data_4EBG # _entry.id 4EBG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4EBG pdb_00004ebg 10.2210/pdb4ebg/pdb RCSB RCSB071408 ? ? WWPDB D_1000071408 ? ? # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id JCSG-417464 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 4EBG _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-03-23 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category CASP _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of a hypothetical protein (SAV0303) from Staphylococcus aureus subsp. aureus Mu50 at 1.35 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 4EBG _cell.length_a 32.244 _cell.length_b 35.058 _cell.length_c 50.073 _cell.angle_alpha 86.060 _cell.angle_beta 79.660 _cell.angle_gamma 71.600 _cell.pdbx_unique_axis ? _cell.Z_PDB 2 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4EBG _symmetry.Int_Tables_number 1 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Uncharacterized protein' 12219.255 2 ? ? 'UNP residues 25-124' ? 2 non-polymer syn 1,2-ETHANEDIOL 62.068 1 ? ? ? ? 3 non-polymer syn 'PHOSPHATE ION' 94.971 1 ? ? ? ? 4 water nat water 18.015 293 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GYQKDIDKVYKEQNQ(MSE)NKIASKVQNTIKTDIKQEDSNTHVYKDGKVIVIGIQLYKDREK(MSE)YYFAYEIKDGKA EINREIDPIKY(MSE)KDHKADYEDENVEVEKD ; _entity_poly.pdbx_seq_one_letter_code_can ;GYQKDIDKVYKEQNQMNKIASKVQNTIKTDIKQEDSNTHVYKDGKVIVIGIQLYKDREKMYYFAYEIKDGKAEINREIDP IKYMKDHKADYEDENVEVEKD ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier JCSG-417464 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 TYR n 1 3 GLN n 1 4 LYS n 1 5 ASP n 1 6 ILE n 1 7 ASP n 1 8 LYS n 1 9 VAL n 1 10 TYR n 1 11 LYS n 1 12 GLU n 1 13 GLN n 1 14 ASN n 1 15 GLN n 1 16 MSE n 1 17 ASN n 1 18 LYS n 1 19 ILE n 1 20 ALA n 1 21 SER n 1 22 LYS n 1 23 VAL n 1 24 GLN n 1 25 ASN n 1 26 THR n 1 27 ILE n 1 28 LYS n 1 29 THR n 1 30 ASP n 1 31 ILE n 1 32 LYS n 1 33 GLN n 1 34 GLU n 1 35 ASP n 1 36 SER n 1 37 ASN n 1 38 THR n 1 39 HIS n 1 40 VAL n 1 41 TYR n 1 42 LYS n 1 43 ASP n 1 44 GLY n 1 45 LYS n 1 46 VAL n 1 47 ILE n 1 48 VAL n 1 49 ILE n 1 50 GLY n 1 51 ILE n 1 52 GLN n 1 53 LEU n 1 54 TYR n 1 55 LYS n 1 56 ASP n 1 57 ARG n 1 58 GLU n 1 59 LYS n 1 60 MSE n 1 61 TYR n 1 62 TYR n 1 63 PHE n 1 64 ALA n 1 65 TYR n 1 66 GLU n 1 67 ILE n 1 68 LYS n 1 69 ASP n 1 70 GLY n 1 71 LYS n 1 72 ALA n 1 73 GLU n 1 74 ILE n 1 75 ASN n 1 76 ARG n 1 77 GLU n 1 78 ILE n 1 79 ASP n 1 80 PRO n 1 81 ILE n 1 82 LYS n 1 83 TYR n 1 84 MSE n 1 85 LYS n 1 86 ASP n 1 87 HIS n 1 88 LYS n 1 89 ALA n 1 90 ASP n 1 91 TYR n 1 92 GLU n 1 93 ASP n 1 94 GLU n 1 95 ASN n 1 96 VAL n 1 97 GLU n 1 98 VAL n 1 99 GLU n 1 100 LYS n 1 101 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene SAV0303 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'Mu50 / ATCC 700699' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Staphylococcus aureus subsp. aureus Mu50' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 158878 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain PB1 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q99WS4_STAAM _struct_ref.pdbx_db_accession Q99WS4 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;YQKDIDKVYKEQNQMNKIASKVQNTIKTDIKQEDSNTHVYKDGKVIVIGIQLYKDREKMYYFAYEIKDGKAEINREIDPI KYMKDHKADYEDENVEVEKD ; _struct_ref.pdbx_align_begin 25 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4EBG A 2 ? 101 ? Q99WS4 25 ? 124 ? 25 124 2 1 4EBG B 2 ? 101 ? Q99WS4 25 ? 124 ? 25 124 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4EBG GLY A 1 ? UNP Q99WS4 ? ? 'expression tag' 0 1 2 4EBG GLY B 1 ? UNP Q99WS4 ? ? 