HEADER HYDROLASE/SUGAR BINDING PROTEIN 23-MAR-12 4EB2 TITLE CRYSTAL STRUCTURE MISTLETOE LECTIN I FROM VISCUM ALBUM IN COMPLEX WITH TITLE 2 N-ACETYL-D-GLUCOSAMINE AT 1.94 A RESOLUTION. COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-GALACTOSIDE-SPECIFIC LECTIN 1 CHAIN A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEE REMARK 999; COMPND 5 SYNONYM: VISCUMIN, BETA-GALACTOSIDE-SPECIFIC LECTIN I CHAIN A, ML-I COMPND 6 A, MLA, RRNA N-GLYCOSIDASE; COMPND 7 EC: 3.2.2.22; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: BETA-GALACTOSIDE-SPECIFIC LECTIN 1 CHAIN B; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: SEE REMARK 999; COMPND 12 SYNONYM: VISCUMIN, BETA-GALACTOSIDE-SPECIFIC LECTIN I CHAIN B, ML-I COMPND 13 B, MLB SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VISCUM ALBUM; SOURCE 3 ORGANISM_COMMON: EUROPEAN MISTLETOE; SOURCE 4 ORGANISM_TAXID: 3972; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: VISCUM ALBUM; SOURCE 7 ORGANISM_COMMON: EUROPEAN MISTLETOE; SOURCE 8 ORGANISM_TAXID: 3972 KEYWDS ROSSMANN FOLD, RIBOSOME-INACTIVATING PROTEIN TYPE II, GLYCOPROTEIN, KEYWDS 2 PLANT DEFENSE, PROTEIN SYNTHESIS INHIBITOR, TOXIN, SARCIN/RICIN KEYWDS 3 DOMAIN, GALACTOSE BINDING RECEPTOR, HYDROLASE-SUGAR BINDING PROTEIN KEYWDS 4 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.A.LASKOV,I.I.PROKOFEV,A.G.GABDOULKHAKOV,C.BETZEL,A.M.MIKHAILOV REVDAT 3 13-SEP-23 4EB2 1 HETSYN REVDAT 2 29-JUL-20 4EB2 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 27-MAR-13 4EB2 0 JRNL AUTH A.A.LASKOV,I.I.PROKOFEV,A.G.GABDOULKHAKOV,C.BETZEL, JRNL AUTH 2 A.M.MIKHAILOV JRNL TITL CRYSTAL STRUCTURE MISTLETOE LECTIN I FROM VISCUM ALBUM IN JRNL TITL 2 COMPLEX WITH N-ACETYL-D-GLUCOSAMINE AT 1.94 A RESOLUTION. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.3_928 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 76180 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3809 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 7.9976 - 5.2389 0.99 2921 153 0.1946 0.2306 REMARK 3 2 5.2389 - 4.3734 0.99 2832 149 0.1303 0.1476 REMARK 3 3 4.3734 - 3.8926 1.00 2788 147 0.1220 0.1532 REMARK 3 4 3.8926 - 3.5713 1.00 2756 145 0.1470 0.1876 REMARK 3 5 3.5713 - 3.3352 1.00 2780 147 0.1632 0.2183 REMARK 3 6 3.3352 - 3.1513 1.00 2739 144 0.1762 0.2107 REMARK 3 7 3.1513 - 3.0022 1.00 2754 145 0.1586 0.2372 REMARK 3 8 3.0022 - 2.8779 1.00 2741 144 0.1608 0.2055 REMARK 3 9 2.8779 - 2.7719 1.00 2729 144 0.1671 0.2490 REMARK 3 10 2.7719 - 2.6799 1.00 2689 141 0.1898 0.2126 REMARK 3 11 2.6799 - 2.5991 0.98 2695 142 0.1963 0.2827 REMARK 3 12 2.5991 - 2.5272 0.98 2662 140 0.1796 0.2253 REMARK 3 13 2.5272 - 2.4627 0.98 2667 141 0.1783 0.2314 