 4 A 167 CYS THR GLY VAL PRO SER HIS LEU ALA THR ASP THR GLU SEQRES 5 A 167 LEU LYS ALA ILE HIS GLY MET MET ASP ALA SER GLU LYS SEQRES 6 A 167 THR ASN TYR THR CYS CYS ARG LEU GLN ARG HIS GLU TRP SEQRES 7 A 167 ASN LYS HIS GLY TRP CYS ASN TRP TYR ASN ILE GLU PRO SEQRES 8 A 167 TRP ILE LEU LEU MET ASN LYS THR GLN ALA ASN LEU THR SEQRES 9 A 167 GLU GLY GLN PRO LEU ARG GLU CYS ALA VAL THR CYS ARG SEQRES 10 A 167 TYR ASP ARG ASP SER ASP LEU ASN VAL VAL THR GLN ALA SEQRES 11 A 167 ARG ASP SER PRO THR PRO LEU THR GLY CYS LYS LYS GLY SEQRES 12 A 167 LYS ASN PHE SER PHE ALA GLY ILE LEU VAL GLN GLY PRO SEQRES 13 A 167 CYS ASN PHE GLU ILE ALA VAL SER ASP VAL LEU SEQRES 1 B 167 ARG SER GLU ASN ILE THR GLN TRP ASN LEU GLN ASP ASN SEQRES 2 B 167 GLY THR GLU GLY ILE GLN ARG ALA MET PHE GLN ARG GLY SEQRES 3 B 167 VAL ASN ARG SER LEU HIS GLY ILE TRP PRO GLU LYS ILE SEQRES 4 B 167 CYS THR GLY VAL PRO SER HIS LEU ALA THR ASP THR GLU SEQRES 5 B 167 LEU LYS ALA ILE HIS GLY MET MET ASP ALA SER GLU LYS SEQRES 6 B 167 THR ASN TYR THR CYS CYS ARG LEU GLN ARG HIS GLU TRP SEQRES 7 B 167 ASN LYS HIS GLY TRP CYS ASN TRP TYR ASN ILE GLU PRO SEQRES 8 B 167 TRP ILE LEU LEU MET ASN LYS THR GLN ALA ASN LEU THR SEQRES 9 B 167 GLU GLY GLN PRO LEU ARG GLU CYS ALA VAL THR CYS ARG SEQRES 10 B 167 TYR ASP ARG ASP SER ASP LEU ASN VAL VAL THR GLN ALA SEQRES 11 B 167 ARG ASP SER PRO THR PRO LEU THR GLY CYS LYS LYS GLY SEQRES 12 B 167 LYS ASN PHE SER PHE ALA GLY ILE LEU VAL GLN GLY PRO SEQRES 13 B 167 CYS ASN PHE GLU ILE ALA VAL SER ASP VAL LEU MODRES 4DW5 ASN A 102 ASN GLYCOSYLATION SITE MODRES 4DW5 ASN B 4 ASN GLYCOSYLATION SITE MODRES 4DW5 ASN A 28 ASN GLYCOSYLATION SITE MODRES 4DW5 ASN A 4 ASN GLYCOSYLATION SITE MODRES 4DW5 ASN B 28 ASN GLYCOSYLATION SITE MODRES 4DW5 ASN B 97 ASN GLYCOSYLATION SITE MODRES 4DW5 ASN A 67 ASN GLYCOSYLATION SITE MODRES 4DW5 ASN B 102 ASN GLYCOSYLATION SITE MODRES 4DW5 ASN A 97 ASN GLYCOSYLATION SITE MODRES 4DW5 ASN B 13 ASN GLYCOSYLATION SITE MODRES 4DW5 ASN A 13 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET BMA C 4 11 HET BMA C 5 11 HET BMA C 6 11 HET NAG D 1 14 HET NAG D 2 14 HET NAG E 1 14 HET NAG E 2 14 HET NAG F 1 14 HET NAG F 2 14 HET BMA F 3 11 HET BMA F 4 11 HET BMA F 5 11 HET MAN F 6 11 HET BMA F 7 11 HET NAG G 1 14 HET NAG G 2 14 HET NAG A1107 14 HET NAG