HEADER TOXIN 06-MAR-12 4E1C TITLE STRUCTURE OF A VGRG VIBRIO CHOLERAE TOXIN ACD DOMAIN IN COMPLEX WITH TITLE 2 ADP AND MG++ COMPND MOL_ID: 1; COMPND 2 MOLECULE: VGRG PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: VIBRIO CHOLERAE VGRG1 ACD (UNP RESIDUES 716-1111); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 3 ORGANISM_TAXID: 666; SOURCE 4 STRAIN: O395; SOURCE 5 GENE: VC_1416, VGRG1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PETG20A KEYWDS ALPHA BETA PROTEIN, G-ACTIN CROSS-LINKING TOXIN, G-ACTIN, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR E.DURAND,G.AUDOLY,E.DERREZ,S.SPINELLI,M.ORTIZ-LOMBARDIA,E.CASCALES, AUTHOR 2 D.RAOULT,C.CAMBILLAU REVDAT 2 13-SEP-23 4E1C 1 REMARK LINK REVDAT 1 29-AUG-12 4E1C 0 JRNL AUTH E.DURAND,G.AUDOLY,E.DERREZ,S.SPINELLI,M.ORTIZ-LOMBARDIA, JRNL AUTH 2 E.CASCALES,D.RAOULT,C.CAMBILLAU JRNL TITL STRUCTURE AND FUNCTIONAL CHARACTERIZATION OF THE VIBRIO JRNL TITL 2 CHOLERAE TOXIN FROM THE VGRG/MARTX FAMILY. JRNL REF J.BIOL.CHEM. 2012 JRNL REFN ESSN 1083-351X REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 3 NUMBER OF REFLECTIONS : 28721 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.550 REMARK 3 FREE R VALUE TEST SET COUNT : 1019 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 14 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.33 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.92 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3061 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2085 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2954 REMARK 3 BIN R VALUE (WORKING SET) : 0.2080 REMARK 3 BIN FREE R VALUE : 0.2235 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 3.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 107 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2757 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 55 REMARK 3 SOLVENT ATOMS : 470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.49 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.28820 REMARK 3 B22 (A**2) : -2.28820 REMARK 3 B33 (A**2) : 4.57640 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.260 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.185 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2888 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3932 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 989 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 80 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 422 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2888 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 385 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3579 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.08 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.23 