HEADER TRANSFERASE 22-MAR-12 4EAJ TITLE CO-CRYSTAL OF AMPK CORE WITH AMP SOAKED WITH ATP COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-AMP-ACTIVATED PROTEIN KINASE CATALYTIC SUBUNIT ALPHA-1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AMPK SUBUNIT ALPHA-1,ACETYL-COA CARBOXYLASE KINASE,ACACA COMPND 5 KINASE,HYDROXYMETHYLGLUTARYL-COA REDUCTASE KINASE,HMGCR KINASE,TAU- COMPND 6 PROTEIN KINASE PRKAA1; COMPND 7 EC: 2.7.11.1,2.7.11.27,2.7.11.31,2.7.11.26; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: CHIMERA PROTEIN OF RESIDUES 405-479 AND RESIDUES 540- COMPND 10 559 FROM 5'-AMP-ACTIVATED PROTEIN KINASE CATALYTIC SUBUNIT ALPHA-1 COMPND 11 (UNIPROT P54645), LINKED BY LINKER GGGGGG; COMPND 12 MOL_ID: 2; COMPND 13 MOLECULE: 5'-AMP-ACTIVATED PROTEIN KINASE SUBUNIT BETA-2; COMPND 14 CHAIN: B; COMPND 15 FRAGMENT: UNP RESIDUES 189-272; COMPND 16 SYNONYM: AMPK SUBUNIT BETA-2; COMPND 17 ENGINEERED: YES; COMPND 18 MOL_ID: 3; COMPND 19 MOLECULE: 5'-AMP-ACTIVATED PROTEIN KINASE SUBUNIT GAMMA-1; COMPND 20 CHAIN: C; COMPND 21 SYNONYM: AMPKG; COMPND 22 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: PRKAA1, AMPK1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: PRKAB2; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 17 MOL_ID: 3; SOURCE 18 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 19 ORGANISM_COMMON: RAT; SOURCE 20 ORGANISM_TAXID: 10116; SOURCE 21 GENE: PRKAG1; SOURCE 22 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 23 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 24 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS AMPK, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR L.CHEN,J.WANG,Y.-Y.ZHANG,S.F.YAN,D.NEUMANN,U.SCHLATTNER,Z.-X.WANG,J.- AUTHOR 2 W.WU REVDAT 4 08-NOV-23 4EAJ 1 REMARK REVDAT 3 21-JUN-17 4EAJ 1 COMPND SOURCE REVDAT 2 12-MAR-14 4EAJ 1 JRNL REVDAT 1 06-JUN-12 4EAJ 0 JRNL AUTH L.CHEN,J.WANG,Y.-Y.ZHANG,S.F.YAN,D.NEUMANN,U.SCHLATTNER, JRNL AUTH 2 Z.-X.WANG,J.-W.WU JRNL TITL AMP-ACTIVATED PROTEIN KINASE UNDERGOES NUCLEOTIDE-DEPENDENT JRNL TITL 2 CONFORMATIONAL CHANGES JRNL REF NAT.STRUCT.MOL.BIOL. V. 19 716 2012 JRNL REFN ISSN 1545-9993 JRNL PMID 22659875 JRNL DOI 10.1038/NSMB.2319 REMARK 2 REMARK 2 RESOLUTION. 2.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.5_2 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.080 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 3 NUMBER OF REFLECTIONS : 16423 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 826 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.6106 - 4.7362 0.99 2889 146 0.2043 0.2409 REMARK 3 2 4.7362 - 3.7617 0.99 2751 138 0.1637 0.2266 REMARK 3 3 3.7617 - 3.2869 0.98 2682 147 0.1938 0.2515 REMARK 3 4 3.2869 - 2.9867 0.96 2647 121 0.2192 0.3068 REMARK 3 5 2.9867 - 2.7728 0.92 2472 144 0.2241 0.2787 REMARK 3 6 2.7728 - 2.6094 0.81 2156 130 0.2388 0.3013 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 42.54 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.030 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.70780 REMARK 3 B22 (A**2) : -1.09580 REMARK 3 B33 (A**2) : -4.61210 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3710 REMARK 3 ANGLE : 1.032 5045 REMARK 3 CHIRALITY : 0.060 591 REMARK 3 PLANARITY : 0.004 604 REMARK 3 DIHEDRAL : 19.957 1349 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 394:425) REMARK 3 ORIGIN FOR THE GROUP (A): 3.9430 39.4771 -13.7987 REMARK 3 T TENSOR REMARK 3 T11: 0.3575 T22: 0.2586 REMARK 3 T33: 0.4204 T12: -0.0881 REMARK 3 T13: -0.1803 T23: -0.0537 REMARK 3 L TENSOR REMARK 3 L11: 0.1846 L22: 1.0215 REMARK 3 L33: 0.3190 L12: 0.1709 REMARK 3 L13: -0.1847 L23: -0.7870 REMARK 3 S TENSOR REMARK 3 S11: 0.1682 S12: -0.1258 S13: 0.0905 REMARK 3 S21: 0.4877 S22: -0.1605 S23: -0.1210 REMARK 3 S31: -0.2292 S32: 0.0999 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 426:445) REMARK 3 ORIGIN FOR THE GROUP (A): 10.7158 29.0297 -18.8639 REMARK 3 T TENSOR REMARK 3 T11: 0.2910 T22: 0.4335 REMARK 3 T33: 0.6857 T12: 0.0026 REMARK 3 T13: 0.0410 T23: 0.0803 REMARK 3 L TENSOR REMARK 3 L11: 0.1596 L22: 0.2300 REMARK 3 L33: 0.3040 L12: 0.2085 REMARK 3 L13: 0.1359 L23: 0.2685 REMARK 3 S TENSOR REMARK 3 S11: -0.0495 S12: 0.2103 S13: 0.3176 REMARK 3 S21: 0.0562 S22: -0.2308 S23: -0.9936 REMARK 3 S31: 0.1494 S32: 0.1475 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 446:472) REMARK 3 ORIGIN FOR THE GROUP (A): 0.4458 36.6045 -21.2222 REMARK 3 T TENSOR REMARK 3 T11: 0.2977 T22: 0.2366 REMARK 3 T33: 0.4089 T12: 0.0197 REMARK 3 T13: -0.0637 T23: -0.0179 REMARK 3 L TENSOR REMARK 3 L11: 0.5774 L22: 0.3306 REMARK 3 L33: 1.0967 L12: 0.5081 REMARK 3 L13: -0.4769 L23: -0.1622 REMARK 3 S TENSOR REMARK 3 S11: -0.1442 S12: 0.3915 S13: -0.0852 REMARK 3 S21: -0.1705 S22: -0.1159 S23: 0.3544 REMARK 3 S31: -0.1464 S32: 0.1419 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 473:493) REMARK 3 ORIGIN FOR THE GROUP (A): 2.0857 26.8124 -12.0190 REMARK 3 T TENSOR REMARK 3 T11: 0.2790 T22: 0.3323 REMARK 3 T33: 0.3227 T12: 0.0106 REMARK 3 T13: -0.0920 T23: -0.0354 REMARK 3 L TENSOR REMARK 3 L11: 0.1278 L22: 0.1341 REMARK 3 L33: 0.0099 L12: 0.1403 REMARK 3 L13: 0.0464 L23: 0.0329 REMARK 3 S TENSOR REMARK 3 S11: -0.2629 S12: -0.0466 S13: 0.0421 REMARK 3 S21: 0.4627 S22: 0.4970 S23: -0.7557 REMARK 3 S31: -0.1635 S32: 0.6414 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 204:210) REMARK 3 ORIGIN FOR THE GROUP (A): -3.4007 44.1068 -27.5856 REMARK 3 T TENSOR REMARK 3 T11: 0.4654 T22: 0.2457 REMARK 3 T33: 0.5539 T12: 0.0011 REMARK 3 T13: -0.2784 T23: 0.0744 REMARK 3 L TENSOR REMARK 3 L11: 0.2983 L22: 0.0843 REMARK 3 L33: 0.1990 L12: 0.0672 REMARK 3 L13: -0.1443 L23: -0.0546 REMARK 3 S TENSOR REMARK 3 S11: 0.1251 S12: -0.0994 S13: 0.5586 REMARK 3 S21: -0.4295 S22: -0.5449 S23: -0.5137 REMARK 3 S31: -0.3789 S32: 0.4332 S33: 0.0074 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 211:236) REMARK 3 ORIGIN FOR THE GROUP (A): -13.2337 34.9134 -23.0428 REMARK 3 T TENSOR REMARK 3 T11: 0.5387 T22: 0.3622 REMARK 3 T33: 0.5623 T12: -0.0347 REMARK 3 T13: 0.0291 T23: 0.0465 REMARK 3 L TENSOR REMARK 3 L11: 0.0690 L22: 0.0657 REMARK 3 L33: 0.0184 L12: -0.0679 REMARK 3 L13: -0.0072 L23: -0.0455 REMARK 3 S TENSOR REMARK 3 S11: 0.7054 S12: 0.5620 S13: 0.8820 REMARK 3 S21: -0.4064 S22: 0.2743 S23: 0.9339 REMARK 3 S31: 0.1816 S32: 0.2674 S33: -0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 237:245) REMARK 3 ORIGIN FOR THE GROUP (A): -7.2918 30.7039 -19.4036 REMARK 3 T TENSOR REMARK 3 T11: 0.2626 T22: 0.2939 REMARK 3 T33: 0.2553 T12: -0.0690 REMARK 3 T13: 0.0489 T23: -0.0710 REMARK 3 L TENSOR REMARK 3 L11: 0.1310 L22: 0.2148 REMARK 3 L33: 0.1051 L12: 0.0463 REMARK 3 L13: 0.0946 L23: -0.1117 REMARK 3 S TENSOR REMARK 3 S11: -0.0023 S12: -0.1708 S13: 0.5654 REMARK 3 S21: -0.0423 S22: 0.1704 S23: -0.0300 REMARK 3 S31: -0.0072 S32: 0.1850 S33: 0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 246:251) REMARK 3 ORIGIN FOR THE GROUP (A): -9.8863 30.5189 -2.6683 REMARK 3 T TENSOR REMARK 3 T11: 0.4765 T22: 0.4272 REMARK 3 T33: 0.4747 T12: 0.0906 REMARK 3 T13: 0.0483 T23: -0.1826 REMARK 3 L TENSOR REMARK 3 L11: 0.0238 L22: 0.0488 REMARK 3 L33: 0.0298 L12: -0.0323 REMARK 3 L13: 0.0276 L23: -0.0137 REMARK 3 S TENSOR REMARK 3 S11: 0.3993 S12: 0.1609 S13: 0.2752 REMARK 3 S21: -0.0521 S22: -0.0809 S23: 0.1718 REMARK 3 S31: -0.2219 S32: 0.0776 S33: 0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN B AND RESID 252:271) REMARK 3 ORIGIN FOR THE GROUP (A): -7.0490 21.2012 -19.7473 REMARK 3 T TENSOR REMARK 3 T11: 0.2500 T22: 0.2422 REMARK 3 T33: 0.1984 T12: -0.0118 REMARK 3 T13: -0.0170 T23: -0.0323 REMARK 3 L TENSOR REMARK 3 L11: 0.2407 L22: 0.3589 REMARK 3 L33: 0.1395 L12: 0.2945 REMARK 3 L13: -0.2011 L23: -0.1258 REMARK 3 S TENSOR REMARK 3 S11: 0.0167 S12: -0.0393 S13: 0.2574 REMARK 3 S21: -0.1255 S22: -0.0528 S23: -0.2971 REMARK 3 S31: -0.3491 S32: 0.1565 S33: 0.0000 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN C AND RESID 26:106) REMARK 3 ORIGIN FOR THE GROUP (A): -12.6630 10.9400 -8.3677 REMARK 3 T TENSOR REMARK 3 T11: 0.1261 T22: 0.1708 REMARK 3 T33: 0.1640 T12: 0.0443 REMARK 3 T13: -0.0236 T23: -0.0317 REMARK 3 L TENSOR REMARK 3 L11: 0.4739 L22: 0.6155 REMARK 3 L33: 1.2874 L12: -0.0406 REMARK 3 L13: -0.0666 L23: -0.4273 REMARK 3 S TENSOR REMARK 3 S11: 0.0325 S12: -0.0077 S13: -0.0259 REMARK 3 S21: 0.0738 S22: -0.0255 S23: -0.1330 REMARK 3 S31: -0.2273 S32: -0.0772 S33: -0.0000 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN C AND RESID 107:126) REMARK 3 ORIGIN FOR THE GROUP (A): -8.6769 11.9947 5.0542 REMARK 3 T TENSOR REMARK 3 T11: 0.5580 T22: 0.6174 REMARK 3 T33: 0.2328 T12: -0.0991 REMARK 3 T13: 0.0450 T23: 0.0485 REMARK 3 L TENSOR REMARK 3 L11: 0.1784 L22: 0.1505 REMARK 3 L33: 0.0186 L12: 0.1533 REMARK 3 L13: -0.0765 L23: 0.0123 REMARK 3 S TENSOR REMARK 3 S11: -0.0853 S12: -0.6106 S13: 0.0879 REMARK 3 S21: -0.7245 S22: -0.2927 S23: 0.3098 REMARK 3 S31: -0.3830 S32: 0.8008 S33: -0.0000 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN C AND RESID 127:222) REMARK 3 ORIGIN FOR THE GROUP (A): -18.3300 -1.4163 -16.7417 REMARK 3 T TENSOR REMARK 3 T11: 0.1877 T22: 0.1319 REMARK 3 T33: 0.1190 T12: 0.0384 REMARK 3 T13: -0.0394 T23: -0.0074 REMARK 3 L TENSOR REMARK 3 L11: 2.0354 L22: 1.4018 REMARK 3 L33: 0.9517 L12: 0.9954 REMARK 3 L13: 0.1252 L23: 0.1934 REMARK 3 S TENSOR REMARK 3 S11: -0.0424 S12: 0.0358 S13: -0.1029 REMARK 3 S21: -0.0891 S22: 0.0289 S23: -0.1192 REMARK 3 S31: 0.2667 S32: -0.0551 S33: 0.0000 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN C AND RESID 223:265) REMARK 3 ORIGIN FOR THE GROUP (A): -32.6491 5.3370 -2.9323 REMARK 3 T TENSOR REMARK 3 T11: 0.3305 T22: 0.3424 REMARK 3 T33: 0.2579 T12: -0.0256 REMARK 3 T13: -0.0206 T23: -0.1052 REMARK 3 L TENSOR REMARK 3 L11: 0.1122 L22: 0.4347 REMARK 3 L33: 0.5869 L12: 0.3710 REMARK 3 L13: -0.0918 L23: 0.1447 REMARK 3 S TENSOR REMARK 3 S11: -0.0037 S12: -0.2785 S13: -0.0369 REMARK 3 S21: 0.3381 S22: -0.2354 S23: 0.1311 REMARK 3 S31: -0.0801 S32: -0.3489 S33: -0.0000 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN C AND RESID 266:273) REMARK 3 ORIGIN FOR THE GROUP (A): -36.6541 12.5014 -12.2365 REMARK 3 T TENSOR REMARK 3 T11: 1.3488 T22: 0.6683 REMARK 3 T33: 0.9235 T12: 0.0299 REMARK 3 T13: -0.1740 T23: -0.0366 REMARK 3 L TENSOR REMARK 3 L11: 0.0644 L22: 0.0250 REMARK 3 L33: 0.0332 L12: -0.0638 REMARK 3 L13: 0.0848 L23: -0.0265 REMARK 3 S TENSOR REMARK 3 S11: 0.4252 S12: 0.3741 S13: 0.5014 REMARK 3 S21: 0.0410 S22: 0.3590 S23: -0.4703 REMARK 3 S31: 0.0607 S32: -0.5708 S33: 0.0000 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN C AND RESID 274:324) REMARK 3 ORIGIN FOR THE GROUP (A): -30.4124 -5.9549 -18.2541 REMARK 3 T TENSOR REMARK 3 T11: 0.2343 T22: 0.2491 REMARK 3 T33: 0.2098 T12: -0.0507 REMARK 3 T13: -0.0058 T23: -0.0228 REMARK 3 L TENSOR REMARK 3 L11: 0.3711 L22: 0.6795 REMARK 3 L33: 0.3771 L12: 0.0673 REMARK 3 L13: -0.3459 L23: 0.3010 REMARK 3 S TENSOR REMARK 3 S11: 0.1564 S12: 0.0925 S13: -0.0198 REMARK 3 S21: 0.0111 S22: -0.1774 S23: -0.0200 REMARK 3 S31: -0.0015 S32: -0.2940 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4EAJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-APR-12. REMARK 100 THE DEPOSITION ID IS D_1000071375. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-SEP-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.26 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99583 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17204 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2V92 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MES PH 6.26, 16% IPP, 1% 1,4 REMARK 280 -BUTANEDIOL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298 K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 48.55200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 58.00300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 48.55200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 58.00300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 389 REMARK 465 PRO A 390 REMARK 465 HIS A 391 REMARK 465 MET A 392 REMARK 465 GLY A 393 REMARK 465 GLN A 494 REMARK 465 MET B 188 REMARK 465 TYR B 189 REMARK 465 GLY B 190 REMARK 465 GLN B 191 REMARK 465 GLU B 192 REMARK 465 MET B 193 REMARK 465 TYR B 194 REMARK 465 ALA B 195 REMARK 465 PHE B 196 REMARK 465 ARG B 197 REMARK 465 SER B 198 REMARK 465 GLU B 199 REMARK 465 GLU B 200 REMARK 465 ARG B 201 REMARK 465 PHE B 202 REMARK 465 LYS B 203 REMARK 465 LYS B 219 REMARK 465 ASP B 220 REMARK 465 THR B 221 REMARK 465 ASN B 222 REMARK 465 ILE B 223 REMARK 465 SER B 224 REMARK 465 CYS B 225 REMARK 465 ASP B 226 REMARK 465 PRO B 227 REMARK 465 ALA B 228 REMARK 465 LEU B 229 REMARK 465 LEU B 230 REMARK 465 PRO B 231 REMARK 465 GLU B 232 REMARK 465 PRO B 233 REMARK 465 ASN B 234 REMARK 465 HIS B 235 REMARK 465 ILE B 272 REMARK 465 MET C 1 REMARK 465 GLU C 2 REMARK 465 SER C 3 REMARK 465 VAL C 4 REMARK 465 ALA C 5 REMARK 465 ALA C 6 REMARK 465 GLU C 7 REMARK 465 SER C 8 REMARK 465 ALA C 9 REMARK 465 PRO C 10 REMARK 465 ALA C 11 REMARK 465 PRO C 12 REMARK 465 GLU C 13 REMARK 465 ASN C 14 REMARK 465 GLU C 15 REMARK 465 HIS C 16 REMARK 465 SER C 17 REMARK 465 GLN C 18 REMARK 465 GLU C 19 REMARK 465 THR C 20 REMARK 465 PRO C 21 REMARK 465 GLU C 22 REMARK 465 SER C 23 REMARK 465 ASN C 24 REMARK 465 SER C 25 REMARK 465 LEU C 121 REMARK 465 GLN C 122 REMARK 465 ASP C 123 REMARK 465 SER C 124 REMARK 465 PHE C 125 REMARK 465 GLU C 251 REMARK 465 LYS C 252 REMARK 465 THR C 253 REMARK 465 TYR C 254 REMARK 465 ASN C 255 REMARK 465 GLY C 325 REMARK 465 GLY C 326 REMARK 465 GLU C 327 REMARK 465 LYS C 328 REMARK 465 LYS C 329 REMARK 465 PRO C 330 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 421 32.81 75.95 REMARK 500 LEU A 492 -133.11 -65.99 REMARK 500 ASN B 239 -3.07 76.80 REMARK 500 LYS B 260 -129.89 55.78 REMARK 500 THR C 209 33.92 -96.30 REMARK 500 ASP C 231 -165.61 -114.42 REMARK 500 ASN C 247 -9.33 -52.86 REMARK 500 HIS C 267 28.23 -77.25 REMARK 500 ARG C 268 106.13 -55.04 REMARK 500 ASP C 303 -167.24 -108.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP C 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP C 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP C 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4EAG RELATED DB: PDB REMARK 900 RELATED ID: 4EAI RELATED DB: PDB REMARK 900 RELATED ID: 4EAK RELATED DB: PDB REMARK 900 RELATED ID: 4EAL RELATED DB: PDB DBREF 4EAJ A 394 468 UNP P54645 AAPK1_RAT 405 479 DBREF 4EAJ A 475 494 UNP P54645 AAPK1_RAT 540 559 DBREF 4EAJ B 189 272 UNP O43741 AAKB2_HUMAN 189 272 DBREF 4EAJ C 1 330 UNP P80385 AAKG1_RAT 1 330 SEQADV 4EAJ GLY A 389 UNP P54645 EXPRESSION TAG SEQADV 4EAJ PRO A 390 UNP P54645 EXPRESSION TAG SEQADV 4EAJ HIS A 391 UNP P54645 EXPRESSION TAG SEQADV 4EAJ MET A 392 UNP P54645 EXPRESSION TAG SEQADV 4EAJ GLY A 393 UNP P54645 EXPRESSION TAG SEQADV 4EAJ GLY A 469 UNP P54645 LINKER SEQADV 4EAJ GLY A 470 UNP P54645 LINKER SEQADV 4EAJ GLY A 471 UNP P54645 LINKER SEQADV 4EAJ GLY A 472 UNP P54645 LINKER SEQADV 4EAJ GLY A 473 UNP P54645 LINKER SEQADV 4EAJ GLY A 474 UNP P54645 LINKER SEQADV 4EAJ MET B 188 UNP O43741 EXPRESSION TAG SEQRES 1 A 106 GLY PRO HIS MET GLY ALA LYS TRP HIS LEU GLY ILE ARG SEQRES 2 A 106 SER GLN SER ARG PRO ASN ASP ILE MET ALA GLU VAL CYS SEQRES 3 A 106 ARG ALA ILE LYS GLN LEU ASP TYR GLU TRP LYS VAL VAL SEQRES 4 A 106 ASN PRO TYR TYR LEU ARG VAL ARG ARG LYS ASN PRO VAL SEQRES 5 A 106 THR SER THR PHE SER LYS MET SER LEU GLN LEU TYR GLN SEQRES 6 A 106 VAL ASP SER ARG THR TYR LEU LEU ASP PHE ARG SER ILE SEQRES 7 A 106 ASP