'expression tag' 0 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 4EBG # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.16 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 43.10 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '0.20M ammonium dihydrogen phosphate, 20.00% polyethylene glycol 3350, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.details 'Rhodium-coated vertical and horizontal focusing mirrors; liquid-nitrogen cooled double crystal Si(111) monochromator' _diffrn_detector.pdbx_collection_date 2012-03-10 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9794 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL12-2 _diffrn_source.type 'SSRL BEAMLINE BL12-2' _diffrn_source.pdbx_wavelength 0.9794 _diffrn_source.pdbx_wavelength_list ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 4EBG _reflns.d_resolution_high 1.20 _reflns.d_resolution_low 17.689 _reflns.number_all 49882 _reflns.number_obs 49882 _reflns.pdbx_netI_over_sigmaI 6.700 _reflns.pdbx_Rsym_value 0.089 _reflns.pdbx_redundancy 3.700 _reflns.percent_possible_obs 77.900 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.pdbx_Rmerge_I_obs ? _reflns.B_iso_Wilson_estimate 12.367 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.200 1.230 ? 11409 ? 0.885 0.7 0.885 ? 3.600 ? 3208 67.400 1 1 1.230 1.260 ? 13163 ? 0.762 0.8 0.762 ? 3.600 ? 3647 79.500 2 1 1.260 1.300 ? 13055 ? 0.639 1.0 0.639 ? 3.700 ? 3539 78.100 3 1 1.300 1.340 ? 11642 ? 0.516 1.2 0.516 ? 3.600 ? 3232 74.300 4 1 1.340 1.390 ? 11507 ? 0.398 1.6 0.398 ? 3.700 ? 3094 73.400 5 1 1.390 1.430 ? 12464 ? 0.339 1.7 0.339 ? 3.700 ? 3326 81.200 6 1 1.430 1.490 ? 11560 ? 0.274 1.2 0.274 ? 3.700 ? 3144 79.900 7 1 1.490 1.550 ? 10495 ? 0.199 3.3 0.199 ? 3.700 ? 2872 75.800 8 1 1.550 1.620 ? 9758 ? 0.167 4.0 0.167 ? 3.700 ? 2652 71.900 9 1 1.620 1.700 ? 10637 ? 0.142 4.7 0.142 ? 3.700 ? 2860 82.500 10 1 1.700 1.790 ? 10054 ? 0.126 5.0 0.126 ? 3.700 ? 2721 82.300 11 1 1.790 1.900 ? 9290 ? 0.107 3.6 0.107 ? 3.700 ? 2518 80.400 12 1 1.900 2.030 ? 7768 ? 0.089 7.2 0.089 ? 3.700 ? 2097 71.400 13 1 2.030 2.190 ? 9026 ? 0.080 7.7 0.080 ? 3.800 ? 2386 86.800 14 1 2.190 2.400 ? 7946 ? 0.078 8.1 0.078 ? 3.800 ? 2112 85.100 15 1 2.400 2.680 ? 6886 ? 0.076 8.1 0.076 ? 3.800 ? 1835 79.200 16 1 2.680 3.100 ? 5579 ? 0.071 5.4 0.071 ? 3.800 ? 1478 74.600 17 1 3.100 3.790 ? 5631 ? 0.063 9.3 0.063 ? 3.800 ? 1501 88.500 18 1 3.790 5.370 ? 3750 ? 0.065 8.8 0.065 ? 3.700 ? 1001 76.200 19 1 5.370 17.689 ? 2514 ? 0.084 7.1 0.084 ? 3.800 ? 659 91.700 20 1 # _refine.entry_id 4EBG _refine.ls_d_res_high 1.2000 _refine.ls_d_res_low 17.689 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 77.6800 _refine.ls_number_reflns_obs 49737 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3. PHOSPHATE (PO4) AND 1,2-ETHANEDIOL (EDO) MOLECULES FROM THE CRYSTALLIZATION/CRYOPROTECTION SOLUTION ARE MODELED. 4. THE NOMINAL RESOLUTION IS 1.35 A WITH 14065 OBSERVED REFLECTIONS BETWEEN 1.35-1.20 (73.7% COMPLETE FOR THIS SHELL) INCLUDED IN THE REFINEMENT. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1379 _refine.ls_R_factor_R_work 0.1363 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.1673 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.0000 _refine.ls_number_reflns_R_free 2509 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 19.6413 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.1200 _refine.aniso_B[2][2] 0.6600 _refine.aniso_B[3][3] -0.6200 _refine.aniso_B[1][2] -0.3200 _refine.aniso_B[1][3] 0.1100 _refine.aniso_B[2][3] 0.0700 _refine.correlation_coeff_Fo_to_Fc 0.9790 _refine.correlation_coeff_Fo_to_Fc_free 0.9730 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.0490 _refine.pdbx_overall_ESU_R_Free 0.0470 _refine.overall_SU_ML 0.0290 _refine.overall_SU_B 1.4420 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.4000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 56.940 _refine.B_iso_min 7.220 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.150 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1636 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 9 _refine_hist.number_atoms_solvent 293 _refine_hist.number_atoms_total 1938 _refine_hist.d_res_high 1.2000 _refine_hist.d_res_low 17.689 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 1854 0.017 0.022 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 1334 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2511 1.581 1.971 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 3324 0.899 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 246 5.312 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 101 31.761 26.436 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 420 13.459 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 6 16.000 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 262 0.107 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 2052 0.008 0.020 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 334 0.002 0.020 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 1059 2.806 3.000 ? ? 