HEADER PROTEIN FIBRIL 04-MAR-12 4E0L TITLE FYLLYYT SEGMENT FROM HUMAN BETA 2 MICROGLOBULIN (62-68) DISPLAYED ON TITLE 2 54-MEMBERED MACROCYCLE SCAFFOLD COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLIC PSEUDO-PEPTIDE FYLLYYT(ORN)KN(HAO)SA(ORN); COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: SYNTHETIC MOLECULE KEYWDS AMYLOID, OUT-OF-REGISTER, FIBER-FORMING, MACROCYCLE, PROTEIN FIBRIL EXPDTA X-RAY DIFFRACTION AUTHOR M.ZHAO,C.LIU,S.R.MICHAEL,D.EISENBERG REVDAT 4 15-NOV-23 4E0L 1 REMARK LINK ATOM REVDAT 3 20-SEP-17 4E0L 1 REMARK REVDAT 2 19-JUN-13 4E0L 1 JRNL REVDAT 1 19-DEC-12 4E0L 0 JRNL AUTH C.LIU,M.ZHAO,L.JIANG,P.N.CHENG,J.PARK,M.R.SAWAYA, JRNL AUTH 2 A.PENSALFINI,D.GOU,A.J.BERK,C.G.GLABE,J.NOWICK,D.EISENBERG JRNL TITL OUT-OF-REGISTER BETA-SHEETS SUGGEST A PATHWAY TO TOXIC JRNL TITL 2 AMYLOID AGGREGATES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 20913 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 23213214 JRNL DOI 10.1073/PNAS.1218792109 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.1 REMARK 3 NUMBER OF REFLECTIONS : 6471 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 648 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 5 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.90 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.09 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 1586 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1959 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1445 REMARK 3 BIN R VALUE (WORKING SET) : 0.1937 REMARK 3 BIN FREE R VALUE : 0.2188 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 8.89 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 141 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 524 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 16 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.51 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.15240 REMARK 3 B22 (A**2) : -0.47990 REMARK 3 B33 (A**2) : 0.32740 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.05630 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.256 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.146 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.917 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.893 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 558 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 684 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 152 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 4 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 60 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 558 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : NULL ; NULL ; NULL REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : NULL ; NULL ; NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.96 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : NULL REMARK 3 OTHER TORSION ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: A 0 A 13 REMARK 3 ORIGIN FOR THE GROUP (A): 12.2957 0.4918 10.0964 REMARK 3 T TENSOR REMARK 3 T11: 0.1433 T22: -0.0596 REMARK 3 T33: -0.0692 T12: 0.0324 REMARK 3 T13: 0.0062 T23: 0.0498 REMARK 3 L TENSOR REMARK 3 L11: 0.0900 L22: 0.5945 REMARK 3 L33: 0.4326 L12: -0.8402 REMARK 3 L13: -0.3255 L23: 0.4678 REMARK 3 S TENSOR REMARK 3 S11: 0.0041 S12: -0.0004 S13: -0.0101 REMARK 3 S21: 0.0401 S22: 0.0051 S23: 0.0728 REMARK 3 S31: -0.0117 S32: -0.0539 S33: -0.0092 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: B 0 B 13 REMARK 3 ORIGIN FOR THE GROUP (A): 