data_4DZN # _entry.id 4DZN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4DZN RCSB RCSB070983 WWPDB D_1000070983 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4DZK . unspecified PDB 4DZL . unspecified PDB 4DZM . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4DZN _pdbx_database_status.recvd_initial_deposition_date 2012-03-01 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Bruning, M.' 1 'Thomson, A.R.' 2 'Zaccai, N.R.' 3 'Brady, R.L.' 4 'Woolfson, D.N.' 5 # _citation.id primary _citation.title 'A basis set of de novo coiled-coil Peptide oligomers for rational protein design and synthetic biology.' _citation.journal_abbrev 'ACS Synth Biol' _citation.journal_volume 1 _citation.page_first 240 _citation.page_last 250 _citation.year 2012 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 2161-5063 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23651206 _citation.pdbx_database_id_DOI 10.1021/sb300028q # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Fletcher, J.M.' 1 primary 'Boyle, A.L.' 2 primary 'Bruning, M.' 3 primary 'Bartlett, G.J.' 4 primary 'Vincent, T.L.' 5 primary 'Zaccai, N.R.' 6 primary 'Armstrong, C.T.' 7 primary 'Bromley, E.H.' 8 primary 'Booth, P.J.' 9 primary 'Brady, R.L.' 10 primary 'Thomson, A.R.' 11 primary 'Woolfson, D.N.' 12 # _cell.entry_id 4DZN _cell.length_a 24.723 _cell.length_b 40.943 _cell.length_c 87.430 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4DZN _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'COILED-COIL PEPTIDE CC-PIL' 3650.072 3 ? ? ? ? 2 water nat water 18.015 78 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(ACE)GEIAALKQEIAALKKEIAALK(PHI)EIAALKQGYY' _entity_poly.pdbx_seq_one_letter_code_can XGEIAALKQEIAALKKEIAALKFEIAALKQGYY _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ACE n 1 2 GLY n 1 3 GLU n 1 4 ILE n 1 5 ALA n 1 6 ALA n 1 7 LEU n 1 8 LYS n 1 9 GLN n 1 10 GLU n 1 11 ILE n 1 12 ALA n 1 13 ALA n 1 14 LEU n 1 15 LYS n 1 16 LYS n 1 17 GLU n 1 18 ILE n 1 19 ALA n 1 20 ALA n 1 21 LEU n 1 22 LYS n 1 23 PHI n 1 24 GLU n 1 25 ILE n 1 26 ALA n 1 27 ALA n 1 28 LEU n 1 29 LYS n 1 30 GLN n 1 31 GLY n 1 32 TYR n 1 33 TYR n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details 'Solid state peptide synthesis' # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4DZN _struct_ref.pdbx_db_accession 4DZN _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code '(ACE)GEIAALKQEIAALKKEIAALK(PHI)EIAALKQGYY' _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4DZN A 1 ? 33 ? 4DZN 0 ? 32 ? 0 32 2 1 4DZN B 1 ? 33 ? 4DZN 0 ? 32 ? 0 32 3 1 4DZN C 1 ? 33 ? 4DZN 0 ? 32 ? 0 32 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHI 'L-peptide linking' n IODO-PHENYLALANINE ? 