data_4E48 # _entry.id 4E48 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4E48 pdb_00004e48 10.2210/pdb4e48/pdb NDB NA1655 ? ? RCSB RCSB071148 ? ? WWPDB D_1000071148 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-07-11 2 'Structure model' 1 1 2012-08-29 3 'Structure model' 1 2 2017-11-15 4 'Structure model' 1 3 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.name' 2 4 'Structure model' '_database_2.pdbx_DOI' 3 4 'Structure model' '_database_2.pdbx_database_accession' 4 4 'Structure model' '_struct_conn.pdbx_dist_value' 5 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 6 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 7 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 8 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 9 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 10 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 11 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 12 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 13 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 14 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 4E48 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-03-12 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4E5C _pdbx_database_related.details 'crystal structure of RNA duplex containing CUG/CGG repeats' _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Katorcha, E.' 1 'Malinina, L.' 2 # _citation.id primary _citation.title 'Structural dynamics of double-helical RNAs composed of CUG/CUG- and CUG/CGG-repeats.' _citation.journal_abbrev J.Biomol.Struct.Dyn. _citation.journal_volume 30 _citation.page_first 505 _citation.page_last 523 _citation.year 2012 _citation.journal_id_ASTM JBSDD6 _citation.country US _citation.journal_id_ISSN 0739-1102 _citation.journal_id_CSD 0646 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22731704 _citation.pdbx_database_id_DOI 10.1080/07391102.2012.687517 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tamjar, J.' 1 ? primary 'Katorcha, E.' 2 ? primary 'Popov, A.' 3 ? primary 'Malinina, L.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-R(P*GP*CP*UP*GP*CP*UP*GP*CP*UP*GP*CP*UP*GP*CP*UP*GP*CP*UP*GP*C)-3'" 6344.751 3 ? ? ? 'pG(CUG)6C' 2 non-polymer syn 'SULFATE ION' 96.063 5 ? ? ? ? 3 non-polymer syn 'POTASSIUM ION' 39.098 2 ? ? ? ? 4 water nat water 18.015 94 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GCUGCUGCUGCUGCUGCUGC _entity_poly.pdbx_seq_one_letter_code_can GCUGCUGCUGCUGCUGCUGC _entity_poly.pdbx_strand_id A,B,D _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 'POTASSIUM ION' K 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 U n 1 4 G n 1 5 C n 1 6 U n 1 7 G n 1 8 C n 1 9 U n 1 10 G n 1 11 C n 1 12 U n 1 13 G n 1 14 C n 1 15 U n 1 16 G n 1 17 C n 1 18 U n 1 19 G n 1 20 C n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 C 2 2 2 C C A . n A 1 3 U 3 3 3 U U A . n A 1 4 G 4 4 4 G G A . n A 1 5 C 5 5 5 C C A . n A 1 6 U 6 6 6 U U A . n A 1 7 G 7 7 7 G G A . n A 1 8 C 8 8 8 C C A . n A 1 9 U 9 9 9 U U A . n A 1 10 G 10 10 10 G G A . n A 1 11 C 11 11 11 C C A . n A 1 12 U 12 12 12 U U A . n A 1 13 G 13 13 13 G G A . n A 1 14 C 14 14 14 C C A . n A 1 15 U 15 15 15 U U A . n A 1 16 G 16 16 16 G G A . n A 1 17 C 17 17 17 C C A . n A 1 18 U 18 18 18 U U A . n A 1 19 G 19 19 19 G G A . n A 1 20 C 20 20 20 C C A . n B 1 1 G 1 21 21 G G B . n B 1 2 C 2 22 22 C C B . n B 1 3 U 3 23 23 U U B . n B 1 4 G 4 24 24 G G B . n B 1 5 C 5 25 25 C C B . n B 1 6 U 6 26 26 U U B . n B 1 7 G 7 27 27 G G B . n B 1 8 C 8 28 28 C C B . n B 1 9 U 9 29 29 U U B . n B 1 10 G 10 30 30 G G B . n B 1 11 C 11 31 31 C C B . n B 1 12 U 12 32 32 U U B . n B 1 13 G 13 33 33 G G B . n B 1 14 C 14 34 34 C C B . n B 1 15 U 15 35 35 U U B . n B 1 16 G 16 36 36 G G B . n B 1 17 C 17 37 37 C C B . n B 1 18 U 18 38 38 U U B . n B 1 19 G 19 39 39 G G B . n B 1 20 C 20 40 40 C C B . n C 1 1 G 1 1 1 G G D . n C 1 2 C 2 2 2 C C D . n C 1 3 U 3 3 3 U U D . n C 1 4 G 4 4 4 G G D . n C 1 5 C 5 5 5 C C D . n C 1 6 U 6 6 6 U U D . n C 1 7 G 7 7 7 G G D . n C 1 8 C 8 8 8 C C D . n C 1 9 U 9 9 9 U U D . n C 1 10 G 10 10 10 G G D . n C 1 11 C 11 11 11 C C D . n C 1 12 U 12 12 12 U U D . n C 1 13 G 13 13 13 G G D . n C 1 14 C 14 14 14 C C D . n C 1 15 U 15 15 15 U U D . n C 1 16 G 16 16 16 G G D . n C 1 17 C 17 17 17 C C D . n C 1 18 U 18 18 18 U U D . n C 1 19 G 19 19 19 G G D . n C 1 20 C 20 20 20 C C D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 SO4 1 101 3 SO4 SO4 A . E 2 SO4 1 102 5 SO4 SO4 A . F 3 K 1 103 48 K K A . G 3 K 1 104 61 K K A . H 2 SO4 1 101 1 SO4 SO4 B . I 2 SO4 1 102 2 SO4 SO4 B . J 2 SO4 1 101 4 SO4 SO4 D . K 4 HOH 1 201 9 HOH HOH A . K 4 HOH 2 202 12 HOH HOH A . K 4 HOH 3 203 13 HOH HOH A . K 4 HOH 4 204 14 HOH HOH A . K 4 HOH 5 205 17 HOH HOH A . K 4 HOH 6 206 18 HOH HOH A . K 4 HOH 7 207 19 HOH HOH A . K 4 HOH 8 208 20 HOH HOH A . K 4 HOH 9 209 21 HOH HOH A . K 4 HOH 10 210 23 HOH HOH A . K 4 HOH 11 211 40 HOH HOH A . K 4 HOH 12 212 45 HOH HOH A . K 4 HOH 13 213 46 HOH HOH A . K 4 HOH 14 214 47 HOH HOH A . K 4 HOH 15 215 49 HOH HOH A . K 4 HOH 16 216 56 HOH HOH A . K 4 HOH 17 217 57 HOH HOH A . K 4 HOH 18 218 58 HOH HOH A . K 4 HOH 19 219 59 HOH HOH A . K 4 HOH 20 220 62 HOH HOH A . K 4 HOH 21 221 64 HOH HOH A . K 4 HOH 22 222 65 HOH HOH A . K 4 HOH 23 223 67 HOH HOH A . K 4 HOH 24 224 68 HOH HOH A . K 4 HOH 25 225 74 