'X-RAY DIFFRACTION' r_mcbond_other 425 1.924 3.000 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 1749 3.868 5.000 ? ? 'X-RAY DIFFRACTION' r_scbond_it 795 5.000 8.000 ? ? 'X-RAY DIFFRACTION' r_scangle_it 735 7.223 11.000 ? ? 'X-RAY DIFFRACTION' r_rigid_bond_restr 3188 2.125 3.000 ? ? 'X-RAY DIFFRACTION' r_sphericity_free 294 8.431 3.000 ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded 3138 4.785 3.000 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.2000 _refine_ls_shell.d_res_low 1.2310 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 66.2100 _refine_ls_shell.number_reflns_R_work 2965 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2440 _refine_ls_shell.R_factor_R_free 0.2880 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 168 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 3133 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.title 'Crystal structure of a DUF4467 family protein (SAV0303) from Staphylococcus aureus subsp. aureus Mu50 at 1.35 A resolution' _struct.entry_id 4EBG _struct.pdbx_model_type_details ? _struct.pdbx_model_details ? _struct.pdbx_CASP_flag Y # _struct_keywords.text ;secreted protein, PF14729 family, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, UNKNOWN FUNCTION ; _struct_keywords.pdbx_keywords 'UNKNOWN FUNCTION' _struct_keywords.entry_id 4EBG # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? # _struct_biol.id 1 _struct_biol.details 'CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A DIMER AS THE SIGNIFICANT OLIGOMERIZATION STATE.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 TYR A 2 ? GLN A 24 ? TYR A 25 GLN A 47 1 ? 23 HELX_P HELX_P2 2 LYS A 32 ? ASP A 35 ? LYS A 55 ASP A 58 5 ? 4 HELX_P HELX_P3 3 LYS A 42 ? GLY A 44 ? LYS A 65 GLY A 67 5 ? 3 HELX_P HELX_P4 4 ASP A 79 ? HIS A 87 ? ASP A 102 HIS A 110 1 ? 9 HELX_P HELX_P5 5 TYR B 2 ? GLN B 24 ? TYR B 25 GLN B 47 1 ? 23 HELX_P HELX_P6 6 LYS B 32 ? ASP B 35 ? LYS B 55 ASP B 58 5 ? 4 HELX_P HELX_P7 7 LYS B 42 ? GLY B 44 ? LYS B 65 GLY B 67 5 ? 3 HELX_P HELX_P8 8 ASP B 79 ? HIS B 87 ? ASP B 102 HIS B 110 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLN 15 C ? ? ? 1_555 A MSE 16 N ? ? A GLN 38 A MSE 39 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale2 covale both ? A MSE 16 C ? ? ? 1_555 A ASN 17 N ? ? A MSE 39 A ASN 40 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale3 covale both ? A LYS 59 C ? ? ? 1_555 A MSE 60 N ? ? A LYS 82 A MSE 83 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale4 covale both ? A MSE 60 C ? ? ? 1_555 A TYR 61 N ? ? A MSE 83 A TYR 84 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale5 covale both ? A TYR 83 C ? ? ? 1_555 A MSE 84 N ? ? A TYR 106 A MSE 107 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale6 covale both ? A MSE 84 C ? ? ? 1_555 A LYS 85 N ? ? A MSE 107 A LYS 108 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale7 covale both ? B GLN 15 C ? ? ? 1_555 B MSE 16 N ? ? B GLN 38 B MSE 39 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale8 covale both ? B MSE 16 C ? ? ? 1_555 B ASN 17 N ? ? B MSE 39 B ASN 40 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale9 covale both ? B LYS 59 C ? ? ? 1_555 B MSE 60 N ? ? B LYS 82 B MSE 83 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale10 covale both ? B MSE 60 C ? ? ? 1_555 B TYR 61 N ? ? B MSE 83 B TYR 84 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale11 covale both ? B TYR 83 C ? ? ? 1_555 B MSE 84 N ? ? B TYR 106 B MSE 107 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale12 covale both ? B MSE 84 C ? ? ? 1_555 B LYS 85 N ? ? B MSE 107 B LYS 108 1_555 ? ? ? ? ? ? ? 