'C9 H10 I N O2' 291.086 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # _exptl.entry_id 4DZN _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.02 _exptl_crystal.density_percent_sol 39.12 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details '0.2 M NH4H2PO4, 0.1 M Tris, 50% v/v MPD, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2010-10-10 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.7 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I04' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I04 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.7 # _reflns.entry_id 4DZN _reflns.observed_criterion_sigma_I 4.6 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 43.72 _reflns.d_resolution_high 1.59 _reflns.number_obs 11991 _reflns.number_all ? _reflns.percent_possible_obs 96.1 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.6 _reflns_shell.d_res_low 1.7 _reflns_shell.percent_possible_all 95.4 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4DZN _refine.ls_number_reflns_obs 11348 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 43.72 _refine.ls_d_res_high 1.59 _refine.ls_percent_reflns_obs 95.44 _refine.ls_R_factor_obs 0.15714 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.15506 _refine.ls_R_factor_R_free 0.19844 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 573 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.958 _refine.correlation_coeff_Fo_to_Fc_free 0.950 _refine.B_iso_mean 12.405 _refine.aniso_B[1][1] 0.14 _refine.aniso_B[2][2] 0.78 _refine.aniso_B[3][3] -0.92 _refine.aniso_B[1][2] -0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] -0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'AB INITIO PHASING+MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.117 _refine.pdbx_overall_ESU_R_Free 0.088 _refine.overall_SU_ML 0.053 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 3.392 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 750 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 78 _refine_hist.number_atoms_total 828 _refine_hist.d_res_high 1.59 _refine_hist.d_res_low 43.72 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.012 0.022 ? 754 ? 'X-RAY DIFFRACTION' r_bond_other_d 0.001 0.020 ? 515 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.115 2.064 ? 1006 ? 'X-RAY DIFFRACTION' r_angle_other_deg 0.817 3.000 ? 1277 ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 3.258 5.000 ? 93 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 31.114 27.500 ? 24 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 14.062 15.000 ? 148 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_chiral_restr 0.054 0.200 ? 114 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.005 0.020 ? 795 ? 'X-RAY DIFFRACTION' r_gen_planes_other 0.001 0.020 ? 129 ? 'X-RAY DIFFRACTION' r_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_it 4.877 8.000 ? 480 ? 'X-RAY DIFFRACTION' r_mcbond_other 1.875 8.000 ? 198 ? 'X-RAY DIFFRACTION' r_mcangle_it 6.011 12.000 ? 740 ? 'X-RAY DIFFRACTION' r_scbond_it 9.928 16.000 ? 274 ? 'X-RAY DIFFRACTION' r_scangle_it 13.226 24.000 ? 266 ? 'X-RAY DIFFRACTION' r_rigid_bond_restr 2.526 3.000 ? 1266 ? 'X-RAY DIFFRACTION' r_sphericity_free ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded ? ? ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.593 _refine_ls_shell.d_res_low 1.634 _refine_ls_shell.number_reflns_R_work 800 _refine_ls_shell.R_factor_R_work 0.213 _refine_ls_shell.percent_reflns_obs 94.35 _refine_ls_shell.R_factor_R_free 0.253 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 52 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4DZN _struct.title 'A de novo designed Coiled Coil CC-pIL' _struct.pdbx_descriptor Peptide _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4DZN _struct_keywords.pdbx_keywords 'DE NOVO PROTEIN' _struct_keywords.text 'DE NOVO PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 2 ? F N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 2 ? TYR A 33 ? GLY A 1 TYR A 32 1 ? 32 HELX_P HELX_P2 2 GLY B 2 ? TYR B 33 ? GLY B 1 TYR B 32 1 ? 32 HELX_P HELX_P3 3 GLY C 2 ? GLN C 30 ? GLY C 1 GLN C 29 1 ? 29 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ACE 1 C ? ? ? 1_555 A GLY 2 N ? ? A ACE 0 A GLY 1 1_555 ? ? ? ? ? ? ? 1.341 ? covale2 covale ? ? A LYS 22 C ? ? ? 1_555 A PHI 23 N ? ? A LYS 21 A PHI 22 1_555 ? ? ? ? ? ? ? 1.337 ? covale3 covale ? ? A PHI 23 C ? ? ? 1_555 A GLU 24 N ? ? A PHI 22 A GLU 23 1_555 ? ? ? ? ? ? ? 1.336 ? covale4 covale ? ? B ACE 1 C ? ? ? 1_555 B GLY 2 N ? ? B ACE 0 B GLY 1 1_555 ? ? ? ? ? ? ? 1.337 ? covale5 covale ? ? B LYS 22 C ? ? ? 1_555 B PHI 23 N ? ? B LYS 21 B PHI 22 1_555 ? ? ? ? ? ? ? 1.322 ? covale6 covale ? ? B PHI 23 C ? ? ? 1_555 B GLU 24 N ? ? B PHI 22 B GLU 23 1_555 ? ? ? ? ? ? ? 1.319 ? covale7 covale ? ? C ACE 1 C ? ? ? 1_555 C GLY 2 N ? ? C ACE 0 C GLY 1 1_555 ? ? ? ? ? ? ? 1.320 ? covale8 covale ? ? C LYS 22 C ? ? ? 1_555 C PHI 23 N ? ? C LYS 21 C PHI 22 1_555 ? ? ? ? ? ? ? 1.329 ? covale9 covale ? ? C PHI 23 C ? ? ? 1_555 C GLU 24 N ? ? C PHI 22 C GLU 23 1_555 ? ? ? ? ? ? ? 1.329 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 4DZN _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4DZN _atom_sites.fract_transf_matrix[1][1] 0.040448 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024424 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011438 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C I N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ACE 1 0 0 ACE ACE A . n A 1 2 GLY 2 1 1 GLY GLY A . n A 1 3 GLU 3 2 2 GLU GLU A . n A 1 4 ILE 4 3 3 ILE ILE A . n A 1 5 ALA 5 4 4 ALA ALA A . n A 1 6 ALA 6 5 5 ALA ALA A . n A 1 7 LEU 7 6 6 LEU LEU A . n A 1 8 LYS 8 7 7 LYS LYS A . n A 1 9 GLN 9 8 8 GLN GLN A . n A 1 10 GLU 10 9 9 GLU GLU A . n A 1 11 ILE 11 10 10 ILE ILE A . n A 1 12 ALA 12 11 11 ALA ALA A . n A 1 13 ALA 13 12 12 ALA ALA A . n A 1 14 LEU 14 13 13 LEU LEU A . n A 1 15 LYS 15 14 14 LYS LYS A . n A 1 16 LYS 16 15 15 LYS LYS A . n A 1 17 GLU 17 16 16 GLU GLU A . n A 1 18 ILE 18 17 17 ILE ILE A . n A 1 19 ALA 19 18 18 ALA ALA A . n A 1 20 ALA 20 19 19 ALA ALA A . n A 1 21 LEU 21 20 20 LEU LEU A . n A 1 22 LYS 22 21 21 LYS LYS A . n A 1 23 PHI 23 22 22 PHI PHI A . n A 1 24 GLU 24 23 23 GLU GLU A . n A 1 25 ILE 25 24 24 ILE ILE A . n A 1 26 ALA 26 25 25 ALA ALA A . n A 1 27 ALA 27 26 26 ALA ALA A . n A 1 28 LEU 28 27 27 LEU LEU A . n A 1 29 LYS 29 28 28 LYS LYS A . n A 1 30 GLN 30 29 29 GLN GLN A . n A 1 31 GLY 31 30 30 GLY GLY A . n A 1 32 TYR 32 31 31 TYR TYR A . n A 1 33 TYR 33 32 32 