REMARK 3 14 2.4627 - 2.4043 0.99 2667 140 0.1713 0.2543 REMARK 3 15 2.4043 - 2.3510 0.99 2658 140 0.1961 0.2621 REMARK 3 16 2.3510 - 2.3022 0.98 2680 141 0.2241 0.3194 REMARK 3 17 2.3022 - 2.2572 0.98 2647 139 0.2602 0.3117 REMARK 3 18 2.2572 - 2.2155 0.97 2606 138 0.2701 0.3935 REMARK 3 19 2.2155 - 2.1768 0.97 2598 136 0.2705 0.3492 REMARK 3 20 2.1768 - 2.1406 0.97 2607 138 0.2527 0.3219 REMARK 3 21 2.1406 - 2.1067 0.97 2624 138 0.2372 0.2985 REMARK 3 22 2.1067 - 2.0748 0.97 2613 137 0.2522 0.2736 REMARK 3 23 2.0748 - 2.0448 0.97 2624 138 0.2796 0.3235 REMARK 3 24 2.0448 - 2.0165 0.98 2585 137 0.2996 0.3691 REMARK 3 25 2.0165 - 1.9897 0.98 2641 139 0.3112 0.3608 REMARK 3 26 1.9897 - 1.9642 0.98 2673 140 0.3422 0.3657 REMARK 3 27 1.9642 - 1.9400 0.90 2395 126 0.4380 0.4780 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.46 REMARK 3 B_SOL : 72.94 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.010 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.01900 REMARK 3 B22 (A**2) : 1.01900 REMARK 3 B33 (A**2) : -2.03810 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4234 REMARK 3 ANGLE : 1.011 5727 REMARK 3 CHIRALITY : 0.071 654 REMARK 3 PLANARITY : 0.004 739 REMARK 3 DIHEDRAL : 13.344 1545 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4EB2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1000071394. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 3.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X13 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.81 REMARK 200 MONOCHROMATOR : HORIZONTALLY FOCUSING SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 77457 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.940 REMARK 200 RESOLUTION RANGE LOW (A) : 29.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.17200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1SZ6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.01 M SODIUM ACETATE, 25% SATURATED REMARK 280 AMMONIUM SULFATE, 0.1 M GLYCIN/HCL BUFFER, PH 3.4, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 207.46733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 103.73367 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 155.60050 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 51.86683 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 259.33417 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 207.46733 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 103.73367 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 51.86683 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 155.60050 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 259.33417 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 53.52900 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -92.71495 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -51.86683 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 112 O5 NAG A 301 1.96 REMARK 500 ND2 ASN B 96 O5 NAG B 305 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 163 -73.41 -116.60 REMARK 500 LEU A 222 -161.46 -121.77 REMARK 500 ALA B 7 -26.11 -159.71 REMARK 500 ASP B 80 116.97 -39.59 REMARK 500 GLN B 238 -5.47 71.53 REMARK 500 ASN B 240 90.08 -171.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PEG A 310 REMARK 610 PEG A 311 REMARK 610 PEG A 313 REMARK 610 PEG A 312 REMARK 610 PEG B 313 REMARK 610 PEG B 314 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1M2T RELATED DB: PDB REMARK 900 RELATED ID: 1SZ6 RELATED DB: PDB REMARK 900 RELATED ID: 1PUM RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE AUTHORS STATE THAT BETA-GALACTOSIDE-SPECIFIC LECTIN 1 (VISCUMIN) REMARK 999 FROM NATURAL SOURCES IS VARIABLE IN SEQUENCE AND THAT THE SEQUENCE REMARK 999 IN THIS ENTRY WAS IDENTIFIED FROM ELECTRON DENSITY. THE CLOSEST REMARK 999 UNIPROT REFERENCE IS P81446 (ML1_VISAL) RESIDUES 34-482 FOR CHAIN A REMARK 999 AND RESIDUES 302-564 FOR CHAIN B. DBREF 4EB2 A 1 249 PDB 4EB2 4EB2 1 249 DBREF 4EB2 B 1 263 PDB 4EB2 4EB2 1 263 SEQRES 1 A 249 TYR GLU ARG LEU SER LEU ARG THR VAL GLN GLN THR THR SEQRES 2 A 249 GLY ALA GLU TYR PHE SER PHE ILE THR LEU LEU ARG ASP SEQRES 3 A 249 PHE VAL SER SER GLY SER PHE SER ASN GLN ILE PRO LEU SEQRES 4 A 249 LEU ARG GLN SER THR ILE PRO VAL SER GLU GLY GLN ARG SEQRES 5 A 249 PHE VAL LEU VAL GLU LEU THR ASN ALA GLY GLY ASP SER SEQRES 6 A 249 ILE THR ALA ALA ILE ASP VAL THR ASN LEU TYR VAL VAL SEQRES 7 A 249 ALA TYR GLN ALA GLY ARG GLN SER TYR PHE LEU LYS ASP SEQRES 8 A 249 ALA PRO ALA GLY ALA GLU THR GLN ASP PHE ALA GLY THR SEQRES 9 A 249 THR ARG SER SER LEU PRO PHE ASN GLY SER TYR PRO ASP SEQRES 10 A 249 LEU GLU ARG TYR ALA GLY HIS ARG ASP GLN ILE PRO LEU SEQRES 11 A 249 GLY ILE ASP GLN LEU ILE ALA SER VAL THR ALA LEU ARG SEQRES 12 A 249 PHE PRO GLY GLY GLN THR ARG THR GLN ALA ARG SER ILE SEQRES 13 A 249 LEU ILE LEU ILE GLN MET ILE SER GLU ALA ALA ARG PHE SEQRES 14 A 249 ASN PRO ILE LEU TRP ARG ALA ARG GLN TYR ILE ASN SER SEQRES 15 A 249 GLY ALA SER PHE LEU PRO ASP VAL TYR MET LEU GLU LEU SEQRES 16 A 249 GLU THR SER TRP GLY GLN GLN SER THR GLN VAL GLN HIS SEQRES 17 A 249 SER THR ASP GLY VAL PHE ASN ASN PRO ILE ALA LEU ALA SEQRES 18 A 249 LEU SER PRO GLY SER VAL VAL THR LEU THR ASN VAL ARG SEQRES 19 A 249 ASP VAL ILE ALA SER LEU ALA ILE MET LEU PHE VAL CYS SEQRES 20 A 249 GLY GLU SEQRES 1 B 263 ASP ASP VAL THR CYS SER ALA SER GLU PRO ILE VAL ARG SEQRES 2 B 263 