A1108 14 HET NAG A1113 14 HET SO4 A1114 5 HET SO4 A1115 5 HET SO4 A1116 5 HET CSQ A1117 37 HET CSV A1118 37 HET 1PE A1119 16 HET NAG B1110 14 HET NAG B1111 14 HET NAG B1112 14 HET SO4 B1113 5 HET SO4 B1114 5 HET SO4 B1115 5 HET U B1116 9 HET SO4 B1117 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM SO4 SULFATE ION HETNAM CSQ O-[(2R,3S,4R,5R)-5-(4-AMINO-2-OXOPYRIMIDIN-1(2H)-YL)-4- HETNAM 2 CSQ HYDROXY-2-(HYDROXYMETHYL)TETRAHYDROFURAN-3-YL] O- HETNAM 3 CSQ {[(2R,3S,4R,5R)-5-(2,4-DIOXO-3,4-DIHYDROPYRIMIDIN- HETNAM 4 CSQ 1(2H)-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL} HETNAM 5 CSQ HYDROGEN (R)-PHOSPHOROTHIOATE HETNAM CSV O-[(2R,3S,4R,5R)-5-(4-AMINO-2-OXOPYRIMIDIN-1(2H)-YL)-4- HETNAM 2 CSV HYDROXY-2-(HYDROXYMETHYL)TETRAHYDROFURAN-3-YL] O- HETNAM 3 CSV {[(2R,3S,4R,5R)-5-(2,4-DIOXO-3,4-DIHYDROPYRIMIDIN- HETNAM 4 CSV 1(2H)-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL} HETNAM 5 CSV HYDROGEN (S)-PHOSPHOROTHIOATE HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM U URIDINE-5'-MONOPHOSPHATE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN 1PE PEG400 FORMUL 3 NAG 16(C8 H15 N O6) FORMUL 3 BMA 8(C6 H12 O6) FORMUL 6 MAN C6 H12 O6 FORMUL 11 SO4 7(O4 S 2-) FORMUL 14 CSQ C18 H24 N5 O12 P S FORMUL 15 CSV C18 H24 N5 O12 P S FORMUL 16 1PE C10 H22 O6 FORMUL 23 U C9 H13 N2 O9 P FORMUL 25 HOH *180(H2 O) HELIX 1 1 GLY A 17 GLY A 26 1 10 HELIX 2 2 THR A 49 LYS A 54 1 6 HELIX 3 3 SER A 63 ASN A 67 5 5 HELIX 4 4 CYS A 71 GLY A 82 1 12 HELIX 5 5 GLY A 82 TYR A 87 1 6 HELIX 6 6 ASN A 88 GLY A 106 1 19 HELIX 7 7 GLY B 17 GLY B 26 1 10 HELIX 8 8 THR B 49 ALA B 55 1 7 HELIX 9 9 SER B 63 ASN B 67 5 5 HELIX 10 10 CYS B 71 GLY B 82 1 12 HELIX 11 11 GLY B 82 TYR B 87 1 6 HELIX 12 12 ASN B 88 GLY B 106 1 19 SHEET 1 A 5 ARG A 29 TRP A 35 0 SHEET 2 A 5 ILE A 5 LEU A 10 -1 N ILE A 5 O TRP A 35 SHEET 3 A 5 LEU A 124 ARG A 131 -1 O ALA A 130 N TRP A 8 SHEET 4 A 5 ASN A 145 PHE A 148 1 O ASN A 145 N ASN A 125 SHEET 5 A 5 ILE A 151 VAL A 153 -1 O ILE A 151 N PHE A 148 SHEET 1 B 5 ARG A 29 TRP A 35 0 SHEET 2 B 5 ILE A 5 LEU A 10 -1 N ILE A 5 O TRP A 35 SHEET 3 B 5 LEU A 124 ARG A 131 -1 O ALA A 130 N TRP A 8 SHEET 4 B 5 GLU A 111 ASP A 119 -1 N ASP A 119 O LEU A 124 SHEET 5 B 5 CYS A 157 ASN A 158 -1 O ASN A 158 N GLU A 111 SHEET 1 C 5 ARG B 29 TRP B 35 0 SHEET 2 C 5 