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.17 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|0 - A|17 } REMARK 3 ORIGIN FOR THE GROUP (A): 34.3198 89.1554 16.5402 REMARK 3 T TENSOR REMARK 3 T11: -0.0186 T22: 0.0267 REMARK 3 T33: -0.0063 T12: -0.0137 REMARK 3 T13: 0.0191 T23: 0.0082 REMARK 3 L TENSOR REMARK 3 L11: 0.1942 L22: 0.0971 REMARK 3 L33: 0.0358 L12: 0.2158 REMARK 3 L13: 0.0935 L23: -0.1793 REMARK 3 S TENSOR REMARK 3 S11: 0.0018 S12: -0.0030 S13: -0.0021 REMARK 3 S21: 0.0031 S22: -0.0002 S23: -0.0034 REMARK 3 S31: 0.0030 S32: -0.0032 S33: -0.0016 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|18 - A|53 } REMARK 3 ORIGIN FOR THE GROUP (A): 46.1439 90.0334 6.3373 REMARK 3 T TENSOR REMARK 3 T11: -0.0421 T22: 0.0494 REMARK 3 T33: -0.0118 T12: -0.0256 REMARK 3 T13: -0.0098 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 1.4269 L22: 0.0000 REMARK 3 L33: 0.0053 L12: 0.3882 REMARK 3 L13: -0.3824 L23: 0.1996 REMARK 3 S TENSOR REMARK 3 S11: 0.0008 S12: 0.0047 S13: -0.0176 REMARK 3 S21: 0.0112 S22: 0.0021 S23: 0.0057 REMARK 3 S31: 0.0014 S32: -0.0097 S33: -0.0028 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { A|54 - A|78 } REMARK 3 ORIGIN FOR THE GROUP (A): 55.2183 87.9177 -7.2292 REMARK 3 T TENSOR REMARK 3 T11: -0.0418 T22: 0.0527 REMARK 3 T33: -0.0091 T12: 0.0132 REMARK 3 T13: -0.0019 T23: -0.0312 REMARK 3 L TENSOR REMARK 3 L11: 0.3571 L22: 0.0000 REMARK 3 L33: 0.6518 L12: -0.0160 REMARK 3 L13: 0.3797 L23: 0.2034 REMARK 3 S TENSOR REMARK 3 S11: 0.0007 S12: 0.0089 S13: -0.0110 REMARK 3 S21: -0.0076 S22: 0.0012 S23: -0.0005 REMARK 3 S31: 0.0081 S32: -0.0018 S33: -0.0019 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { A|79 - A|116 } REMARK 3 ORIGIN FOR THE GROUP (A): 46.4501 98.4860 11.3262 REMARK 3 T TENSOR REMARK 3 T11: -0.0550 T22: 0.0366 REMARK 3 T33: -0.0110 T12: -0.0236 REMARK 3 T13: -0.0165 T23: -0.0155 REMARK 3 L TENSOR REMARK 3 L11: 0.5450 L22: 0.0361 REMARK 3 L33: 0.6086 L12: 0.0690 REMARK 3 L13: 0.8880 L23: 0.3473 REMARK 3 S TENSOR REMARK 3 S11: -0.0006 S12: -0.0110 S13: 0.0108 REMARK 3 S21: 0.0145 S22: -0.0130 S23: -0.0042 REMARK 3 S31: -0.0016 S32: -0.0140 S33: 0.0136 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { A|117 - A|143 } REMARK 3 ORIGIN FOR THE GROUP (A): 54.1067 93.1353 9.4907 REMARK 3 T TENSOR REMARK 3 T11: -0.0310 T22: 0.0475 REMARK 3 T33: -0.0185 T12: -0.0004 REMARK 3 T13: -0.0077 T23: -0.0195 REMARK 3 L TENSOR REMARK 3 L11: 0.9327 L22: 0.0000 REMARK 3 L33: 0.0006 L12: -0.1936 REMARK 3 L13: 0.1953 L23: 0.2044 REMARK 3 S TENSOR REMARK 3 S11: 0.0013 S12: -0.0093 S13: -0.0021 REMARK 3 S21: -0.0010 S22: -0.0054 S23: -0.0038 REMARK 3 S31: 0.0001 S32: 0.0074 S33: 0.0041 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: { A|144 - A|170 } REMARK 3 ORIGIN FOR THE GROUP (A): 40.7054 99.0417 2.8214 REMARK 3 T TENSOR REMARK 3 T11: -0.0353 T22: 0.0140 REMARK 3 T33: -0.0056 T12: 0.0019 REMARK 3 T13: 0.0151 T23: 0.0034 REMARK 3 L TENSOR REMARK 3 L11: 0.1697 L22: 0.1468 REMARK 3 L33: 0.4696 L12: 0.5307 REMARK 3 L13: 0.7565 L23: -0.2510 REMARK 3 S TENSOR REMARK 3 S11: -0.0010 S12: -0.0010 S13: 0.0065 REMARK 3 S21: -0.0097 S22: 0.0022 S23: -0.0041 REMARK 3 S31: -0.0225 S32: -0.0002 S33: -0.0013 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: { A|171 - A|206 } REMARK 3 ORIGIN FOR THE GROUP (A): 9.2252 91.2122 13.1717 REMARK 3 T TENSOR REMARK 3 T11: -0.0848 T22: 0.0855 REMARK 3 T33: -0.0024 T12: 0.0476 REMARK 3 T13: -0.0062 T23: -0.0585 REMARK 3 L TENSOR REMARK 3 L11: 0.6431 L22: 0.0000 REMARK 3 L33: 0.2282 L12: -0.3156 REMARK 3 L13: -0.0960 L23: 0.5244 REMARK 3 S TENSOR REMARK 3 S11: 0.0014 S12: -0.0084 S13: 0.0021 REMARK 3 S21: 0.0055 S22: 0.0073 S23: 0.0033 REMARK 3 S31: -0.0081 S32: -0.0144 S33: -0.0087 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: { A|207 - A|236 } REMARK 3 ORIGIN FOR THE GROUP (A): 12.4292 85.5843 3.9803 REMARK 3 T TENSOR REMARK 3 T11: -0.0875 T22: 0.0692 REMARK 3 T33: 0.0032 T12: 0.0254 REMARK 3 T13: -0.0394 T23: -0.0072 REMARK 3 L TENSOR REMARK 3 L11: 1.1905 L22: 0.0000 REMARK 3 L33: 0.0717 L12: -0.1708 REMARK 3 L13: 0.8192 L23: -0.4167 REMARK 3 S TENSOR REMARK 3 S11: 0.0043 S12: -0.0303 S13: -0.0015 REMARK 3 S21: -0.0067 S22: -0.0071 S23: 0.0009 REMARK 3 S31: 0.0030 S32: -0.0120 S33: 0.0028 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: { A|237 - A|269 } REMARK 3 ORIGIN FOR THE GROUP (A): 20.6156 85.8448 -7.1369 REMARK 3 T TENSOR REMARK 3 T11: -0.0394 T22: 0.0538 REMARK 3 T33: -0.0203 T12: -0.0037 REMARK 3 T13: -0.0282 T23: 0.0126 REMARK 3 L TENSOR REMARK 3 L11: 0.7822 L22: 0.0000 REMARK 3 L33: 0.4858 L12: 0.0555 REMARK 3 L13: -0.6829 L23: -0.1104 REMARK 3 S TENSOR REMARK 3 S11: -0.0062 S12: 0.0058 S13: -0.0017 REMARK 3 S21: -0.0073 S22: 0.0035 S23: -0.0030 REMARK 3 S31: 0.0075 S32: 0.0058 S33: 0.0027 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: { A|270 - A|319 } REMARK 3 ORIGIN FOR THE GROUP (A): 12.0113 78.2483 4.6769 REMARK 3 T TENSOR REMARK 3 T11: -0.1163 T22: 0.0972 REMARK 3 T33: 0.0085 T12: -0.0269 REMARK 3 T13: -0.0416 T23: 0.0340 REMARK 3 L TENSOR REMARK 3 L11: 1.3173 L22: 0.0000 REMARK 3 L33: 0.7439 L12: 0.3516 REMARK 3 L13: -0.2332 L23: -0.9208 REMARK 3 S TENSOR REMARK 3 S11: 0.0016 S12: -0.0085 S13: -0.0225 REMARK 3 S21: 0.0086 S22: -0.0110 S23: 0.0030 REMARK 3 S31: 0.0229 S32: -0.0171 S33: 0.0094 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: { A|320 - A|343 } REMARK 3 ORIGIN FOR THE GROUP (A): 26.2265 86.4324 15.7443 REMARK 3 T TENSOR REMARK 3 T11: -0.0319 T22: 0.0450 REMARK 3 T33: -0.0122 T12: -0.0025 REMARK 3 T13: -0.0270 T23: 0.0271 REMARK 3 L TENSOR REMARK 3 L11: 0.7227 L22: 0.0000 REMARK 3 L33: 0.0393 L12: 0.5824 REMARK 3 L13: 0.4544 L23: -0.1907 REMARK 3 S TENSOR REMARK 3 S11: 0.0008 S12: -0.0071 S13: -0.0028 REMARK 3 S21: 0.0089 S22: -0.0034 S23: 0.0020 REMARK 3 S31: 0.0023 S32: -0.0074 S33: 0.0026 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: { A|344 - A|355 } REMARK 3 ORIGIN FOR THE GROUP (A): 32.5336 105.0090 10.5272 REMARK 3 T TENSOR REMARK 3 T11: -0.0071 T22: 0.0104 REMARK 3 T33: 0.0019 T12: 0.0094 REMARK 3 T13: 0.0085 T23: -0.0099 REMARK 3 L TENSOR REMARK 3 L11: 0.0349 L22: 0.0784 REMARK 3 L33: 0.0359 L12: -0.0574 REMARK 3 L13: 0.0420 L23: 0.0299 REMARK 3 S TENSOR REMARK 3 S11: 0.0001 S12: -0.0017 S13: 0.0023 REMARK 3 S21: -0.0029 S22: -0.0012 S23: -0.0003 REMARK 3 S31: -0.0053 S32: -0.0017 S33: 0.0012 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: { A|401 - A|401 } REMARK 3 ORIGIN FOR THE GROUP (A): 33.3948 88.5417 10.3270 REMARK 3 T TENSOR REMARK 3 T11: -0.0062 T22: 0.0079 REMARK 3 T33: -0.0004 T12: -0.0085 REMARK 3 T13: -0.0024 T23: -0.0055 REMARK 3 L TENSOR REMARK 3 L11: 0.0334 L22: 0.0000 REMARK 3 L33: 0.0053 L12: 0.0161 REMARK 3 L13: 0.0189 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0006 S12: -0.0002 S13: -0.0007 REMARK 3 S21: -0.0022 S22: -0.0002 S23: 0.0000 REMARK 3 S31: 0.0012 S32: 0.0003 S33: -0.0003 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4E1C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1000071044. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28824 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.43600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 4DTF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 300 NL OF PROTEIN AT 13MG/ML, 100 NL REMARK 280 OF 2.4 M AMSO4, 0.1 M BI-TRIS, PH 6.3, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.19500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 57.29250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 19.09750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 38.19500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 19.09750 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 57.29250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A -11 REMARK 465 ALA A -10 REMARK 465 GLN A -9 REMARK 465 PRO A -8 REMARK 465 ASN A -7 REMARK 465 LEU A -6 REMARK 465 GLY A -5 REMARK 465 ARG A -4 REMARK 465 SER A -3 REMARK 465 THR A -2 REMARK 465 LYS A -1 REMARK 465 SER A 356 REMARK 465 THR A 357 REMARK 465 THR A 358 REMARK 465 LYS A 359 REMARK 465 SER A 360 REMARK 465 GLU A 361 REMARK 465 VAL A 362 REMARK 465 LYS A 363 REMARK 465 LEU A 364 REMARK 465 LEU A 365 REMARK 465 ASP A 366 REMARK 465 GLN A 367 REMARK 465 PHE A 368 REMARK 465 ASP A 369 REMARK 465 PRO A 370 REMARK 465 MET A 371 REMARK 465 LYS A 372 REMARK 465 ARG A 373 REMARK 465 LYS A 374 REMARK 465 THR A 375 REMARK 465 VAL A 376 REMARK 465 ILE A 377 REMARK 465 GLN A 378 REMARK 465 GLN A 379 REMARK 465 VAL A 380 REMARK 465 GLU A 381 REMARK 465 SER A 382 REMARK 465 LEU A 383 REMARK 465 VAL A 384 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 355 CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 10 -155.76 -132.94 REMARK 500 ASP A 51 -94.48 -118.46 REMARK 500 SER A 175 19.65 56.93 REMARK 500 ASN A 238 -114.00 51.20 REMARK 500 GLU A 264 -59.01 72.46 REMARK 500 ALA A 317 73.19 -151.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 404 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 16 OE2 REMARK 620 2 ADP A 401 O3B 93.0 REMARK 620 3 ADP A 401 O3A 93.6 55.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 162 OE1 REMARK 620 2 GLU A 339 OE2 96.2 REMARK 620 3 HOH A 741 O 132.7 111.2 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 408 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DTD RELATED DB: PDB REMARK 900 RELATED ID: 4DTF RELATED DB: PDB REMARK 900 RELATED ID: 4DTH RELATED DB: PDB REMARK 900 RELATED ID: 4DTL RELATED DB: PDB REMARK 900 RELATED ID: 4E1D RELATED DB: PDB REMARK 900 RELATED ID: 4E1F RELATED DB: PDB DBREF 4E1C A -10 384 UNP Q9KS45 Q9KS45_VIBCH 717 1111 SEQRES 1 A 396 ASN ALA GLN PRO ASN LEU GLY ARG SER THR LYS ALA THR SEQRES 2 A 396 PRO ASP PHE PRO THR HIS PHE PRO LYS SER SER ILE GLY SEQRES 3 A 396 ILE GLU ASN GLU LEU ALA GLY LEU VAL VAL ALA MET PRO SEQRES 4 A 396 ALA ASN SER ALA GLN LYS PHE GLY TYR VAL LYS SER ALA SEQRES 5 A 396 GLN GLY ASP ALA LEU PHE MET LEU THR LYS ASP MET ASN SEQRES 6 A 396 GLN GLY SER TYR GLN ARG PRO PRO SER LEU GLN ASP GLY SEQRES 7 A 396 LYS ASN TYR GLN ASN TRP GLN THR HIS THR VAL GLU LEU SEQRES 8 A 396 VAL SER TYR PRO CYS GLU MET ASP ASP LYS ALA ALA VAL SEQRES 9 A 396 GLU THR ARG LYS GLN ALA MET LEU TRP LEU ALA THR HIS SEQRES 10 A 396 PHE THR THR HIS ILE ASP GLN SER ASN HIS GLN PRO LEU SEQRES 11 A 396 ALA PRO ILE GLN SER GLU ASP GLY ARG PHE VAL ILE GLU SEQRES 12 A 396 ILE THR ASN ALA LYS HIS VAL ILE ALA ALA GLY ASN GLY SEQRES 13 A 396 ILE SER ALA GLU SER GLN GLY GLN THR ILE THR MET THR SEQRES 14 A 396 PRO SER GLY GLN GLN ALA THR VAL GLY VAL ALA ALA LYS SEQRES 15 A 396 GLY PHE GLY THR SER ALA THR PRO GLU LEU ARG LEU LEU SEQRES 16 A 396 GLU SER ALA PRO TRP TYR GLN LYS SER LEU LYS SER GLN SEQRES 17 A 396 PHE ALA SER LEU THR SER ALA GLU ASN LEU ASP ASP LYS SEQRES 18 A 396 GLU LEU ALA ALA ASN VAL PHE ALA TYR LEU THR SER ILE SEQRES 19 A 396 TYR LEU LYS THR ALA GLU LEU ALA LYS LYS PHE GLY ILE SEQRES 20 A 396 TYR ILE ASN GLU TRP ASP PRO MET SER GLU GLN ILE THR SEQRES 21 A 396 PRO ASN ALA ASN GLY LEU THR ASP PRO LYS VAL LYS ASN SEQRES 22 A 396 ALA TRP GLU ILE LEU PRO ARG THR LYS PRO SER LYS ILE SEQRES 23 A 396 VAL GLU ILE LEU SER LYS SER ASP ALA LYS ALA VAL MET SEQRES 24 A 396 LYS HIS ILE LYS PRO GLN LEU GLN SER ARG TYR SER GLU SEQRES 25 A 396 SER LEU SER LYS ASN VAL PHE GLN TYR PHE GLN ASP GLY SEQRES 26 A 396 GLY GLU VAL ALA GLY HIS GLY ILE ASN ASN ALA THR VAL SEQRES 27 A 396 GLY ASP LYS HIS SER PRO GLU LEU ALA ILE LEU PHE GLU SEQRES 28 A 396 PHE ARG THR VAL PRO ASN GLU LEU GLN SER TYR LEU PRO SEQRES 29 A 396 LYS THR GLU SER THR THR LYS SER GLU VAL LYS LEU LEU SEQRES 30 A 396 ASP GLN PHE ASP PRO MET LYS ARG LYS THR VAL ILE GLN SEQRES 31 A 396 GLN VAL GLU SER LEU VAL HET ADP A 401 27 HET GOL A 402 6 HET MG A 403 1 HET MG A 404 1 HET SO4 A 405 5 HET SO4 A 406 5 HET SO4 A 407 5 HET SO4 A 408 5 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM GOL GLYCEROL HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 GOL C3 H8 O3 FORMUL 4 MG 2(MG 2+) FORMUL 6 SO4 4(O4 S 2-) FORMUL 10 HOH *470(H2 O) HELIX 1 1 PRO A 60 GLN A 64 5 5 HELIX 2 2 ASP A 88 SER A 113 1 26 HELIX 3 3 THR A 157 SER A 159 5 3 HELIX 4 4 LYS A 170 PHE A 172 5 3 HELIX 5 5 THR A 177 SER A 185 1 9 HELIX 6 6 SER A 192 THR A 201 1 10 HELIX 7 7 ASP A 208 GLY A 234 1 27 HELIX 8 8 ASP A 241 GLN A 246 5 6 HELIX 9 9 ASP A 256 GLU A 264 1 9 HELIX 10 10 LYS A 270 LEU A 278 5 9 HELIX 11 11 SER A 279 SER A 296 1 18 HELIX 12 12 SER A 299 ASP A 312 1 14 HELIX 13 13 PRO A 344 LEU A 351 5 8 LINK OE2 GLU A 16 MG MG A 404 1555 1555 2.45 LINK OE1 GLN A 162 MG MG A 403 1555 1555 2.57 LINK OE2 GLU A 339 MG MG A 403 1555 1555 2.60 LINK O3B ADP A 401 MG MG A 404 1555 1555 2.61 LINK O3A ADP A 401 MG MG A 404 1555 1555 2.90 LINK MG MG A 403 O HOH A 741 1555 1555 2.71 SITE 1 AC1 17 PHE A 4 SER A 12 GLY A 14 ILE A 15 SITE 2 AC1 17 GLU A 16 VAL A 80 SER A 81 PRO A 83 SITE 3 AC1 17 THR A 164 ARG A 268 ILE A 321 LEU A 337 SITE 4 AC1 17 MG A 404 HOH A 759 HOH A 834 HOH A 855 SITE 5 AC1 17 HOH A 896 SITE 1 AC2 7 LYS A 50 ASN A 53 GLY A 55 SER A 56 SITE 2 AC2 7 HIS A 75 HOH A 585 HOH A 589 SITE 1 AC3 4 GLU A 16 GLN A 162 GLU A 339 HOH A 741 SITE 1 AC4 3 GLU A 16 GLU A 78 ADP A 401 SITE 1 AC5 6 PRO A 257 LYS A 260 ARG A 341 HOH A 711 SITE 2 AC5 6 HOH A 741 HOH A 754 SITE 1 AC6 7 GLY A 142 ASN A 143 GLY A 144 ILE A 145 SITE 2 AC6 7 SER A 146 HOH A 609 HOH A 944 SITE 1 AC7 7 TRP A 101 HIS A 105 ILE A 121 GLU A 124 SITE 2 AC7 7 HOH A 579 HOH A 636 HOH A 854 SITE 1 AC8 5 ALA A 31 GLN A 32 LYS A 33 HOH A 904 SITE 2 AC8 5 HOH A 934 CRYST1 128.460 128.460 76.390 90.00 90.00 90.00 P 43 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007785 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007785 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013091 0.00000