ILE VAL GLY ARG ASN GLY MET THR VAL ASP VAL ARG ASP SEQRES 3 B 263 ASP ASP PHE GLN ASP GLY ASN GLN ILE GLN LEU TRP PRO SEQRES 4 B 263 SER LYS SER ASN ASN ASP PRO ASN GLN LEU TRP THR ILE SEQRES 5 B 263 LYS LYS ASP GLY THR ILE ARG SER ASN GLY SER CYS LEU SEQRES 6 B 263 THR THR TYR GLY TYR THR ALA GLY VAL TYR VAL MET ILE SEQRES 7 B 263 PHE ASP CYS ASN THR ALA VAL ARG GLU ALA THR ILE TRP SEQRES 8 B 263 GLN ILE TRP GLY ASN GLY THR ILE ILE ASN PRO ARG SER SEQRES 9 B 263 ASN LEU VAL LEU ALA ALA SER SER GLY ILE LYS GLY THR SEQRES 10 B 263 THR LEU THR VAL GLN THR LEU ASP TYR THR LEU GLY GLN SEQRES 11 B 263 GLY TRP LEU ALA GLY ASN ASP THR ALA PRO ARG GLU VAL SEQRES 12 B 263 THR ILE TYR GLY PHE ARG ASP LEU CYS MET GLU SER ALA SEQRES 13 B 263 GLY GLY SER VAL GLN VAL GLU THR CYS THR ALA GLY GLN SEQRES 14 B 263 GLU ASN GLN ARG TRP ALA LEU TYR GLY ASP GLY SER ILE SEQRES 15 B 263 ARG PRO LYS GLN ASN GLN SER GLN CYS LEU THR ASN GLY SEQRES 16 B 263 ARG ASP SER VAL SER THR VAL ILE ASN ILE VAL SER CYS SEQRES 17 B 263 SER ALA GLY SER SER GLY GLN ARG TRP VAL PHE THR ASN SEQRES 18 B 263 ALA GLY ALA ILE LEU ASN LEU LYS ASN GLY LEU ALA MET SEQRES 19 B 263 ASP VAL ALA GLN ALA ASN PRO ALA LEU ALA ARG ILE ILE SEQRES 20 B 263 ILE TYR PRO ALA THR GLY ASN PRO ASN GLN MET TRP LEU SEQRES 21 B 263 PRO VAL PRO MODRES 4EB2 ASN B 136 ASN GLYCOSYLATION SITE MODRES 4EB2 ASN B 96 ASN GLYCOSYLATION SITE MODRES 4EB2 ASN B 61 ASN GLYCOSYLATION SITE MODRES 4EB2 ASN A 112 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET NAG A 301 14 HET SO4 A 302 5 HET SO4 A 303 5 HET GOL A 304 6 HET GOL A 305 6 HET GOL A 306 6 HET GOL A 307 6 HET EDO A 308 4 HET CL A 309 1 HET PEG A 310 4 HET PEG A 311 4 HET PEG A 313 4 HET PEG A 312 4 HET AZI B 301 3 HET NAG B 302 14 HET NAG B 305 14 HET GOL B 306 6 HET GOL B 307 6 HET GOL B 308 6 HET EDO B 309 4 HET EDO B 310 4 HET EDO B 311 4 HET EDO B 312 4 HET PEG B 313 4 HET PEG B 314 4 HET PEG B 315 7 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM AZI AZIDE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NAG 5(C8 H15 N O6) FORMUL 5 SO4 2(O4 S 2-) FORMUL 7 GOL 7(C3 H8 O3) FORMUL 11 EDO 5(C2 H6 O2) FORMUL 12 CL CL 1- FORMUL 13 PEG 7(C4 H10 O3) FORMUL 17 AZI N3 1- FORMUL 30 HOH *231(H2 O) HELIX 1 1 THR A 13 VAL A 28 1 16 HELIX 2 2 GLY A 95 GLN A 99 5 5 HELIX 3 3 PRO A 116 GLY A 123 1 8 HELIX 4 4 HIS A 124 ILE A 128 5 5 HELIX 5 5 GLY A 131 PHE A 144 1 14 HELIX 6 6 GLN A 148 ILE A 163 1 16 HELIX 7 7 ILE A 163 PHE A 169 1 7 HELIX 8 8 PHE A 169 GLY A 183 1 15 HELIX 9 9 ASP A 189 THR A 197 1 9 HELIX 10 10 SER A 198 SER A 209 1 12 HELIX 11 11 VAL A 233 ILE A 237 1 5 HELIX 12 12 GLY B 16 MET B 20 5 5 HELIX 13 13 ASP B 26 ASP B 28 5 3 HELIX 