data_4E71 # _entry.id 4E71 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4E71 pdb_00004e71 10.2210/pdb4e71/pdb RCSB RCSB071249 ? ? WWPDB D_1000071249 ? ? # _pdbx_database_status.entry_id 4E71 _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-03-16 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Guan, X.' 1 'Wang, H.' 2 'Tempel, W.' 3 'Tong, Y.' 4 'Arrowsmith, C.H.' 5 'Edwards, A.M.' 6 'Bountra, C.' 7 'Weigelt, J.' 8 'Park, H.' 9 'Structural Genomics Consortium (SGC)' 10 # _citation.id primary _citation.title 'Crystal structure of the RHO GTPASE binding domain of Plexin B2' _citation.journal_abbrev 'to be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Guan, X.' 1 ? primary 'Wang, H.' 2 ? primary 'Tempel, W.' 3 ? primary 'Tong, Y.' 4 ? primary 'Arrowsmith, C.H.' 5 ? primary 'Edwards, A.M.' 6 ? primary 'Bountra, C.' 7 ? primary 'Weigelt, J.' 8 ? primary 'Park, H.' 9 ? # _cell.entry_id 4E71 _cell.length_a 48.380 _cell.length_b 48.380 _cell.length_c 157.360 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4E71 _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.Int_Tables_number 179 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Plexin-B2 12350.050 1 ? ? 'UNP residues 1452-1562' ? 2 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 3 water nat water 18.015 9 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name MM1 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GLLGDDVEYAPLTVSVIVQDEGVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDL TSQREGRWKRVNTLMHYNVRDGATLILSKVG ; _entity_poly.pdbx_seq_one_letter_code_can ;GLLGDDVEYAPLTVSVIVQDEGVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDL TSQREGRWKRVNTLMHYNVRDGATLILSKVG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 LEU n 1 3 LEU n 1 4 GLY n 1 5 ASP n 1 6 ASP n 1 7 VAL n 1 8 GLU n 1 9 TYR n 1 10 ALA n 1 11 PRO n 1 12 LEU n 1 13 THR n 1 14 VAL n 1 15 SER n 1 16 VAL n 1 17 ILE n 1 18 VAL n 1 19 GLN n 1 20 ASP n 1 21 GLU n 1 22 GLY n 1 23 VAL n 1 24 ASP n 1 25 ALA n 1 26 ILE n 1 27 PRO n 1 28 VAL n 1 29 LYS n 1 30 VAL n 1 31 LEU n 1 32 ASN n 1 33 CYS n 1 34 ASP n 1 35 THR n 1 36 ILE n 1 37 SER n 1 38 GLN n 1 39 VAL n 1 40 LYS n 1 41 GLU n 1 42 LYS n 1 43 ILE n 1 44 ILE n 1 45 ASP n 1 46 GLN n 1 47 VAL n 1 48 TYR n 1 49 ARG n 1 50 GLY n 1 51 GLN n 1 52 PRO n 1 53 CYS n 1 54 SER n 1 55 CYS n 1 56 TRP n 1 57 PRO n 1 58 ARG n 1 59 PRO n 1 60 ASP n 1 61 SER n 1 62 VAL n 1 63 VAL n 1 64 LEU n 1 65 GLU n 1 66 TRP n 1 67 ARG n 1 68 PRO n 1 69 GLY n 1 70 SER n 1 71 THR n 1 72 ALA n 1 73 GLN n 1 74 ILE n 1 75 LEU n 1 76 SER n 1 77 ASP n 1 78 LEU n 1 79 ASP n 1 80 LEU n 1 81 THR n 1 82 SER n 1 83 GLN n 1 84 ARG n 1 85 GLU n 1 86 GLY n 1 87 ARG n 1 88 TRP n 1 89 LYS n 1 90 ARG n 1 91 VAL n 1 92 ASN n 1 93 THR n 1 94 LEU n 1 95 MET n 1 96 HIS n 1 97 TYR n 1 98 ASN n 1 99 VAL n 1 100 ARG n 1 101 ASP n 1 102 GLY n 1 103 ALA n 1 104 THR n 1 105 LEU n 1 106 ILE n 1 107 LEU n 1 108 SER n 1 109 LYS n 1 110 VAL n 1 111 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'PLXNB2, KIAA0315' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21-V2R-pRARE2 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28-MHL _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PLXB2_HUMAN _struct_ref.pdbx_db_accession O15031 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GLLGDDVEYAPLTVSVIVQDEGVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDL TSQREGRWKRVNTLMHYNVRDGATLILSKVG ; _struct_ref.pdbx_align_begin 1452 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4E71 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 111 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O15031 _struct_ref_seq.db_align_beg 1452 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 1562 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1452 _struct_ref_seq.pdbx_auth_seq_align_end 1562 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4E71 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_percent_sol 42.85 _exptl_crystal.density_Matthews 2.15 _exptl_crystal.density_meas ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 9.6 _exptl_crystal_grow.temp 291 _exptl_crystal_grow.pdbx_details '2.5M sodium formate, 0.1M glycine, pH 9.6, vapor diffusion, sitting drop, temperature 291K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2011-12-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97934 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 23-ID-B' _diffrn_source.pdbx_wavelength_list 0.97934 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 23-ID-B # _reflns.entry_id 4E71 _reflns.d_resolution_high 2.260 _reflns.d_resolution_low 50.000 _reflns.number_obs 5712 _reflns.pdbx_Rmerge_I_obs 0.098 _reflns.pdbx_netI_over_sigmaI 8.800 _reflns.pdbx_chi_squared 1.915 _reflns.pdbx_redundancy 19.600 _reflns.percent_possible_obs 99.700 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.260 2.300 ? ? ? 0.999 ? ? 0.960 21.000 ? 274 100.000 1 1 2.300 2.340 ? ? ? 0.808 ? ? 1.011 20.600 ? 265 100.000 2 1 2.340 2.390 ? ? ? 0.811 ? ? 1.013 21.000 ? 277 100.000 3 1 2.390 2.430 ? ? ? 0.784 ? ? 0.988 20.400 ? 277 100.000 4 1 2.430 2.490 ? ? ? 0.655 ? ? 1.041 20.900 ? 267 100.000 5 1 2.490 2.550 ? ? ? 0.549 ? ? 1.082 20.900 ? 283 100.000 6 1 2.550 2.610 ? ? ? 0.396 ? ? 1.114 20.600 ? 272 100.000 7 1 2.610 2.680 ? ? ? 0.332 ? ? 1.153 20.400 ? 282 100.000 8 1 2.680 2.760 ? ? ? 0.275 ? ? 1.176 20.500 ? 259 100.000 9 1 2.760 2.850 ? ? ? 0.243 ? ? 1.224 20.600 ? 292 100.000 10 1 2.850 2.950 ? ? ? 0.171 ? ? 1.384 20.600 ? 267 99.300 11 1 2.950 3.070 ? ? ? 0.148 ? ? 1.554 20.000 ? 289 99.700 12 1 3.070 3.210 ? ? ? 0.130 ? ? 1.757 20.400 ? 281 100.000 13 1 3.210 3.380 ? ? ? 0.108 ? ? 2.288 20.000 ? 285 100.000 14 1 3.380 3.590 ? ? ? 0.097 ? ? 2.788 19.400 ? 285 100.000 15 1 3.590 3.860 ? ? ? 0.089 ? ? 2.969 19.300 ? 290 100.000 16 1 3.860 4.250 ? ? ? 0.072 ? ? 3.538 18.600 ? 297 100.000 17 1 4.250 4.870 ? ? ? 0.065 ? ? 3.813 17.700 ? 307 100.000 18 1 4.870 6.130 ? ? ? 0.070 ? ? 3.833 17.000 ? 314 100.000 19 1 6.130 50.000 ? ? ? 0.064 ? ? 4.294 14.200 ? 349 96.100 20 1 # _refine.entry_id 4E71 _refine.ls_d_res_high 2.2600 _refine.ls_d_res_low 32.7400 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.8800 _refine.ls_number_reflns_obs 5645 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;ANISOTROPY IN RESOLUTION LIMITS OF DIFFRACTION WAS OBSERVED. APPEARANCE OF ELECTRON DENSITY MAPS IS POOR GIVEN THE HIGH RESOLUTION LIMIT OF DIFFRACTION DATA. AVERAGE ATOMIC B-FACTOR SIGNIFICANTLY EXCEEDS VALUE DERIVED FROM WILSON PLOT. DENSITY FOR SOME PROTEIN LOOPS IS NOT INTERPRETABLE IN TERMS OF GOOD PEPTIDE GEOMETRY. UNMERGED REFLECTION INTENSITIES ARE INCLUDED IN ADDITION TO STRUCTURE FACTORS FROM LAST REFINEMENT. ; _refine.ls_R_factor_obs 0.2459 _refine.ls_R_factor_R_work 0.2441 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2853 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.5000 _refine.ls_number_reflns_R_free 254 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 72.5111 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -5.0156 _refine.aniso_B[2][2] -5.0156 _refine.aniso_B[3][3] 10.0312 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9285 _refine.correlation_coeff_Fo_to_Fc_free 0.9208 _refine.overall_SU_R_Cruickshank_DPI 0.2580 _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.solvent_model_details ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB entry 2R2O' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 152.400 _refine.B_iso_min 38.400 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.ls_R_factor_all ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 4E71 _refine_analyze.Luzzati_coordinate_error_obs 0.497 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 650 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 9 _refine_hist.number_atoms_total 660 _refine_hist.d_res_high 2.2600 _refine_hist.d_res_low 32.7400 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id t_dihedral_angle_d 210 ? ? 2.000 SINUSOIDAL 'X-RAY DIFFRACTION' t_trig_c_planes 16 ? ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_gen_planes 92 ? ? 5.000 HARMONIC 'X-RAY DIFFRACTION' t_it 655 ? ? 20.000 HARMONIC 'X-RAY DIFFRACTION' t_nbd 0 ? ? 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_improper_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_pseud_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_chiral_improper_torsion 99 ? ? 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_sum_occupancies ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_distance ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_ideal_dist_contact 721 ? ? 4.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_bond_d 655 0.010 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_angle_deg 896 1.120 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_omega_torsion ? 2.720 ? ? ? 'X-RAY DIFFRACTION' t_other_torsion ? 15.030 ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 2.2600 _refine_ls_shell.d_res_low 2.5300 _refine_ls_shell.pdbx_total_number_of_bins_used 5 _refine_ls_shell.percent_reflns_obs 99.8800 _refine_ls_shell.number_reflns_R_work 1464 _refine_ls_shell.R_factor_all 0.2098 _refine_ls_shell.R_factor_R_work 0.2081 _refine_ls_shell.R_factor_R_free 0.2416 _refine_ls_shell.percent_reflns_R_free 5.0600 _refine_ls_shell.number_reflns_R_free 78 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1542 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4E71 _struct.title 'Crystal structure of the RHO GTPASE binding domain of Plexin B2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4E71 _struct_keywords.text 'plexin, transmembrane, signaling, rbd, Structural Genomics Consortium, SGC, SIGNALING PROTEIN' _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details 'BIOLOGICAL ASSEMBLY IS UNKNOWN AS PER AUTHORS' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 35 ? TYR A 48 ? THR A 1486 TYR A 1499 1 ? 14 HELX_P HELX_P2 2 THR A 93 ? ASN A 98 ? THR A 1544 ASN A 1549 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A CYS 33 O ? ? ? 1_555 B NA . NA ? ? A CYS 1484 A NA 1601 1_555 ? ? ? ? ? ? ? 2.549 ? ? metalc2 metalc ? ? A GLN 38 OE1 ? ? ? 1_555 B NA . NA ? ? A GLN 1489 A NA 1601 1_555 ? ? ? ? ? ? ? 2.545 ? ? metalc3 metalc ? ? B NA . NA ? ? ? 1_555 C HOH . O ? ? A NA 1601 A HOH 1701 1_555 ? ? ? ? ? ? ? 2.409 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 26 ? LEU A 31 ? ILE A 1477 LEU A 1482 A 2 PRO A 11 ? VAL A 18 ? PRO A 1462 VAL A 1469 A 3 THR A 104 ? LYS A 109 ? THR A 1555 LYS A 1560 A 4 VAL A 62 ? TRP A 66 ? VAL A 1513 TRP A 1517 A 5 GLN A 73 ? ILE A 74 ? GLN A 1524 ILE A 1525 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ILE A 26 ? O ILE A 1477 N VAL A 16 ? N VAL A 1467 A 2 3 N ILE A 17 ? N ILE A 1468 O LEU A 107 ? O LEU A 1558 A 3 4 O SER A 108 ? O SER A 1559 N VAL A 63 ? N VAL A 1514 A 4 5 N TRP A 66 ? N TRP A 1517 O GLN A 73 ? O GLN A 1524 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id NA _struct_site.pdbx_auth_seq_id 1601 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'BINDING SITE FOR RESIDUE NA A 1601' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 CYS A 33 ? CYS A 1484 . ? 