HEADER PROTEIN BINDING 15-MAR-12 4E6N TITLE CRYSTAL STRUCTURE OF BACTERIAL PNKP-C/HEN1-N HETERODIMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: METALLOPHOSPHOESTERASE; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: METHYLTRANSFERASE TYPE 12; COMPND 7 CHAIN: B, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM THERMOCELLUM; SOURCE 3 ORGANISM_TAXID: 203119; SOURCE 4 STRAIN: ATCC 27405 / DSM 1237; SOURCE 5 GENE: CTHE_2768; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: CLOSTRIDIUM THERMOCELLUM; SOURCE 10 ORGANISM_TAXID: 203119; SOURCE 11 STRAIN: ATCC 27405 / DSM 1237; SOURCE 12 GENE: CTHE_2767; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RNA REPAIR, RNA LIGASE, LIGASE-ACTIVATING, PROTEIN BINDING, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.H.HUANG,P.WANG REVDAT 4 28-FEB-24 4E6N 1 REMARK SEQADV LINK REVDAT 3 29-AUG-12 4E6N 1 JRNL REVDAT 2 15-AUG-12 4E6N 1 JRNL REVDAT 1 01-AUG-12 4E6N 0 JRNL AUTH P.WANG,C.M.CHAN,D.CHRISTENSEN,C.ZHANG,K.SELVADURAI,R.H.HUANG JRNL TITL MOLECULAR BASIS OF BACTERIAL PROTEIN HEN1 ACTIVATING THE JRNL TITL 2 LIGASE ACTIVITY OF BACTERIAL PROTEIN PNKP FOR RNA REPAIR. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 13248 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 22847431 JRNL DOI 10.1073/PNAS.1209805109 REMARK 2 REMARK 2 RESOLUTION. 2.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.6 REMARK 3 NUMBER OF REFLECTIONS : 49224 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1997 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.6485 - 5.7431 0.98 3711 158 0.1572 0.1899 REMARK 3 2 5.7431 - 4.5618 0.99 3715 158 0.1401 0.1788 REMARK 3 3 4.5618 - 3.9861 0.97 3636 156 0.1438 0.1789 REMARK 3 4 3.9861 - 3.6221 0.49 1282 52 0.1664 0.2217 REMARK 3 5 3.6221 - 3.3627 0.68 2446 97 0.1823 0.2356 REMARK 3 6 3.3627 - 3.1646 0.99 3714 158 0.1905 0.2517 REMARK 3 7 3.1646 - 3.0062 0.99 3704 156 0.1761 0.2516 REMARK 3 8 3.0062 - 2.8754 0.98 3722 166 0.1877 0.2471 REMARK 3 9 2.8754 - 2.7647 0.98 3707 156 0.1784 0.2380 REMARK 3 10 2.7647 - 2.6694 0.97 3660 147 0.1800 0.2832 REMARK 3 11 2.6694 - 2.5859 0.97 3642 151 0.1897 0.2528 REMARK 3 12 2.5859 - 2.5120 0.96 3652 152 0.1865 0.2893 REMARK 3 13 2.5120 - 2.4459 0.96 3573 159 0.1793 0.2529 REMARK 3 14 2.4459 - 2.3900 0.83 3083 131 0.1905 0.2744 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.98 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 41.02 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -8.07400 REMARK 3 B22 (A**2) : -3.14980 REMARK 3 B33 (A**2) : 11.22380 REMARK 3 B12 (A**2) : -4.38080 REMARK 3 B13 (A**2) : 3.11620 REMARK 3 B23 (A**2) : -5.77850 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 10328 REMARK 3 ANGLE : 1.082 13954 REMARK 3 CHIRALITY : 0.074 1522 REMARK 3 PLANARITY : 0.004 1774 REMARK 3 DIHEDRAL : 14.399 3890 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 453:648 OR RESSEQ REMARK 3 660:870 ) REMARK 3 SELECTION : CHAIN C AND (RESSEQ 453:648 OR RESSEQ REMARK 3 660:870 ) REMARK 3 ATOM PAIRS NUMBER : 3268 REMARK 3 RMSD : 0.028 REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN B AND (RESSEQ 1:64 OR RESSEQ 73:226 REMARK 3 ) REMARK 3 SELECTION : CHAIN D AND (RESSEQ 1:64 OR RESSEQ 73:226 REMARK 3 ) REMARK 3 ATOM PAIRS NUMBER : 1759 REMARK 3 RMSD : 0.025 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4E6N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1000071235. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 7.75 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49244 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.390 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 6% PEG6000, 0.5M NACL, 25MM CACL2, 5% REMARK 280 METHANOL, 50MM HEPES, 50 MM TRIS-HCL, PH 7.75, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 303K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 444 REMARK 465 ILE A 445 REMARK 465 LEU A 446 REMARK 465 ASP A 447 REMARK 465 ILE A 448 REMARK 465 ASN A 449 REMARK 465 ASP A 450 REMARK 465 VAL A 451 REMARK 465 LEU A 452 REMARK 465 THR A 649 REMARK 465 VAL A 650 REMARK 465 SER A 651 REMARK 465 PHE A 652 REMARK 465 ASP A 653 REMARK 465 VAL A 654 REMARK 465 SER A 655 REMARK 465 ARG A 656 REMARK 465 GLN A 657 REMARK 465 THR A 658 REMARK 465 SER A 659 REMARK 465 LYS B 65 REMARK 465 LYS B 66 REMARK 465 GLY B 67 REMARK 465 SER B 68 REMARK 465 SER B 69 REMARK 465 GLY B 70 REMARK 465 GLU B 71 REMARK 465 GLY B 72 REMARK 465 LEU B 227 REMARK 465 ILE B 228 REMARK 465 ARG B 229 REMARK 465 LYS B 230 REMARK 465 MET C 444 REMARK 465 ILE C 445 REMARK 465 LEU C 446 REMARK 465 ASP C 447 REMARK 465 ILE C 448 REMARK 465 ASN C 449 REMARK 465 ASP C 450 REMARK 465 VAL C 451 REMARK 465 LEU C 452 REMARK 465 THR C 649 REMARK 465 VAL C 650 REMARK 465 SER C 651 REMARK 465 PHE C 652 REMARK 465 ASP C 653 REMARK 465 VAL C 654 REMARK 465 SER C 655 REMARK 465 ARG C 656 REMARK 465 GLN C 657 REMARK 465 THR C 658 REMARK 465 SER C 659 REMARK 465 LYS D 65 REMARK 465 LYS D 66 REMARK 465 GLY D 67 REMARK 465 SER D 68 REMARK 465 SER D 69 REMARK 465 GLY D 70 REMARK 465 GLU D 71 REMARK 465 GLY D 72 REMARK 465 LEU D 227 REMARK 465 ILE D 228 REMARK 