ILE B 5 LEU B 10 -1 N ILE B 5 O TRP B 35 SHEET 3 C 5 LEU B 124 ARG B 131 -1 O ALA B 130 N TRP B 8 SHEET 4 C 5 ASN B 145 PHE B 148 1 O ASN B 145 N ASN B 125 SHEET 5 C 5 ILE B 151 VAL B 153 -1 O ILE B 151 N PHE B 148 SHEET 1 D 5 ARG B 29 TRP B 35 0 SHEET 2 D 5 ILE B 5 LEU B 10 -1 N ILE B 5 O TRP B 35 SHEET 3 D 5 LEU B 124 ARG B 131 -1 O ALA B 130 N TRP B 8 SHEET 4 D 5 GLU B 111 ASP B 119 -1 N CYS B 112 O ARG B 131 SHEET 5 D 5 CYS B 157 ASN B 158 -1 O ASN B 158 N GLU B 111 SSBOND 1 CYS A 40 CYS A 84 1555 1555 2.03 SSBOND 2 CYS A 70 CYS A 71 1555 1555 2.03 SSBOND 3 CYS A 112 CYS A 157 1555 1555 2.03 SSBOND 4 CYS A 116 CYS A 140 1555 1555 2.03 SSBOND 5 CYS B 40 CYS B 84 1555 1555 2.03 SSBOND 6 CYS B 70 CYS B 71 1555 1555 2.03 SSBOND 7 CYS B 112 CYS B 157 1555 1555 2.04 SSBOND 8 CYS B 116 CYS B 140 1555 1555 2.03 LINK ND2 ASN A 4 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN A 13 C1 NAG A1113 1555 1555 1.46 LINK ND2 ASN A 28 C1 NAG A1107 1555 1555 1.44 LINK ND2 ASN A 67 C1 NAG A1108 1555 1555 1.45 LINK ND2 ASN A 97 C1 NAG D 1 1555 1555 1.45 LINK ND2 ASN A 102 C1 NAG E 1 1555 1555 1.44 LINK ND2 ASN B 4 C1 NAG F 1 1555 1555 1.44 LINK ND2 ASN B 13 C1 NAG B1111 1555 1555 1.45 LINK ND2 ASN B 28 C1 NAG B1110 1555 1555 1.45 LINK ND2 ASN B 97 C1 NAG G 1 1555 1555 1.45 LINK ND2 ASN B 102 C1 NAG B1112 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.42 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.43 LINK O3 BMA C 3 C1 BMA C 4 1555 1555 1.44 LINK O6 BMA C 3 C1 BMA C 6 1555 1555 1.44 LINK O6 BMA C 4 C1 BMA C 5 1555 1555 1.43 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.43 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.43 LINK O4 NAG F 2 C1 BMA F 3 1555 1555 1.43 LINK O3 BMA F 3 C1 BMA F 4 1555 1555 1.45 LINK O6 BMA F 3 C1 MAN F 6 1555 1555 1.43 LINK O6 BMA F 4 C1 BMA F 5 1555 1555 1.43 LINK O3 MAN F 6 C1 BMA F 7 1555 1555 1.44 LINK O4 NAG G 1 C1 NAG G 2 1555 1555 1.44 CISPEP 1 CYS A 70 CYS A 71 0 7.10 CISPEP 2 CYS A 70 CYS A 71 0 7.14 CISPEP 3 PRO A 108 LEU A 109 0 2.48 CISPEP 4 CYS B 70 CYS B 71 0 10.33 CISPEP 5 CYS B 70 CYS B 71 0 2.61 CRYST1 105.340 105.340 211.260 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009493 0.005481 0.000000 0.00000 SCALE2 0.000000 0.010962 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004734 0.00000