1_555 ? 2 AC1 6 CYS A 33 ? CYS A 1484 . ? 10_555 ? 3 AC1 6 GLN A 38 ? GLN A 1489 . ? 1_555 ? 4 AC1 6 GLN A 38 ? GLN A 1489 . ? 10_555 ? 5 AC1 6 HOH C . ? HOH A 1701 . ? 1_555 ? 6 AC1 6 HOH C . ? HOH A 1701 . ? 10_555 ? # _atom_sites.entry_id 4E71 _atom_sites.fract_transf_matrix[1][1] 0.020670 _atom_sites.fract_transf_matrix[1][2] 0.011934 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023867 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006355 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N NA O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1452 ? ? ? A . n A 1 2 LEU 2 1453 ? ? ? A . n A 1 3 LEU 3 1454 ? ? ? A . n A 1 4 GLY 4 1455 ? ? ? A . n A 1 5 ASP 5 1456 ? ? ? A . n A 1 6 ASP 6 1457 ? ? ? A . n A 1 7 VAL 7 1458 ? ? ? A . n A 1 8 GLU 8 1459 1459 GLU GLU A . n A 1 9 TYR 9 1460 1460 TYR TYR A . n A 1 10 ALA 10 1461 1461 ALA ALA A . n A 1 11 PRO 11 1462 1462 PRO PRO A . n A 1 12 LEU 12 1463 1463 LEU LEU A . n A 1 13 THR 13 1464 1464 THR THR A . n A 1 14 VAL 14 1465 1465 VAL VAL A . n A 1 15 SER 15 1466 1466 SER SER A . n A 1 16 VAL 16 1467 1467 VAL VAL A . n A 1 17 ILE 17 1468 1468 ILE ILE A . n A 1 18 VAL 18 1469 1469 VAL VAL A . n A 1 19 GLN 19 1470 1470 GLN GLN A . n A 1 20 ASP 20 1471 1471 ASP ASP A . n A 1 21 GLU 21 1472 1472 GLU GLU A . n A 1 22 GLY 22 1473 1473 GLY GLY A . n A 1 23 VAL 23 1474 1474 VAL VAL A . n A 1 24 ASP 24 1475 1475 ASP ASP A . n A 1 25 ALA 25 1476 1476 ALA ALA A . n A 1 26 ILE 26 1477 1477 ILE ILE A . n A 1 27 PRO 27 1478 1478 PRO PRO A . n A 1 28 VAL 28 1479 1479 VAL VAL A . n A 1 29 LYS 29 1480 1480 LYS LYS A . n A 1 30 VAL 30 1481 1481 VAL VAL A . n A 1 31 LEU 31 1482 1482 LEU LEU A . n A 1 32 ASN 32 1483 1483 ASN ASN A . n A 1 33 CYS 33 1484 1484 CYS CYS A . n A 1 34 ASP 34 1485 1485 ASP ASP A . n A 1 35 THR 35 1486 1486 THR THR A . n A 1 36 ILE 36 1487 1487 ILE ILE A . n A 1 37 SER 37 1488 1488 SER SER A . n A 1 38 GLN 38 1489 1489 GLN GLN A . n A 1 39 VAL 39 1490 1490 VAL VAL A . n A 1 40 LYS 40 1491 1491 LYS LYS A . n A 1 41 GLU 41 1492 1492 GLU GLU A . n A 1 42 LYS 42 1493 1493 LYS LYS A . n A 1 43 ILE 43 1494 1494 ILE ILE A . n A 1 44 ILE 44 1495 1495 ILE ILE A . n A 1 45 ASP 45 1496 1496 ASP ASP A . n A 1 46 GLN 46 1497 1497 GLN GLN A . n A 1 47 VAL 47 1498 1498 VAL VAL A . n A 1 48 TYR 48 1499 1499 TYR TYR A . n A 1 49 ARG 49 1500 1500 ARG ARG A . n A 1 50 GLY 50 1501 ? ? ? A . n A 1 51 GLN 51 1502 ? ? ? A . n A 1 52 PRO 52 1503 ? ? ? A . n A 1 53 CYS 53 1504 ? ? ? A . n A 1 54 SER 54 1505 ? ? ? A . n A 1 55 CYS 55 1506 ? ? ? A . n A 1 56 TRP 56 1507 ? ? ? A . n A 1 57 PRO 57 1508 ? ? ? A . n A 1 58 ARG 58 1509 ? ? ? A . n A 1 59 PRO 59 1510 1510 PRO PRO A . n A 1 60 ASP 60 1511 1511 ASP ASP A . n A 1 61 SER 61 1512 1512 SER SER A . n A 1 62 VAL 62 1513 1513 VAL VAL A . n A 1 63 VAL 63 1514 1514 VAL VAL A . n A 1 64 LEU 64 1515 1515 LEU LEU A . n A 1 65 GLU 65 1516 1516 GLU GLU A . n A 1 66 TRP 66 1517 1517 TRP TRP A . n A 1 67 ARG 67 1518 1518 ARG ARG A . n A 1 68 PRO 68 1519 1519 PRO PRO A . n A 1 69 GLY 69 1520 ? ? ? A . n A 1 70 SER 70 1521 1521 SER SER A . n A 1 71 THR 71 1522 1522 THR THR A . n A 1 72 ALA 72 1523 1523 ALA ALA A . n A 1 73 GLN 73 1524 1524 GLN GLN A . n A 1 74 ILE 74 1525 1525 ILE ILE A . n A 1 75 LEU 75 1526 1526 LEU LEU A . n A 1 76 SER 76 1527 1527 SER SER A . n A 1 77 ASP 77 1528 1528 ASP ASP A . n A 1 78 LEU 78 1529 1529 LEU LEU A . n A 1 79 ASP 79 1530 1530 ASP ASP A . n A 1 80 LEU 80 1531 1531 LEU LEU A . n A 1 81 THR 81 1532 1532 THR THR A . n A 1 82 SER 82 1533 1533 SER SER A . n A 1 83 GLN 83 1534 1534 GLN GLN A . n A 1 84 ARG 84 1535 1535 ARG ARG A . n A 1 85 GLU 85 1536 ? ? ? A . n A 1 86 GLY 86 1537 ? ? ? A . n A 1 87 ARG 87 1538 ? ? ? A . n A 1 88 TRP 88 1539 1539 TRP TRP A . n A 1 89 LYS 89 1540 1540 LYS LYS A . n A 1 90 ARG 90 1541 1541 ARG ARG A . n A 1 91 VAL 91 1542 1542 VAL VAL A . n A 1 92 ASN 92 1543 1543 ASN ASN A . n A 1 93 THR 93 1544 1544 THR THR A . n A 1 94 LEU 94 1545 1545 LEU LEU A . n A 1 95 MET 95 1546 1546 MET MET A . n A 1 96 HIS 96 1547 1547 HIS HIS A . n A 1 97 TYR 97 1548 1548 TYR TYR A . n A 1 98 ASN 98 1549 1549 ASN ASN A . n A 1 99 VAL 99 1550 1550 VAL VAL A . n A 1 100 ARG 100 1551 1551 ARG ARG A . n A 1 101 ASP 101 1552 1552 ASP ASP A . n A 1 102 GLY 102 1553 1553 GLY GLY A . n A 1 103 ALA 103 1554 1554 ALA ALA A . n A 1 104 THR 104 1555 1555 THR THR A . n A 1 105 LEU 105 1556 1556 LEU LEU A . n A 1 106 ILE 106 1557 1557 ILE ILE A . n A 1 107 LEU 107 1558 1558 LEU LEU A . n A 1 108 SER 108 1559 1559 SER SER A . n A 1 109 LYS 109 1560 1560 LYS LYS A . n A 1 110 VAL 110 1561 1561 VAL VAL A . n A 1 111 GLY 111 1562 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Structural Genomics Consortium' _pdbx_SG_project.initial_of_center SGC # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA 1 1601 1 NA NA A . C 3 HOH 1 1701 1 HOH HOH A . C 3 HOH 2 1702 2 HOH HOH A . C 3 HOH 3 1703 3 HOH HOH A . C 3 HOH 4 1704 4 HOH HOH A . C 3 HOH 5 1705 5 HOH HOH A . C 3 HOH 6 1706 6 HOH HOH A . C 3 HOH 7 1707 7 HOH HOH A . C 3 HOH 8 1708 8 HOH HOH A . C 3 HOH 9 1709 9 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1230 ? 1 MORE -21 ? 1 'SSA (A^2)' 9960 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 10_555 -y,-x,-z+1/6 0.5000000000 -0.8660254038 0.0000000000 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 26.2266666667 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id NA _pdbx_struct_special_symmetry.auth_seq_id 1601 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id B _pdbx_struct_special_symmetry.label_comp_id NA _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A CYS 33 ? A CYS 1484 ? 1_555 NA ? B NA . ? A NA 1601 ? 1_555 OE1 ? A GLN 38 ? A GLN 1489 ? 1_555 100.0 ? 2 O ? A CYS 33 ? A CYS 1484 ? 1_555 NA ? B NA . ? A NA 1601 ? 1_555 O ? C HOH . ? A HOH 1701 ? 1_555 85.7 ? 3 OE1 ? A GLN 38 ? A GLN 1489 ? 1_555 NA ? B NA . ? A NA 1601 ? 1_555 O ? C HOH . ? A HOH 1701 ? 1_555 88.8 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-03-28 2 'Structure model' 1 1 2017-11-15 3 'Structure model' 1 2 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Refinement description' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' software 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' database_2 5 3 'Structure model' pdbx_initial_refinement_model 6 3 'Structure model' pdbx_struct_conn_angle 7 3 'Structure model' struct_conn 8 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_software.classification' 2 2 'Structure model' '_software.contact_author' 3 2 'Structure model' '_software.contact_author_email' 4 2 'Structure model' '_software.date' 5 2 'Structure model' '_software.language' 6 2 'Structure model' '_software.location' 7 2 'Structure model' '_software.name' 8 2 'Structure model' '_software.type' 9 2 'Structure model' '_software.version' 10 3 'Structure model' '_database_2.pdbx_DOI' 11 3 'Structure model' '_database_2.pdbx_database_accession' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 18 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 19 