TYR TYR A . n B 1 1 ACE 1 0 0 ACE ACE B . n B 1 2 GLY 2 1 1 GLY GLY B . n B 1 3 GLU 3 2 2 GLU GLU B . n B 1 4 ILE 4 3 3 ILE ILE B . n B 1 5 ALA 5 4 4 ALA ALA B . n B 1 6 ALA 6 5 5 ALA ALA B . n B 1 7 LEU 7 6 6 LEU LEU B . n B 1 8 LYS 8 7 7 LYS LYS B . n B 1 9 GLN 9 8 8 GLN GLN B . n B 1 10 GLU 10 9 9 GLU GLU B . n B 1 11 ILE 11 10 10 ILE ILE B . n B 1 12 ALA 12 11 11 ALA ALA B . n B 1 13 ALA 13 12 12 ALA ALA B . n B 1 14 LEU 14 13 13 LEU LEU B . n B 1 15 LYS 15 14 14 LYS LYS B . n B 1 16 LYS 16 15 15 LYS LYS B . n B 1 17 GLU 17 16 16 GLU GLU B . n B 1 18 ILE 18 17 17 ILE ILE B . n B 1 19 ALA 19 18 18 ALA ALA B . n B 1 20 ALA 20 19 19 ALA ALA B . n B 1 21 LEU 21 20 20 LEU LEU B . n B 1 22 LYS 22 21 21 LYS LYS B . n B 1 23 PHI 23 22 22 PHI PHI B . n B 1 24 GLU 24 23 23 GLU GLU B . n B 1 25 ILE 25 24 24 ILE ILE B . n B 1 26 ALA 26 25 25 ALA ALA B . n B 1 27 ALA 27 26 26 ALA ALA B . n B 1 28 LEU 28 27 27 LEU LEU B . n B 1 29 LYS 29 28 28 LYS LYS B . n B 1 30 GLN 30 29 29 GLN GLN B . n B 1 31 GLY 31 30 30 GLY GLY B . n B 1 32 TYR 32 31 31 TYR TYR B . n B 1 33 TYR 33 32 32 TYR TYR B . n C 1 1 ACE 1 0 0 ACE ACE C . n C 1 2 GLY 2 1 1 GLY GLY C . n C 1 3 GLU 3 2 2 GLU GLU C . n C 1 4 ILE 4 3 3 ILE ILE C . n C 1 5 ALA 5 4 4 ALA ALA C . n C 1 6 ALA 6 5 5 ALA ALA C . n C 1 7 LEU 7 6 6 LEU LEU C . n C 1 8 LYS 8 7 7 LYS LYS C . n C 1 9 GLN 9 8 8 GLN GLN C . n C 1 10 GLU 10 9 9 GLU GLU C . n C 1 11 ILE 11 10 10 ILE ILE C . n C 1 12 ALA 12 11 11 ALA ALA C . n C 1 13 ALA 13 12 12 ALA ALA C . n C 1 14 LEU 14 13 13 LEU LEU C . n C 1 15 LYS 15 14 14 LYS LYS C . n C 1 16 LYS 16 15 15 LYS LYS C . n C 1 17 GLU 17 16 16 GLU GLU C . n C 1 18 ILE 18 17 17 ILE ILE C . n C 1 19 ALA 19 18 18 ALA ALA C . n C 1 20 ALA 20 19 19 ALA ALA C . n C 1 21 LEU 21 20 20 LEU LEU C . n C 1 22 LYS 22 21 21 LYS LYS C . n C 1 23 PHI 23 22 22 PHI PHI C . n C 1 24 GLU 24 23 23 GLU GLU C . n C 1 25 ILE 25 24 24 ILE ILE C . n C 1 26 ALA 26 25 25 ALA ALA C . n C 1 27 ALA 27 26 26 ALA ALA C . n C 1 28 LEU 28 27 27 LEU LEU C . n C 1 29 LYS 29 28 28 LYS LYS C . n C 1 30 GLN 30 29 29 GLN GLN C . n C 1 31 GLY 31 30 30 GLY GLY C . n C 1 32 TYR 32 31 31 TYR TYR C . n C 1 33 TYR 33 32 32 TYR TYR C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 HOH 1 101 1 HOH HOH A . D 2 HOH 2 102 4 HOH HOH A . D 2 HOH 3 103 5 HOH HOH A . D 2 HOH 4 104 6 HOH HOH A . D 2 HOH 5 105 9 HOH HOH A . D 2 HOH 6 106 12 HOH HOH A . D 2 HOH 7 107 14 HOH HOH A . D 2 HOH 8 108 16 HOH HOH A . D 2 HOH 9 109 17 HOH HOH A . D 2 HOH 10 110 19 HOH HOH A . D 2 HOH 11 111 22 HOH HOH A . D 2 HOH 12 112 24 HOH HOH A . D 2 HOH 13 113 31 HOH HOH A . D 2 HOH 14 114 34 HOH HOH A . D 2 HOH 15 115 36 HOH HOH A . D 2 HOH 16 116 37 HOH HOH A . D 2 HOH 17 117 40 HOH HOH A . D 2 HOH 18 118 45 HOH HOH A . D 2 HOH 19 119 52 HOH HOH A . D 2 HOH 20 120 56 HOH HOH A . D 2 HOH 21 121 59 HOH HOH A . D 2 HOH 22 122 63 HOH HOH A . D 2 HOH 23 123 69 HOH HOH A . D 2 HOH 24 124 71 HOH HOH A . D 2 HOH 25 125 72 HOH HOH A . D 2 HOH 26 126 76 HOH HOH A . D 2 HOH 27 127 79 HOH HOH A . D 2 HOH 28 128 81 HOH HOH A . D 2 HOH 29 129 82 HOH HOH A . D 