465 ARG D 229 REMARK 465 LYS D 230 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS C 531 P AMP C 902 1.52 REMARK 500 NZ LYS A 531 P AMP A 902 1.53 REMARK 500 O GLU A 814 O HOH A 1117 2.10 REMARK 500 O HOH C 1112 O HOH C 1130 2.11 REMARK 500 NZ LYS A 531 O1P AMP A 902 2.13 REMARK 500 O GLY D 209 N GLY D 211 2.17 REMARK 500 O GLY B 209 N GLY B 211 2.18 REMARK 500 OD1 ASP A 734 O HOH A 1091 2.18 REMARK 500 O HOH C 1115 O HOH C 1131 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 491 141.99 -171.06 REMARK 500 LYS A 504 133.71 -39.96 REMARK 500 GLN A 622 -63.77 -123.38 REMARK 500 ASP A 734 99.72 -166.17 REMARK 500 ALA A 790 138.49 -170.74 REMARK 500 ALA B 43 84.76 -156.07 REMARK 500 CYS B 105 88.60 -161.06 REMARK 500 VAL B 197 -53.80 -144.99 REMARK 500 GLU B 199 -63.05 71.76 REMARK 500 LEU B 205 33.47 -95.01 REMARK 500 GLU B 210 32.21 -30.20 REMARK 500 TYR C 491 140.47 -171.88 REMARK 500 GLN C 622 -65.06 -122.40 REMARK 500 ASP C 734 99.99 -166.13 REMARK 500 ALA C 790 137.80 -172.01 REMARK 500 ALA D 43 86.47 -154.21 REMARK 500 CYS D 105 88.71 -159.34 REMARK 500 VAL D 197 -53.64 -145.46 REMARK 500 GLU D 199 -63.10 71.96 REMARK 500 LEU D 205 34.03 -95.27 REMARK 500 GLU D 210 33.54 -29.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 AMP A 902 REMARK 610 AMP C 902 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 901 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 AMP A 902 O2P REMARK 620 2 HOH A1058 O 85.1 REMARK 620 3 HOH A1059 O 84.3 90.0 REMARK 620 4 HOH A1060 O 176.5 97.5 93.4 REMARK 620 5 HOH A1061 O 78.3 80.5 160.7 104.4 REMARK 620 6 HOH A1100 O 78.5 156.9 104.3 99.6 80.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 901 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 AMP C 902 O2P REMARK 620 2 HOH C1063 O 89.2 REMARK 620 3 HOH C1064 O 87.6 90.2 REMARK 620 4 HOH C1065 O 172.4 97.9 89.5 REMARK 620 5 HOH C1066 O 84.3 84.1 170.2 99.1 REMARK 620 6 HOH C1109 O 81.1 169.9 86.4 91.7 97.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP C 902 DBREF 4E6N A 445 870 UNP A3DJ38 A3DJ38_CLOTH 445 870 DBREF 4E6N B 1 230 UNP A3DJ37 A3DJ37_CLOTH 1 230 DBREF 4E6N C 445 870 UNP A3DJ38 A3DJ38_CLOTH 445 870 DBREF 4E6N D 1 230 UNP A3DJ37 A3DJ37_CLOTH 1 230 SEQADV 4E6N MET A 444 UNP A3DJ38 INITIATING METHIONINE SEQADV 4E6N MET C 444 UNP A3DJ38 INITIATING METHIONINE SEQRES 1 A 427 MET ILE LEU ASP ILE ASN ASP VAL LEU GLY LYS LYS ILE SEQRES 2 A 427 ILE THR THR ARG LEU MET SER SER ILE THR ILE HIS GLU SEQRES 3 A 427 GLU ASN SER ILE ALA ALA LEU GLU VAL MET SER ARG PHE SEQRES 4 A 427 ALA ALA ASP PRO HIS TRP LEU ILE TYR LEU PRO PRO THR SEQRES 5 A 427 MET SER PRO CYS GLU THR SER LYS LYS GLU GLY MET LEU SEQRES 6 A 427 GLU HIS PRO ILE GLU ALA PHE GLU TYR PHE ARG THR ARG SEQRES 7 A 427 GLY VAL GLY LYS VAL VAL CYS GLU GLN LYS HIS MET GLY SEQRES 8 A 427 SER ARG ALA VAL VAL ILE VAL CYS LYS ASP SER GLN VAL SEQRES 9 A 427 ALA GLU LYS ARG PHE GLY VAL LEU ASP GLY THR ALA GLY SEQRES 10 A 427 ILE CYS TYR THR ARG THR GLY ARG HIS PHE PHE ASP ASP SEQRES 11 A 427 MET GLN LEU GLU ALA GLU LEU ILE ASP ARG VAL ARG LYS SEQRES 12 A 427 VAL LEU ASP LYS SER GLY PHE TRP GLY ASP PHE ASN THR SEQRES 13 A 427 ASP TRP VAL CYS LEU ASP CYS GLU LEU MET PRO TRP SER SEQRES 14 A 427 ALA LYS ALA GLN LYS LEU LEU GLU GLU GLN TYR SER ALA SEQRES 15 A 427 VAL GLY ILE SER GLY ARG VAL VAL LEU ASP GLU ALA VAL SEQRES 16 A 427 LYS LEU LEU LYS GLN ALA SER LEU ASN LYS THR VAL SER SEQRES 17 A 427 PHE ASP VAL SER ARG GLN THR SER GLY LYS ASN ALA ASP SEQRES 18 A 427 ILE ASN GLU LEU LEU GLN ARG PHE THR GLU ARG SER GLU SEQRES 19 A 427 MET MET GLN LYS TYR VAL GLU ALA TYR ARG LYS TYR CYS SEQRES 20 A 427 TRP PRO VAL ASN SER ILE ASP ASP LEU LYS LEU ALA PRO SEQRES 21 A 427 PHE HIS ILE LEU ALA THR GLU GLY LYS VAL HIS SER ASP SEQRES 22 A 427 LYS ASN HIS ILE TRP HIS MET ASP THR ILE ALA LYS TYR SEQRES 23 A 427 CYS THR GLN ASP ASP SER LEU ILE MET ALA THR ASN HIS SEQRES 24 A 427 ILE LEU VAL ASP VAL THR ASP ALA GLU SER VAL ASP LYS SEQRES 25 A 427 GLY ILE LYS TRP TRP GLU ASP LEU THR ALA SER GLY GLY SEQRES 26 A 427 GLU GLY MET VAL VAL LYS PRO TYR ASP PHE ILE VAL LYS SEQRES 27 A 427 ASN GLY ARG GLU LEU LEU GLN PRO ALA VAL LYS CYS ARG SEQRES 28 A 427 GLY ARG GLU TYR LEU ARG ILE ILE TYR GLY PRO GLU TYR SEQRES 29 A 427 THR MET ASP GLU ASN ILE GLU ARG LEU ARG ASN ARG ALA SEQRES 30 A 427 VAL GLY LYS LYS ARG SER LEU ALA LEU ARG GLU PHE SER SEQRES 31 A 427 LEU GLY MET GLU ALA LEU GLU ARG PHE VAL ARG ASN GLU SEQRES 32 A 427 PRO LEU TYR ARG VAL HIS GLU CYS VAL PHE GLY VAL LEU SEQRES 33 A 427 ALA LEU GLU SER GLU PRO VAL ASP PRO ARG LEU SEQRES 1 B 230 MET ILE LEU THR ILE THR TYR THR GLN PRO PRO ALA THR SEQRES 2 B 230 ASP LEU GLY TYR LEU LEU HIS LYS ASN PRO SER ARG PRO SEQRES 3 B 230 GLN THR PHE GLU LEU ASN HIS GLY LYS ALA HIS ILE PHE SEQRES 4 B 230 TYR PRO GLU ALA THR SER GLU ARG CYS THR VAL ALA LEU SEQRES 5 B 230 LEU LEU ASP ILE ASP PRO ILE ASP LEU ALA ARG GLY LYS SEQRES 6 B 230 LYS GLY SER SER GLY GLU GLY GLY LEU PHE ASP TYR VAL SEQRES 7 B 230 ASN ASP ARG PRO TYR VAL SER SER SER PHE MET SER VAL SEQRES 8 B 230 ALA ILE SER ARG VAL PHE GLY THR ALA MET SER GLY LYS SEQRES 9 B 230 CYS LYS GLU LYS PRO GLU LEU ALA ALA ILE LYS LEU PRO SEQRES 10 B 230 LEU LYS ALA LYS ILE MET MET LEU PRO CYS LYS GLY GLY SEQRES 11 B 230 GLU GLU ILE ILE TYR ARG LEU PHE GLU PRO LEU GLY TYR SEQRES 12 B 230 LYS VAL ASP VAL GLU GLY TYR MET LEU ASP GLU LYS PHE SEQRES 13 B 230 PRO GLU TRP GLY LYS SER ARG TYR TYR THR VAL SER LEU SEQRES 14 B 230 GLU GLY GLU VAL ARG VAL ARG ASP LEU LEU ASN HIS ILE SEQRES 15 B 230 TYR VAL LEU ILE PRO VAL LEU ASP SER GLU LYS HIS TYR SEQRES 16 B 230 TRP VAL GLY GLU ASP GLU ILE ASP LYS LEU PHE GLN HIS SEQRES 17 B 230 GLY GLU GLY TRP LEU VAL ASP HIS PRO GLU LYS GLU LEU SEQRES 18 B 230 ILE THR GLY ARG TYR LEU ILE ARG LYS SEQRES 1 C 427 MET ILE LEU ASP ILE ASN ASP VAL LEU GLY LYS LYS ILE SEQRES 2 C 427 ILE THR THR ARG LEU MET SER SER ILE THR ILE HIS GLU SEQRES 3 C 427 GLU ASN SER ILE ALA ALA LEU GLU VAL MET SER ARG PHE SEQRES 4 C 427 ALA ALA ASP PRO HIS TRP LEU ILE TYR LEU PRO PRO THR SEQRES 5 C 427 MET SER PRO CYS GLU THR SER LYS LYS GLU GLY MET LEU SEQRES 6 C 427 GLU HIS PRO ILE GLU ALA PHE GLU TYR PHE ARG THR ARG SEQRES 7 C 427 GLY VAL GLY LYS VAL VAL CYS GLU GLN LYS HIS MET GLY SEQRES 8 C 427 SER ARG ALA VAL VAL ILE VAL CYS LYS ASP SER GLN VAL SEQRES 9 C 427 ALA GLU LYS ARG PHE GLY VAL LEU ASP GLY THR ALA GLY SEQRES 10 C 427 ILE CYS TYR THR ARG THR GLY ARG HIS PHE PHE ASP ASP SEQRES 11 C 427 MET GLN LEU GLU ALA GLU LEU ILE ASP ARG VAL ARG LYS SEQRES 12 C 427 VAL LEU ASP LYS SER GLY PHE TRP GLY ASP PHE ASN THR SEQRES 13 C 427 ASP TRP VAL CYS LEU ASP CYS GLU LEU MET PRO TRP SER SEQRES 14 C 427 ALA LYS ALA GLN LYS LEU LEU GLU GLU GLN TYR SER ALA SEQRES 15 C 427 VAL GLY ILE SER GLY ARG VAL VAL LEU ASP GLU ALA VAL SEQRES 16 C 427 LYS LEU LEU LYS GLN ALA SER LEU ASN LYS THR VAL SER SEQRES 17 C 427 PHE ASP VAL SER ARG GLN THR SER GLY LYS ASN ALA ASP SEQRES 18 C 427 ILE ASN GLU LEU LEU GLN ARG PHE THR GLU ARG SER GLU SEQRES 19 C 427 MET MET GLN LYS TYR VAL GLU ALA TYR ARG LYS TYR CYS SEQRES 20 C 427 TRP PRO VAL ASN SER ILE ASP ASP LEU LYS LEU ALA PRO SEQRES 21 C 427 PHE HIS ILE LEU ALA THR GLU GLY LYS VAL HIS SER ASP SEQRES 22 C 427 LYS ASN HIS ILE TRP HIS MET ASP THR ILE ALA LYS TYR SEQRES 23 C 427 CYS THR GLN ASP ASP SER LEU ILE MET ALA THR ASN HIS SEQRES 24 C 427 ILE LEU VAL ASP VAL THR ASP ALA GLU SER VAL ASP LYS SEQRES 25 C 427 GLY ILE LYS TRP TRP GLU ASP LEU THR ALA SER GLY GLY SEQRES 26 C 427 GLU GLY MET VAL VAL LYS PRO TYR ASP PHE ILE VAL LYS SEQRES 27 C 427 ASN GLY ARG GLU LEU LEU GLN PRO ALA VAL LYS CYS ARG SEQRES 28 C 427 GLY ARG GLU TYR LEU ARG ILE ILE TYR GLY PRO GLU TYR SEQRES 29 C 427 THR MET ASP GLU ASN ILE GLU ARG LEU ARG ASN ARG ALA SEQRES 30 C 427 VAL GLY LYS LYS ARG SER LEU ALA LEU ARG GLU PHE SER SEQRES 31 C 427 LEU GLY MET GLU ALA LEU GLU ARG PHE VAL ARG ASN GLU SEQRES 32 C 427 PRO LEU TYR ARG VAL HIS GLU CYS VAL PHE GLY VAL LEU SEQRES 33 C 427 ALA LEU GLU SER GLU PRO VAL ASP PRO ARG LEU SEQRES 1 D 230 MET ILE LEU THR ILE THR TYR THR GLN PRO PRO ALA THR SEQRES 2 D 230 ASP LEU GLY TYR LEU LEU HIS LYS ASN PRO SER ARG PRO SEQRES 3 D 230 GLN THR PHE GLU LEU ASN HIS GLY LYS ALA HIS ILE PHE SEQRES 4 D 230 TYR PRO GLU ALA THR SER GLU ARG CYS THR VAL ALA LEU SEQRES 5 D 230 LEU LEU ASP ILE ASP PRO ILE ASP LEU ALA ARG GLY LYS SEQRES 6 D 230 LYS GLY SER SER GLY GLU GLY GLY LEU PHE ASP TYR VAL SEQRES 7 D 230 ASN ASP ARG PRO TYR VAL SER SER SER PHE MET SER VAL SEQRES 8 D 230 ALA ILE SER ARG VAL PHE GLY THR ALA MET SER GLY LYS SEQRES 9 D 230 CYS LYS GLU LYS PRO GLU LEU ALA ALA ILE LYS LEU PRO SEQRES 10 D 230 LEU LYS ALA LYS ILE MET MET LEU PRO CYS LYS GLY GLY SEQRES 11 D 230 GLU GLU ILE ILE TYR ARG LEU PHE GLU PRO LEU GLY TYR SEQRES 12 D 230 LYS VAL ASP VAL GLU GLY TYR MET LEU ASP GLU LYS PHE SEQRES 13 D 230 PRO GLU TRP GLY LYS SER ARG TYR TYR THR VAL SER LEU SEQRES 14 D 230 GLU GLY GLU VAL ARG VAL ARG ASP LEU LEU ASN HIS ILE SEQRES 15 D 230 TYR VAL LEU ILE PRO VAL LEU ASP SER GLU LYS HIS TYR SEQRES 16 D 230 TRP VAL GLY GLU ASP GLU ILE ASP LYS LEU PHE GLN HIS SEQRES 17 D 230 GLY GLU GLY TRP LEU VAL ASP HIS PRO GLU LYS GLU LEU SEQRES 18 D 230 ILE THR GLY ARG TYR LEU ILE ARG LYS HET MG A 901 1 HET AMP A 902 22 HET MG C 901 1 HET AMP C 902 22 HETNAM MG MAGNESIUM ION HETNAM AMP ADENOSINE MONOPHOSPHATE FORMUL 5 MG 2(MG 2+) FORMUL 6 AMP 2(C10 H14 N5 O7 P) FORMUL 9 HOH *430(H2 O) HELIX 1 1 HIS A 468 PHE A 482 1 15 HELIX 2 2 HIS A 510 THR A 520 1 11 HELIX 3 3 ASP A 544 GLY A 553 1 10 HELIX 4 4 ASP A 573 GLY A 592 1 20 HELIX 5 5 GLY A 592 PHE A 597 1 6 HELIX 6 6 TRP A 611 GLN A 622 1 12 HELIX 7 7 GLN A 622 ASN A 647 1 26 HELIX 8 8 ASP A 664 LYS A 688 1 25 HELIX 9 9 SER A 695 LEU A 699 5 5 HELIX 10 10 ASN A 718 THR A 731 1 14 HELIX 11 11 ASP A 749 SER A 766 1 18 HELIX 12 12 LEU A 799 GLY A 804 1 6 HELIX 13 13 MET A 809 GLU A 814 1 6 HELIX 14 14 VAL A 821 ARG A 844 1 24 HELIX 15 15 PRO A 847 GLU A 862 1 16 HELIX 16 16 THR B 13 LEU B 19 1 7 HELIX 17 17 ASP B 57 GLY B 64 1 8 HELIX 18 18 LEU B 74 VAL B 78 1 5 HELIX 19 19 ASP B 80 VAL B 84 5 5 HELIX 20 20 SER B 86 GLY B 103 1 18 HELIX 21 21 LYS B 108 ILE B 114 1 7 HELIX 22 22 GLY B 130 GLU B 139 1 10 HELIX 23 23 PRO B 140 GLY B 142 5 3 HELIX 24 24 PHE B 156 TRP B 159 5 4 HELIX 25 25 ARG B 174 ASP B 190 1 17 HELIX 26 26 GLU B 192 VAL B 197 1 6 HELIX 27 27 GLU B 199 LEU B 205 1 7 HELIX 28 28 PHE B 206 GLU B 210 5 5 HELIX 29 29 GLY B 211 HIS B 216 1 6 HELIX 30 30 GLU B 218 TYR B 226 1 9 HELIX 31 31 HIS C 468 PHE C 482 1 15 HELIX 32 32 HIS C 510 THR C 520 1 11 HELIX 33 33 ASP C 544 GLY C 553 1 10 HELIX 34 34 ASP C 573 GLY C 592 1 20 HELIX 35 35 GLY C 592 PHE C 597 1 6 HELIX 36 36 TRP C 611 GLN C 622 1 12 HELIX 37 37 GLN C 622 ASN C 647 1 26 HELIX 38 38 ASP C 664 LYS C 688 1 25 HELIX 39 39 SER C 695 LEU C 699 5 5 HELIX 40 40 SER C 715 LYS C 717 5 3 HELIX 41 41 ASN C 718 THR C 731 1 14 HELIX 42 42 ASP C 749 SER C 766 1 18 HELIX 43 43 LEU C 799 GLY C 804 1 6 HELIX 44 44 MET C 809 GLU C 814 1 6 HELIX 45 45 VAL C 821 ARG C 844 1 24 HELIX 46 46 PRO C 847 GLU C 862 1 16 HELIX 47 47 THR D 13 HIS D 20 1 8 HELIX 48 48 ASP D 57 GLY D 64 1 8 HELIX 49 49 LEU D 74 VAL D 78 1 5 HELIX 50 50 ASP D 80 VAL D 84 5 5 HELIX 51 51 SER D 86 GLY D 103 1 18 HELIX 52 52 LYS D 108 ILE D 114 1 7 HELIX 53 53 GLY D 130 GLU D 139 1 10 HELIX 54 54 PRO D 140 GLY D 142 5 3 HELIX 55 55 PHE D 156 TRP D 159 5 4 HELIX 56 56 ARG D 174 ASP D 190 1 17 HELIX 57 57 GLU D 192 VAL D 197 1 6 HELIX 58 58 GLU D 199 LEU D 205 1 7 HELIX 59 59 PHE D 206 GLU D 210 5 5 HELIX 60 60 GLY D 211 HIS D 216 1 6 HELIX 61 61 GLU D 218 TYR D 226 1 9 SHEET 1 A 2 LYS A 455 ILE A 457 0 SHEET 2 A 2 ILE A 465 ILE A 467 -1 O ILE A 467 N LYS A 455 SHEET 1 B 5 SER A 497 PRO A 498 0 SHEET 2 B 5 VAL A 791 ARG A 794 1 O LYS A 792 N SER A 497 SHEET 3 B 5 GLY A 770 PRO A 775 -1 N VAL A 773 O VAL A 791 SHEET 4 B 5 LYS A 525 GLN A 530 -1 N VAL A 527 O LYS A 774 SHEET 5 B 5 HIS A 742 ASP A 746 -1 O ILE A 743 N CYS A 528 SHEET 1 C 5 GLY A 560 TYR A 563 0 SHEET 2 C 5 SER A 535 CYS A 542 -1 N VAL A 538 O TYR A 563 SHEET 3 C 5 TRP A 601 MET A 609 -1 O LEU A 604 N VAL A 539 SHEET 4 C 5 LYS A 700 THR A 709 -1 O LYS A 700 N MET A 609 SHEET 5 C 5 LYS A 712 VAL A 713 -1 O LYS A 712 N THR A 709 SHEET 1 D 8 LYS A 661 ASN A 662 0 SHEET 2 D 8 GLN B 27 LEU B 31 -1 O THR B 28 N LYS A 661 SHEET 3 D 8 GLY B 34 ALA B 43 -1 O GLY B 34 N LEU B 31 SHEET 4 D 8 CYS B 48 ILE B 56 -1 O LEU B 53 N HIS B 37 SHEET 5 D 8 ILE B 2 TYR B 7 -1 N LEU B 3 O LEU B 52 SHEET 6 D 8 LEU B 116 PRO B 126 -1 O LYS B 119 N THR B 6 SHEET 7 D 8 LYS B 161 VAL B 173 -1 O GLY B 171 N LEU B 118 SHEET 8 D 8 LYS B 144 MET B 151 -1 N ASP B 146 O SER B 168 SHEET 1 E 2 LYS A 781 ASN A 782 0 SHEET 2 E 2 GLU A 785 LEU A 786 -1 O GLU A 785 N ASN A 782 SHEET 1 F 2 LYS C 455 ILE C 457 0 SHEET 2 F 2 ILE C 465 ILE C 467 -1 O ILE C 467 N LYS C 455 SHEET 1 G 5 SER C 497 PRO C 498 0 SHEET 2 G 5 VAL C 791 ARG C 794 1 O LYS C 792 N SER C 497 SHEET 3 G 5 GLY C 770 PRO C 775 -1 N VAL C 773 O VAL C 791 SHEET 4 G 5 LYS C 525 GLN C 530 -1 N VAL C 527 O LYS C 774 SHEET 5 G 5 HIS C 742 ASP C 746 -1 O VAL C 745 N VAL C 526 SHEET 1 H 5 GLY C 560 TYR C 563 0 SHEET 2 H 5 SER C 535 CYS C 542 -1 N VAL C 538 O TYR C 563 SHEET 3 H 5 TRP C 601 MET C 609 -1 O LEU C 604 N VAL C 539 SHEET 4 H 5 LYS C 700 THR C 709 -1 O LYS C 700 N MET C 609 SHEET 5 H 5 LYS C 712 VAL C 713 -1 O LYS C 712 N THR C 709 SHEET 1 I 8 LYS C 661 ASN C 662 0 SHEET 2 I 8 GLN D 27 LEU D 31 -1 O THR D 28 N LYS C 661 SHEET 3 I 8 GLY D 34 ALA D 43 -1 O GLY D 34 N LEU D 31 SHEET 4 I 8 CYS D 48 ILE D 56 -1 O LEU D 53 N HIS D 37 SHEET 5 I 8 ILE D 2 TYR D 7 -1 N LEU D 3 O LEU D 52 SHEET 6 I 8 LEU D 116 PRO D 126 -1 O LYS D 119 N THR D 6 SHEET 7 I 8 LYS D 161 VAL D 173 -1 O GLY D 171 N LEU D 118 SHEET 8 I 8 LYS D 144 MET D 151 -1 N ASP D 146 O SER D 168 SHEET 1 J 2 LYS C 781 ASN C 782 0 SHEET 2 J 2 GLU C 785 LEU C 786 -1 O GLU C 785 N ASN C 782 LINK MG MG A 901 O2P AMP A 902 1555 1555 2.45 LINK MG MG A 901 O HOH A1058 1555 1555 2.75 LINK MG MG A 901 O HOH A1059 1555 1555 2.68 LINK MG MG A 901 O HOH A1060 1555 1555 2.50 LINK MG MG A 901 O HOH A1061 1555 1555 2.75 LINK MG MG A 901 O HOH A1100 1555 1555 2.64 LINK MG MG C 901 O2P AMP C 902 1555 1555 2.47 LINK MG MG C 901 O HOH C1063 1555 1555 2.73 LINK MG MG C 901 O HOH C1064 1555 1555 2.65 LINK MG MG C 901 O HOH C1065 1555 1555 2.53 LINK MG MG C 901 O HOH C1066 1555 1555 2.64 LINK MG MG C 901 O HOH C1109 1555 1555 2.69 CISPEP 1 MET A 609 PRO A 610 0 4.11 CISPEP 2 PRO B 10 PRO B 11 0 -0.58 CISPEP 3 MET C 609 PRO C 610 0 2.15 CISPEP 4 PRO D 10 PRO D 11 0 0.41 SITE 1 AC1 6 AMP A 902 HOH A1058 HOH A1059 HOH A1060 SITE 2 AC1 6 HOH A1061 HOH A1100 SITE 1 AC2 15 GLU A 529 GLN A 530 LYS A 531 HIS A 532 SITE 2 AC2 15 ARG A 536 GLU A 607 PHE A 704 GLU A 769 SITE 3 AC2 15 LYS A 774 LYS A 792 MG A 901 HOH A1058 SITE 4 AC2 15 HOH A1069 HOH A1089 HOH A1101 SITE 1 AC3 6 AMP C 902 HOH C1063 HOH C1064 HOH C1065 SITE 2 AC3 6 HOH C1066 HOH C1109 SITE 1 AC4 14 GLU C 529 GLN C 530 LYS C 531 HIS C 532 SITE 2 AC4 14 ARG C 536 GLU C 607 PHE C 704 GLU C 769 SITE 3 AC4 14 LYS C 774 LYS C 792 MG C 901 HOH C1040 SITE 4 AC4 14 HOH C1064 HOH C1078 CRYST1 59.630 59.695 101.540 81.38 87.82 88.82 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016770 -0.000346 -0.000593 0.00000 SCALE2 0.000000 0.016755 -0.002529 0.00000 SCALE3 0.000000 0.000000 0.009967 0.00000