ASP GLY GLY GLY GLY GLY GLY GLY SER HIS THR ILE SEQRES 8 A 106 GLU PHE PHE GLU MET CYS ALA ASN LEU ILE LYS ILE LEU SEQRES 9 A 106 ALA GLN SEQRES 1 B 85 MET TYR GLY GLN GLU MET TYR ALA PHE ARG SER GLU GLU SEQRES 2 B 85 ARG PHE LYS SER PRO PRO ILE LEU PRO PRO HIS LEU LEU SEQRES 3 B 85 GLN VAL ILE LEU ASN LYS ASP THR ASN ILE SER CYS ASP SEQRES 4 B 85 PRO ALA LEU LEU PRO GLU PRO ASN HIS VAL MET LEU ASN SEQRES 5 B 85 HIS LEU TYR ALA LEU SER ILE LYS ASP SER VAL MET VAL SEQRES 6 B 85 LEU SER ALA THR HIS ARG TYR LYS LYS LYS TYR VAL THR SEQRES 7 B 85 THR LEU LEU TYR LYS PRO ILE SEQRES 1 C 330 MET GLU SER VAL ALA ALA GLU SER ALA PRO ALA PRO GLU SEQRES 2 C 330 ASN GLU HIS SER GLN GLU THR PRO GLU SER ASN SER SER SEQRES 3 C 330 VAL TYR THR THR PHE MET LYS SER HIS ARG CYS TYR ASP SEQRES 4 C 330 LEU ILE PRO THR SER SER LYS LEU VAL VAL PHE ASP THR SEQRES 5 C 330 SER LEU GLN VAL LYS LYS ALA PHE PHE ALA LEU VAL THR SEQRES 6 C 330 ASN GLY VAL ARG ALA ALA PRO LEU TRP ASP SER LYS LYS SEQRES 7 C 330 GLN SER PHE VAL GLY MET LEU THR ILE THR ASP PHE ILE SEQRES 8 C 330 ASN ILE LEU HIS ARG TYR TYR LYS SER ALA LEU VAL GLN SEQRES 9 C 330 ILE TYR GLU LEU GLU GLU HIS LYS ILE GLU THR TRP ARG SEQRES 10 C 330 GLU VAL TYR LEU GLN ASP SER PHE LYS PRO LEU VAL CYS SEQRES 11 C 330 ILE SER PRO ASN ALA SER LEU PHE ASP ALA VAL SER SER SEQRES 12 C 330 LEU ILE ARG ASN LYS ILE HIS ARG LEU PRO VAL ILE ASP SEQRES 13 C 330 PRO GLU SER GLY ASN THR LEU TYR ILE LEU THR HIS LYS SEQRES 14 C 330 ARG ILE LEU LYS PHE LEU LYS LEU PHE ILE THR GLU PHE SEQRES 15 C 330 PRO LYS PRO GLU PHE MET SER LYS SER LEU GLU GLU LEU SEQRES 16 C 330 GLN ILE GLY THR TYR ALA ASN ILE ALA MET VAL ARG THR SEQRES 17 C 330 THR THR PRO VAL TYR VAL ALA LEU GLY ILE PHE VAL GLN SEQRES 18 C 330 HIS ARG VAL SER ALA LEU PRO VAL VAL ASP GLU LYS GLY SEQRES 19 C 330 ARG VAL VAL ASP ILE TYR SER LYS PHE ASP VAL ILE ASN SEQRES 20 C 330 LEU ALA ALA GLU LYS THR TYR ASN ASN LEU ASP VAL SER SEQRES 21 C 330 VAL THR LYS ALA LEU GLN HIS ARG SER HIS TYR PHE GLU SEQRES 22 C 330 GLY VAL LEU LYS CYS TYR LEU HIS GLU THR LEU GLU ALA SEQRES 23 C 330 ILE ILE ASN ARG LEU VAL GLU ALA GLU VAL HIS ARG LEU SEQRES 24 C 330 VAL VAL VAL ASP GLU HIS ASP VAL VAL LYS GLY ILE VAL SEQRES 25 C 330 SER LEU SER ASP ILE LEU GLN ALA LEU VAL LEU THR GLY SEQRES 26 C 330 GLY GLU LYS LYS PRO HET ATP C 401 31 HET ATP C 402 31 HET AMP C 403 23 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM AMP ADENOSINE MONOPHOSPHATE FORMUL 4 ATP 2(C10 H16 N5 O13 P3) FORMUL 6 AMP C10 H14 N5 O7 P FORMUL 7 HOH *54(H2 O) HELIX 1 1 ARG A 405 ASP A 421 1 17 HELIX 2 2 SER A 476 LEU A 