2 HOH 30 130 83 HOH HOH A . D 2 HOH 31 131 84 HOH HOH A . D 2 HOH 32 132 85 HOH HOH A . E 2 HOH 1 101 3 HOH HOH B . E 2 HOH 2 102 10 HOH HOH B . E 2 HOH 3 103 13 HOH HOH B . E 2 HOH 4 104 15 HOH HOH B . E 2 HOH 5 105 18 HOH HOH B . E 2 HOH 6 106 30 HOH HOH B . E 2 HOH 7 107 33 HOH HOH B . E 2 HOH 8 108 35 HOH HOH B . E 2 HOH 9 109 39 HOH HOH B . E 2 HOH 10 110 50 HOH HOH B . E 2 HOH 11 111 53 HOH HOH B . E 2 HOH 12 112 54 HOH HOH B . E 2 HOH 13 113 57 HOH HOH B . E 2 HOH 14 114 61 HOH HOH B . E 2 HOH 15 115 74 HOH HOH B . E 2 HOH 16 116 88 HOH HOH B . E 2 HOH 17 117 89 HOH HOH B . F 2 HOH 1 101 2 HOH HOH C . F 2 HOH 2 102 7 HOH HOH C . F 2 HOH 3 103 8 HOH HOH C . F 2 HOH 4 104 11 HOH HOH C . F 2 HOH 5 105 20 HOH HOH C . F 2 HOH 6 106 21 HOH HOH C . F 2 HOH 7 107 25 HOH HOH C . F 2 HOH 8 108 26 HOH HOH C . F 2 HOH 9 109 27 HOH HOH C . F 2 HOH 10 110 28 HOH HOH C . F 2 HOH 11 111 29 HOH HOH C . F 2 HOH 12 112 32 HOH HOH C . F 2 HOH 13 113 38 HOH HOH C . F 2 HOH 14 114 41 HOH HOH C . F 2 HOH 15 115 42 HOH HOH C . F 2 HOH 16 116 47 HOH HOH C . F 2 HOH 17 117 64 HOH HOH C . F 2 HOH 18 118 66 HOH HOH C . F 2 HOH 19 119 67 HOH HOH C . F 2 HOH 20 120 70 HOH HOH C . F 2 HOH 21 121 73 HOH HOH C . F 2 HOH 22 122 75 HOH HOH C . F 2 HOH 23 123 77 HOH HOH C . F 2 HOH 24 124 78 HOH HOH C . F 2 HOH 25 125 80 HOH HOH C . F 2 HOH 26 126 86 HOH HOH C . F 2 HOH 27 127 87 HOH HOH C . F 2 HOH 28 128 90 HOH HOH C . F 2 HOH 29 129 91 HOH HOH C . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A PHI 23 A PHI 22 ? PHE IODO-PHENYLALANINE 2 B PHI 23 B PHI 22 ? PHE IODO-PHENYLALANINE 3 C PHI 23 C PHI 22 ? PHE IODO-PHENYLALANINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4100 ? 1 MORE -38 ? 1 'SSA (A^2)' 6760 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-08-29 2 'Structure model' 1 1 2013-06-19 3 'Structure model' 1 2 2017-11-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Refinement description' 4 3 'Structure model' 'Source and taxonomy' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_entity_src_syn 2 3 'Structure model' pdbx_unobs_or_zero_occ_atoms 3 3 'Structure model' software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_pdbx_entity_src_syn.ncbi_taxonomy_id' 2 3 'Structure model' '_pdbx_entity_src_syn.organism_scientific' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ACORN phasing . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.5.0109 ? 3 MOSFLM 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CB _pdbx_validate_rmsd_bond.auth_asym_id_1 C _pdbx_validate_rmsd_bond.auth_comp_id_1 LEU _pdbx_validate_rmsd_bond.auth_seq_id_1 6 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CG _pdbx_validate_rmsd_bond.auth_asym_id_2 C _pdbx_validate_rmsd_bond.auth_comp_id_2 LEU _pdbx_validate_rmsd_bond.auth_seq_id_2 6 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.230 _pdbx_validate_rmsd_bond.bond_target_value 1.521 _pdbx_validate_rmsd_bond.bond_deviation -0.291 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.029 _pdbx_validate_rmsd_bond.linker_flag N # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #