HEADER TOXIN 06-MAR-12 4E1F TITLE STRUCTURE OF A VGRG VIBRIO CHOLERAE TOXIN ACD DOMAIN GLU16GLN MUTANT TITLE 2 IN COMPLEX WITH ADP AND MN++ COMPND MOL_ID: 1; COMPND 2 MOLECULE: VGRG PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: VIBRIO CHOLERAE VGRG1 ACD (UNP RESIDUES 716-1111); COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 3 ORGANISM_TAXID: 666; SOURCE 4 STRAIN: O395; SOURCE 5 GENE: VC_1416, VGRG1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PETG20A KEYWDS ALPHA/BETA PROTEIN, G-ACTIN CROSS-LINKING TOXIN, G-ACTIN (SUBSTRATE), KEYWDS 2 TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR E.DURAND,G.AUDOLY,E.DERREZ,S.SPINELLI,M.ORTIZ-LOMBARDIA,E.CASCALES, AUTHOR 2 D.RAOULT,C.CAMBILLAU REVDAT 2 13-SEP-23 4E1F 1 REMARK SEQADV LINK REVDAT 1 10-OCT-12 4E1F 0 JRNL AUTH E.DURAND,G.AUDOLY,E.DERREZ,S.SPINELLI,M.ORTIZ-LOMBARDIA, JRNL AUTH 2 E.CASCALES,D.RAOULT,C.CAMBILLAU JRNL TITL STRUCTURE AND FUNCTIONAL CHARACTERIZATION OF THE VIBRIO JRNL TITL 2 CHOLERAE TOXIN FROM THE VGRG/MARTX FAMILY. JRNL REF J.BIOL.CHEM. 2012 JRNL REFN ESSN 1083-351X REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 38592 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.140 REMARK 3 FREE R VALUE TEST SET COUNT : 1210 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 19 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.16 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.96 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2951 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1925 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2858 REMARK 3 BIN R VALUE (WORKING SET) : 0.1914 REMARK 3 BIN FREE R VALUE : 0.2264 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 3.15 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 93 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2753 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 63 REMARK 3 SOLVENT ATOMS : 472 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.45 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.79170 REMARK 3 B22 (A**2) : -2.79170 REMARK 3 B33 (A**2) : 5.58350 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.234 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.131 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2885 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3930 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 982 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 79 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 419 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2885 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 384 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3554 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.10 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.26 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.27 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|0 - A|17 } REMARK 3 ORIGIN FOR THE GROUP (A): 34.5350 89.5371 16.5599 REMARK 3 T TENSOR REMARK 3 T11: -0.0261 T22: 0.0291 REMARK 3 T33: -0.0138 T12: -0.0213 REMARK 3 T13: 0.0223 T23: 0.0178 REMARK 3 L TENSOR REMARK 3 L11: 0.2710 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.1134 REMARK 3 L13: 0.1133 L23: -0.2726 REMARK 3 S TENSOR REMARK 3 S11: 0.0019 S12: -0.0032 S13: -0.0072 REMARK 3 S21: 0.0027 S22: 0.0016 