1.309 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 71 ? ILE A 74 ? LYS A 94 ILE A 97 A 2 TYR A 61 ? LYS A 68 ? TYR A 84 LYS A 91 A 3 VAL A 46 ? ILE A 51 ? VAL A 69 ILE A 74 A 4 ASN A 37 ? TYR A 41 ? ASN A 60 TYR A 64 A 5 TYR A 91 ? GLU A 94 ? TYR A 114 GLU A 117 B 1 LYS B 71 ? ILE B 74 ? LYS B 94 ILE B 97 B 2 MSE B 60 ? LYS B 68 ? MSE B 83 LYS B 91 B 3 VAL B 46 ? GLN B 52 ? VAL B 69 GLN B 75 B 4 ASN B 37 ? TYR B 41 ? ASN B 60 TYR B 64 B 5 TYR B 91 ? GLU B 94 ? TYR B 114 GLU B 117 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLU A 73 ? O GLU A 96 N GLU A 66 ? N GLU A 89 A 2 3 O TYR A 65 ? O TYR A 88 N ILE A 47 ? N ILE A 70 A 3 4 O VAL A 46 ? O VAL A 69 N TYR A 41 ? N TYR A 64 A 4 5 N THR A 38 ? N THR A 61 O ASP A 93 ? O ASP A 116 B 1 2 O GLU B 73 ? O GLU B 96 N GLU B 66 ? N GLU B 89 B 2 3 O TYR B 65 ? O TYR B 88 N ILE B 47 ? N ILE B 70 B 3 4 O VAL B 46 ? O VAL B 69 N TYR B 41 ? N TYR B 64 B 4 5 N THR B 38 ? N THR B 61 O ASP B 93 ? O ASP B 116 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A EDO 201 ? 7 'BINDING SITE FOR RESIDUE EDO A 201' AC2 Software B PO4 200 ? 10 'BINDING SITE FOR RESIDUE PO4 B 200' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 GLY A 1 ? GLY A 0 . ? 1_555 ? 2 AC1 7 TYR A 2 ? TYR A 25 . ? 1_555 ? 3 AC1 7 GLN A 3 ? GLN A 26 . ? 1_555 ? 4 AC1 7 TYR A 91 ? TYR A 114 . ? 1_555 ? 5 AC1 7 ASP B 43 ? ASP B 66 . ? 1_466 ? 6 AC1 7 GLU B 58 ? GLU B 81 . ? 1_556 ? 7 AC1 7 HOH F . ? HOH B 422 . ? 1_556 ? 8 AC2 10 LYS B 28 ? LYS B 51 . ? 1_555 ? 9 AC2 10 LYS B 32 ? LYS B 55 . ? 1_555 ? 10 AC2 10 TYR B 83 ? TYR B 106 . ? 1_455 ? 11 AC2 10 HOH F . ? HOH B 313 . ? 1_555 ? 12 AC2 10 HOH F . ? HOH B 318 . ? 1_455 ? 13 AC2 10 HOH F . ? HOH B 333 . ? 1_555 ? 14 AC2 10 HOH F . ? HOH B 334 . ? 1_455 ? 15 AC2 10 HOH F . ? HOH B 362 . ? 1_455 ? 16 AC2 10 HOH F . ? HOH B 385 . ? 1_555 ? 17 AC2 10 HOH F . ? HOH B 412 . ? 1_455 ? # _atom_sites.entry_id 4EBG _atom_sites.fract_transf_matrix[1][1] 0.031013 _atom_sites.fract_transf_matrix[1][2] -0.010316 _atom_sites.fract_transf_matrix[1][3] -0.005524 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.030061 _atom_sites.fract_transf_matrix[2][3] -0.000387 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020302 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 0 GLY GLY A . n A 1 2 TYR 2 25 25 TYR TYR A . n A 1 3 GLN 3 26 26 GLN GLN A . n A 1 4 LYS 4 27 27 LYS LYS A . n A 1 5 ASP 5 28 28 ASP ASP A . n A 1 6 ILE 6 29 29 ILE ILE A . n A 1 7 ASP 7 30 30 ASP ASP A . n A 1 8 LYS 8 31 31 LYS LYS A . n A 1 9 VAL 9 32 32 VAL VAL A . n A 1 10 TYR 10 33 33 TYR TYR A . n A 1 11 LYS 11 34 34 LYS LYS A . n A 1 12 GLU 12 35 35 GLU GLU A . n A 1 13 GLN 13 36 36 GLN GLN A . n A 1 14 ASN 14 37 37 ASN ASN A . n A 1 15 GLN 15 38 38 GLN GLN A . n A 1 16 MSE 16 39 39 MSE MSE A . n A 1 17 ASN 17 40 40 ASN ASN A . n A 1 18 LYS 18 41 41 LYS LYS A . n A 1 19 ILE 19 42 42 ILE ILE A . n A 1 20 ALA 20 43 43 ALA ALA A . n A 1 21 SER 21 44 44 SER SER A . n A 1 22 LYS 22 45 45 LYS LYS A . n A 1 23 VAL 23 46 46 VAL VAL A . n A 1 24 GLN 24 47 47 GLN GLN A . n A 1 25 ASN 25 48 48 ASN ASN A . n A 1 26 THR 26 49 49 THR THR A . n A 1 27 ILE 27 50 50 ILE ILE A . n A 1 28 LYS 28 51 51 LYS LYS A . n A 1 29 THR 29 52 52 THR THR A . n A 1 30 ASP 30 53 53 ASP ASP A . n A 1 31 ILE 31 54 54 ILE ILE A . n A 1 32 LYS 32 55 55 LYS LYS A . n A 1 33 GLN 33 56 56 GLN GLN A . n A 1 34 GLU 34 57 57 GLU GLU A . n A 1 35 ASP 35 58 58 ASP ASP A . n A 1 36 SER 36 59 59 SER SER A . n A 1 37 ASN 37 60 60 ASN ASN A . n A 1 38 THR 38 61 61 THR THR A . n A 1 39 HIS 39 62 62 HIS HIS A . n A 1 40 VAL 40 63 63 VAL VAL A . n A 1 41 TYR 41 64 64 TYR TYR A . n A 1 42 LYS 42 65 65 LYS LYS A . n A 1 43 ASP 43 66 66 ASP ASP A . n A 1 44 GLY 44 67 67 GLY GLY A . n A 1 45 LYS 45 68 68 LYS LYS A . n A 1 46 VAL 46 69 69 VAL VAL A . n A 1 47 ILE 47 70 70 ILE ILE A . n A 1 48 VAL 48 71 71 VAL VAL A . n A 1 49 ILE 49 72 72 ILE ILE A . n A 1 50 GLY 50 73 73 GLY GLY A . n A 1 51 ILE 51 74 74 ILE ILE A . n A 1 52 GLN 52 75 75 GLN GLN A . n A 1 53 LEU 53 76 76 LEU LEU A . n A 1 54 TYR 54 77 77 TYR TYR A . n A 1 55 LYS 55 78 78 LYS LYS A . n A 1 56 ASP 56 79 79 ASP ASP A . n A 1 57 ARG 57 80 80 ARG ARG A . n A 1 58 GLU 58 81 81 GLU GLU A . n A 1 59 LYS 59 82 82 LYS LYS A . n A 1 60 MSE 60 83 83 MSE MSE A . n A 1 61 TYR 61 84 84 TYR TYR A . n A 1 62 TYR 62 85 85 TYR TYR A . n A 1 63 PHE 63 86 86 PHE PHE A . n A 1 64 ALA 64 87 87 ALA ALA A . n A 1 65 TYR 65 88 88 TYR TYR A . n A 1 66 GLU 66 89 89 GLU GLU A . n A 1 67 ILE 67 90 90 ILE ILE A . n A 1 68 LYS 68 91 91 LYS LYS A . n A 1 69 ASP 69 92 92 ASP ASP A . n A 1 70 GLY 70 