HEADER PROTEIN BINDING 27-FEB-12 4DXA TITLE CO-CRYSTAL STRUCTURE OF RAP1 IN COMPLEX WITH KRIT1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAS-RELATED PROTEIN RAP-1B; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GTP-BINDING PROTEIN SMG P21B; COMPND 5 EC: 3.6.5.2; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: KREV INTERACTION TRAPPED PROTEIN 1; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: FERM DOMAIN; COMPND 12 SYNONYM: KREV INTERACTION TRAPPED 1, CEREBRAL CAVERNOUS MALFORMATIONS COMPND 13 1 PROTEIN; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: OK/SW-CL.11, RAP1B, RAS-RELATED PROTEIN RAP-1B (RAP1B); SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET-32; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: CCM1, KREV INTERACTION TRAPPED PROTEIN 1 (KRIT1), KRIT1; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PGEX 6P-1 KEYWDS GTPASE, FERM, PROTEIN-PROTEIN INTERACTION, GTP BINDING, CYTOPLASMIC, KEYWDS 2 PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR X.LI,R.ZHANG,T.J.BOGGON REVDAT 4 13-SEP-23 4DXA 1 REMARK SEQADV LINK REVDAT 3 25-JUL-12 4DXA 1 JRNL REVDAT 2 23-MAY-12 4DXA 1 JRNL REVDAT 1 16-MAY-12 4DXA 0 JRNL AUTH X.LI,R.ZHANG,K.M.DRAHEIM,W.LIU,D.A.CALDERWOOD,T.J.BOGGON JRNL TITL STRUCTURAL BASIS FOR SMALL G PROTEIN EFFECTOR INTERACTION OF JRNL TITL 2 RAS-RELATED PROTEIN 1 (RAP1) AND ADAPTOR PROTEIN KREV JRNL TITL 3 INTERACTION TRAPPED 1 (KRIT1). JRNL REF J.BIOL.CHEM. V. 287 22317 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22577140 JRNL DOI 10.1074/JBC.M112.361295 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.3_928 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.43 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 37384 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.180 REMARK 3 FREE R VALUE TEST SET COUNT : 1936 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.98 REMARK 3 K_SOL : 0.30 REMARK 3 B_SOL : 31.45 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.610 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.13150 REMARK 3 B22 (A**2) : 2.32460 REMARK 3 B33 (A**2) : 3.80680 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 7.68990 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 0:10) REMARK 3 ORIGIN FOR THE GROUP (A): 21.4713 19.4644 19.1400 REMARK 3 T TENSOR REMARK 3 T11: 0.3156 T22: 0.2513 REMARK 3 T33: 0.2789 T12: 0.0782 REMARK 3 T13: 0.0091 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 5.4306 L22: 7.7895 REMARK 3 L33: 8.0722 L12: -0.8849 REMARK 3 L13: 2.1125 L23: -7.4497 REMARK 3 S TENSOR REMARK 3 S11: 0.1048 S12: 0.0470 S13: 0.5846 REMARK 3 S21: -0.4951 S22: -0.5781 S23: -0.3110 REMARK 3 S31: 0.1034 S32: 0.5284 S33: 0.5160 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 11:36) REMARK 3 ORIGIN FOR THE GROUP (A): 31.2274 4.3413 22.8397 REMARK 3 T TENSOR REMARK 3 T11: 0.2952 T22: 