HOH HOH A . K 4 HOH 26 226 75 HOH HOH A . K 4 HOH 27 227 76 HOH HOH A . K 4 HOH 28 228 80 HOH HOH A . K 4 HOH 29 229 81 HOH HOH A . K 4 HOH 30 230 82 HOH HOH A . K 4 HOH 31 231 83 HOH HOH A . K 4 HOH 32 232 85 HOH HOH A . K 4 HOH 33 233 86 HOH HOH A . K 4 HOH 34 234 89 HOH HOH A . K 4 HOH 35 235 90 HOH HOH A . K 4 HOH 36 236 92 HOH HOH A . K 4 HOH 37 237 93 HOH HOH A . K 4 HOH 38 238 94 HOH HOH A . K 4 HOH 39 239 95 HOH HOH A . K 4 HOH 40 240 98 HOH HOH A . K 4 HOH 41 241 111 HOH HOH A . K 4 HOH 42 242 112 HOH HOH A . K 4 HOH 43 243 25 HOH HOH A . L 4 HOH 1 201 7 HOH HOH B . L 4 HOH 2 202 8 HOH HOH B . L 4 HOH 3 203 10 HOH HOH B . L 4 HOH 4 204 11 HOH HOH B . L 4 HOH 5 205 15 HOH HOH B . L 4 HOH 6 206 16 HOH HOH B . L 4 HOH 7 207 22 HOH HOH B . L 4 HOH 8 208 24 HOH HOH B . L 4 HOH 9 209 26 HOH HOH B . L 4 HOH 10 210 27 HOH HOH B . L 4 HOH 11 211 28 HOH HOH B . L 4 HOH 12 212 29 HOH HOH B . L 4 HOH 13 213 30 HOH HOH B . L 4 HOH 14 214 31 HOH HOH B . L 4 HOH 15 215 39 HOH HOH B . L 4 HOH 16 216 41 HOH HOH B . L 4 HOH 17 217 43 HOH HOH B . L 4 HOH 18 218 44 HOH HOH B . L 4 HOH 19 219 50 HOH HOH B . L 4 HOH 20 220 51 HOH HOH B . L 4 HOH 21 221 53 HOH HOH B . L 4 HOH 22 222 54 HOH HOH B . L 4 HOH 23 223 60 HOH HOH B . L 4 HOH 24 224 66 HOH HOH B . L 4 HOH 25 225 69 HOH HOH B . L 4 HOH 26 226 71 HOH HOH B . L 4 HOH 27 227 72 HOH HOH B . L 4 HOH 28 228 73 HOH HOH B . L 4 HOH 29 229 77 HOH HOH B . L 4 HOH 30 230 78 HOH HOH B . L 4 HOH 31 231 79 HOH HOH B . L 4 HOH 32 232 87 HOH HOH B . L 4 HOH 33 233 91 HOH HOH B . L 4 HOH 34 234 100 HOH HOH B . L 4 HOH 35 235 101 HOH HOH B . L 4 HOH 36 236 102 HOH HOH B . L 4 HOH 37 237 110 HOH HOH B . M 4 HOH 1 201 32 HOH HOH D . M 4 HOH 2 202 33 HOH HOH D . M 4 HOH 3 203 34 HOH HOH D . M 4 HOH 4 204 35 HOH HOH D . M 4 HOH 5 205 36 HOH HOH D . M 4 HOH 6 206 37 HOH HOH D . M 4 HOH 7 207 38 HOH HOH D . M 4 HOH 8 208 63 HOH HOH D . M 4 HOH 9 209 103 HOH HOH D . M 4 HOH 10 210 104 HOH HOH D . M 4 HOH 11 211 106 HOH HOH D . M 4 HOH 12 212 107 HOH HOH D . M 4 HOH 13 213 108 HOH HOH D . M 4 HOH 14 214 109 HOH HOH D . # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 REFMAC 5.2.0019 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 'PROTEUM PLUS' PLUS ? ? ? ? 'data collection' ? ? ? 4 DENZO . ? ? ? ? 'data reduction' ? ? ? 5 SCALEPACK . ? ? ? ? 'data scaling' ? ? ? 6 AMoRE . ? ? ? ? phasing ? ? ? # _cell.length_a 43.642 _cell.length_b 43.642 _cell.length_c 158.556 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 4E48 _cell.pdbx_unique_axis ? _cell.Z_PDB 18 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 3 2 1' _symmetry.entry_id 4E48 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 150 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 4E48 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.29 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 46.29 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 4.0 _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '1.6 mM ammonium sulfate, 0.1 M citric acid, pH 4.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAR scanner 345 mm plate' _diffrn_detector.pdbx_collection_date 2008-03-17 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'osmic mirror' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'Cu FINE FOCUS' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.54 _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 4E48 _reflns.observed_criterion_sigma_F 2 _reflns.observed_criterion_sigma_I 2 _reflns.d_resolution_high 2.5 _reflns.d_resolution_low 20 _reflns.number_all 6607 _reflns.number_obs 6468 _reflns.percent_possible_obs 98.3 _reflns.pdbx_Rmerge_I_obs 0.103 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 11.1 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.5 _reflns_shell.d_res_low 2.59 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 92.4 _reflns_shell.Rmerge_I_obs 0.476 _reflns_shell.meanI_over_sigI_obs 2.3 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy 3.3 _reflns_shell.number_unique_all 175 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4E48 _refine.ls_d_res_high 2.500 _refine.ls_d_res_low 15.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 98.29 _refine.ls_number_reflns_obs 6442 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2067 _refine.ls_R_factor_R_work 0.2033 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2793 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 307 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 24.9698 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.7800 _refine.aniso_B[2][2] 0.7800 _refine.aniso_B[3][3] -1.1700 _refine.aniso_B[1][2] 0.3900 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9520 _refine.correlation_coeff_Fo_to_Fc_free 0.8950 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.8000 _refine.pdbx_overall_ESU_R_Free 0.3400 _refine.overall_SU_ML 0.2050 _refine.overall_SU_B 9.5400 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 72.480 _refine.B_iso_min 2.000 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.330 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1266 _refine_hist.pdbx_number_atoms_ligand 27 _refine_hist.number_atoms_solvent 94 _refine_hist.number_atoms_total 1387 _refine_hist.d_res_high 2.500 _refine_hist.d_res_low 15.0 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 1424 0.007 0.021 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 498 0.003 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2214 1.553 3.000 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 1296 1.015 3.