93 93 GLY GLY A . n A 1 71 LYS 71 94 94 LYS LYS A . n A 1 72 ALA 72 95 95 ALA ALA A . n A 1 73 GLU 73 96 96 GLU GLU A . n A 1 74 ILE 74 97 97 ILE ILE A . n A 1 75 ASN 75 98 98 ASN ASN A . n A 1 76 ARG 76 99 99 ARG ARG A . n A 1 77 GLU 77 100 100 GLU GLU A . n A 1 78 ILE 78 101 101 ILE ILE A . n A 1 79 ASP 79 102 102 ASP ASP A . n A 1 80 PRO 80 103 103 PRO PRO A . n A 1 81 ILE 81 104 104 ILE ILE A . n A 1 82 LYS 82 105 105 LYS LYS A . n A 1 83 TYR 83 106 106 TYR TYR A . n A 1 84 MSE 84 107 107 MSE MSE A . n A 1 85 LYS 85 108 108 LYS LYS A . n A 1 86 ASP 86 109 109 ASP ASP A . n A 1 87 HIS 87 110 110 HIS HIS A . n A 1 88 LYS 88 111 111 LYS LYS A . n A 1 89 ALA 89 112 112 ALA ALA A . n A 1 90 ASP 90 113 113 ASP ASP A . n A 1 91 TYR 91 114 114 TYR TYR A . n A 1 92 GLU 92 115 115 GLU GLU A . n A 1 93 ASP 93 116 116 ASP ASP A . n A 1 94 GLU 94 117 117 GLU GLU A . n A 1 95 ASN 95 118 118 ASN ASN A . n A 1 96 VAL 96 119 119 VAL VAL A . n A 1 97 GLU 97 120 120 GLU GLU A . n A 1 98 VAL 98 121 ? ? ? A . n A 1 99 GLU 99 122 ? ? ? A . n A 1 100 LYS 100 123 ? ? ? A . n A 1 101 ASP 101 124 ? ? ? A . n B 1 1 GLY 1 0 0 GLY GLY B . n B 1 2 TYR 2 25 25 TYR TYR B . n B 1 3 GLN 3 26 26 GLN GLN B . n B 1 4 LYS 4 27 27 LYS LYS B . n B 1 5 ASP 5 28 28 ASP ASP B . n B 1 6 ILE 6 29 29 ILE ILE B . n B 1 7 ASP 7 30 30 ASP ASP B . n B 1 8 LYS 8 31 31 LYS LYS B . n B 1 9 VAL 9 32 32 VAL VAL B . n B 1 10 TYR 10 33 33 TYR TYR B . n B 1 11 LYS 11 34 34 LYS LYS B . n B 1 12 GLU 12 35 35 GLU GLU B . n B 1 13 GLN 13 36 36 GLN GLN B . n B 1 14 ASN 14 37 37 ASN ASN B . n B 1 15 GLN 15 38 38 GLN GLN B . n B 1 16 MSE 16 39 39 MSE MSE B . n B 1 17 ASN 17 40 40 ASN ASN B . n B 1 18 LYS 18 41 41 LYS LYS B . n B 1 19 ILE 19 42 42 ILE ILE B . n B 1 20 ALA 20 43 43 ALA ALA B . n B 1 21 SER 21 44 44 SER SER B . n B 1 22 LYS 22 45 45 LYS LYS B . n B 1 23 VAL 23 46 46 VAL VAL B . n B 1 24 GLN 24 47 47 GLN GLN B . n B 1 25 ASN 25 48 48 ASN ASN B . n B 1 26 THR 26 49 49 THR THR B . n B 1 27 ILE 27 50 50 ILE ILE B . n B 1 28 LYS 28 51 51 LYS LYS B . n B 1 29 THR 29 52 52 THR THR B . n B 1 30 ASP 30 53 53 ASP ASP B . n B 1 31 ILE 31 54 54 ILE ILE B . n B 1 32 LYS 32 55 55 LYS LYS B . n B 1 33 GLN 33 56 56 GLN GLN B . n B 1 34 GLU 34 57 57 GLU GLU B . n B 1 35 ASP 35 58 58 ASP ASP B . n B 1 36 SER 36 59 59 SER SER B . n B 1 37 ASN 37 60 60 ASN ASN B . n B 1 38 THR 38 61 61 THR THR B . n B 1 39 HIS 39 62 62 HIS HIS B . n B 1 40 VAL 40 63 63 VAL VAL B . n B 1 41 TYR 41 64 64 TYR TYR B . n B 1 42 LYS 42 65 65 LYS LYS B . n B 1 43 ASP 43 66 66 ASP ASP B . n B 1 44 GLY 44 67 67 GLY GLY B . n B 1 45 LYS 45 68 68 LYS LYS B . n B 1 46 VAL 46 69 69 VAL VAL B . n B 1 47 ILE 47 70 70 ILE ILE B . n B 1 48 VAL 48 71 71 VAL VAL B . n B 1 49 ILE 49 72 72 ILE ILE B . n B 1 50 GLY 50 73 73 GLY GLY B . n B 1 51 ILE 51 74 74 ILE ILE B . n B 1 52 GLN 52 75 75 GLN GLN B . n B 1 53 LEU 53 76 76 LEU LEU B . n B 1 54 TYR 54 77 77 TYR TYR B . n B 1 55 LYS 55 78 78 LYS LYS B . n B 1 56 ASP 56 79 79 ASP ASP B . n B 1 57 ARG 57 80 80 ARG ARG B . n B 1 58 GLU 58 81 81 GLU GLU B . n B 1 59 LYS 59 82 82 LYS LYS B . n B 1 60 MSE 60 83 83 MSE MSE B . n B 1 61 TYR 61 84 84 TYR TYR B . n B 1 62 TYR 62 85 85 TYR TYR B . n B 1 63 PHE 63 86 86 PHE PHE B . n B 1 64 ALA 64 87 87 ALA ALA B . n B 1 65 TYR 65 88 88 TYR TYR B . n B 1 66 GLU 66 89 89 GLU GLU B . n B 1 67 ILE 67 90 90 ILE ILE B . n B 1 68 LYS 68 91 91 LYS LYS B . n B 1 69 ASP 69 92 92 ASP ASP B . n B 1 70 GLY 70 93 93 GLY GLY B . n B 1 71 LYS 71 94 94 LYS LYS B . n B 1 72 ALA 72 95 95 ALA ALA B . n B 1 73 GLU 73 96 96 GLU GLU B . n B 1 74 ILE 74 97 97 ILE ILE B . n B 1 75 ASN 75 98 98 ASN ASN B . n B 1 76 ARG 76 99 99 ARG ARG B . n B 1 77 GLU 77 100 100 GLU GLU B . n B 1 78 ILE 78 101 101 ILE ILE B . n B 1 79 ASP 79 102 102 ASP ASP B . n B 1 80 PRO 80 103 103 PRO PRO B . n B 1 81 ILE 81 104 104 ILE ILE B . n B 1 82 LYS 82 105 105 LYS LYS B . n B 1 83 TYR 83 106 106 TYR TYR B . n B 1 84 MSE 84 107 107 MSE MSE B . n B 1 85 LYS 85 108 108 LYS LYS B . n B 1 86 ASP 86 109 109 ASP ASP B . n B 1 87 HIS 87 110 110 HIS HIS B . n B 1 88 LYS 88 111 111 LYS LYS B . n B 1 89 ALA 89 112 112 ALA ALA B . n B 1 90 ASP 90 113 113 ASP ASP B . n B 1 91 TYR 91 114 114 TYR TYR B . n B 1 