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 20 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 21 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 22 3 'Structure model' '_pdbx_struct_conn_angle.value' 23 3 'Structure model' '_struct_conn.pdbx_dist_value' 24 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 25 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 26 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 27 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 28 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 29 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 30 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 31 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 32 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 33 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 34 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 35 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 36 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 37 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -16.3709 _pdbx_refine_tls.origin_y 15.5125 _pdbx_refine_tls.origin_z 2.0833 _pdbx_refine_tls.T[1][1] 0.0115 _pdbx_refine_tls.T[2][2] 0.1855 _pdbx_refine_tls.T[3][3] -0.0658 _pdbx_refine_tls.T[1][2] 0.0967 _pdbx_refine_tls.T[1][3] 0.0590 _pdbx_refine_tls.T[2][3] 0.2069 _pdbx_refine_tls.L[1][1] 9.4369 _pdbx_refine_tls.L[2][2] 6.3021 _pdbx_refine_tls.L[3][3] 7.8396 _pdbx_refine_tls.L[1][2] 3.3919 _pdbx_refine_tls.L[1][3] -2.9905 _pdbx_refine_tls.L[2][3] -5.4746 _pdbx_refine_tls.S[1][1] -0.0884 _pdbx_refine_tls.S[2][2] 0.0839 _pdbx_refine_tls.S[3][3] 0.0045 _pdbx_refine_tls.S[1][2] 0.7336 _pdbx_refine_tls.S[1][3] 0.2369 _pdbx_refine_tls.S[2][3] 0.2001 _pdbx_refine_tls.S[2][1] -0.6255 _pdbx_refine_tls.S[3][1] 0.7194 _pdbx_refine_tls.S[3][2] 0.1274 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 1459 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 1561 _pdbx_refine_tls_group.selection_details '{ A|* }' _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 PHASER . ? program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 4 BUSTER-TNT 'BUSTER 2.10.0' ? program 'Gerard Bricogne' buster-develop@GlobalPhasing.com refinement http://www.globalphasing.com/buster/ ? ? 5 PDB_EXTRACT 3.11 'August 3, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 BUSTER 2.10.0 ? ? ? ? refinement ? ? ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 1471 ? ? 58.49 11.41 2 1 ASN A 1549 ? ? 72.48 42.42 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 1459 ? CG ? A GLU 8 CG 2 1 Y 1 A GLU 1459 ? CD ? A GLU 8 CD 3 1 Y 1 A GLU 1459 ? OE1 ? A GLU 8 OE1 4 1 Y 1 A GLU 1459 ? OE2 ? A GLU 8 OE2 5 1 Y 1 A TYR 1460 ? CG ? A TYR 9 CG 6 1 Y 1 A TYR 1460 ? CD1 ? A TYR 9 CD1 7 1 Y 1 A TYR 1460 ? CD2 ? A TYR 9 CD2 8 1 Y 1 A TYR 1460 ? CE1 ? A TYR 9 CE1 9 1 Y 1 A TYR 1460 ? CE2 ? A TYR 9 CE2 10 1 Y 1 A TYR 1460 ? CZ ? A TYR 9 CZ 11 1 Y 1 A TYR 1460 ? OH ? A TYR 9 OH 12 1 Y 1 A ILE 1477 ? CD1 ? A ILE 26 CD1 13 1 Y 1 A LYS 1480 ? CG ? A LYS 29 CG 14 1 Y 1 A LYS 1480 ? CD ? A LYS 29 CD 15 1 Y 1 A LYS 1480 ? CE ? A LYS 29 CE 16 1 Y 1 A LYS 1480 ? NZ ? A LYS 29 NZ 17 1 Y 1 A ASN 1483 ? OD1 ? A ASN 32 OD1 18 1 Y 1 A ASN 1483 ? ND2 ? A ASN 32 ND2 19 1 Y 1 A SER 1512 ? OG ? A SER 61 OG 20 1 Y 1 A ARG 1518 ? CG ? A ARG 67 CG 21 1 Y 1 A ARG 1518 ? CD ? A ARG 67 CD 22 1 Y 1 A ARG 1518 ? NE ? A ARG 67 NE 23 1 Y 1 A ARG 1518 ? CZ ? A ARG 67 CZ 24 1 Y 1 A ARG 1518 ? NH1 ? A ARG 67 NH1 25 1 Y 1 A ARG 1518 ? NH2 ? A ARG 67 NH2 26 1 Y 1 A PRO 1519 ? O ? A PRO 68 O 27 1 Y 1 A SER 1521 ? OG ? A SER 70 OG 28 1 Y 1 A THR 1522 ? OG1 ? A THR 71 OG1 29 1 Y 1 A THR 1522 ? CG2 ? A THR 71 CG2 30 1 Y 1 A GLN 1534 ? CG ? A GLN 83 CG 31 1 Y 1 A GLN 1534 ? CD ? A GLN 83 CD 32 1 Y 1 A GLN 1534 ? OE1 ? A GLN 83 OE1 33 1 Y 1 A GLN 1534 ? NE2 ? A GLN 83 NE2 34 1 Y 1 A ARG 1535 ? CG ? A ARG 84 CG 35 1 Y 1 A ARG 1535 ? CD ? A ARG 84 CD 36 1 Y 1 A ARG 1535 ? NE ? A ARG 84 NE 37 1 Y 1 A ARG 1535 ? CZ ? A ARG 84 CZ 38 1 Y 1 A ARG 1535 ? NH1 ? A ARG 84 NH1 39 1 Y 1 A ARG 1535 ? NH2 ? A ARG 84 NH2 40 1 Y 1 A TRP 1539 ? CG ? A TRP 88 CG 41 1 Y 1 A TRP 1539 ? CD1 ? A TRP 88 CD1 42 1 Y 1 A TRP 1539 ? CD2 ? A TRP 88 CD2 43 1 Y 1 A TRP 1539 ? NE1 ? A TRP 88 NE1 44 1 Y 1 A TRP 1539 ? CE2 ? A TRP 88 CE2 45 1 Y 1 A TRP 1539 ? CE3 ? A TRP 88 CE3 46 1 Y 1 A TRP 1539 ? CZ2 ? A TRP 88 CZ2 47 1 Y 1 A TRP 1539 ? CZ3 ? A TRP 88 CZ3 48 1 Y 1 A TRP 1539 ? CH2 ? A TRP 88 CH2 49 1 Y 1 A LYS 1540 ? CG ? A LYS 89 CG 50 1 Y 1 A LYS 1540 ? CD ? A LYS 89 CD 51 1 Y 1 A LYS 1540 ? CE ? A LYS 89 CE 52 1 Y 1 A LYS 1540 ? NZ ? A LYS 89 NZ 53 1 Y 1 A ASN 1549 ? OD1 ? A ASN 98 OD1 54 1 Y 1 A ASN 1549 ? ND2 ? A ASN 98 ND2 55 1 Y 1 A ARG 1551 ? CG ? A ARG 100 CG 56 1 Y 1 A ARG 1551 ? CD ? A ARG 100 CD 57 1 Y 1 A ARG 1551 ? NE ? A ARG 100 NE 58 1 Y 1 A ARG 1551 ? CZ ? A ARG 100 CZ 59 1 Y 1 A ARG 1551 ? NH1 ? A ARG 100 NH1 60 1 Y 1 A ARG 1551 ? NH2 ? A ARG 100 NH2 61 1 Y 1 A LYS 1560 ? CG ? A LYS 109 CG 62 1 Y 1 A LYS 1560 ? CD ? A LYS 109 CD 63 1 Y 1 A LYS 1560 ? CE ? A LYS 109 CE 64 1 Y 1 A LYS 1560 ? NZ ? A LYS 109 NZ 65 1 Y 1 A VAL 1561 ? CG1 ? A VAL 110 CG1 66 1 Y 1 A VAL 1561 ? CG2 ? A VAL 110 CG2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 1452 ? A GLY 1 2 1 Y 1 A LEU 1453 ? A LEU 2 3 1 Y 1 A LEU 1454 ? A LEU 3 4 1 Y 1 A GLY 1455 ? A GLY 4 5 1 Y 1 A ASP 1456 ? A ASP 5 6 1 Y 1 A ASP 1457 ? A ASP 6 7 1 Y 1 A VAL 1458 ? A VAL 7 8 1 Y 1 A GLY 1501 ? A GLY 50 9 1 Y 1 A GLN 1502 ? A GLN 51 10 1 Y 1 A PRO 1503 ? A PRO 52 11 1 Y 1 A CYS 1504 ? A CYS 53 12 1 Y 1 A SER 1505 ? A SER 54 13 1 Y 1 A CYS 1506 ? A CYS 55 14 1 Y 1 A TRP 1507 ? A TRP 56 15 1 Y 1 A PRO 1508 ? A PRO 57 16 1 Y 1 A ARG 1509 ? A ARG 58 17 1 Y 1 A GLY 1520 ? A GLY 69 18 1 Y 1 A GLU 1536 ? A GLU 85 19 1 Y 1 A GLY 1537 ? A GLY 86 20 1 Y 1 A ARG 1538 ? A ARG 87 21 1 Y 1 A GLY 1562 ? A GLY 111 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 NA NA NA N N 250 PRO N N N N 251 PRO CA C N S 252 PRO C C N N 253 PRO O O N N 254 PRO CB C N N 255 PRO CG C N N 256 PRO CD C N N 257 PRO OXT O N N 258 PRO H H N N 259 PRO HA H N N 260 PRO HB2 H N N 261 PRO HB3 H N N 262 PRO HG2 H N N 263 PRO HG3 H N N 264 PRO HD2 H N N 265 PRO HD3 H N N 266 PRO HXT H N N 267 SER N N N N 268 SER CA C N S 269 SER C C N N 270 SER O O N N 271 SER CB C N N 272 SER OG O N N 273 SER OXT O N N 274 SER H H N N 275 SER H2 H N N 276 SER HA H N N 277 SER HB2 H N N 278 SER HB3 H N N 279 SER HG H N N 280 SER HXT H N N 281 THR N N N N 282 THR CA C N S 283 THR C C N N 284 THR O O N N 285 THR CB C N R 286 THR OG1 O N N 287 THR CG2 C N N 288 THR OXT O N N 289 THR H H N N 290 THR H2 H N N 291 THR HA H N N 292 THR HB H N N 293 THR HG1 H N N 294 THR HG21 H N N 295 THR HG22 H N N 296 THR HG23 H N N 297 THR HXT H N N 298 TRP N N N N 299 TRP CA C N S 300 TRP C C N N 301 TRP O O N N 302 TRP CB C N N 303 TRP CG C Y N 304 TRP CD1 C Y N 305 TRP CD2 C Y N 306 TRP NE1 N Y N 307 TRP CE2 C Y N 308 TRP CE3 C Y N 309 TRP CZ2 C Y N 310 TRP CZ3 C Y N 311 TRP CH2 C Y N 312 TRP OXT O N N 313 TRP H H N N 314 TRP H2 H N N 315 TRP HA H N N 316 TRP HB2 H N N 317 TRP HB3 H N N 318 TRP HD1 H N N 319 TRP HE1 H N N 320 TRP HE3 H N N 321 TRP HZ2 H N N 322 TRP HZ3 H N N 323 TRP HH2 H N N 324 TRP HXT H N N 325 TYR N N N N 326 TYR CA C N S 327 TYR C C N N 328 TYR O O N N 329 TYR CB C N N 330 