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 300 0.050 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 603 0.004 0.020 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 138 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_nbd_refined 170 0.124 0.200 ? ? 'X-RAY DIFFRACTION' r_nbd_other 674 0.230 0.200 ? ? 'X-RAY DIFFRACTION' r_nbtor_refined 561 0.225 0.200 ? ? 'X-RAY DIFFRACTION' r_nbtor_other 350 0.066 0.200 ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined 72 0.163 0.200 ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined 42 0.224 0.200 ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_other 91 0.277 0.200 ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined 37 0.164 0.200 ? ? 'X-RAY DIFFRACTION' r_scbond_it 1500 0.908 3.000 ? ? 'X-RAY DIFFRACTION' r_scangle_it 2214 1.341 4.500 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 2.50 _refine_ls_shell.d_res_low 2.565 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 91.74 _refine_ls_shell.number_reflns_R_work 402 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2840 _refine_ls_shell.R_factor_R_free 0.4400 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 31 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 433 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4E48 _struct.title 'Structure of 20mer double-helical RNA composed of CUG/CUG-repeats' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4E48 _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'siRNA, trinucleotide repeat expansion, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 3 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 4 ? L N N 4 ? M N N 4 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4E48 _struct_ref.pdbx_db_accession 4E48 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code GCUGCUGCUGCUGCUGCUGC _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4E48 A 1 ? 20 ? 4E48 1 ? 20 ? 1 20 2 1 4E48 B 1 ? 20 ? 4E48 21 ? 40 ? 21 40 3 1 4E48 D 1 ? 20 ? 4E48 1 ? 20 ? 1 20 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2700 ? 1 MORE -77 ? 1 'SSA (A^2)' 7360 ? 2 'ABSA (A^2)' 2360 ? 2 MORE -53 ? 2 'SSA (A^2)' 7260 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,D,E,F,G,H,I,K,L 2 1,2 C,J,M # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 158.5560000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A C 8 "O2'" ? ? ? 1_555 F K . K ? ? A C 8 A K 103 1_555 ? ? ? ? ? ? ? 2.863 ? ? metalc2 metalc ? ? A C 8 "O3'" ? ? ? 1_555 F K . K ? ? A C 8 A K 103 1_555 ? ? ? ? ? ? ? 3.212 ? ? metalc3 metalc ? ? A G 19 "O3'" ? ? ? 1_555 G K . K ? ? A G 19 A K 104 1_555 ? ? ? ? ? ? ? 3.128 ? ? metalc4 metalc ? ? A G 19 "O2'" ? ? ? 1_555 G K . K ? ? A G 19 A K 104 1_555 ? ? ? ? ? ? ? 3.193 ? ? metalc5 metalc ? ? F K . K ? ? ? 1_555 K HOH . O ? ? A K 103 A HOH 214 1_555 ? ? ? ? ? ? ? 3.109 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 B C 20 N3 ? ? A G 1 B C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 B C 20 O2 ? ? A G 1 B C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 B C 20 N4 ? ? A G 1 B C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 B G 19 N1 ? ? A C 2 B G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 B G 19 O6 ? ? A C 2 B G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 B G 19 N2 ? ? A C 2 B G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 3 N3 ? ? ? 1_555 B U 18 O4 ? ? A U 3 B U 38 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog8 hydrog ? ? A G 4 N1 ? ? ? 1_555 B C 17 N3 ? ? A G 4 B C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 N2 ? ? ? 1_555 B C 17 O2 ? ? A G 4 B C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 O6 ? ? ? 1_555 B C 17 N4 ? ? A G 4 B C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 5 N3 ? ? ? 1_555 B G 16 N1 ? ? A C 5 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 5 N4 ? ? ? 1_555 B G 16 O6 ? ? A C 5 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 O2 ? ? ? 1_555 B G 16 N2 ? ? A C 5 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A U 6 O4 ? ? ? 1_555 B U 15 N3 ? ? A U 6 B U 35 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog15 hydrog ? ? A G 7 N1 ? ? ? 1_555 B C 14 N3 ? ? A G 7 B C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 7 N2 ? ? ? 1_555 B C 14 O2 ? ? A G 7 B C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 7 O6 ? ? ? 1_555 B C 14 N4 ? ? A G 7 B C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 8 N3 ? ? ? 1_555 B G 13 N1 ? ? A C 8 B G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 8 N4 ? ? ? 1_555 B G 13 O6 ? ? A C 8 B G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 8 O2 ? ? ? 1_555 B G 13 N2 ? ? A C 8 B G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A U 9 N3 ? ? ? 1_555 B U 12 O4 ? ? A U 9 B U 32 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog22 hydrog ? ? A G 10 N1 ? ? ? 1_555 B C 11 N3 ? ? A G 10 B C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 10 N2 ? ? ? 1_555 B C 11 O2 ? ? A G 10 B C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 10 O6 ? ? ? 1_555 B C 11 N4 ? ? A G 10 B C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 11 N3 ? ? ? 1_555 B G 10 N1 ? ? A C 11 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 11 N4 ? ? ? 