HEADER LIGASE 24-MAR-12 4EBR TITLE CRYSTAL STRUCTURE OF AUTOPHAGIC E2, ATG10 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN-LIKE-CONJUGATING ENZYME ATG10; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: AUTOPHAGY-RELATED PROTEIN 10; COMPND 5 EC: 6.3.2.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508, S288C; SOURCE 6 GENE: ATG10, APG10, YLL042C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS E2-CONJUGATING ENZYME, AUTOPHAGY, LIGASE, PROTEIN BINDING, ATG3, KEYWDS 2 ATG5, ATG7, ATG12, THIOLATION EXPDTA X-RAY DIFFRACTION AUTHOR S.B.HONG,B.W.KIM,J.H.KIM,H.K.SONG REVDAT 2 24-JUL-13 4EBR 1 JRNL REVDAT 1 03-OCT-12 4EBR 0 JRNL AUTH S.B.HONG,B.W.KIM,J.H.KIM,H.K.SONG JRNL TITL STRUCTURE OF THE AUTOPHAGIC E2 ENZYME ATG10 JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 68 1409 2012 JRNL REFN ISSN 0907-4449 JRNL PMID 22993095 JRNL DOI 10.1107/S0907444912034166 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.150 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 3 NUMBER OF REFLECTIONS : 21751 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.670 REMARK 3 FREE R VALUE TEST SET COUNT : 1886 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.8367 - 6.3285 0.96 1708 164 0.2386 0.2499 REMARK 3 2 6.3285 - 5.0328 0.99 1643 157 0.2088 0.2117 REMARK 3 3 5.0328 - 4.3994 0.98 1615 152 0.1482 0.1743 REMARK 3 4 4.3994 - 3.9985 0.97 1569 150 0.1653 0.1939 REMARK 3 5 3.9985 - 3.7126 0.96 1545 152 0.1779 0.2046 REMARK 3 6 3.7126 - 3.4941 0.95 1544 144 0.2097 0.2629 REMARK 3 7 3.4941 - 3.3194 0.93 1467 141 0.2129 0.2481 REMARK 3 8 3.3194 - 3.1752 0.94 1504 147 0.2319 0.2496 REMARK 3 9 3.1752 - 3.0531 0.96 1527 146 0.2412 0.3019 REMARK 3 10 3.0531 - 2.9478 0.98 1550 144 0.2530 0.2796 REMARK 3 11 2.9478 - 2.8558 0.96 1538 144 0.2662 0.3335 REMARK 3 12 2.8558 - 2.7742 0.86 1360 124 0.3086 0.3275 REMARK 3 13 2.7742 - 2.7012 0.82 1295 121 0.3160 0.3601 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.98 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 50.82 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.720 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.78440 REMARK 3 B22 (A**2) : 0.78440 REMARK 3 B33 (A**2) : -1.56880 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2674 REMARK 3 ANGLE : 1.418 3636 REMARK 3 CHIRALITY : 0.099 402 REMARK 3 PLANARITY : 0.007 450 REMARK 3 DIHEDRAL : 16.726 964 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ -1:31) REMARK 3 ORIGIN FOR THE GROUP (A): 66.7484 60.9172 113.8053 REMARK 3 T TENSOR REMARK 3 T11: 0.7524 T22: 0.4343 REMARK 3 T33: 0.4740 T12: -0.1329 REMARK 3 T13: 0.0855 T23: -0.1379 REMARK 3 L TENSOR REMARK 3 L11: 8.2972 L22: 6.2177 REMARK 3 L33: 6.4229 L12: -3.8139 REMARK 3 L13: 0.4800 L23: 2.0702 REMARK 3 S TENSOR REMARK 3 S11: 0.0233 S12: -0.0440 S13: 1.1589 