S23: -0.0119 REMARK 3 S31: 0.0058 S32: -0.0062 S33: -0.0035 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|18 - A|53 } REMARK 3 ORIGIN FOR THE GROUP (A): 46.3864 90.3370 6.3360 REMARK 3 T TENSOR REMARK 3 T11: -0.0296 T22: 0.0466 REMARK 3 T33: -0.0195 T12: -0.0099 REMARK 3 T13: 0.0195 T23: 0.0182 REMARK 3 L TENSOR REMARK 3 L11: 1.3318 L22: 0.0000 REMARK 3 L33: 0.1749 L12: 0.4477 REMARK 3 L13: -0.3194 L23: 0.1994 REMARK 3 S TENSOR REMARK 3 S11: 0.0041 S12: -0.0104 S13: -0.0115 REMARK 3 S21: -0.0049 S22: -0.0057 S23: 0.0103 REMARK 3 S31: 0.0060 S32: -0.0055 S33: 0.0015 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { A|54 - A|78 } REMARK 3 ORIGIN FOR THE GROUP (A): 55.5040 88.1814 -7.2006 REMARK 3 T TENSOR REMARK 3 T11: -0.0440 T22: 0.0451 REMARK 3 T33: 0.0061 T12: -0.0060 REMARK 3 T13: 0.0081 T23: -0.0235 REMARK 3 L TENSOR REMARK 3 L11: 0.3911 L22: 0.0329 REMARK 3 L33: 0.4385 L12: 0.2422 REMARK 3 L13: 0.1703 L23: 0.3412 REMARK 3 S TENSOR REMARK 3 S11: 0.0010 S12: 0.0085 S13: -0.0137 REMARK 3 S21: -0.0129 S22: 0.0080 S23: -0.0011 REMARK 3 S31: 0.0089 S32: -0.0035 S33: -0.0090 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { A|79 - A|116 } REMARK 3 ORIGIN FOR THE GROUP (A): 46.7058 98.8180 11.3013 REMARK 3 T TENSOR REMARK 3 T11: -0.0492 T22: 0.0426 REMARK 3 T33: -0.0200 T12: -0.0403 REMARK 3 T13: 0.0136 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.4529 L22: 0.1999 REMARK 3 L33: 0.7011 L12: 0.1787 REMARK 3 L13: 0.6030 L23: -0.0012 REMARK 3 S TENSOR REMARK 3 S11: 0.0004 S12: -0.0236 S13: 0.0114 REMARK 3 S21: 0.0153 S22: -0.0141 S23: -0.0034 REMARK 3 S31: 0.0042 S32: -0.0294 S33: 0.0136 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { A|117 - A|143 } REMARK 3 ORIGIN FOR THE GROUP (A): 54.3456 93.4398 9.5016 REMARK 3 T TENSOR REMARK 3 T11: -0.0281 T22: 0.0556 REMARK 3 T33: -0.0217 T12: -0.0073 REMARK 3 T13: 0.0104 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 0.9322 L22: 0.0000 REMARK 3 L33: 0.0537 L12: 0.1192 REMARK 3 L13: -0.0044 L23: 0.2868 REMARK 3 S TENSOR REMARK 3 S11: -0.0024 S12: -0.0229 S13: -0.0049 REMARK 3 S21: -0.0063 S22: 0.0003 S23: -0.0037 REMARK 3 S31: 0.0047 S32: 0.0066 S33: 0.0021 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: { A|144 - A|170 } REMARK 3 ORIGIN FOR THE GROUP (A): 40.9819 99.3534 2.8013 REMARK 3 T TENSOR REMARK 3 T11: -0.0369 T22: 0.0228 REMARK 3 T33: -0.0040 T12: -0.0084 REMARK 3 T13: 0.0320 T23: 0.0079 REMARK 3 L TENSOR REMARK 3 L11: 0.0858 L22: 0.2234 REMARK 3 L33: 0.4737 L12: 0.2725 REMARK 3 L13: 0.4546 L23: -0.2134 REMARK 3 S TENSOR REMARK 3 S11: -0.0011 S12: -0.0099 S13: 0.0197 REMARK 3 S21: -0.0161 S22: -0.0079 S23: 0.0024 REMARK 3 S31: -0.0219 S32: -0.0124 S33: 0.0090 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: { A|171 - A|206 } REMARK 3 ORIGIN FOR THE GROUP (A): 9.4222 91.7074 13.1352 REMARK 3 T TENSOR REMARK 3 T11: -0.1005 T22: 0.1227 REMARK 3 T33: -0.0259 T12: 0.0310 REMARK 3 T13: 0.0252 T23: -0.0210 REMARK 3 L TENSOR REMARK 3 L11: 0.7441 L22: 0.0000 REMARK 3 L33: 0.4553 L12: 0.0201 REMARK 3 L13: -0.3086 L23: 0.0704 REMARK 3 S TENSOR REMARK 3 S11: 0.0020 S12: -0.0075 S13: 0.0076 REMARK 3 S21: 0.0073 S22: 0.0091 S23: 0.0050 REMARK 3 S31: -0.0129 S32: -0.0060 S33: -0.0111 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: { A|207 - A|236 } REMARK 3 ORIGIN FOR THE