1_555 B G 10 O6 ? ? A C 11 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 11 O2 ? ? ? 1_555 B G 10 N2 ? ? A C 11 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A U 12 O4 ? ? ? 1_555 B U 9 N3 ? ? A U 12 B U 29 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog29 hydrog ? ? A G 13 N1 ? ? ? 1_555 B C 8 N3 ? ? A G 13 B C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 13 N2 ? ? ? 1_555 B C 8 O2 ? ? A G 13 B C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 13 O6 ? ? ? 1_555 B C 8 N4 ? ? A G 13 B C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 14 N3 ? ? ? 1_555 B G 7 N1 ? ? A C 14 B G 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 14 N4 ? ? ? 1_555 B G 7 O6 ? ? A C 14 B G 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 14 O2 ? ? ? 1_555 B G 7 N2 ? ? A C 14 B G 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A U 15 N3 ? ? ? 1_555 B U 6 O4 ? ? A U 15 B U 26 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog36 hydrog ? ? A G 16 N1 ? ? ? 1_555 B C 5 N3 ? ? A G 16 B C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 16 N2 ? ? ? 1_555 B C 5 O2 ? ? A G 16 B C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 16 O6 ? ? ? 1_555 B C 5 N4 ? ? A G 16 B C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A C 17 N3 ? ? ? 1_555 B G 4 N1 ? ? A C 17 B G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A C 17 N4 ? ? ? 1_555 B G 4 O6 ? ? A C 17 B G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 17 O2 ? ? ? 1_555 B G 4 N2 ? ? A C 17 B G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A U 18 O4 ? ? ? 1_555 B U 3 N3 ? ? A U 18 B U 23 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog43 hydrog ? ? A G 19 N1 ? ? ? 1_555 B C 2 N3 ? ? A G 19 B C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 19 N2 ? ? ? 1_555 B C 2 O2 ? ? A G 19 B C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 19 O6 ? ? ? 1_555 B C 2 N4 ? ? A G 19 B C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 20 N3 ? ? ? 1_555 B G 1 N1 ? ? A C 20 B G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 20 N4 ? ? ? 1_555 B G 1 O6 ? ? A C 20 B G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A C 20 O2 ? ? ? 1_555 B G 1 N2 ? ? A C 20 B G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? C G 1 N1 ? ? ? 1_555 C C 20 N3 ? ? D G 1 D C 20 4_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? C G 1 N2 ? ? ? 1_555 C C 20 O2 ? ? D G 1 D C 20 4_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? C G 1 O6 ? ? ? 1_555 C C 20 N4 ? ? D G 1 D C 20 4_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? C C 2 N3 ? ? ? 1_555 C G 19 N1 ? ? D C 2 D G 19 4_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? C C 2 N4 ? ? ? 1_555 C G 19 O6 ? ? D C 2 D G 19 4_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? C C 2 O2 ? ? ? 1_555 C G 19 N2 ? ? D C 2 D G 19 4_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? C U 3 N3 ? ? ? 1_555 C U 18 O4 ? ? D U 3 D U 18 4_556 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog56 hydrog ? ? C G 4 N1 ? ? ? 1_555 C C 17 N3 ? ? D G 4 D C 17 4_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? C G 4 N2 ? ? ? 1_555 C C 17 O2 ? ? D G 4 D C 17 4_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? C G 4 O6 ? ? ? 1_555 C C 17 N4 ? ? D G 4 D C 17 4_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? C C 5 N3 ? ? ? 1_555 C G 16 N1 ? ? D C 5 D G 16 4_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? C C 5 N4 ? ? ? 1_555 C G 16 O6 ? ? D C 5 D G 16 4_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? C C 5 O2 ? ? ? 1_555 C G 16 N2 ? ? D C 5 D G 16 4_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? C U 6 O4 ? ? ? 1_555 C U 15 N3 ? ? D U 6 D U 15 4_556 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog63 hydrog ? ? C G 7 N1 ? ? ? 1_555 C C 14 N3 ? ? D G 7 D C 14 4_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? C G 7 N2 ? ? ? 1_555 C C 14 O2 ? ? D G 7 D C 14 4_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? C G 7 O6 ? ? ? 1_555 C C 14 N4 ? ? D G 7 D C 14 4_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? C C 8 N3 ? ? ? 1_555 C G 13 N1 ? ? D C 8 D G 13 4_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? C C 8 N4 ? ? ? 1_555 C G 13 O6 ? ? D C 8 D G 13 4_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? C C 8 O2 ? ? ? 1_555 C G 13 N2 ? ? D C 8 D G 13 4_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? C U 9 N3 ? ? ? 1_555 C U 12 O4 ? ? D U 9 D U 12 4_556 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog70 hydrog ? ? C G 10 N1 ? ? ? 1_555 C C 11 N3 ? ? D G 10 D C 11 4_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? C G 10 N2 ? ? ? 1_555 C C 11 O2 ? ? D G 10 D C 11 4_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? C G 10 O6 ? ? ? 1_555 C C 11 N4 ? ? D G 10 D C 11 4_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? C C 11 N3 ? ? ? 1_555 C G 10 N1 ? ? D C 11 D G 10 4_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? C C 11 N4 ? ? ? 1_555 C G 10 O6 ? ? D C 11 D G 10 4_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? C C 11 O2 ? ? ? 1_555 C G 10 N2 ? ? D C 11 D G 10 4_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? C U 12 O4 ? ? ? 1_555 C U 9 N3 ? ? D U 12 D U 9 4_556 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog77 hydrog ? ? C G 13 N1 ? ? ? 