REMARK 3 S21: -0.6132 S22: 0.5121 S23: -0.8412 REMARK 3 S31: -1.1239 S32: 0.6925 S33: -0.5242 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 32:106) REMARK 3 ORIGIN FOR THE GROUP (A): 69.1762 45.0089 108.3175 REMARK 3 T TENSOR REMARK 3 T11: 0.5072 T22: 0.5105 REMARK 3 T33: 0.3556 T12: 0.0344 REMARK 3 T13: -0.0155 T23: -0.0568 REMARK 3 L TENSOR REMARK 3 L11: 3.9434 L22: 3.7953 REMARK 3 L33: 5.1365 L12: -3.7570 REMARK 3 L13: -3.4038 L23: 3.6062 REMARK 3 S TENSOR REMARK 3 S11: 0.0363 S12: -0.0538 S13: -0.0463 REMARK 3 S21: -0.1116 S22: 0.2254 S23: -0.0919 REMARK 3 S31: 0.1123 S32: 0.7918 S33: -0.2575 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 107:118) REMARK 3 ORIGIN FOR THE GROUP (A): 61.5544 38.7830 119.4785 REMARK 3 T TENSOR REMARK 3 T11: 1.2157 T22: 1.0304 REMARK 3 T33: 1.0402 T12: 0.0436 REMARK 3 T13: -0.0332 T23: 0.2543 REMARK 3 L TENSOR REMARK 3 L11: 1.6746 L22: 0.5984 REMARK 3 L33: 0.5323 L12: -0.9461 REMARK 3 L13: -0.9330 L23: 0.4693 REMARK 3 S TENSOR REMARK 3 S11: 0.0703 S12: -1.7062 S13: -0.4172 REMARK 3 S21: 0.5579 S22: -0.4314 S23: -1.3010 REMARK 3 S31: 0.4920 S32: -0.1487 S33: 0.2537 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 119:165) REMARK 3 ORIGIN FOR THE GROUP (A): 61.7120 52.9009 118.7661 REMARK 3 T TENSOR REMARK 3 T11: 0.4129 T22: 0.4704 REMARK 3 T33: 0.3169 T12: 0.1028 REMARK 3 T13: -0.0039 T23: 0.0633 REMARK 3 L TENSOR REMARK 3 L11: 4.1940 L22: 7.7530 REMARK 3 L33: 8.9192 L12: -0.0897 REMARK 3 L13: 1.9045 L23: 5.6716 REMARK 3 S TENSOR REMARK 3 S11: -0.0218 S12: -0.5156 S13: 0.1159 REMARK 3 S21: 0.4765 S22: 0.3177 S23: 0.0563 REMARK 3 S31: -0.2252 S32: -0.3791 S33: -0.2864 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN B AND (RESSEQ -1:17) REMARK 3 ORIGIN FOR THE GROUP (A): 37.0395 42.6006 121.6993 REMARK 3 T TENSOR REMARK 3 T11: 0.4814 T22: 0.5446 REMARK 3 T33: 0.4521 T12: 0.1813 REMARK 3 T13: 0.0876 T23: -0.0181 REMARK 3 L TENSOR REMARK 3 L11: 3.9089 L22: 3.1390 REMARK 3 L33: 4.7430 L12: -2.9068 REMARK 3 L13: 1.0748 L23: 0.7934 REMARK 3 S TENSOR REMARK 3 S11: -0.2503 S12: -1.2176 S13: 0.3759 REMARK 3 S21: 1.0922 S22: 0.0686 S23: 0.9275 REMARK 3 S31: 0.4790 S32: -0.1020 S33: 0.4226 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 18:74) REMARK 3 ORIGIN FOR THE GROUP (A): 36.8940 35.6351 108.5384 REMARK 3 T TENSOR REMARK 3 T11: 0.3316 T22: 0.3602 REMARK 3 T33: 0.6085 T12: 0.1023 REMARK 3 T13: 0.0753 T23: -0.1284 REMARK 3 L TENSOR REMARK 3 L11: 5.3534 L22: 6.7760 REMARK 3 L33: 3.9116 L12: -0.0882 REMARK 3 L13: -1.0783 L23: 1.2974 REMARK 3 S TENSOR REMARK 3 S11: -0.0906 S12: 0.4659 S13: -0.6392 REMARK 3 S21: -0.0844 S22: -0.4680 S23: 0.9981 REMARK 3 S31: 0.6096 S32: -0.4534 S33: 0.4401 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 75:105) REMARK 3 ORIGIN FOR THE GROUP (A): 45.1951 34.9189 95.7244 REMARK 3 T TENSOR REMARK 3 T11: 0.4638 T22: 0.4900 REMARK 3 T33: 0.6371 T12: 0.1397 REMARK 3 T13: 0.0217 T23: -0.0695 REMARK 3 L TENSOR REMARK 3 L11: 1.4547 L22: 5.2381 REMARK 3 L33: 6.8756 L12: -2.4525 REMARK 3 L13: -1.4367 L23: 4.8107 REMARK 3 S TENSOR REMARK 3 S11: 0.3619 S12: 0.3039 S13: -0.2359 REMARK 3 S21: -0.5298 S22: 0.0375 S23: -0.0207 REMARK 3 S31: -0.2994 S32: 0.1642 S33: -0.4802 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 106:118) REMARK 3 ORIGIN FOR THE GROUP (A): 44.9710 49.9174 98.7665 REMARK 3 T TENSOR REMARK 3 T11: 1.0206 T22: 0.9618 REMARK 3 T33: 1.1202 T12: 0.1968 REMARK 3 T13: -0.0465 T23: -0.2179 REMARK 3 L TENSOR REMARK 3 L11: 0.2013 L22: 0.1034 REMARK 3 L33: 2.3304 L12: -0.0921 REMARK 3 L13: -0.4345 L23: 0.4770 REMARK 3 S TENSOR REMARK 3 S11: 0.3321 S12: 1.6806 S13: 0.4826 REMARK 3 S21: -1.3565 S22: -1.2013 S23: -0.3515 REMARK 3 S31: 0.4556 S32: -0.8308 S33: 1.4387 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 119:137) REMARK 3 ORIGIN FOR THE GROUP (A): 47.2124 42.6096 107.7213 REMARK 3 T TENSOR REMARK 3 T11: 0.3867 T22: 0.4949 REMARK 3 T33: 0.4342 T12: -0.0070 REMARK 3 T13: 0.0280 T23: -0.0451 REMARK 3 L TENSOR REMARK 3 L11: 7.0420 L22: 2.7192 REMARK 3 L33: 6.4189 L12: -3.3638 REMARK 3 L13: -2.4204 L23: 3.5583 REMARK 3 S TENSOR REMARK 3 S11: -0.1481 S12: 0.0353 S13: 0.3437 REMARK 3 S21: 0.4988 S22: 0.2640 S23: -0.5541 REMARK 3 S31: 0.1081 S32: 0.4563 S33: -0.2380 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 138:165) REMARK 3 ORIGIN FOR THE GROUP (A): 33.3636 49.8118 113.2625 REMARK 3 T TENSOR REMARK 3 T11: 0.3000 T22: 0.3003 REMARK 3 T33: 0.5168 T12: 0.0763 REMARK 3 T13: 0.0400 T23: -0.0496 REMARK 3 L TENSOR REMARK 3 L11: 8.1702 L22: 6.8407 REMARK 3 L33: 8.6991 L12: -3.6846 REMARK 3 L13: -2.7900 L23: 1.4153 REMARK 3 S TENSOR REMARK 3 S11: -0.5371 S12: -0.1254 S13: 0.4338 REMARK 3 S21: 0.0382 S22: -0.1308 S23: 0.3783 REMARK 3 S31: -0.8919 S32: 0.2805 S33: 0.3253 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4EBR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-MAR-12. REMARK 100 THE RCSB ID CODE IS RCSB071419. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-NOV-09; 08-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100; NULL REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : PAL/PLS; PHOTON FACTORY REMARK 200 BEAMLINE : 4A; AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97951, 0.97966, 0.96; 1 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR; REMARK 200 DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315; ADSC QUANTUM REMARK 200 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23007 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.701 REMARK 200 RESOLUTION RANGE LOW (A) : 27.835 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 75.