92 GLU 92 115 115 GLU GLU B . n B 1 93 ASP 93 116 116 ASP ASP B . n B 1 94 GLU 94 117 117 GLU GLU B . n B 1 95 ASN 95 118 118 ASN ASN B . n B 1 96 VAL 96 119 119 VAL VAL B . n B 1 97 GLU 97 120 120 GLU GLU B . n B 1 98 VAL 98 121 121 VAL VAL B . n B 1 99 GLU 99 122 122 GLU GLU B . n B 1 100 LYS 100 123 ? ? ? B . n B 1 101 ASP 101 124 ? ? ? B . n # _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO 1 201 201 EDO EDO A . D 3 PO4 1 200 200 PO4 PO4 B . E 4 HOH 1 301 206 HOH HOH A . E 4 HOH 2 302 208 HOH HOH A . E 4 HOH 3 303 209 HOH HOH A . E 4 HOH 4 304 211 HOH HOH A . E 4 HOH 5 305 215 HOH HOH A . E 4 HOH 6 306 217 HOH HOH A . E 4 HOH 7 307 219 HOH HOH A . E 4 HOH 8 308 222 HOH HOH A . E 4 HOH 9 309 224 HOH HOH A . E 4 HOH 10 310 227 HOH HOH A . E 4 HOH 11 311 228 HOH HOH A . E 4 HOH 12 312 229 HOH HOH A . E 4 HOH 13 313 230 HOH HOH A . E 4 HOH 14 314 231 HOH HOH A . E 4 HOH 15 315 233 HOH HOH A . E 4 HOH 16 316 234 HOH HOH A . E 4 HOH 17 317 236 HOH HOH A . E 4 HOH 18 318 237 HOH HOH A . E 4 HOH 19 319 241 HOH HOH A . E 4 HOH 20 320 252 HOH HOH A . E 4 HOH 21 321 253 HOH HOH A . E 4 HOH 22 322 256 HOH HOH A . E 4 HOH 23 323 257 HOH HOH A . E 4 HOH 24 324 258 HOH HOH A . E 4 HOH 25 325 260 HOH HOH A . E 4 HOH 26 326 261 HOH HOH A . E 4 HOH 27 327 263 HOH HOH A . E 4 HOH 28 328 264 HOH HOH A . E 4 HOH 29 329 266 HOH HOH A . E 4 HOH 30 330 271 HOH HOH A . E 4 HOH 31 331 274 HOH HOH A . E 4 HOH 32 332 275 HOH HOH A . E 4 HOH 33 333 276 HOH HOH A . E 4 HOH 34 334 277 HOH HOH A . E 4 HOH 35 335 278 HOH HOH A . E 4 HOH 36 336 280 HOH HOH A . E 4 HOH 37 337 281 HOH HOH A . E 4 HOH 38 338 282 HOH HOH A . E 4 HOH 39 339 285 HOH HOH A . E 4 HOH 40 340 286 HOH HOH A . E 4 HOH 41 341 287 HOH HOH A . E 4 HOH 42 342 288 HOH HOH A . E 4 HOH 43 343 290 HOH HOH A . E 4 HOH 44 344 291 HOH HOH A . E 4 HOH 45 345 295 HOH HOH A . E 4 HOH 46 346 299 HOH HOH A . E 4 HOH 47 347 300 HOH HOH A . E 4 HOH 48 348 301 HOH HOH A . E 4 HOH 49 349 305 HOH HOH A . E 4 HOH 50 350 308 HOH HOH A . E 4 HOH 51 351 310 HOH HOH A . E 4 HOH 52 352 312 HOH HOH A . E 4 HOH 53 353 313 HOH HOH A . E 4 HOH 54 354 314 HOH HOH A . E 4 HOH 55 355 315 HOH HOH A . E 4 HOH 56 356 316 HOH HOH A . E 4 HOH 57 357 317 HOH HOH A . E 4 HOH 58 358 319 HOH HOH A . E 4 HOH 59 359 320 HOH HOH A . E 4 HOH 60 360 327 HOH HOH A . E 4 HOH 61 361 329 HOH HOH A . E 4 HOH 62 362 331 HOH HOH A . E 4 HOH 63 363 333 HOH HOH A . E 4 HOH 64 364 334 HOH HOH A . E 4 HOH 65 365 343 HOH HOH A . E 4 HOH 66 366 344 HOH HOH A . E 4 HOH 67 367 348 HOH HOH A . E 4 HOH 68 368 349 HOH HOH A . E 4 HOH 69 369 351 HOH HOH A . E 4 HOH 70 370 353 HOH HOH A . E 4 HOH 71 371 355 HOH HOH A . E 4 HOH 72 372 356 HOH HOH A . E 4 HOH 73 373 358 HOH HOH A . E 4 HOH 74 374 359 HOH HOH A . E 4 HOH 75 375 362 HOH HOH A . E 4 HOH 76 376 365 HOH HOH A . E 4 HOH 77 377 367 HOH HOH A . E 4 HOH 78 378 368 HOH HOH A . E 4 HOH 79 379 371 HOH HOH A . E 4 HOH 80 380 372 HOH HOH A . E 4 HOH 81 381 373 HOH HOH A . E 4 HOH 82 382 374 HOH HOH A . E 4 HOH 83 383 380 HOH HOH A . E 4 HOH 84 384 385 HOH HOH A . E 4 HOH 85 385 386 HOH HOH A . E 4 HOH 86 386 390 HOH HOH A . E 4 HOH 87 387 391 HOH HOH A . E 4 HOH 88 388 393 HOH HOH A . E 4 HOH 89 389 396 HOH HOH A . E 4 HOH 90 390 399 HOH HOH A . E 4 HOH 91 391 401 HOH HOH A . E 4 HOH 92 392 402 HOH HOH A . E 4 HOH 93 393 405 HOH HOH A . E 4 HOH 94 394 409 HOH HOH A . E 4 HOH 95 395 413 HOH HOH A . E 4 HOH 96 396 414 HOH HOH A . E 4 HOH 97 397 415 HOH HOH A . E 4 HOH 98 398 424 HOH HOH A . E 4 HOH 99 399 433 HOH HOH A . E 4 HOH 100 400 434 HOH HOH A . E 4 HOH 101 401 435 HOH HOH A . E 4 HOH 102 402 439 HOH HOH A . E 4 HOH 103 403 441 HOH HOH A . E 4 HOH 104 404 448 HOH HOH A . E 4 HOH 105 405 450 HOH HOH A . E 4 HOH 106 406 451 HOH HOH A . E 4 HOH 107 407 452 HOH HOH A . E 4 HOH 108 408 457 HOH HOH A . E 4 HOH 109 409 463 HOH HOH A . E 4 HOH 110 410 464 HOH HOH A . E 4 HOH 111 411 465 HOH HOH A . E 4 HOH 112 412 466 HOH HOH A . E 4 HOH 113 413 467 HOH HOH A . E 4 HOH 114 414 468 HOH HOH A . E 4 HOH 115 415 474 HOH HOH A . E 4 HOH 116 416 475 HOH HOH A . E 4 HOH 117 417 482 HOH HOH A . E 4 HOH 118 418 483 HOH HOH A . E 4 HOH 119 419 484 HOH HOH A . E 4 HOH 120 420 485 HOH HOH A . E 4 HOH 121 421 486 HOH