1_555 C C 8 N3 ? ? D G 13 D C 8 4_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? C G 13 N2 ? ? ? 1_555 C C 8 O2 ? ? D G 13 D C 8 4_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? C G 13 O6 ? ? ? 1_555 C C 8 N4 ? ? D G 13 D C 8 4_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? C C 14 N3 ? ? ? 1_555 C G 7 N1 ? ? D C 14 D G 7 4_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? C C 14 N4 ? ? ? 1_555 C G 7 O6 ? ? D C 14 D G 7 4_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? C C 14 O2 ? ? ? 1_555 C G 7 N2 ? ? D C 14 D G 7 4_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? C U 15 N3 ? ? ? 1_555 C U 6 O4 ? ? D U 15 D U 6 4_556 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog84 hydrog ? ? C G 16 N1 ? ? ? 1_555 C C 5 N3 ? ? D G 16 D C 5 4_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? C G 16 N2 ? ? ? 1_555 C C 5 O2 ? ? D G 16 D C 5 4_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? C G 16 O6 ? ? ? 1_555 C C 5 N4 ? ? D G 16 D C 5 4_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? C C 17 N3 ? ? ? 1_555 C G 4 N1 ? ? D C 17 D G 4 4_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? C C 17 N4 ? ? ? 1_555 C G 4 O6 ? ? D C 17 D G 4 4_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? C C 17 O2 ? ? ? 1_555 C G 4 N2 ? ? D C 17 D G 4 4_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? C U 18 O4 ? ? ? 1_555 C U 3 N3 ? ? D U 18 D U 3 4_556 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog91 hydrog ? ? C G 19 N1 ? ? ? 1_555 C C 2 N3 ? ? D G 19 D C 2 4_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? C G 19 N2 ? ? ? 1_555 C C 2 O2 ? ? D G 19 D C 2 4_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? C G 19 O6 ? ? ? 1_555 C C 2 N4 ? ? D G 19 D C 2 4_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? C C 20 N3 ? ? ? 1_555 C G 1 N1 ? ? D C 20 D G 1 4_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? C C 20 N4 ? ? ? 1_555 C G 1 O6 ? ? D C 20 D G 1 4_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? C C 20 O2 ? ? ? 1_555 C G 1 N2 ? ? D C 20 D G 1 4_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 "O2'" ? A C 8 ? A C 8 ? 1_555 K ? F K . ? A K 103 ? 1_555 "O3'" ? A C 8 ? A C 8 ? 1_555 55.7 ? 2 "O2'" ? A C 8 ? A C 8 ? 1_555 K ? F K . ? A K 103 ? 1_555 O ? K HOH . ? A HOH 214 ? 1_555 128.6 ? 3 "O3'" ? A C 8 ? A C 8 ? 1_555 K ? F K . ? A K 103 ? 1_555 O ? K HOH . ? A HOH 214 ? 1_555 83.8 ? 4 "O3'" ? A G 19 ? A G 19 ? 1_555 K ? G K . ? A K 104 ? 1_555 "O2'" ? A G 19 ? A G 19 ? 1_555 55.5 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 101 ? 5 'BINDING SITE FOR RESIDUE SO4 A 101' AC2 Software A SO4 102 ? 7 'BINDING SITE FOR RESIDUE SO4 A 102' AC3 Software A K 103 ? 3 'BINDING SITE FOR RESIDUE K A 103' AC4 Software A K 104 ? 6 'BINDING SITE FOR RESIDUE K A 104' AC5 Software B SO4 101 ? 6 'BINDING SITE FOR RESIDUE SO4 B 101' AC6 Software B SO4 102 ? 6 'BINDING SITE FOR RESIDUE SO4 B 102' AC7 Software D SO4 101 ? 4 'BINDING SITE FOR RESIDUE SO4 D 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 U A 12 ? U A 12 . ? 1_555 ? 2 AC1 5 HOH K . ? HOH A 229 . ? 1_555 ? 3 AC1 5 G B 10 ? G B 30 . ? 1_555 ? 4 AC1 5 C B 11 ? C B 31 . ? 1_555 ? 5 AC1 5 HOH L . ? HOH B 208 . ? 1_555 ? 6 AC2 7 G A 13 ? G A 13 . ? 1_555 ? 7 AC2 7 C A 14 ? C A 14 . ? 1_555 ? 8 AC2 7 C A 14 ? C A 14 . ? 3_555 ? 9 AC2 7 C A 14 ? C A 14 . ? 2_555 ? 10 AC2 7 HOH K . ? HOH A 232 . ? 2_555 ? 11 AC2 7 HOH K . ? HOH A 232 . ? 3_555 ? 12 AC2 7 HOH K . ? HOH A 232 . ? 1_555 ? 13 AC3 3 C A 8 ? C A 8 . ? 1_555 ? 14 AC3 3 C A 8 ? C A 8 . ? 3_565 ? 15 AC3 3 C A 8 ? C A 8 . ? 2_665 ? 16 AC4 6 G A 19 ? G A 19 . ? 3_565 ? 17 AC4 6 G A 19 ? G A 19 . ? 1_555 ? 18 AC4 6 G A 19 ? G A 19 . ? 2_665 ? 19 AC4 6 C A 20 ? C A 20 . ? 1_555 ? 20 AC4 6 C A 20 ? C A 20 . ? 2_665 ? 21 AC4 6 C A 20 ? C A 20 . ? 3_565 ? 22 AC5 6 G A 4 ? G A 4 . ? 1_555 ? 23 AC5 6 C A 5 ? C A 5 . ? 1_555 ? 24 AC5 6 HOH K . ? HOH A 224 . ? 2_555 ? 25 AC5 6 U B 18 ? U B 38 . ? 1_555 ? 26 AC5 6 SO4 I . ? SO4 B 102 . ? 1_555 ? 27 AC5 6 HOH L . ? HOH B 225 . ? 1_555 ? 28 AC6 6 U A 6 ? U A 6 . ? 1_555 ? 29 AC6 6 G B 16 ? G B 36 . ? 1_555 ? 30 AC6 6 C B 17 ? C B 37 . ? 1_555 ? 31 AC6 6 SO4 H . ? SO4 B 101 . ? 1_555 ? 32 AC6 6 HOH L . ? HOH B 206 . ? 1_555 ? 33 AC6 6 HOH L . ? HOH B 225 . ? 1_555 ? 34 AC7 4 U C 6 ? U D 6 . ? 4_556 ? 35 AC7 4 G C 16 ? G D 16 . ? 1_555 ? 36 AC7 4 C C 17 ? C D 17 . ? 1_555 ? 37 AC7 4 HOH M . ? HOH D 210 . ? 4_556 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 P A G 1 ? ? OP3 A G 1 ? ? 1.481 1.607 -0.126 0.012 N 2 1 P B G 21 ? ? OP3 B G 21 ? ? 1.486 1.607 -0.121 0.012 N 3 1 P D G 1 ? ? OP3 D G 1 ? ? 1.482 1.607 -0.125 0.012 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 OP1 A G 1 ? ? P A G 1 ? ? OP2 A G 1 ? ? 107.41 119.60 -12.19 1.50 N 2 1 "C5'" A U 9 ? ? "C4'" A U 9 ? ? "O4'" A U 9 ? ? 116.17 109.80 6.37 0.90 N 3 1 OP1 B G 21 ? ? P B G 21 ? ? OP2 B G 21 ? ? 107.95 119.60 -11.65 1.50 N 4 1 "O4'" B C 40 ? ? "C1'" B C 40 ? ? N1 B C 40 ? ? 112.72 108.50 4.22 0.70 N 5 1 OP1 D G 1 ? ? P D G 1 ? ? OP2 D G 1 ? ? 109.23 119.60 -10.37 1.50 N # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A SO4 102 ? E SO4 . 2 1 A SO4 102 ? E SO4 . 3 1 A K 103 ? F K . 4 1 A K 104 ? G K . 5 1 A HOH 203 ? K HOH . 6 1 A HOH 211 ? K HOH . 7 1 A HOH 214 ? K HOH . 8 1 A HOH 216 ? K HOH . 9 1 A HOH 240 ? K HOH . 10 1 A HOH 241 ? K HOH . 11 1 B HOH 205 ? L HOH . 12 1 B HOH 209 ? L HOH . 