0.3711 REMARK 3 T33: 0.5126 T12: 0.0703 REMARK 3 T13: 0.0502 T23: 0.1584 REMARK 3 L TENSOR REMARK 3 L11: 1.6618 L22: 2.2232 REMARK 3 L33: 8.2493 L12: 1.6268 REMARK 3 L13: 0.8634 L23: 1.3212 REMARK 3 S TENSOR REMARK 3 S11: -0.1648 S12: -0.2974 S13: -0.8874 REMARK 3 S21: -0.0440 S22: -0.1047 S23: -0.9391 REMARK 3 S31: 0.5738 S32: 0.5408 S33: 0.1507 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 37:58) REMARK 3 ORIGIN FOR THE GROUP (A): 24.1499 16.0195 15.6803 REMARK 3 T TENSOR REMARK 3 T11: 0.2662 T22: 0.3368 REMARK 3 T33: 0.2394 T12: 0.0110 REMARK 3 T13: 0.0268 T23: -0.0093 REMARK 3 L TENSOR REMARK 3 L11: 6.8348 L22: 4.5186 REMARK 3 L33: 8.1744 L12: -1.2420 REMARK 3 L13: 6.5884 L23: -1.7543 REMARK 3 S TENSOR REMARK 3 S11: 0.0036 S12: -0.3357 S13: 0.4759 REMARK 3 S21: -0.4043 S22: -0.3764 S23: -0.0499 REMARK 3 S31: 0.0903 S32: -0.5814 S33: 0.3870 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 59:74) REMARK 3 ORIGIN FOR THE GROUP (A): 28.3750 18.8537 34.2624 REMARK 3 T TENSOR REMARK 3 T11: 0.5245 T22: 0.9298 REMARK 3 T33: 0.4159 T12: -0.0095 REMARK 3 T13: -0.0645 T23: -0.0190 REMARK 3 L TENSOR REMARK 3 L11: 7.5066 L22: 2.7273 REMARK 3 L33: 6.7039 L12: 0.5170 REMARK 3 L13: -0.4605 L23: 4.1977 REMARK 3 S TENSOR REMARK 3 S11: -0.6980 S12: -1.8024 S13: 0.7624 REMARK 3 S21: 1.5858 S22: 0.1174 S23: -0.7659 REMARK 3 S31: 0.1577 S32: 1.2442 S33: 0.5948 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 75:116) REMARK 3 ORIGIN FOR THE GROUP (A): 17.3222 11.2427 33.1607 REMARK 3 T TENSOR REMARK 3 T11: 0.2577 T22: 0.4215 REMARK 3 T33: 0.2257 T12: -0.0558 REMARK 3 T13: 0.0281 T23: -0.0156 REMARK 3 L TENSOR REMARK 3 L11: 2.8741 L22: 8.0122 REMARK 3 L33: 4.1790 L12: 1.2610 REMARK 3 L13: -0.5999 L23: -1.1853 REMARK 3 S TENSOR REMARK 3 S11: 0.1581 S12: -0.7745 S13: 0.0393 REMARK 3 S21: 0.8316 S22: -0.2574 S23: 0.3121 REMARK 3 S31: -0.2160 S32: -0.1980 S33: 0.0933 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 117:167) REMARK 3 ORIGIN FOR THE GROUP (A): 14.9490 3.3238 25.2872 REMARK 3 T TENSOR REMARK 3 T11: 0.2216 T22: 0.2894 REMARK 3 T33: 0.2676 T12: -0.0609 REMARK 3 T13: -0.0117 T23: -0.0225 REMARK 3 L TENSOR REMARK 3 L11: 4.4706 L22: 7.5032 REMARK 3 L33: 4.3393 L12: 0.6292 REMARK 3 L13: -1.1489 L23: -1.8842 REMARK 3 S TENSOR REMARK 3 S11: -0.1471 S12: -0.0937 S13: -0.4653 REMARK 3 S21: -0.0116 S22: -0.1229 S23: 0.3882 REMARK 3 S31: 0.4290 S32: -0.2600 S33: 0.2393 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 419:486) REMARK 3 ORIGIN FOR THE GROUP (A): 47.4698 17.6906 21.2528 REMARK 3 T TENSOR REMARK 3 T11: 0.2145 T22: 0.2790 REMARK 3 T33: 0.2561 T12: 0.0340 REMARK 3 T13: -0.0189 T23: 0.0456 REMARK 3 L TENSOR REMARK 3 L11: 6.0642 L22: 3.3479 REMARK 3 L33: 4.6346 L12: 2.3543 REMARK 3 L13: -1.0593 L23: 0.9525 REMARK 3 S TENSOR REMARK 3 S11: 0.1045 S12: -0.4948 S13: -0.1640 REMARK 3 S21: 0.1782 S22: -0.1231 S23: -0.3007 REMARK 3 S31: 0.2685 S32: 0.1711 S33: -0.0035 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 487:524) REMARK 3 ORIGIN FOR THE GROUP (A): 49.3466 22.5926 11.9087 REMARK 3 T TENSOR REMARK 3 T11: 0.2057 T22: 0.2540 REMARK 3 T33: 0.1679 T12: 0.0499 REMARK 3 T13: -0.0040 T23: 0.0455 REMARK 3 L TENSOR REMARK 3 L11: 3.4339 L22: 5.5759 REMARK 3 L33: 3.7465 L12: 0.8926 REMARK 3 L13: -0.7889 L23: 2.6414 REMARK 3 S TENSOR REMARK 3 S11: 0.0034 S12: -0.3283 S13: 0.0143 REMARK 3 S21: -0.2106 S22: 0.0252 S23: -0.0899 REMARK 3 S31: -0.2021 S32: 0.2182 S33: -0.0260 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 525:541) REMARK 3 ORIGIN FOR THE GROUP (A): 38.6435 15.1479 6.2285 REMARK 3 T TENSOR REMARK 3 T11: 0.2645 T22: 0.1616 REMARK 3 T33: 0.2171 T12: -0.0008 REMARK 3 T13: 0.0359 T23: -0.0263 REMARK 3 L TENSOR REMARK 3 L11: 6.1954 L22: 5.3293 REMARK 3 L33: 7.7956 L12: -2.1623 REMARK 3 L13: 1.1594 L23: -4.7930 REMARK 3 S TENSOR REMARK 3 S11: -0.3306 S12: -0.0976 S13: 0.0102 REMARK 3 S21: 0.5466 S22: 0.0684 S23: 0.0008 REMARK 3 S31: -0.3418 S32: -0.1967 S33: 0.2321 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 542:629) REMARK 3 ORIGIN FOR THE GROUP (A): 28.8920 15.2439 -4.7701 REMARK 3 T TENSOR REMARK 3 T11: 0.2776 T22: 0.4027 REMARK 3 T33: 0.2412 T12: -0.0085 REMARK 3 T13: -0.0096 T23: -0.0138 REMARK 3 L TENSOR REMARK 3 L11: 6.9523 L22: 2.9120 REMARK 3 L33: 4.4122 L12: 0.6030 REMARK 3 L13: 0.5758 L23: 0.4657 REMARK 3 S TENSOR REMARK 3 S11: -0.0446 S12: 0.8660 S13: 0.0752 REMARK 3 S21: -0.2854 S22: -0.0079 S23: 0.4065 REMARK 3 S31: 0.0047 S32: -0.5829 S33: 0.0326 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 630:682) REMARK 3 ORIGIN FOR THE GROUP (A): 50.9923 26.7383 -2.6845 REMARK 3 T TENSOR REMARK 3 T11: 0.1970 T22: 0.2501 REMARK 3 T33: 0.2663 T12: -0.0234 REMARK 3 T13: 0.0225 T23: 0.0744 REMARK 3 L TENSOR REMARK 3 L11: 3.1225 L22: 5.5045 REMARK 3 L33: 3.4379 L12: 0.9774 REMARK 3 L13: -0.9669 L23: -0.0197 REMARK 3 S TENSOR REMARK 3 S11: -0.0765 S12: 0.3497 S13: 0.3904 REMARK 3 S21: -0.2715 S22: 0.2336 S23: 0.3088 REMARK 3 S31: -0.2277 S32: -0.0815 S33: -0.1613 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 683:701) REMARK 3 ORIGIN FOR THE GROUP (A): 65.2890 27.3187 -1.7250 REMARK 3 T TENSOR REMARK 3 T11: 0.3321 T22: 0.3810 REMARK 3 T33: 0.5076 T12: -0.0761 REMARK 3 T13: 0.1424 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 7.6101 L22: 6.6369 REMARK 3 L33: 7.4878 L12: 1.5126 REMARK 3 L13: 0.4376 L23: 1.2970 REMARK 3 S TENSOR REMARK 3 S11: 0.2631 S12: -0.0232 S13: 0.5262 REMARK 3 S21: -0.5793 S22: 0.1475 S23: -1.0708 REMARK 3 S31: -0.8578 S32: 1.1428 S33: -0.3799 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 702:729) REMARK 3 ORIGIN FOR THE GROUP (A): 62.0141 24.5566 -0.6715 REMARK 3 T TENSOR REMARK 3 T11: 0.2433 T22: 0.2849 REMARK 3 T33: 0.3140 T12: -0.0206 