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM BIS-TRIS-HCL (PH 6.15), 3M NACL, REMARK 280 1MM 1,4-DIACETOXYMERCURY-2,3-DIMETOXYBUTANE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.52967 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 113.05933 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 84.79450 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 141.32417 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 28.26483 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 56.52967 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 113.05933 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 141.32417 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 84.79450 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 28.26483 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 315 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 304 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 317 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 49 REMARK 465 LYS A 50 REMARK 465 ASN A 51 REMARK 465 THR A 52 REMARK 465 GLU A 53 REMARK 465 ARG A 54 REMARK 465 ILE A 55 REMARK 465 GLU A 56 REMARK 465 ASN A 57 REMARK 465 LYS A 58 REMARK 465 ASP A 166 REMARK 465 SER A 167 REMARK 465 GLN B 49 REMARK 465 LYS B 50 REMARK 465 ASN B 51 REMARK 465 THR B 52 REMARK 465 GLU B 53 REMARK 465 ARG B 54 REMARK 465 ILE B 55 REMARK 465 GLU B 56 REMARK 465 ASN B 57 REMARK 465 LYS B 58 REMARK 465 ASP B 166 REMARK 465 SER B 167 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 134 OG SER A 136 1.57 REMARK 500 CD PRO A 99 OH TYR A 128 1.79 REMARK 500 CG PRO A 99 CE1 TYR A 128 1.80 REMARK 500 OG1 THR A 148 NH1 ARG A 152 1.89 REMARK 500 OG SER B 155 O HOH B 303 1.90 REMARK 500 CE2 PHE B 112 CD2 LEU B 114 1.96 REMARK 500 CG PRO A 99 OH TYR A 128 2.03 REMARK 500 O THR A 148 O HOH A 306 2.03 REMARK 500 OG SER B 147 O HOH B 317 2.05 REMARK 500 O LEU B 106 O GLN B 109 2.08 REMARK 500 CZ PHE B 112 CD2 LEU B 114 2.10 REMARK 500 OH TYR A 4 OD1 ASP A 36 2.13 REMARK 500 O ASP B 107 N GLN B 109 2.13 REMARK 500 CG PRO A 99 CZ TYR A 128 2.13 REMARK 500 OE1 GLN A 5 O HOH A 313 2.14 REMARK 500 O HOH A 305 O HOH A 310 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 123 43.02 34.73 REMARK 500 CYS A 133 -177.70 -171.13 REMARK 500 GLN A 142 -7.40 74.08 REMARK 500 ILE A 158 -62.10 -120.27 REMARK 500 GLN B 18 0.61 81.15 REMARK 500 ARG B 46 -62.67 -106.80 REMARK 500 ILE B 158 -65.01 -123.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN A 109 GLY A 110 -31.64 REMARK 500 THR A 148 TYR A 149 -142.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG B 201 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 137 SG REMARK 620 2 CYS B 133 SG 136.7 REMARK 620 3 ASP B 134 O 75.7 108.