13 1 B HOH 213 ? L HOH . 14 1 B HOH 223 ? L HOH . 15 1 B HOH 230 ? L HOH . 16 1 B HOH 231 ? L HOH . 17 1 B HOH 237 ? L HOH . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal C OP3 O N N 1 C P P N N 2 C OP1 O N N 3 C OP2 O N N 4 C "O5'" O N N 5 C "C5'" C N N 6 C "C4'" C N R 7 C "O4'" O N N 8 C "C3'" C N S 9 C "O3'" O N N 10 C "C2'" C N R 11 C "O2'" O N N 12 C "C1'" C N R 13 C N1 N N N 14 C C2 C N N 15 C O2 O N N 16 C N3 N N N 17 C C4 C N N 18 C N4 N N N 19 C C5 C N N 20 C C6 C N N 21 C HOP3 H N N 22 C HOP2 H N N 23 C "H5'" H N N 24 C "H5''" H N N 25 C "H4'" H N N 26 C "H3'" H N N 27 C "HO3'" H N N 28 C "H2'" H N N 29 C "HO2'" H N N 30 C "H1'" H N N 31 C H41 H N N 32 C H42 H N N 33 C H5 H N N 34 C H6 H N N 35 G OP3 O N N 36 G P P N N 37 G OP1 O N N 38 G OP2 O N N 39 G "O5'" O N N 40 G "C5'" C N N 41 G "C4'" C N R 42 G "O4'" O N N 43 G "C3'" C N S 44 G "O3'" O N N 45 G "C2'" C N R 46 G "O2'" O N N 47 G "C1'" C N R 48 G N9 N Y N 49 G C8 C Y N 50 G N7 N Y N 51 G C5 C Y N 52 G C6 C N N 53 G O6 O N N 54 G N1 N N N 55 G C2 C N N 56 G N2 N N N 57 G N3 N N N 58 G C4 C Y N 59 G HOP3 H N N 60 G HOP2 H N N 61 G "H5'" H N N 62 G "H5''" H N N 63 G "H4'" H N N 64 G "H3'" H N N 65 G "HO3'" H N N 66 G "H2'" H N N 67 G "HO2'" H N N 68 G "H1'" H N N 69 G H8 H N N 70 G H1 H N N 71 G H21 H N N 72 G H22 H N N 73 HOH O O N N 74 HOH H1 H N N 75 HOH H2 H N N 76 K K K N N 77 SO4 S S N N 78 SO4 O1 O N N 79 SO4 O2 O N N 80 SO4 O3 O N N 81 SO4 O4 O N N 82 U OP3 O N N 83 U P P N N 84 U OP1 O N N 85 U OP2 O N N 86 U "O5'" O N N 87 U "C5'" C N N 88 U "C4'" C N R 89 U "O4'" O N N 90 U "C3'" C N S 91 U "O3'" O N N 92 U "C2'" C N R 93 U "O2'" O N N 94 U "C1'" C N R 95 U N1 N N N 96 U C2 C N N 97 U O2 O N N 98 U N3 N N N 99 U C4 C N N 100 U O4 O N N 101 U C5 C N N 102 U C6 C N N 103 U HOP3 H N N 104 U HOP2 H N N 105 U "H5'" H N N 106 U "H5''" H N N 107 U "H4'" H N N 108 U "H3'" H N N 109 U "HO3'" H N N 110 U "H2'" H N N 111 U "HO2'" H N N 112 U "H1'" H N N 113 U H3 H N N 114 U H5 H N N 115 U H6 H N N 116 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal C OP3 P sing N N 1 C OP3 HOP3 sing N N 2 C P OP1 doub N N 3 C P OP2 sing N N 4 C P "O5'" sing N N 5 C OP2 HOP2 sing N N 6 C "O5'" "C5'" sing N N 7 C "C5'" "C4'" sing N N 8 C "C5'" "H5'" sing N N 9 C "C5'" "H5''" sing N N 10 C "C4'" "O4'" sing N N 11 C "C4'" "C3'" sing N N 12 C "C4'" "H4'" sing N N 13 C "O4'" "C1'" sing N N 14 C "C3'" "O3'" sing N N 15 C "C3'" "C2'" sing N N 16 C "C3'" "H3'" sing N N 17 C "O3'" "HO3'" sing N N 18 C "C2'" "O2'" sing N N 19 C "C2'" "C1'" sing N N 20 C "C2'" "H2'" sing N N 21 C "O2'" "HO2'" sing N N 22 C "C1'" N1 sing N N 23 C "C1'" "H1'" sing N N 24 C N1 C2 sing N N 25 C N1 C6 sing N N 26 C C2 O2 doub N N 27 C C2 N3 sing N N 28 C N3 C4 doub N N 29 C C4 N4 sing N N 30 C C4 C5 sing N N 31 C N4 H41 sing N N 32 C N4 H42 sing N N 33 C C5 C6 doub N N 34 C C5 H5 sing N N 35 C C6 H6 sing N N 36 G OP3 P sing N N 37 G OP3 HOP3 sing N N 38 G P OP1 doub N N 39 G P OP2 sing N N 40 G P "O5'" sing N N 41 G OP2 HOP2 sing N N 42 G "O5'" "C5'" sing N N 43 G "C5'" "C4'" sing N N 44 G "C5'" "H5'" sing N N 45 G "C5'" "H5''" sing N N 46 G "C4'" "O4'" sing N N 47 G "C4'" "C3'" sing N N 48 G "C4'" "H4'" sing N N 49 G "O4'" "C1'" sing N N 50 G "C3'" "O3'" sing N N 51 G "C3'" "C2'" sing N N 52 G "C3'" "H3'" sing N N 53 G "O3'" "HO3'" sing N N 54 G "C2'" "O2'" sing N N 55 G "C2'" "C1'" sing N N 56 G "C2'" "H2'" sing N N 57 G "O2'" "HO2'" sing N N 58 G "C1'" N9 sing N N 59 G "C1'" "H1'" sing N N 60 G N9 C8 sing Y N 61 G N9 C4 sing Y N 62 G C8 N7 doub Y N 63 G C8 H8 sing N N 64 G N7 C5 sing Y N 65 G C5 C6 sing N N 66 G C5 C4 doub Y N 67 G C6 O6 doub N N 68 G C6 N1 sing N N 69 G N1 C2 sing N N 70 G N1 H1 sing N N 71 G C2 N2 sing N N 72 G C2 N3 doub N N 73 G N2 H21 sing N N 74 G N2 H22 sing N N 75 G N3 C4 sing N N 76 HOH O H1 sing N N 77 HOH O H2 sing N N 78 SO4 S O1 doub N N 79 SO4 S O2 doub N N 80 SO4 S O3 sing N N 81 SO4 S O4 sing N N 82 U OP3 P sing N N 83 U OP3 HOP3 sing N N 84 U P OP1 doub N N 85 U P OP2 sing N N 86 U P "O5'" sing N N 87 U OP2 HOP2 sing N N 88 U "O5'" "C5'" sing N N 89 U "C5'" "C4'" sing N N 90 U "C5'" "H5'" sing N N 91 U "C5'" "H5''" sing N N 92 U "C4'" "O4'" sing N N 93 U "C4'" "C3'" sing N N 94 U "C4'" "H4'" sing N N 95 U "O4'" "C1'" sing N N 96 U "C3'" "O3'" sing N N 97 U "C3'" "C2'" sing N N 98 U "C3'" "H3'" sing N N 99 U "O3'" "HO3'" sing N N 100 U "C2'" "O2'" sing N N 101 U "C2'" "C1'" sing N N 102 U "C2'" "H2'" sing N N 103 U "O2'" "HO2'" sing N N 104 U "C1'" N1 sing N N 105 U "C1'" "H1'" sing N N 106 U N1 C2 sing N N 107 U N1 C6 sing N N 108 U C2 O2 doub N N 109 U C2 N3 sing N N 110 U N3 C4 sing N N 111 U N3 H3 sing N N 112 U C4 O4 doub N N 113 U C4 C5 sing N N 114 U C5 C6 doub N N 115 U C5 H5 sing N N 116 U C6 H6 sing N N 117 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4E48 'double helix' 4E48 'a-form double helix' 4E48 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 B C 20 1_555 -0.588 -0.050 0.145 -2.214 -11.873 -3.421 1 A_G1:C40_B A 1 ? B 40 ? 19 1 1 A C 2 1_555 B G 19 1_555 0.298 -0.128 -0.251 3.086 -12.807 -0.727 2 A_C2:G39_B A 2 ? B 39 ? 19 1 1 A U 3 1_555 B U 18 1_555 2.230 -1.230 -0.204 -5.124 -13.360 -25.106 3 A_U3:U38_B A 3 ? B 38 ? ? ? 1 A G 4 1_555 B C 17 1_555 -0.490 -0.194 -0.034 -1.615 -0.702 -1.531 4 A_G4:C37_B A 4 ? B 37 ? 19 1 1 A C 5 1_555 B G 16 1_555 0.564 -0.149 -0.027 2.861 -0.712 -0.093 5 A_C5:G36_B A 5 ? B 36 ? 