14 14 ASP B 45 LEU B 49 5 5 HELIX 15 15 VAL B 85 ILE B 90 5 6 HELIX 16 16 THR B 127 GLY B 131 5 5 HELIX 17 17 GLY B 147 ARG B 149 5 3 HELIX 18 18 GLN B 169 ASN B 171 5 3 HELIX 19 19 SER B 212 GLN B 215 5 4 HELIX 20 20 GLN B 238 ASN B 240 5 3 HELIX 21 21 ASN B 254 MET B 258 5 5 SHEET 1 A 6 GLU A 2 THR A 8 0 SHEET 2 A 6 PHE A 53 ASN A 60 1 O LEU A 55 N LEU A 4 SHEET 3 A 6 SER A 65 ASP A 71 -1 O ALA A 68 N VAL A 56 SHEET 4 A 6 VAL A 77 ALA A 82 -1 O ALA A 79 N ALA A 69 SHEET 5 A 6 GLN A 85 PHE A 88 -1 O GLN A 85 N ALA A 82 SHEET 6 A 6 THR A 105 SER A 108 1 O THR A 105 N SER A 86 SHEET 1 B 2 SER A 29 SER A 34 0 SHEET 2 B 2 ILE A 37 LEU A 40 -1 O ILE A 37 N SER A 34 SHEET 1 C 2 VAL A 213 ALA A 221 0 SHEET 2 C 2 VAL A 227 ASN A 232 -1 O LEU A 230 N ILE A 218 SHEET 1 D 5 ILE B 11 VAL B 12 0 SHEET 2 D 5 TRP B 50 ILE B 52 -1 O TRP B 50 N VAL B 12 SHEET 3 D 5 ILE B 58 SER B 60 -1 O ARG B 59 N THR B 51 SHEET 4 D 5 SER B 63 THR B 67 -1 O SER B 63 N SER B 60 SHEET 5 D 5 VAL B 76 PHE B 79 -1 O PHE B 79 N CYS B 64 SHEET 1 E 2 ILE B 14 VAL B 15 0 SHEET 2 E 2 LEU B 133 ALA B 134 -1 O LEU B 133 N VAL B 15 SHEET 1 F 2 THR B 21 VAL B 24 0 SHEET 2 F 2 ILE B 35 TRP B 38 -1 O GLN B 36 N ASP B 23 SHEET 1 G 4 GLN B 92 ILE B 93 0 SHEET 2 G 4 ILE B 99 ASN B 101 -1 O ILE B 100 N GLN B 92 SHEET 3 G 4 LEU B 106 ALA B 109 -1 O LEU B 108 N ILE B 99 SHEET 4 G 4 THR B 120 GLN B 122 -1 O GLN B 122 N VAL B 107 SHEET 1 H 4 ILE B 182 PRO B 184 0 SHEET 2 H 4 ARG B 173 LEU B 176 -1 N ALA B 175 O ARG B 183 SHEET 3 H 4 ARG B 141 TYR B 146 -1 N ARG B 141 O LEU B 176 SHEET 4 H 4 LEU B 260 VAL B 262 -1 O VAL B 262 N THR B 144 SHEET 1 I 2 LEU B 151 ALA B 156 0 SHEET 2 I 2 SER B 159 THR B 164 -1 O GLN B 161 N GLU B 154 SHEET 1 J 2 GLN B 190 THR B 193 0 SHEET 2 J 2 ASN B 204 SER B 207 -1 O VAL B 206 N CYS B 191 SHEET 1 K 2 TRP B 217 PHE B 219 0 SHEET 2 K 2 ILE B 225 ASN B 227 -1 O LEU B 226 N VAL B 218 SHEET 1 L 2 ALA B 233 VAL B 236 0 SHEET 2 L 2 ILE B 246 TYR B 249 -1 O TYR B 249 N ALA B 233 SSBOND 1 CYS A 247 CYS B 5 1555 1555 2.04 SSBOND 2 CYS B 64 CYS B 81 1555 1555 2.05 SSBOND 3 CYS B 152 CYS B 165 1555 1555 2.04 SSBOND 4 CYS B 191 CYS B 208 1555 1555 2.04 LINK ND2 ASN A 112 C1 NAG A 301 1555 1555 1.70 LINK ND2 ASN B 61 C1 NAG B 302 1555 1555 1.59 LINK ND2 ASN B 96 C1 NAG B 305 1555 1555 1.37 LINK ND2 ASN B 136 C1 NAG C 1 1555 1555 1.33 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.31 CISPEP 1 TYR A 115 PRO A 116 0 1.89 CISPEP 2 TYR A 115 PRO A 116 0 -0.74 CRYST1 107.058 107.058 311.201 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009341 0.005393 0.000000 0.00000 SCALE2 0.000000 0.010786 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003213 0.00000