492 1 17 HELIX 3 3 VAL C 27 SER C 34 1 8 HELIX 4 4 ARG C 36 ILE C 41 5 6 HELIX 5 5 GLN C 55 GLY C 67 1 13 HELIX 6 6 ILE C 87 LEU C 102 1 16 HELIX 7 7 LYS C 112 TYR C 120 1 9 HELIX 8 8 SER C 136 LYS C 148 1 13 HELIX 9 9 THR C 167 ILE C 179 1 13 HELIX 10 10 PRO C 185 LYS C 190 5 6 HELIX 11 11 SER C 191 GLN C 196 1 6 HELIX 12 12 PRO C 211 ARG C 223 1 13 HELIX 13 13 VAL C 245 ALA C 249 5 5 HELIX 14 14 SER C 260 LEU C 265 1 6 HELIX 15 15 THR C 283 GLU C 295 1 13 HELIX 16 16 LEU C 314 LEU C 323 1 10 SHEET 1 A 8 VAL B 215 LEU B 217 0 SHEET 2 A 8 LYS A 395 LEU A 398 -1 N TRP A 396 O ILE B 216 SHEET 3 A 8 TYR B 242 LEU B 244 -1 O ALA B 243 N HIS A 397 SHEET 4 A 8 MET B 251 TYR B 259 -1 O SER B 254 N TYR B 242 SHEET 5 A 8 LYS B 262 LYS B 270 -1 O LYS B 270 N MET B 251 SHEET 6 A 8 SER C 44 ASP C 51 1 O VAL C 49 N LEU B 267 SHEET 7 A 8 ALA C 70 ASP C 75 1 O TRP C 74 N PHE C 50 SHEET 8 A 8 SER C 80 THR C 86 -1 O LEU C 85 N ALA C 71 SHEET 1 B 5 ILE A 400 SER A 402 0 SHEET 2 B 5 TYR A 459 SER A 465 -1 O TYR A 459 N SER A 402 SHEET 3 B 5 PHE A 444 GLN A 453 -1 N GLN A 450 O ASP A 462 SHEET 4 B 5 TYR A 431 LYS A 437 -1 N LEU A 432 O LEU A 449 SHEET 5 B 5 GLU A 423 ASN A 428 -1 N GLU A 423 O ARG A 435 SHEET 1 C 2 LEU C 152 ILE C 155 0 SHEET 2 C 2 THR C 162 LEU C 166 -1 O LEU C 163 N VAL C 154 SHEET 1 D 3 VAL C 206 ARG C 207 0 SHEET 2 D 3 ALA C 226 VAL C 230 1 O PRO C 228 N VAL C 206 SHEET 3 D 3 VAL C 236 SER C 241 -1 O TYR C 240 N LEU C 227 SHEET 1 E 3 LYS C 277 CYS C 278 0 SHEET 2 E 3 ARG C 298 VAL C 302 1 O VAL C 302 N CYS C 278 SHEET 3 E 3 VAL C 308 SER C 313 -1 O VAL C 312 N LEU C 299 CISPEP 1 GLY A 470 GLY A 471 0 -2.80 CISPEP 2 GLY A 472 GLY A 473 0 0.00 CISPEP 3 GLY A 473 GLY A 474 0 2.78 CISPEP 4 PRO B 210 HIS B 211 0 11.96 CISPEP 5 PHE C 182 PRO C 183 0 11.66 SITE 1 AC1 15 ARG C 69 ARG C 151 LYS C 169 ILE C 239 SITE 2 AC1 15 SER C 241 PHE C 243 ASP C 244 ARG C 268 SITE 3 AC1 15 PHE C 272 GLY C 274 VAL C 275 LEU C 276 SITE 4 AC1 15 VAL C 296 HIS C 297 ARG C 298 SITE 1 AC2 13 ARG C 69 MET C 84 THR C 86 ILE C 87 SITE 2 AC2 13 THR C 88 ASP C 89 PRO C 127 VAL C 129 SITE 3 AC2 13 HIS C 150 ARG C 151 PRO C 153 SER C 225 SITE 4 AC2 13 HOH C 507 SITE 1 AC3 15 HIS C 150 THR C 199 ASN C 202 ILE C 203 SITE 2 AC3 15 ALA C 204 VAL C 224 SER C 225 ALA C 226 SITE 3 AC3 15 PRO C 228 HIS C 297 SER C 313 SER C 315 SITE 4 AC3 15 ASP C 316 HOH C 502 HOH C 507 CRYST1 97.104 116.006 48.840 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010298 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008620 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020475 0.00000