REMARK 3 T13: 0.0729 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 4.3896 L22: 6.6298 REMARK 3 L33: 4.6871 L12: 0.1233 REMARK 3 L13: -0.5590 L23: -2.6556 REMARK 3 S TENSOR REMARK 3 S11: 0.0193 S12: 0.3703 S13: 0.1213 REMARK 3 S21: -0.5849 S22: -0.0468 S23: -0.5801 REMARK 3 S31: -0.0032 S32: 0.4389 S33: -0.0089 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4DXA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1000070898. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37653 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08300 REMARK 200 FOR THE DATA SET : 15.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.88100 REMARK 200 FOR SHELL : 2.560 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1C1Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M KNO3, 20% PEG3350, PH 7.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.98500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 GLY B 415 REMARK 465 SER B 416 REMARK 465 PRO B 417 REMARK 465 GLU B 418 REMARK 465 SER B 611 REMARK 465 GLU B 612 REMARK 465 LYS B 647 REMARK 465 ALA B 648 REMARK 465 SER B 649 REMARK 465 PRO B 650 REMARK 465 SER B 651 REMARK 465 ASN B 652 REMARK 465 HIS B 653 REMARK 465 MET B 730 REMARK 465 PRO B 731 REMARK 465 THR B 732 REMARK 465 GLU B 733 REMARK 465 ARG B 734 REMARK 465 ASN B 735 REMARK 465 SER B 736 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 331 O HOH A 332 1.95 REMARK 500 O HOH A 351 O HOH A 400 1.96 REMARK 500 NH2 ARG B 426 O HOH B 863 1.97 REMARK 500 O3G GSP A 201 O HOH A 374 2.00 REMARK 500 O HOH A 385 O HOH A 393 2.00 REMARK 500 O HOH A 368 O HOH A 394 2.02 REMARK 500 O MET B 448 O HOH B 1007 2.12 REMARK 500 O HOH B 918 O HOH B 924 2.13 REMARK 500 O HOH B 827 O HOH B 916 2.14 REMARK 500 O ASP A 108 O HOH A 333 2.14 REMARK 500 O HOH B 900 O HOH B 932 2.14 REMARK 500 OD2 ASP A 47 O HOH A 328 2.14 REMARK 500 O HOH B 964 O HOH B 966 2.15 REMARK 500 O HOH B 905 O HOH B 927 2.15 REMARK 500 O HOH A 373 O HOH A 407 2.16 REMARK 500 NH1 ARG B 623 O HOH B 910 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 37 116.92 -172.53 REMARK 500 LYS A 117 34.15 72.01 REMARK 500 TRP A 138 49.20 -86.28 REMARK 500 PHE B 575 -62.62 -103.59 REMARK 500 SER B 592 -73.22 -83.55 REMARK 500 PRO B 595 4.60 -67.14 REMARK 500 ASP B 692 -74.07 -22.14 REMARK 500 ASP B 694 47.79 -74.92 REMARK 500 GLU B 703 -73.10 -85.52 REMARK 500 THR B 712 139.36 -172.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 THR A 35 OG1 74.1 REMARK 620 3 GSP A 201 O2B 86.7 159.0 REMARK 620 4 GSP A 201 O3G 165.6 91.6 107.3 REMARK 620 5 HOH A 381 O 85.1 86.0 101.2 94.9 REMARK 620 6 HOH A 382 O 84.2 88.3 81.1 94.7 169.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GSP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 202 DBREF 4DXA A 1 167 UNP P61224 RAP1B_HUMAN 1 167 DBREF 4DXA B 420 736 UNP O00522 KRIT1_HUMAN 420 736 SEQADV 4DXA GLY A -1 UNP P61224 EXPRESSION TAG SEQADV 4DXA SER A 0 UNP P61224 EXPRESSION TAG SEQADV 4DXA VAL A 12 UNP P61224 GLY 12 ENGINEERED MUTATION SEQADV 4DXA GLY B 415 UNP O00522 EXPRESSION TAG SEQADV 4DXA SER B 416 UNP O00522 EXPRESSION TAG SEQADV 4DXA PRO B 417 UNP O00522 EXPRESSION TAG SEQADV 4DXA GLU B 418 UNP O00522 EXPRESSION TAG SEQADV 4DXA PHE B 419 UNP O00522 EXPRESSION TAG SEQRES 1 A 169 GLY SER MET ARG GLU TYR LYS LEU VAL VAL LEU GLY SER SEQRES 2 A 169 VAL GLY VAL GLY LYS SER ALA LEU THR VAL GLN PHE VAL SEQRES 3 A 169 GLN GLY ILE PHE VAL GLU LYS TYR ASP PRO THR ILE GLU SEQRES 4 A 169 ASP SER TYR ARG LYS GLN VAL GLU VAL ASP ALA GLN GLN SEQRES 5 A 169 CYS MET LEU GLU ILE LEU ASP THR ALA GLY THR GLU GLN SEQRES 6 A 169 PHE THR ALA MET ARG ASP LEU TYR MET LYS ASN GLY GLN SEQRES 7 A 169 GLY PHE ALA LEU VAL TYR SER ILE THR ALA GLN SER THR SEQRES 8 A 169 PHE ASN ASP LEU GLN ASP LEU ARG GLU GLN ILE LEU ARG SEQRES 9 A 169 VAL LYS ASP THR ASP ASP VAL PRO MET ILE LEU VAL GLY SEQRES 10 A 169 ASN LYS CYS ASP LEU GLU ASP GLU ARG VAL VAL GLY LYS SEQRES 11 A 169 GLU GLN GLY GLN ASN LEU ALA ARG GLN TRP ASN ASN CYS SEQRES 12 A 169 ALA PHE LEU GLU SER SER ALA LYS SER LYS ILE ASN VAL SEQRES 13 A 169 ASN GLU ILE PHE TYR ASP LEU VAL ARG GLN ILE ASN ARG SEQRES 1 B 322 GLY SER PRO GLU PHE GLU LYS VAL ARG ILE TYR ARG MET SEQRES 2 B 322 ASP GLY SER TYR ARG SER VAL GLU LEU LYS HIS GLY ASN SEQRES 3 B 322 ASN THR THR VAL GLN GLN ILE MET GLU GLY MET ARG LEU SEQRES 4 B 322 SER GLN GLU THR GLN GLN TYR PHE THR ILE TRP ILE CYS SEQRES 5 B 322 SER GLU ASN LEU SER LEU GLN LEU LYS PRO TYR HIS LYS SEQRES 6 B 322 PRO LEU GLN HIS VAL ARG ASP TRP PRO GLU ILE LEU ALA SEQRES 7 B 322 GLU LEU THR ASN LEU ASP PRO GLN ARG GLU THR PRO GLN SEQRES 8 B 322 LEU PHE LEU ARG ARG ASP VAL ARG LEU PRO LEU GLU VAL SEQRES 9 B 322 GLU LYS GLN ILE GLU ASP PRO LEU ALA ILE LEU ILE LEU SEQRES 10 B 322 PHE ASP GLU ALA ARG TYR ASN LEU LEU LYS GLY PHE TYR SEQRES 11 B 322 THR ALA PRO ASP ALA LYS LEU ILE THR LEU ALA SER LEU SEQRES 12 B 322 LEU LEU GLN ILE VAL TYR GLY ASN TYR GLU SER LYS LYS SEQRES 13 B 322 HIS LYS GLN GLY PHE LEU ASN GLU GLU ASN LEU LYS SER SEQRES 14 B 322 ILE VAL PRO VAL THR LYS LEU LYS SER LYS ALA PRO HIS SEQRES 15 B 322 TRP THR ASN ARG ILE LEU HIS GLU TYR LYS ASN LEU SER SEQRES 16 B 322 THR SER GLU GLY VAL SER LYS GLU MET HIS HIS LEU GLN SEQRES 17 B 322 ARG MET PHE LEU GLN ASN CYS TRP GLU ILE PRO THR TYR SEQRES 18 B 322 GLY ALA ALA PHE PHE THR GLY GLN ILE PHE THR LYS ALA SEQRES 19 B 322 SER PRO SER ASN HIS LYS VAL ILE PRO VAL TYR VAL GLY SEQRES 20 B 322 VAL ASN ILE LYS GLY LEU HIS LEU LEU ASN MET GLU THR SEQRES 21 B 322 LYS ALA LEU LEU ILE SER LEU LYS TYR GLY CYS PHE MET SEQRES 22 B 322 TRP GLN LEU GLY ASP THR ASP THR CYS PHE GLN ILE HIS SEQRES 23 B 322 SER MET GLU ASN LYS MET SER PHE ILE VAL HIS THR LYS SEQRES 24 B 322 GLN ALA GLY LEU VAL VAL LYS LEU LEU MET LYS LEU ASN SEQRES 25 B 322 GLY GLN LEU MET PRO THR GLU ARG ASN SER HET GSP A 201 32 HET MG A 202 1 HETNAM GSP 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 GSP C10 H16 N5 O13 P3 S FORMUL 4 MG MG 2+ FORMUL 5 HOH *327(H2 O) HELIX 1 1 GLY A 15 GLY A 26 1 12 HELIX 2 2 PHE A 64 GLY A 75 1 12 HELIX 3 3 ALA A 86 ASP A 92 1 7 HELIX 4 4 ASP A 92 ASP A 105 1 14 HELIX 5 5 LEU A 120 ARG A 124 5 5 HELIX 6 6 GLY A 127 TRP A 138 1 12 HELIX 7 7 ASN A 153 ARG A 167 1 15 HELIX 8 8 HIS B 438 THR B 442 5 5 HELIX 9 9 THR B 443 GLU B 449 1 7 HELIX 10 10 GLU B 456 GLN B 459 5 4 HELIX 11 11 LYS B 479 ASP B 486 1 8 HELIX 12 12 ASP B 486 THR B 495 1 10 HELIX 13 13 PRO B 515 LYS B 520 1 6 HELIX 14 14 ASP B 524 GLY B 542 1 19 HELIX 15 15 PRO B 547 GLY B 564 1 18 HELIX 16 16 GLU B 567 LYS B 572 1 6 HELIX 17 17 ASN B 577 LYS B 582 1 6 HELIX 18 18 LYS B 593 HIS B 596 5 4 HELIX 19 19 TRP B 597 THR B 610 1 14 HELIX 20 20 GLU B 617 GLU B 631 1 15 HELIX 21 21 GLN B 714 GLN B 728 1 15 SHEET 1 A11 ALA A 142 GLU A 145 0 SHEET 2 A11 MET A 111 ASN A 116 1 N GLY A 115 O LEU A 144 SHEET 3 A11 GLY A 77 SER A 83 1 N TYR A 82 O ASN A 116 SHEET 4 A11 ARG A 2 GLY A 10 1 N LEU A 9 O ALA A 79 SHEET 5 A11 GLN A 49 THR A 58 1 O GLU A 54 N LEU A 6 SHEET 6 A11 GLU A 37 VAL A 46 -1 N VAL A 44 O CYS A 51 SHEET 7 A11 TYR B 431 GLU B 435 -1 O TYR B 431 N SER A 39 SHEET 8 A11 LYS B 421 TYR B 425 -1 N VAL B 422 O VAL B 434 SHEET 9 A11 GLN B 505 ARG B 510 1 O LEU B 506 N TYR B 425 SHEET 10 A11 PHE B 461 CYS B 466 -1 N CYS B 466 O GLN B 505 SHEET 11 A11 SER B 471 GLN B 473 -1 O LEU B 472 N ILE B 465 SHEET 1 B 4 ALA B 638 ILE B 644 0 SHEET 2 B 4 ILE B 656 VAL B 662 -1 O ILE B 656 N ILE B 644 SHEET 3 B 4 GLY B 666 ASN B 671 -1 O HIS B 668 N GLY B 661 SHEET 4 B 4 LEU B 677 LYS B 682 -1 O LEU B 678 N LEU B 669 SHEET 1 C 3 PHE B 686 LEU B 690 0 SHEET 2 C 3 CYS B 696 SER B 701 -1 O GLN B 698 N GLN B 689 SHEET 3 C 3 SER B 707 HIS B 711 -1 O PHE B 708 N ILE B 699 LINK OG SER A 17 MG MG A 202 1555 1555 2.52 LINK OG1 THR A 35 MG MG A 202 1555 1555 2.50 LINK O2B GSP A 201 MG MG A 202 1555 1555 2.37 LINK O3G GSP A 201 MG MG A 202 1555 1555 2.46 LINK MG MG A 202 O HOH A 381 1555 1555 2.49 LINK MG MG A 202 O HOH A 382 1555 1555 2.55 SITE 1 AC1 26 VAL A 12 GLY A 13 VAL A 14 GLY A 15 SITE 2 AC1 26 LYS A 16 SER A 17 ALA A 18 PHE A 28 SITE 3 AC1 26 VAL A 29 GLU A 30 TYR A 32 THR A 35 SITE 4 AC1 26 GLY A 60 ASN A 116 LYS A 117 ASP A 119 SITE 5 AC1 26 LEU A 120 SER A 147 ALA A 148 LYS A 149 SITE 6 AC1 26 MG A 202 HOH A 316 HOH A 354 HOH A 374 SITE 7 AC1 26 HOH A 382 HOH A 386 SITE 1 AC2 5 SER A 17 THR A 35 GSP A 201 HOH A 381 SITE 2 AC2 5 HOH A 382 CRYST1 57.548 77.970 59.757 90.00 90.93 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017377 0.000000 0.000283 0.00000 SCALE2 0.000000 0.012825 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016737 0.00000