19.7556 0.1634 4.7258 REMARK 3 T TENSOR REMARK 3 T11: 0.1086 T22: -0.0499 REMARK 3 T33: -0.0531 T12: 0.0142 REMARK 3 T13: 0.0073 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 0.6084 L22: 1.7169 REMARK 3 L33: 0.1939 L12: -0.2729 REMARK 3 L13: -0.3761 L23: -0.3891 REMARK 3 S TENSOR REMARK 3 S11: 0.0048 S12: -0.0080 S13: 0.0139 REMARK 3 S21: -0.0272 S22: 0.0061 S23: -0.0071 REMARK 3 S31: -0.0182 S32: 0.0670 S33: -0.0109 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: C 0 C 13 REMARK 3 ORIGIN FOR THE GROUP (A): 19.6394 -7.8136 -0.9761 REMARK 3 T TENSOR REMARK 3 T11: 0.0864 T22: -0.0630 REMARK 3 T33: -0.0176 T12: 0.0186 REMARK 3 T13: 0.0292 T23: -0.0418 REMARK 3 L TENSOR REMARK 3 L11: -0.1134 L22: 0.0138 REMARK 3 L33: 0.7668 L12: -0.6639 REMARK 3 L13: 0.3678 L23: -0.5412 REMARK 3 S TENSOR REMARK 3 S11: 0.0032 S12: -0.0252 S13: -0.0070 REMARK 3 S21: 0.0155 S22: 0.0132 S23: -0.0523 REMARK 3 S31: -0.0038 S32: 0.0068 S33: -0.0164 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: D 0 D 13 REMARK 3 ORIGIN FOR THE GROUP (A): 14.1546 -7.5871 -8.2623 REMARK 3 T TENSOR REMARK 3 T11: 0.0975 T22: -0.0462 REMARK 3 T33: -0.0410 T12: 0.0203 REMARK 3 T13: 0.0261 T23: 0.0158 REMARK 3 L TENSOR REMARK 3 L11: 0.5734 L22: 1.2842 REMARK 3 L33: 0.1590 L12: -0.0071 REMARK 3 L13: 0.5602 L23: 0.4414 REMARK 3 S TENSOR REMARK 3 S11: 0.0085 S12: 0.0120 S13: -0.0032 REMARK 3 S21: -0.0101 S22: -0.0038 S23: 0.0275 REMARK 3 S31: 0.0226 S32: -0.0555 S33: -0.0047 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS; U VALUES: RESIDUAL ONLY REMARK 4 REMARK 4 4E0L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1000071017. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6471 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 19.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 64.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.53000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.380 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NA/K PHOSPHATE BUFFER PH 6.2, 35% REMARK 280 (V/V) 2-METHYL-2,4-PENTANEDIOL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 33.49500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.39000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 33.49500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.39000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 2930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 2890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE ORN C 0 O ALA C 13 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ORN A 8 O - C - N ANGL. DEV. = -13.0 DEGREES REMARK 500 HAO A 11 CA - C - N ANGL. DEV. = 23.8 DEGREES REMARK 500 ASN B 10 O - C - N ANGL. DEV. = -10.1 DEGREES REMARK 500 HAO B 11 CA - C - N ANGL. DEV. = 16.4 DEGREES REMARK 500 ORN C 8 CA - C - N ANGL. DEV. = -13.3 DEGREES REMARK 500 ORN C 8 O - C - N ANGL. DEV. = 10.2 DEGREES REMARK 500 HAO C 11 CA - C - N ANGL. DEV. = 27.0 DEGREES REMARK 500 ORN D 8 CA - C - N ANGL. DEV. = -16.0 DEGREES REMARK 500 ORN D 8 O - C - N ANGL. DEV. = 15.4 DEGREES REMARK 500 ASN D 10 O - C - N ANGL. DEV. = -12.3 DEGREES REMARK 500 HAO D 11 CA - C - N ANGL. DEV. = 17.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ORN A 8 -12.25 REMARK 500 ORN B 0 -10.67 REMARK 500 ASN B 10 22.97 REMARK 500 ASN D 10 24.