GROUP (A): 12.5680 85.9742 3.9980 REMARK 3 T TENSOR REMARK 3 T11: -0.1033 T22: 0.0847 REMARK 3 T33: -0.0020 T12: 0.0022 REMARK 3 T13: -0.0110 T23: 0.0068 REMARK 3 L TENSOR REMARK 3 L11: 1.2512 L22: 0.0493 REMARK 3 L33: 0.0519 L12: 0.2472 REMARK 3 L13: 0.6577 L23: -0.2804 REMARK 3 S TENSOR REMARK 3 S11: 0.0034 S12: -0.0328 S13: 0.0018 REMARK 3 S21: -0.0070 S22: -0.0045 S23: 0.0006 REMARK 3 S31: 0.0014 S32: -0.0111 S33: 0.0010 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: { A|237 - A|269 } REMARK 3 ORIGIN FOR THE GROUP (A): 20.8328 86.0856 -7.0622 REMARK 3 T TENSOR REMARK 3 T11: -0.0417 T22: 0.0655 REMARK 3 T33: -0.0335 T12: 0.0013 REMARK 3 T13: 0.0004 T23: 0.0254 REMARK 3 L TENSOR REMARK 3 L11: 1.1289 L22: 0.0190 REMARK 3 L33: 0.4781 L12: 0.0987 REMARK 3 L13: -0.5129 L23: -0.2537 REMARK 3 S TENSOR REMARK 3 S11: -0.0063 S12: -0.0037 S13: 0.0029 REMARK 3 S21: -0.0158 S22: 0.0082 S23: -0.0042 REMARK 3 S31: 0.0149 S32: -0.0028 S33: -0.0020 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: { A|270 - A|319 } REMARK 3 ORIGIN FOR THE GROUP (A): 12.0601 78.6433 4.7468 REMARK 3 T TENSOR REMARK 3 T11: -0.1309 T22: 0.1140 REMARK 3 T33: 0.0058 T12: -0.0536 REMARK 3 T13: -0.0272 T23: 0.0367 REMARK 3 L TENSOR REMARK 3 L11: 1.5086 L22: 0.0000 REMARK 3 L33: 0.9436 L12: -0.1538 REMARK 3 L13: -0.4980 L23: -0.1776 REMARK 3 S TENSOR REMARK 3 S11: 0.0050 S12: -0.0089 S13: -0.0381 REMARK 3 S21: 0.0112 S22: -0.0138 S23: -0.0033 REMARK 3 S31: 0.0088 S32: -0.0236 S33: 0.0088 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: { A|320 - A|343 } REMARK 3 ORIGIN FOR THE GROUP (A): 26.3480 87.0073 15.8391 REMARK 3 T TENSOR REMARK 3 T11: -0.0389 T22: 0.0591 REMARK 3 T33: -0.0227 T12: -0.0329 REMARK 3 T13: -0.0101 T23: 0.0252 REMARK 3 L TENSOR REMARK 3 L11: 0.6195 L22: 0.1010 REMARK 3 L33: 0.0976 L12: 0.2401 REMARK 3 L13: 0.1749 L23: -0.2285 REMARK 3 S TENSOR REMARK 3 S11: 0.0052 S12: -0.0105 S13: -0.0045 REMARK 3 S21: 0.0029 S22: -0.0006 S23: -0.0113 REMARK 3 S31: 0.0007 S32: -0.0118 S33: -0.0046 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: { A|344 - A|354 } REMARK 3 ORIGIN FOR THE GROUP (A): 32.4123 105.0380 10.6074 REMARK 3 T TENSOR REMARK 3 T11: -0.0095 T22: 0.0221 REMARK 3 T33: 0.0008 T12: -0.0021 REMARK 3 T13: 0.0099 T23: -0.0198 REMARK 3 L TENSOR REMARK 3 L11: 0.0035 L22: 0.0472 REMARK 3 L33: 0.0802 L12: 0.0461 REMARK 3 L13: 0.0545 L23: 0.1117 REMARK 3 S TENSOR REMARK 3 S11: 0.0004 S12: -0.0003 S13: 0.0034 REMARK 3 S21: -0.0021 S22: -0.0009 S23: 0.0011 REMARK 3 S31: -0.0057 S32: 0.0007 S33: 0.0004 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: { A|401 - A|401 } REMARK 3 ORIGIN FOR THE GROUP (A): 33.7842 88.8292 9.9572 REMARK 3 T TENSOR REMARK 3 T11: -0.0068 T22: 0.0087 REMARK 3 T33: -0.0011 T12: -0.0086 REMARK 3 T13: -0.0149 T23: -0.0023 REMARK 3 L TENSOR REMARK 3 L11: 0.0481 L22: 0.0000 REMARK 3 L33: 0.0112 L12: 0.0398 REMARK 3 L13: 0.0404 L23: 0.0206 REMARK 3 S TENSOR REMARK 3 S11: 0.0005 S12: -0.0004 S13: -0.0008 REMARK 3 S21: -0.0035 S22: -0.0007 S23: -0.0011 REMARK 3 S31: 0.0008 S32: -0.0003 S33: 0.0002 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4E1F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1000071047. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72859 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.10 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 0.3630 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.90 REMARK 200 R MERGE FOR SHELL (I) : 0.28100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 10.10 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4E1D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 300 NL OF PROTEIN AT 13MG/ML, 100 NL REMARK 280 OF 2.4 M AMSO4, 0.1 M BI-TRIS, PH 6.3, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.55500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 57.83250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 19.27750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 38.55500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 19.27750 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 57.83250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -212.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 129.13000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 129.13000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -19.27750 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A -11 REMARK 465 ALA A -10 REMARK 465 GLN A -9 REMARK 465 PRO A -8 REMARK 465 ASN A -7 REMARK 465 LEU A -6 REMARK 465 GLY A -5 REMARK 465 ARG A -4 REMARK 465 SER A -3 REMARK 465 THR A -2 REMARK 465 LYS A -1 REMARK 465 GLU A 355 REMARK 465 SER A 356 REMARK 465 THR A 357 REMARK 465 THR A 358 REMARK 465 LYS A 359 REMARK 465 SER A 360 REMARK 465 GLU A 361 REMARK 465 VAL A 362 REMARK 465 LYS A 363 REMARK 465 LEU A 364 REMARK 465 LEU A 365 REMARK 465 ASP A 366 REMARK 465 GLN A 367 REMARK 465 PHE A 368 REMARK 465 ASP A 369 REMARK 465 PRO A 370 REMARK 465 MET A 371 REMARK 465 LYS A 372 REMARK 465 ARG A 373 REMARK 465 LYS A 374 REMARK 465 THR A 375 REMARK 465 VAL A 376 REMARK 465 ILE A 377 REMARK 465 GLN A 378 REMARK 465 GLN A 379 REMARK 465 VAL A 380 REMARK 465 GLU A 381 REMARK 465 SER A 382 REMARK 465 LEU A 383 REMARK 465 VAL A 384 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 10 -148.84 -138.85 REMARK 500 ASP A 51 -88.64 -118.96 REMARK 500 ASN A 238 -113.83 51.36 REMARK 500 GLU A 264 -57.73 72.07 REMARK 500 ALA A 317 67.26 -155.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A 401 O3B REMARK 620 2 HOH A 809 O 153.2 REMARK 620 3 HOH A 927 O 86.5 84.6 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 409 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4E1D RELATED DB: PDB REMARK 900 RELATED ID: 4DTL RELATED DB: PDB REMARK 900 RELATED ID: 4E1C RELATED DB: PDB DBREF 4E1F A -11 384 UNP Q9KS45 Q9KS45_VIBCH 716 1111 SEQADV 4E1F GLN A 16 UNP Q9KS45 GLU 743 ENGINEERED MUTATION SEQRES 1 A 396 ASN ALA GLN PRO ASN LEU GLY ARG SER THR LYS ALA THR SEQRES 2 A 396 PRO ASP PHE PRO THR HIS PHE PRO LYS SER SER ILE GLY SEQRES 3 A 396 ILE GLN ASN GLU LEU ALA GLY LEU VAL VAL ALA MET PRO SEQRES 4 A 396 ALA ASN SER ALA GLN LYS PHE GLY TYR VAL LYS SER ALA SEQRES 5 A 396 GLN GLY ASP ALA LEU PHE MET LEU THR LYS ASP MET ASN SEQRES 6 A 396 GLN GLY SER TYR GLN ARG PRO PRO SER LEU GLN ASP GLY SEQRES 7 A 396 LYS ASN TYR GLN ASN TRP GLN THR HIS THR VAL GLU LEU SEQRES 8 A 396 VAL SER TYR PRO CYS GLU MET ASP ASP LYS ALA ALA VAL SEQRES 9 A 396 GLU THR ARG LYS GLN ALA MET LEU TRP LEU ALA THR HIS SEQRES 10 A 396 PHE THR THR HIS ILE ASP GLN SER ASN HIS GLN PRO LEU SEQRES 11 A 396 ALA PRO ILE GLN SER GLU ASP GLY ARG PHE VAL ILE GLU SEQRES 12 A 396 ILE THR ASN ALA LYS HIS VAL ILE ALA ALA GLY ASN GLY SEQRES 13 A 396 ILE SER ALA GLU SER GLN GLY GLN THR ILE THR MET THR SEQRES 14 A 396 PRO SER GLY GLN GLN ALA THR VAL GLY VAL ALA ALA LYS SEQRES 15 A 396 GLY PHE GLY THR SER ALA THR PRO GLU LEU ARG LEU LEU SEQRES 16 A 396 GLU SER ALA PRO TRP TYR GLN LYS SER LEU LYS SER GLN SEQRES 17 A 396 PHE ALA SER LEU THR SER ALA GLU ASN LEU ASP ASP LYS SEQRES 18 A 396 GLU LEU ALA ALA ASN VAL PHE ALA TYR LEU THR SER ILE SEQRES 19 A 396 TYR LEU LYS THR ALA GLU LEU ALA LYS LYS PHE GLY ILE SEQRES 20 A 396 TYR ILE ASN GLU TRP ASP PRO MET SER GLU GLN ILE THR SEQRES 21 A 396 PRO ASN ALA ASN GLY LEU THR ASP PRO LYS VAL LYS ASN SEQRES 22 A 396 ALA TRP GLU ILE LEU PRO ARG THR LYS PRO SER LYS ILE SEQRES 23 A 396 VAL GLU ILE LEU SER LYS SER ASP ALA LYS ALA VAL MET SEQRES 24 A 396 LYS HIS ILE LYS PRO GLN LEU GLN SER ARG TYR SER GLU SEQRES 25 A 396 SER LEU SER LYS ASN VAL PHE GLN TYR PHE GLN ASP GLY SEQRES 26 A 396 GLY GLU VAL ALA GLY HIS GLY ILE ASN ASN ALA THR VAL SEQRES 27 A 396 GLY ASP LYS HIS SER PRO GLU LEU ALA ILE LEU PHE GLU SEQRES 28 A 396 PHE ARG THR VAL PRO ASN GLU LEU GLN SER TYR LEU PRO SEQRES 29 A 396 LYS THR GLU SER THR THR LYS SER GLU VAL LYS LEU LEU SEQRES 30 A 396 ASP GLN PHE ASP PRO MET LYS ARG LYS THR VAL ILE GLN SEQRES 31 A 396 GLN VAL GLU SER LEU VAL HET ADP A 401 27 HET MN A 402 1 HET SO4 A 403 5 HET SO4 A 404 5 HET SO4 A 405 5 HET SO4 A 406 5 HET SO4 A 407 5 HET SO4 A 408 5 HET SO4 A 409 5 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MN MANGANESE (II) ION HETNAM SO4 SULFATE ION FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 MN MN 2+ FORMUL 4 SO4 7(O4 S 2-) FORMUL 11 HOH *472(H2 O) HELIX 1 1 PRO A 60 GLN A 64 5 5 HELIX 2 2 ASP A 88 SER A 113 1 26 HELIX 3 3 THR A 157 SER A 159 5 3 HELIX 4 4 LYS A 170 PHE A 172 5 3 HELIX 5 5 THR A 177 SER A 185 1 9 HELIX 6 6 LYS A 191 THR A 201 1 11 HELIX 7 7 ASP A 208 GLY A 234 1 27 HELIX 8 8 ASP A 241 GLN A 246 5 6 HELIX 9 9 ASP A 256 GLU A 264 1 9 HELIX 10 10 LYS A 270 LEU A 278 5 9 HELIX 11 11 SER A 279 SER A 296 1 18 HELIX 12 12 SER A 299 ASP A 312 1 14 HELIX 13 13 PRO A 344 LEU A 351 5 8 LINK O3B ADP A 401 MN MN A 402 1555 1555 2.52 LINK MN MN A 402 O HOH A 809 1555 1555 2.04 LINK MN MN A 402 O HOH A 927 1555 1555 2.72 SITE 1 AC1 17 PHE A 4 SER A 12 GLY A 14 ILE A 15 SITE 2 AC1 17 GLN A 16 VAL A 80 SER A 81 PRO A 83 SITE 3 AC1 17 THR A 164 ILE A 321 LEU A 337 MN A 402 SITE 4 AC1 17 HOH A 510 HOH A 535 HOH A 917 HOH A 918 SITE 5 AC1 17 HOH A 924 SITE 1 AC2 4 GLU A 78 ADP A 401 HOH A 809 HOH A 927 SITE 1 AC3 7 GLN A 32 LYS A 50 GLY A 55 SER A 56 SITE 2 AC3 7 HOH A 512 HOH A 721 HOH A 852 SITE 1 AC4 6 PRO A 60 PRO A 61 SER A 62 ALA A 147 SITE 2 AC4 6 HOH A 588 HOH A 764 SITE 1 AC5 3 PRO A 178 ARG A 181 HOH A 851 SITE 1 AC6 3 GLN A 190 LYS A 191 SER A 192 SITE 1 AC7 6 PRO A 257 LYS A 260 ARG A 341 HOH A 755 SITE 2 AC7 6 HOH A 923 HOH A 936 SITE 1 AC8 8 ALA A 141 GLY A 142 ASN A 143 ILE A 145 SITE 2 AC8 8 SER A 146 HOH A 585 HOH A 686 HOH A 822 SITE 1 AC9 5 TRP A 101 HIS A 105 ILE A 121 GLU A 124 SITE 2 AC9 5 HOH A 777 CRYST1 129.130 129.130 77.110 90.00 90.00 90.00 P 43 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007744 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007744 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012968 0.00000