HOH A . E 4 HOH 122 422 487 HOH HOH A . E 4 HOH 123 423 489 HOH HOH A . E 4 HOH 124 424 490 HOH HOH A . E 4 HOH 125 425 492 HOH HOH A . E 4 HOH 126 426 494 HOH HOH A . F 4 HOH 1 301 202 HOH HOH B . F 4 HOH 2 302 203 HOH HOH B . F 4 HOH 3 303 204 HOH HOH B . F 4 HOH 4 304 205 HOH HOH B . F 4 HOH 5 305 207 HOH HOH B . F 4 HOH 6 306 210 HOH HOH B . F 4 HOH 7 307 212 HOH HOH B . F 4 HOH 8 308 213 HOH HOH B . F 4 HOH 9 309 214 HOH HOH B . F 4 HOH 10 310 216 HOH HOH B . F 4 HOH 11 311 218 HOH HOH B . F 4 HOH 12 312 220 HOH HOH B . F 4 HOH 13 313 221 HOH HOH B . F 4 HOH 14 314 223 HOH HOH B . F 4 HOH 15 315 225 HOH HOH B . F 4 HOH 16 316 226 HOH HOH B . F 4 HOH 17 317 232 HOH HOH B . F 4 HOH 18 318 235 HOH HOH B . F 4 HOH 19 319 238 HOH HOH B . F 4 HOH 20 320 239 HOH HOH B . F 4 HOH 21 321 240 HOH HOH B . F 4 HOH 22 322 242 HOH HOH B . F 4 HOH 23 323 243 HOH HOH B . F 4 HOH 24 324 244 HOH HOH B . F 4 HOH 25 325 245 HOH HOH B . F 4 HOH 26 326 246 HOH HOH B . F 4 HOH 27 327 247 HOH HOH B . F 4 HOH 28 328 248 HOH HOH B . F 4 HOH 29 329 249 HOH HOH B . F 4 HOH 30 330 250 HOH HOH B . F 4 HOH 31 331 251 HOH HOH B . F 4 HOH 32 332 254 HOH HOH B . F 4 HOH 33 333 255 HOH HOH B . F 4 HOH 34 334 259 HOH HOH B . F 4 HOH 35 335 262 HOH HOH B . F 4 HOH 36 336 265 HOH HOH B . F 4 HOH 37 337 267 HOH HOH B . F 4 HOH 38 338 268 HOH HOH B . F 4 HOH 39 339 269 HOH HOH B . F 4 HOH 40 340 270 HOH HOH B . F 4 HOH 41 341 272 HOH HOH B . F 4 HOH 42 342 273 HOH HOH B . F 4 HOH 43 343 279 HOH HOH B . F 4 HOH 44 344 283 HOH HOH B . F 4 HOH 45 345 284 HOH HOH B . F 4 HOH 46 346 289 HOH HOH B . F 4 HOH 47 347 292 HOH HOH B . F 4 HOH 48 348 293 HOH HOH B . F 4 HOH 49 349 294 HOH HOH B . F 4 HOH 50 350 296 HOH HOH B . F 4 HOH 51 351 297 HOH HOH B . F 4 HOH 52 352 298 HOH HOH B . F 4 HOH 53 353 302 HOH HOH B . F 4 HOH 54 354 303 HOH HOH B . F 4 HOH 55 355 304 HOH HOH B . F 4 HOH 56 356 306 HOH HOH B . F 4 HOH 57 357 307 HOH HOH B . F 4 HOH 58 358 309 HOH HOH B . F 4 HOH 59 359 311 HOH HOH B . F 4 HOH 60 360 318 HOH HOH B . F 4 HOH 61 361 321 HOH HOH B . F 4 HOH 62 362 322 HOH HOH B . F 4 HOH 63 363 323 HOH HOH B . F 4 HOH 64 364 324 HOH HOH B . F 4 HOH 65 365 325 HOH HOH B . F 4 HOH 66 366 326 HOH HOH B . F 4 HOH 67 367 328 HOH HOH B . F 4 HOH 68 368 330 HOH HOH B . F 4 HOH 69 369 332 HOH HOH B . F 4 HOH 70 370 335 HOH HOH B . F 4 HOH 71 371 336 HOH HOH B . F 4 HOH 72 372 337 HOH HOH B . F 4 HOH 73 373 338 HOH HOH B . F 4 HOH 74 374 339 HOH HOH B . F 4 HOH 75 375 340 HOH HOH B . F 4 HOH 76 376 341 HOH HOH B . F 4 HOH 77 377 342 HOH HOH B . F 4 HOH 78 378 345 HOH HOH B . F 4 HOH 79 379 346 HOH HOH B . F 4 HOH 80 380 347 HOH HOH B . F 4 HOH 81 381 350 HOH HOH B . F 4 HOH 82 382 352 HOH HOH B . F 4 HOH 83 383 354 HOH HOH B . F 4 HOH 84 384 357 HOH HOH B . F 4 HOH 85 385 360 HOH HOH B . F 4 HOH 86 386 361 HOH HOH B . F 4 HOH 87 387 363 HOH HOH B . F 4 HOH 88 388 364 HOH HOH B . F 4 HOH 89 389 366 HOH HOH B . F 4 HOH 90 390 369 HOH HOH B . F 4 HOH 91 391 370 HOH HOH B . F 4 HOH 92 392 375 HOH HOH B . F 4 HOH 93 393 376 HOH HOH B . F 4 HOH 94 394 377 HOH HOH B . F 4 HOH 95 395 378 HOH HOH B . F 4 HOH 96 396 379 HOH HOH B . F 4 HOH 97 397 381 HOH HOH B . F 4 HOH 98 398 382 HOH HOH B . F 4 HOH 99 399 383 HOH HOH B . F 4 HOH 100 400 384 HOH HOH B . F 4 HOH 101 401 387 HOH HOH B . F 4 HOH 102 402 388 HOH HOH B . F 4 HOH 103 403 389 HOH HOH B . F 4 HOH 104 404 392 HOH HOH B . F 4 HOH 105 405 394 HOH HOH B . F 4 HOH 106 406 395 HOH HOH B . F 4 HOH 107 407 397 HOH HOH B . F 4 HOH 108 408 398 HOH HOH B . F 4 HOH 109 409 400 HOH HOH B . F 4 HOH 110 410 403 HOH HOH B . F 4 HOH 111 411 404 HOH HOH B . F 4 HOH 112 412 406 HOH HOH B . F 4 HOH 113 413 407 HOH HOH B . F 4 HOH 114 414 408 HOH HOH B . F 4 HOH 115 415 410 HOH HOH B . F 4 HOH 116 416 411 HOH HOH B . F 4 HOH 117 417 412 HOH HOH B . F 4 HOH 118 418 416 HOH HOH B . F 4 HOH 119 419 417 HOH HOH B . F 4 HOH 120 420 418 HOH HOH B . F 4 HOH 121 421 419 HOH HOH B . F 4 HOH 122 422 420 HOH HOH B . F 4 HOH 123 423 421 HOH HOH B . F 4 HOH 124 424 422 HOH HOH B . F 4 HOH 125 425 423 HOH HOH B . F 4 HOH 126 426 425 HOH HOH B . F 4 HOH 127 427 426 HOH HOH B . F 4 HOH 128 428 427 HOH HOH B . F 4 HOH 129 429 428 HOH HOH B . F 4 HOH 130 430 429 HOH