19 1 1 A U 6 1_555 B U 15 1_555 -2.390 -1.182 -0.405 7.720 -11.620 -26.251 6 A_U6:U35_B A 6 ? B 35 ? ? ? 1 A G 7 1_555 B C 14 1_555 -0.381 -0.164 0.016 -0.755 -9.050 1.810 7 A_G7:C34_B A 7 ? B 34 ? 19 1 1 A C 8 1_555 B G 13 1_555 0.531 -0.354 -0.137 1.029 -8.877 -7.020 8 A_C8:G33_B A 8 ? B 33 ? 19 1 1 A U 9 1_555 B U 12 1_555 2.689 -1.240 -0.203 -4.774 -8.964 -23.624 9 A_U9:U32_B A 9 ? B 32 ? ? ? 1 A G 10 1_555 B C 11 1_555 -0.362 -0.079 0.085 -2.321 -7.429 -1.556 10 A_G10:C31_B A 10 ? B 31 ? 19 1 1 A C 11 1_555 B G 10 1_555 0.650 -0.177 0.032 3.380 -7.659 -1.017 11 A_C11:G30_B A 11 ? B 30 ? 19 1 1 A U 12 1_555 B U 9 1_555 -2.165 -1.247 -0.545 3.538 -16.134 -19.350 12 A_U12:U29_B A 12 ? B 29 ? ? ? 1 A G 13 1_555 B C 8 1_555 -0.140 -0.288 0.183 -2.219 -10.448 -1.512 13 A_G13:C28_B A 13 ? B 28 ? 19 1 1 A C 14 1_555 B G 7 1_555 0.732 -0.332 0.098 -3.862 -10.270 -9.077 14 A_C14:G27_B A 14 ? B 27 ? 19 1 1 A U 15 1_555 B U 6 1_555 2.309 -1.102 -0.229 -2.392 -9.233 -24.271 15 A_U15:U26_B A 15 ? B 26 ? ? ? 1 A G 16 1_555 B C 5 1_555 -0.374 -0.151 0.039 -1.426 -7.936 0.124 16 A_G16:C25_B A 16 ? B 25 ? 19 1 1 A C 17 1_555 B G 4 1_555 0.606 -0.240 0.233 -2.346 -18.644 2.587 17 A_C17:G24_B A 17 ? B 24 ? 19 1 1 A U 18 1_555 B U 3 1_555 -1.408 -1.385 0.270 2.130 -11.843 2.528 18 A_U18:U23_B A 18 ? B 23 ? ? ? 1 A G 19 1_555 B C 2 1_555 -0.843 -0.218 -0.189 -0.565 -9.765 2.505 19 A_G19:C22_B A 19 ? B 22 ? 19 1 1 A C 20 1_555 B G 1 1_555 0.449 -0.024 -0.279 6.642 1.577 4.604 20 A_C20:G21_B A 20 ? B 21 ? 19 1 1 C G 1 1_555 C C 20 4_556 -0.567 0.066 0.147 -6.768 -10.223 6.433 21 D_G1:C20_D D 1 ? D 20 ? 19 1 1 C C 2 1_555 C G 19 4_556 1.120 -0.075 0.387 0.635 -12.833 3.233 22 D_C2:G19_D D 2 ? D 19 ? 19 1 1 C U 3 1_555 C U 18 4_556 0.766 -1.137 0.023 1.847 -13.821 -11.147 23 D_U3:U18_D D 3 ? D 18 ? ? ? 1 C G 4 1_555 C C 17 4_556 -0.275 -0.151 -0.034 -2.703 -14.057 -2.641 24 D_G4:C17_D D 4 ? D 17 ? 19 1 1 C C 5 1_555 C G 16 4_556 0.712 -0.208 -0.055 3.717 -7.638 -0.701 25 D_C5:G16_D D 5 ? D 16 ? 19 1 1 C U 6 1_555 C U 15 4_556 -2.620 -1.392 -0.366 2.235 -11.713 -22.994 26 D_U6:U15_D D 6 ? D 15 ? ? ? 1 C G 7 1_555 C C 14 4_556 -0.624 -0.109 0.071 2.668 -7.259 0.574 27 D_G7:C14_D D 7 ? D 14 ? 19 1 1 C C 8 1_555 C G 13 4_556 1.091 -0.357 -0.191 3.614 -12.465 -1.466 28 D_C8:G13_D D 8 ? D 13 ? 19 1 1 C U 9 1_555 C U 12 4_556 1.834 -1.363 -0.059 -3.662 -7.096 -19.412 29 D_U9:U12_D D 9 ? D 12 ? ? ? 1 C G 10 1_555 C C 11 4_556 -0.619 -0.135 0.102 -4.542 -7.596 0.369 30 D_G10:C11_D D 10 ? D 11 ? 19 1 1 C C 11 1_555 C G 10 4_556 0.619 -0.135 0.102 4.542 -7.596 0.369 31 D_C11:G10_D D 11 ? D 10 ? 19 1 1 C U 12 1_555 C U 9 4_556 -1.834 -1.363 -0.059 3.662 -7.096 -19.412 32 D_U12:U9_D D 12 ? D 9 ? ? ? 1 C G 13 1_555 C C 8 4_556 -1.091 -0.357 -0.191 -3.614 -12.465 -1.466 33 D_G13:C8_D D 13 ? D 8 ? 19 1 1 C C 14 1_555 C G 7 4_556 0.624 -0.109 0.071 -2.668 -7.259 0.574 34 D_C14:G7_D D 14 ? D 7 ? 19 1 1 C U 15 1_555 C U 6 4_556 2.620 -1.392 -0.366 -2.235 -11.713 -22.994 35 D_U15:U6_D D 15 ? D 6 ? ? ? 1 C G 16 1_555 C C 5 4_556 -0.712 -0.208 -0.055 -3.718 -7.637 -0.701 36 D_G16:C5_D D 16 ? D 5 ? 19 1 1 C C 17 1_555 C G 4 4_556 0.275 -0.151 -0.034 2.703 -14.057 -2.641 37 D_C17:G4_D D 17 ? D 4 ? 19 1 1 C U 18 1_555 C U 3 4_556 -0.766 -1.137 0.023 -1.847 -13.821 -11.147 38 D_U18:U3_D D 18 ? D 3 ? ? ? 1 C G 19 1_555 C C 2 4_556 -1.120 -0.075 0.387 -0.635 -12.833 3.233 39 D_G19:C2_D D 19 ? D 2 ? 19 1 1 C C 20 1_555 C G 1 4_556 0.567 0.066 0.147 6.768 -10.223 6.433 40 D_C20:G1_D D 20 ? D 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 B C 20 1_555 A C 2 1_555 B G 19 1_555 -0.206 -1.849 3.216 2.551 3.522 33.447 -3.733 0.749 2.988 6.088 -4.410 33.721 1 AA_G1C2:G39C40_BB A 1 ? B 40 ? A 2 ? B 39 ? 1 A C 2 1_555 B G 19 1_555 A U 3 1_555 B U 18 1_555 -1.141 -1.868 3.635 2.199 13.792 40.229 -3.998 1.800 2.812 19.360 -3.087 42.490 2 AA_C2U3:U38G39_BB A 2 ? B 39 ? A 3 ? B 38 ? 1 A U 3 1_555 B U 18 1_555 A G 4 1_555 B C 17 1_555 1.689 -2.089 3.025 2.400 8.801 23.351 -7.001 -3.299 2.258 20.757 -5.660 25.047 3 AA_U3G4:C37U38_BB A 3 ? B 38 ? A 4 ? B 37 ? 1 A G 4 1_555 B C 17 1_555 A C 5 1_555 B G 16 1_555 -0.010 -2.107 3.272 0.277 0.620 29.801 -4.224 0.077 3.228 1.206 -0.538 29.809 4 AA_G4C5:G36C37_BB A 4 ? B 37 ? A 5 ? B 36 ? 1 A C 5 1_555 B G 16 1_555 A U 6 1_555 B U 15 1_555 -1.601 -2.088 3.028 -1.029 8.699 21.793 -7.535 3.652 2.119 21.903 2.590 23.468 5 AA_C5U6:U35G36_BB A 5 ? B 36 ? A 6 ? B 35 ? 1 A U 6 1_555 B U 15 1_555 A G 7 1_555 B C 14 1_555 1.377 -1.838 3.559 -4.484 12.066 40.557 -3.752 -2.352 2.766 16.900 6.281 42.469 6 AA_U6G7:C34U35_BB A 6 ? B 35 ? A 7 ? B 34 ? 1 A G 7 1_555 B C 14 1_555 A C 8 1_555 B G 13 1_555 -0.313 -1.955 3.265 1.338 9.966 33.223 -4.677 0.712 2.575 16.952 -2.276 34.671 7 AA_G7C8:G33C34_BB A 7 ? B 34 ? A 8 ? B 33 ? 1 A C 8 1_555 B G 13 1_555 A U 9 1_555 B U 12 1_555 -0.902 -1.699 3.547 2.849 6.214 43.313 -2.892 1.491 3.223 8.357 -3.831 43.824 8 AA_C8U9:U32G33_BB A 8 ? B 33 ? A 9 ? B 32 ? 1 A U 9 1_555 B U 12 1_555 A G 10 1_555 B C 11 1_555 1.127 -2.373 3.032 2.657 8.801 20.417 -8.742 -2.111 1.979 23.359 -7.052 22.372 9 AA_U9G10:C31U32_BB A 9 ? B 32 ? A 10 ? B 31 ? 1 A G 10 1_555 B C 11 1_555 A C 11 1_555 B G 10 1_555 0.209 -1.586 3.124 0.209 4.051 32.185 -3.498 -0.339 2.909 7.271 -0.375 32.433 10 AA_G10C11:G30C31_BB A 10 ? B 31 ? A 11 ? B 30 ? 