TYR CG C Y N 331 TYR CD1 C Y N 332 TYR CD2 C Y N 333 TYR CE1 C Y N 334 TYR CE2 C Y N 335 TYR CZ C Y N 336 TYR OH O N N 337 TYR OXT O N N 338 TYR H H N N 339 TYR H2 H N N 340 TYR HA H N N 341 TYR HB2 H N N 342 TYR HB3 H N N 343 TYR HD1 H N N 344 TYR HD2 H N N 345 TYR HE1 H N N 346 TYR HE2 H N N 347 TYR HH H N N 348 TYR HXT H N N 349 VAL N N N N 350 VAL CA C N S 351 VAL C C N N 352 VAL O O N N 353 VAL CB C N N 354 VAL CG1 C N N 355 VAL CG2 C N N 356 VAL OXT O N N 357 VAL H H N N 358 VAL H2 H N N 359 VAL HA H N N 360 VAL HB H N N 361 VAL HG11 H N N 362 VAL HG12 H N N 363 VAL HG13 H N N 364 VAL HG21 H N N 365 VAL HG22 H N N 366 VAL HG23 H N N 367 VAL HXT H N N 368 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PRO N CA sing N N 237 PRO N CD sing N N 238 PRO N H sing N N 239 PRO CA C sing N N 240 PRO CA CB sing N N 241 PRO CA HA sing N N 242 PRO C O doub N N 243 PRO C OXT sing N N 244 PRO CB CG sing N N 245 PRO CB HB2 sing N N 246 PRO CB HB3 sing N N 247 PRO CG CD sing N N 248 PRO CG HG2 sing N N 249 PRO CG HG3 sing N N 250 PRO CD HD2 sing N N 251 PRO CD HD3 sing N N 252 PRO OXT HXT sing N N 253 SER N CA sing N N 254 SER N H sing N N 255 SER N H2 sing N N 256 SER CA C sing N N 257 SER CA CB sing N N 258 SER CA HA sing N N 259 SER C O doub N N 260 SER C OXT sing N N 261 SER CB OG sing N N 262 SER CB HB2 sing N N 263 SER CB HB3 sing N N 264 SER OG HG sing N N 265 SER OXT HXT sing N N 266 THR N CA sing N N 267 THR N H sing N N 268 THR N H2 sing N N 269 THR CA C sing N N 270 THR CA CB sing N N 271 THR CA HA sing N N 272 THR C O doub N N 273 THR C OXT sing N N 274 THR CB OG1 sing N N 275 THR CB CG2 sing N N 276 THR CB HB sing N N 277 THR OG1 HG1 sing N N 278 THR CG2 HG21 sing N N 279 THR CG2 HG22 sing N N 280 THR CG2 HG23 sing N N 281 THR OXT HXT sing N N 282 TRP N CA sing N N 283 TRP N H sing N N 284 TRP N H2 sing N N 285 TRP CA C sing N N 286 TRP CA CB sing N N 287 TRP CA HA sing N N 288 TRP C O doub N N 289 TRP C OXT sing N N 290 TRP CB CG sing N N 291 TRP CB HB2 sing N N 292 TRP CB HB3 sing N N 293 TRP CG CD1 doub Y N 294 TRP CG CD2 sing Y N 295 TRP CD1 NE1 sing Y N 296 TRP CD1 HD1 sing N N 297 TRP CD2 CE2 doub Y N 298 TRP CD2 CE3 sing Y N 299 TRP NE1 CE2 sing Y N 300 TRP NE1 HE1 sing N N 301 TRP CE2 CZ2 sing Y N 302 TRP CE3 CZ3 doub Y N 303 TRP CE3 HE3 sing N N 304 TRP CZ2 CH2 doub Y N 305 TRP CZ2 HZ2 sing N N 306 TRP CZ3 CH2 sing Y N 307 TRP CZ3 HZ3 sing N N 308 TRP CH2 HH2 sing N N 309 TRP OXT HXT sing N N 310 TYR N CA sing N N 311 TYR N H sing N N 312 TYR N H2 sing N N 313 TYR CA C sing N N 314 TYR CA CB sing N N 315 TYR CA HA sing N N 316 TYR C O doub N N 317 TYR C OXT sing N N 318 TYR CB CG sing N N 319 TYR CB HB2 sing N N 320 TYR CB HB3 sing N N 321 TYR CG CD1 doub Y N 322 TYR CG CD2 sing Y N 323 TYR CD1 CE1 sing Y N 324 TYR CD1 HD1 sing N N 325 TYR CD2 CE2 doub Y N 326 TYR CD2 HD2 sing N N 327 TYR CE1 CZ doub Y N 328 TYR CE1 HE1 sing N N 329 TYR CE2 CZ sing Y N 330 TYR CE2 HE2 sing N N 331 TYR CZ OH sing N N 332 TYR OH HH sing N N 333 TYR OXT HXT sing N N 334 VAL N CA sing N N 335 VAL N H sing N N 336 VAL N H2 sing N N 337 VAL CA C sing N N 338 VAL CA CB sing N N 339 VAL CA HA sing N N 340 VAL C O doub N N 341 VAL C OXT sing N N 342 VAL CB CG1 sing N N 343 VAL CB CG2 sing N N 344 VAL CB HB sing N N 345 VAL CG1 HG11 sing N N 346 VAL CG1 HG12 sing N N 347 VAL CG1 HG13 sing N N 348 VAL CG2 HG21 sing N N 349 VAL CG2 HG22 sing N N 350 VAL CG2 HG23 sing N N 351 VAL OXT HXT sing N N 352 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SODIUM ION' NA 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2R2O _pdbx_initial_refinement_model.details 'PDB entry 2R2O' #