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG A 201 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 137 SG REMARK 620 2 ASP A 134 O 101.6 REMARK 620 3 CYS A 133 SG 151.3 80.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG B 201 DBREF 4EBR A 1 167 UNP Q07879 ATG10_YEAST 1 167 DBREF 4EBR B 1 167 UNP Q07879 ATG10_YEAST 1 167 SEQADV 4EBR GLY A -1 UNP Q07879 EXPRESSION TAG SEQADV 4EBR SER A 0 UNP Q07879 EXPRESSION TAG SEQADV 4EBR GLY B -1 UNP Q07879 EXPRESSION TAG SEQADV 4EBR SER B 0 UNP Q07879 EXPRESSION TAG SEQRES 1 A 169 GLY SER MSE ILE PRO TYR GLN GLU TRP HIS SER GLN LEU SEQRES 2 A 169 GLN SER LEU TYR ASP SER GLN ILE PHE HIS ASN TRP ALA SEQRES 3 A 169 LEU CYS GLN ASP VAL HIS LEU ASN ASP GLU LYS ASP GLY SEQRES 4 A 169 LEU LEU LEU ARG LEU ILE PRO THR ARG GLN LEU GLN LYS SEQRES 5 A 169 ASN THR GLU ARG ILE GLU ASN LYS LEU LEU ASN HIS ILE SEQRES 6 A 169 GLU LEU TYR LEU THR TYR SER LYS VAL TYR ASN GLU PRO SEQRES 7 A 169 LEU LEU LEU LEU ARG ILE TRP GLU GLU LYS SER ILE ASP SEQRES 8 A 169 GLY ILE PRO MSE THR LYS LEU MSE LEU PRO THR ASP ILE SEQRES 9 A 169 GLU SER LEU LEU ASP VAL GLN GLY LYS PHE GLN LEU GLY SEQRES 10 A 169 LEU ASP THR ILE ILE ASN LEU GLU GLY SER VAL TRP TYR SEQRES 11 A 169 SER PHE HIS PRO CYS ASP THR SER CYS ILE VAL GLY ASP SEQRES 12 A 169 GLN ALA GLU PHE MSE SER THR TYR LEU ARG ARG TRP VAL SEQRES 13 A 169 SER ILE PHE ILE PHE SER TRP LEU GLY TYR GLU ASP SER SEQRES 1 B 169 GLY SER MSE ILE PRO TYR GLN GLU TRP HIS SER GLN LEU SEQRES 2 B 169 GLN SER LEU TYR ASP SER GLN ILE PHE HIS ASN TRP ALA SEQRES 3 B 169 LEU CYS GLN ASP VAL HIS LEU ASN ASP GLU LYS ASP GLY SEQRES 4 B 169 LEU LEU LEU ARG LEU ILE PRO THR ARG GLN LEU GLN LYS SEQRES 5 B 169 ASN THR GLU ARG ILE GLU ASN LYS LEU LEU ASN HIS ILE SEQRES 6 B 169 GLU LEU TYR LEU THR TYR SER LYS VAL TYR ASN GLU PRO SEQRES 7 B 169 LEU LEU LEU LEU ARG ILE TRP GLU GLU LYS SER ILE ASP SEQRES 8 B 169 GLY ILE PRO MSE THR LYS LEU MSE LEU PRO THR ASP ILE SEQRES 9 B 169 GLU SER LEU LEU ASP VAL GLN GLY LYS PHE GLN LEU GLY SEQRES 10 B 169 LEU ASP THR ILE ILE ASN LEU GLU GLY SER VAL TRP TYR SEQRES 11 B 169 SER PHE HIS PRO CYS ASP THR SER CYS ILE VAL GLY ASP SEQRES 12 B 169 GLN ALA GLU PHE MSE SER THR TYR LEU ARG ARG TRP VAL SEQRES 13 B 169 SER ILE PHE ILE PHE SER TRP LEU GLY TYR GLU ASP SER MODRES 4EBR MSE A 1 MET SELENOMETHIONINE MODRES 4EBR MSE A 93 MET SELENOMETHIONINE MODRES 4EBR MSE A 97 MET SELENOMETHIONINE MODRES 4EBR MSE A 146 MET SELENOMETHIONINE MODRES 4EBR MSE B 1 MET SELENOMETHIONINE MODRES 4EBR MSE B 93 MET SELENOMETHIONINE MODRES 4EBR MSE B 97 MET SELENOMETHIONINE MODRES 4EBR MSE B 146 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 93 8 HET MSE A 97 8 HET MSE A 146 8 HET MSE B 1 8 HET MSE B 93 8 HET MSE B 97 8 HET MSE B 146 8 HET HG A 201 1 HET HG B 201 1 HETNAM MSE SELENOMETHIONINE HETNAM HG MERCURY (II) ION FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 