1 A C 11 1_555 B G 10 1_555 A U 12 1_555 B U 9 1_555 -1.451 -1.947 3.144 -0.123 11.809 22.267 -7.305 3.300 1.891 28.174 0.293 25.170 11 AA_C11U12:U29G30_BB A 11 ? B 30 ? A 12 ? B 29 ? 1 A U 12 1_555 B U 9 1_555 A G 13 1_555 B C 8 1_555 1.034 -1.867 3.521 -6.945 11.609 40.891 -3.675 -2.085 2.715 16.094 9.629 42.979 12 AA_U12G13:C28U29_BB A 12 ? B 29 ? A 13 ? B 28 ? 1 A G 13 1_555 B C 8 1_555 A C 14 1_555 B G 7 1_555 -0.045 -1.808 3.375 1.998 8.383 35.090 -4.067 0.346 2.874 13.650 -3.254 36.100 13 AA_G13C14:G27C28_BB A 13 ? B 28 ? A 14 ? B 27 ? 1 A C 14 1_555 B G 7 1_555 A U 15 1_555 B U 6 1_555 -0.605 -2.049 3.213 6.059 5.408 39.319 -3.560 1.524 2.798 7.934 -8.889 40.117 14 AA_C14U15:U26G27_BB A 14 ? B 27 ? A 15 ? B 26 ? 1 A U 15 1_555 B U 6 1_555 A G 16 1_555 B C 5 1_555 1.039 -2.503 3.197 0.579 7.251 18.507 -10.128 -2.780 2.104 21.499 -1.718 19.874 15 AA_U15G16:C25U26_BB A 15 ? B 26 ? A 16 ? B 25 ? 1 A G 16 1_555 B C 5 1_555 A C 17 1_555 B G 4 1_555 0.188 -1.497 3.260 -0.523 6.477 36.162 -3.224 -0.366 2.954 10.332 0.834 36.722 16 AA_G16C17:G24C25_BB A 16 ? B 25 ? A 17 ? B 24 ? 1 A C 17 1_555 B G 4 1_555 A U 18 1_555 B U 3 1_555 -0.297 -1.463 3.044 -4.763 10.917 22.472 -5.976 -0.480 2.133 25.814 11.262 25.397 17 AA_C17U18:U23G24_BB A 17 ? B 24 ? A 18 ? B 23 ? 1 A U 18 1_555 B U 3 1_555 A G 19 1_555 B C 2 1_555 0.366 -1.630 3.336 2.249 10.938 32.733 -4.349 -0.286 2.688 18.742 -3.853 34.536 18 AA_U18G19:C22U23_BB A 18 ? B 23 ? A 19 ? B 22 ? 1 A G 19 1_555 B C 2 1_555 A C 20 1_555 B G 1 1_555 0.326 -1.968 3.250 0.788 -0.385 31.676 -3.533 -0.453 3.280 -0.706 -1.443 31.688 19 AA_G19C20:G21C22_BB A 19 ? B 22 ? A 20 ? B 21 ? 1 C G 1 1_555 C C 20 4_556 C C 2 1_555 C G 19 4_556 -0.283 -1.535 3.054 -2.883 3.661 39.027 -2.682 0.107 2.917 5.456 4.297 39.293 20 DD_G1C2:G19C20_DD D 1 ? D 20 ? D 2 ? D 19 ? 1 C C 2 1_555 C G 19 4_556 C U 3 1_555 C U 18 4_556 -1.276 -1.535 3.099 1.756 5.326 32.780 -3.486 2.495 2.752 9.351 -3.083 33.244 21 DD_C2U3:U18G19_DD D 2 ? D 19 ? D 3 ? D 18 ? 1 C U 3 1_555 C U 18 4_556 C G 4 1_555 C C 17 4_556 0.506 -1.651 3.276 1.037 8.542 29.041 -4.777 -0.773 2.708 16.580 -2.012 30.262 22 DD_U3G4:C17U18_DD D 3 ? D 18 ? D 4 ? D 17 ? 1 C G 4 1_555 C C 17 4_556 C C 5 1_555 C G 16 4_556 0.012 -1.619 3.185 0.317 3.297 34.439 -3.205 0.027 3.022 5.553 -0.534 34.593 23 DD_G4C5:G16C17_DD D 4 ? D 17 ? D 5 ? D 16 ? 1 C C 5 1_555 C G 16 4_556 C U 6 1_555 C U 15 4_556 -1.519 -1.981 3.189 -1.786 13.675 20.783 -7.947 3.086 1.700 33.555 4.382 24.900 24 DD_C5U6:U15G16_DD D 5 ? D 16 ? D 6 ? D 15 ? 1 C U 6 1_555 C U 15 4_556 C G 7 1_555 C C 14 4_556 1.191 -1.879 3.323 -4.279 8.845 40.048 -3.568 -2.128 2.729 12.685 6.138 41.188 25 DD_U6G7:C14U15_DD D 6 ? D 15 ? D 7 ? D 14 ? 1 C G 7 1_555 C C 14 4_556 C C 8 1_555 C G 13 4_556 0.237 -1.563 3.239 3.133 10.068 37.824 -3.454 -0.003 2.760 15.174 -4.722 39.214 26 DD_G7C8:G13C14_DD D 7 ? D 14 ? D 8 ? D 13 ? 1 C C 8 1_555 C G 13 4_556 C U 9 1_555 C U 12 4_556 -0.924 -1.773 3.448 0.711 11.960 35.138 -4.341 1.546 2.703 19.136 -1.137 37.064 27 DD_C8U9:U12G13_DD D 8 ? D 13 ? D 9 ? D 12 ? 1 C U 9 1_555 C U 12 4_556 C G 10 1_555 C C 11 4_556 1.408 -2.245 3.184 2.017 8.392 25.032 -6.868 -2.604 2.420 18.668 -4.487 26.455 28 DD_U9G10:C11U12_DD D 9 ? D 12 ? D 10 ? D 11 ? 1 C G 10 1_555 C C 11 4_556 C C 11 1_555 C G 10 4_556 0.000 -2.032 2.999 0.000 2.722 31.553 -4.171 0.000 2.818 4.993 0.000 31.667 29 DD_G10C11:G10C11_DD D 10 ? D 11 ? D 11 ? D 10 ? 1 C C 11 1_555 C G 10 4_556 C U 12 1_555 C U 9 4_556 -1.408 -2.245 3.184 -2.017 8.392 25.032 -6.868 2.604 2.420 18.669 4.487 26.455 30 DD_C11U12:U9G10_DD D 11 ? D 10 ? D 12 ? D 9 ? 1 C U 12 1_555 C U 9 4_556 C G 13 1_555 C C 8 4_556 0.924 -1.773 3.448 -0.711 11.960 35.138 -4.341 -1.546 2.703 19.136 1.137 37.064 31 DD_U12G13:C8U9_DD D 12 ? D 9 ? D 13 ? D 8 ? 1 C G 13 1_555 C C 8 4_556 C C 14 1_555 C G 7 4_556 -0.237 -1.563 3.239 -3.133 10.068 37.824 -3.454 0.003 2.760 15.174 4.722 39.214 32 DD_G13C14:G7C8_DD D 13 ? D 8 ? D 14 ? D 7 ? 1 C C 14 1_555 C G 7 4_556 C U 15 1_555 C U 6 4_556 -1.191 -1.879 3.323 4.279 8.845 40.048 -3.568 2.128 2.729 12.685 -6.137 41.188 33 DD_C14U15:U6G7_DD D 14 ? D 7 ? D 15 ? D 6 ? 1 C U 15 1_555 C U 6 4_556 C G 16 1_555 C C 5 4_556 1.519 -1.981 3.189 1.786 13.675 20.783 -7.947 -3.086 1.700 33.555 -4.383 24.900 34 DD_U15G16:C5U6_DD D 15 ? D 6 ? D 16 ? D 5 ? 1 C G 16 1_555 C C 5 4_556 C C 17 1_555 C G 4 4_556 -0.012 -1.619 3.185 -0.317 3.297 34.439 -3.205 -0.027 3.022 5.553 0.534 34.593 35 DD_G16C17:G4C5_DD D 16 ? D 5 ? D 17 ? D 4 ? 1 C C 17 1_555 C G 4 4_556 C U 18 1_555 C U 3 4_556 -0.506 -1.651 3.276 -1.037 8.542 29.041 -4.777 0.773 2.708 16.580 2.012 30.262 36 DD_C17U18:U3G4_DD D 17 ? D 4 ? D 18 ? D 3 ? 1 C U 18 1_555 C U 3 4_556 C G 19 1_555 C C 2 4_556 1.276 -1.535 3.099 -1.756 5.326 32.780 -3.486 -2.495 2.752 9.351 3.083 33.244 37 DD_U18G19:C2U3_DD D 18 ? D 3 ? D 19 ? D 2 ? 1 C G 19 1_555 C C 2 4_556 C C 20 1_555 C G 1 4_556 0.283 -1.535 3.054 2.883 3.661 39.027 -2.682 -0.107 2.917 5.456 -4.297 39.293 38 DD_G19C20:G1C2_DD D 19 ? D 2 ? D 20 ? D 1 ? # _atom_sites.entry_id 4E48 _atom_sites.fract_transf_matrix[1][1] 0.022914 _atom_sites.fract_transf_matrix[1][2] 0.013229 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026458 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006307 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C K N O P S # loop_