HOH B . F 4 HOH 131 431 430 HOH HOH B . F 4 HOH 132 432 431 HOH HOH B . F 4 HOH 133 433 432 HOH HOH B . F 4 HOH 134 434 436 HOH HOH B . F 4 HOH 135 435 437 HOH HOH B . F 4 HOH 136 436 438 HOH HOH B . F 4 HOH 137 437 440 HOH HOH B . F 4 HOH 138 438 442 HOH HOH B . F 4 HOH 139 439 443 HOH HOH B . F 4 HOH 140 440 444 HOH HOH B . F 4 HOH 141 441 445 HOH HOH B . F 4 HOH 142 442 446 HOH HOH B . F 4 HOH 143 443 447 HOH HOH B . F 4 HOH 144 444 449 HOH HOH B . F 4 HOH 145 445 453 HOH HOH B . F 4 HOH 146 446 454 HOH HOH B . F 4 HOH 147 447 455 HOH HOH B . F 4 HOH 148 448 456 HOH HOH B . F 4 HOH 149 449 458 HOH HOH B . F 4 HOH 150 450 459 HOH HOH B . F 4 HOH 151 451 460 HOH HOH B . F 4 HOH 152 452 461 HOH HOH B . F 4 HOH 153 453 462 HOH HOH B . F 4 HOH 154 454 469 HOH HOH B . F 4 HOH 155 455 470 HOH HOH B . F 4 HOH 156 456 471 HOH HOH B . F 4 HOH 157 457 472 HOH HOH B . F 4 HOH 158 458 473 HOH HOH B . F 4 HOH 159 459 476 HOH HOH B . F 4 HOH 160 460 477 HOH HOH B . F 4 HOH 161 461 478 HOH HOH B . F 4 HOH 162 462 479 HOH HOH B . F 4 HOH 163 463 480 HOH HOH B . F 4 HOH 164 464 481 HOH HOH B . F 4 HOH 165 465 488 HOH HOH B . F 4 HOH 166 466 491 HOH HOH B . F 4 HOH 167 467 493 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 16 A MSE 39 ? MET SELENOMETHIONINE 2 A MSE 60 A MSE 83 ? MET SELENOMETHIONINE 3 A MSE 84 A MSE 107 ? MET SELENOMETHIONINE 4 B MSE 16 B MSE 39 ? MET SELENOMETHIONINE 5 B MSE 60 B MSE 83 ? MET SELENOMETHIONINE 6 B MSE 84 B MSE 107 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1410 ? 1 MORE -13 ? 1 'SSA (A^2)' 11510 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-05-23 2 'Structure model' 1 1 2014-12-24 3 'Structure model' 1 2 2017-11-15 4 'Structure model' 1 3 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Structure summary' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' database_2 3 4 'Structure model' struct_conn 4 4 'Structure model' struct_ref_seq_dif 5 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_database_2.pdbx_DOI' 4 4 'Structure model' '_database_2.pdbx_database_accession' 5 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 4 'Structure model' '_struct_ref_seq_dif.details' 7 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 8 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 9 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _phasing.method SAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 4 SHARP . ? package 'Eric de La Fortelle' sharp-develop@globalphasing.com phasing http://www.globalphasing.com/sharp/ ? ? 5 SCALA 3.3.20 ? package 'Phil Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' ? ? ? 6 REFMAC 5.5.0110 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 7 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? # _pdbx_entry_details.entry_id 4EBG _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 25-124 OF THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CB _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 ASP _pdbx_validate_rmsd_angle.auth_seq_id_1 66 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CG _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 ASP _pdbx_validate_rmsd_angle.auth_seq_id_2 66 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 OD1 _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 ASP _pdbx_validate_rmsd_angle.auth_seq_id_3 66 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 123.93 _pdbx_validate_rmsd_angle.angle_target_value 118.30 _pdbx_validate_rmsd_angle.angle_deviation 5.63 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.90 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 120 ? CG ? A GLU 97 CG 2 1 Y 1 A GLU 120 ? CD ? A GLU 97 CD 3 1 Y 1 A GLU 120 ? OE1 ? A GLU 97 OE1 4 1 Y 1 A GLU 120 ? OE2 ? A GLU 97 OE2 5 1 Y 1 B GLU 122 ? CG ? B GLU 99 CG 6 1 Y 1 B GLU 122 ? CD ? B GLU 99 CD 7 1 Y 1 B GLU 122 ? OE1 ? B GLU 99 OE1 8 1 Y 1 B GLU 122 ? OE2 ? B GLU 99 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A VAL 121 ? A VAL 98 2 1 Y 1 A GLU 122 ? A GLU 99 3 1 Y 1 A LYS 123 ? A LYS 100 4 1 Y 1 A ASP 124 ? A ASP 101 5 1 Y 1 B LYS 123 ? B LYS 100 6 1 Y 1 B ASP 124 ? B ASP 101 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 1,2-ETHANEDIOL EDO 3 'PHOSPHATE ION' PO4 4 water HOH #