HG 2(HG 2+) FORMUL 5 HOH *36(H2 O) HELIX 1 1 PRO A 3 SER A 17 1 15 HELIX 2 2 LEU A 98 ASP A 107 1 10 HELIX 3 3 ASP A 134 ILE A 138 5 5 HELIX 4 4 PHE A 145 THR A 148 5 4 HELIX 5 5 TYR A 149 ILE A 158 1 10 HELIX 6 6 ILE A 158 GLY A 163 1 6 HELIX 7 7 PRO B 3 SER B 17 1 15 HELIX 8 8 LEU B 98 VAL B 108 1 11 HELIX 9 9 ASP B 134 ILE B 138 5 5 HELIX 10 10 PHE B 145 SER B 147 5 3 HELIX 11 11 THR B 148 ILE B 158 1 11 SHEET 1 A12 CYS A 26 LEU A 31 0 SHEET 2 A12 LEU A 38 LEU A 42 -1 O LEU A 39 N HIS A 30 SHEET 3 A12 ASN A 61 SER A 70 -1 O LEU A 65 N LEU A 40 SHEET 4 A12 GLU A 75 ILE A 88 -1 O TRP A 83 N HIS A 62 SHEET 5 A12 SER A 125 SER A 129 -1 O TYR A 128 N LEU A 80 SHEET 6 A12 ASP A 117 LEU A 122 -1 N LEU A 122 O SER A 125 SHEET 7 A12 ASP B 117 LEU B 122 -1 O ILE B 119 N ILE A 119 SHEET 8 A12 SER B 125 SER B 129 -1 O TRP B 127 N ILE B 120 SHEET 9 A12 GLU B 75 ILE B 88 -1 N LEU B 80 O TYR B 128 SHEET 10 A12 ASN B 61 SER B 70 -1 N THR B 68 O LEU B 77 SHEET 11 A12 LEU B 38 LEU B 42 -1 N LEU B 38 O LEU B 67 SHEET 12 A12 CYS B 26 LEU B 31 -1 N HIS B 30 O LEU B 39 SHEET 1 B 8 ILE A 91 LEU A 96 0 SHEET 2 B 8 GLU A 75 ILE A 88 -1 N LYS A 86 O MSE A 93 SHEET 3 B 8 SER A 125 SER A 129 -1 O TYR A 128 N LEU A 80 SHEET 4 B 8 ASP A 117 LEU A 122 -1 N LEU A 122 O SER A 125 SHEET 5 B 8 ASP B 117 LEU B 122 -1 O ILE B 119 N ILE A 119 SHEET 6 B 8 SER B 125 SER B 129 -1 O TRP B 127 N ILE B 120 SHEET 7 B 8 GLU B 75 ILE B 88 -1 N LEU B 80 O TYR B 128 SHEET 8 B 8 ILE B 91 LEU B 96 -1 O MSE B 93 N LYS B 86 LINK C SER A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N ILE A 2 1555 1555 1.32 LINK C PRO A 92 N MSE A 93 1555 1555 1.34 LINK C MSE A 93 N THR A 94 1555 1555 1.33 LINK C LEU A 96 N MSE A 97 1555 1555 1.34 LINK C MSE A 97 N LEU A 98 1555 1555 1.33 LINK C PHE A 145 N MSE A 146 1555 1555 1.33 LINK C MSE A 146 N SER A 147 1555 1555 1.30 LINK C SER B 0 N MSE B 1 1555 1555 1.33 LINK C MSE B 1 N ILE B 2 1555 1555 1.32 LINK C PRO B 92 N MSE B 93 1555 1555 1.33 LINK C MSE B 93 N THR B 94 1555 1555 1.33 LINK C LEU B 96 N MSE B 97 1555 1555 1.33 LINK C MSE B 97 N LEU B 98 1555 1555 1.33 LINK C PHE B 145 N MSE B 146 1555 1555 1.32 LINK C MSE B 146 N SER B 147 1555 1555 1.33 LINK SG CYS B 137 HG HG B 201 1555 1555 2.59 LINK SG CYS A 137 HG HG A 201 1555 1555 2.61 LINK O ASP A 134 HG HG A 201 1555 1555 2.82 LINK SG CYS A 133 HG HG A 201 1555 1555 2.82 LINK SG CYS B 133 HG HG B 201 1555 1555 2.95 LINK O ASP B 134 HG HG B 201 1555 1555 3.06 CISPEP 1 GLY A 110 LYS A 111 0 -21.16 SITE 1 AC1 3 CYS A 133 ASP A 134 CYS A 137 SITE 1 AC2 3 CYS B 133 ASP B 134 CYS B 137 CRYST1 127.833 127.833 169.589 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007823 0.004516 0.000000 0.00000 SCALE2 0.000000 0.009033 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005897 0.00000