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD C 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4E0K RELATED DB: PDB REMARK 900 RELATED ID: 4E0M RELATED DB: PDB REMARK 900 RELATED ID: 4E0N RELATED DB: PDB REMARK 900 RELATED ID: 4E0O RELATED DB: PDB DBREF 4E0L A 0 13 PDB 4E0L 4E0L 0 13 DBREF 4E0L B 0 13 PDB 4E0L 4E0L 0 13 DBREF 4E0L C 0 13 PDB 4E0L 4E0L 0 13 DBREF 4E0L D 0 13 PDB 4E0L 4E0L 0 13 SEQRES 1 A 14 ORN PHE TYR LEU LEU TYR TYR THR ORN LYS ASN HAO SER SEQRES 2 A 14 ALA SEQRES 1 B 14 ORN PHE TYR LEU LEU TYR TYR THR ORN LYS ASN HAO SER SEQRES 2 B 14 ALA SEQRES 1 C 14 ORN PHE TYR LEU LEU TYR TYR THR ORN LYS ASN HAO SER SEQRES 2 C 14 ALA SEQRES 1 D 14 ORN PHE TYR LEU LEU TYR TYR THR ORN LYS ASN HAO SER SEQRES 2 D 14 ALA MODRES 4E0L ORN A 0 ALA L-ORNITHINE MODRES 4E0L ORN A 8 ALA L-ORNITHINE MODRES 4E0L ORN B 0 ALA L-ORNITHINE MODRES 4E0L ORN B 8 ALA L-ORNITHINE MODRES 4E0L ORN C 0 ALA L-ORNITHINE MODRES 4E0L ORN C 8 ALA L-ORNITHINE MODRES 4E0L ORN D 0 ALA L-ORNITHINE MODRES 4E0L ORN D 8 ALA L-ORNITHINE HET ORN A 0 8 HET ORN A 8 8 HET HAO A 11 17 HET ORN B 0 8 HET ORN B 8 8 HET HAO B 11 17 HET ORN C 0 8 HET ORN C 8 8 HET HAO C 11 17 HET ORN D 0 8 HET ORN D 8 8 HET HAO D 11 17 HET MPD A 101 8 HET MPD C 101 8 HETNAM ORN L-ORNITHINE HETNAM HAO {[3-(HYDRAZINOCARBONYL)-4-METHOXYPHENYL]AMINO}(OXO) HETNAM 2 HAO ACETIC ACID HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 1 ORN 8(C5 H12 N2 O2) FORMUL 1 HAO 4(C10 H11 N3 O5) FORMUL 5 MPD 2(C6 H14 O2) FORMUL 7 HOH *16(H2 O) SHEET 1 A 2 TYR A 2 TYR A 6 0 SHEET 2 A 2 TYR B 2 TYR B 6 -1 O TYR B 6 N TYR A 2 SHEET 1 B 2 TYR C 2 TYR C 6 0 SHEET 2 B 2 TYR D 2 TYR D 6 -1 O TYR D 6 N TYR C 2 LINK C ORN A 0 N PHE A 1 1555 1555 1.39 LINK NE ORN A 0 C ALA A 13 1555 1555 1.34 LINK C THR A 7 NE ORN A 8 1555 1555 1.34 LINK C ORN A 8 N LYS A 9 1555 1555 1.35 LINK C ASN A 10 N HAO A 11 1555 1555 1.36 LINK C HAO A 11 N SER A 12 1555 1555 1.38 LINK C ORN B 0 N PHE B 1 1555 1555 1.38 LINK NE ORN B 0 C ALA B 13 1555 1555 1.42 LINK C THR B 7 NE ORN B 8 1555 1555 1.37 LINK C ORN B 8 N LYS B 9 1555 1555 1.36 LINK C ASN B 10 N HAO B 11 1555 1555 1.36 LINK C HAO B 11 N SER B 12 1555 1555 1.39 LINK C ORN C 0 N PHE C 1 1555 1555 1.39 LINK NE ORN C 0 C ALA C 13 1555 1555 1.37 LINK C THR C 7 NE ORN C 8 1555 1555 1.39 LINK C ORN C 8 N LYS C 9 1555 1555 1.35 LINK C ASN C 10 N HAO C 11 1555 1555 1.37 LINK C HAO C 11 N SER C 12 1555 1555 1.36 LINK C ORN D 0 N PHE D 1 1555 1555 1.35 LINK NE ORN D 0 C ALA D 13 1555 1555 1.38 LINK C THR D 7 NE ORN D 8 1555 1555 1.35 LINK C ORN D 8 N LYS D 9 1555 1555 1.39 LINK C ASN D 10 N HAO D 11 1555 1555 1.35 LINK C HAO D 11 N SER D 12 1555 1555 1.38 SITE 1 AC1 3 HOH A 204 ORN B 0 ORN D 0 SITE 1 AC2 2 ORN B 0 ORN D 0 CRYST1 66.990 40.780 23.990 90.00 98.76 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014928 0.000000 0.002300 0.00000 SCALE2 0.000000 0.024522 0.000000 0.00000 SCALE3 0.000000 0.000000 0.042176 0.00000 HETATM 1 N ORN A 0 23.382 -1.403 19.449 1.00 13.56 N ANISOU 1 N ORN A 0 3318 1137 696 703 -70 72 N HETATM 2 CA ORN A 0 21.987 -1.565 19.042 1.00 13.94 C ANISOU 2 CA ORN A 0 3375 1163 760 660 -31 158 C HETATM 3 CB ORN A 0 21.119 -0.453 19.613 1.00 12.84 C ANISOU 3 CB ORN A 0 3222 1003 655 670 -21 177 C HETATM 4 CG ORN A 0 20.935 -0.544 21.149 1.00 12.02 C ANISOU 4 CG ORN A 0 3165 892 510 770 -16 157 C HETATM 5 CD ORN A 0 20.035 -1.682 21.653 1.00 12.21 C ANISOU 5 CD ORN A 0 3235 897 509 802 38 183 C HETATM 6 NE ORN A 0 18.719 -1.661 21.014 1.00 13.68 N ANISOU 6 NE ORN A 0 3421 1066 712 740 69 282 N HETATM 7 C ORN A 0 21.801 -1.679 17.530 1.00 16.52 C ANISOU 7 C ORN A 0 3668 1488 1120 571 -27 202 C HETATM 8 O ORN A 0 22.686 -1.312 16.761 1.00 21.20 O ANISOU 8 O ORN A 0 4225 2090 1741 536 -49 174 O