HEADER TRANSPORT PROTEIN 26-MAR-12 4EC2 TITLE CRYSTAL STRUCTURE OF TRIMERIC FRATAXIN FROM THE YEAST SACCHAROMYCES TITLE 2 CEREVISIAE, COMPLEXED WITH FERROUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: FRATAXIN HOMOLOG, MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 52-174; COMPND 5 SYNONYM: FRATAXIN HOMOLOG INTERMEDIATE FORM; COMPND 6 EC: 1.16.3.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: YFH1, YDL120W; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALPHA/BETA SANDWICH, METALLOCHAPERONE, IRON-STORAGE, TRANSPORT KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.A.G.SODERBERG,S.RAJAN,O.GAKH,G.ISAYA,S.AL-KARADAGHI REVDAT 4 13-SEP-23 4EC2 1 REMARK SEQADV REVDAT 3 07-MAR-18 4EC2 1 REMARK REVDAT 2 22-MAY-13 4EC2 1 JRNL REVDAT 1 30-JAN-13 4EC2 0 JRNL AUTH C.A.SODERBERG,S.RAJAN,A.V.SHKUMATOV,O.GAKH,S.SCHAEFER, JRNL AUTH 2 E.C.AHLGREN,D.I.SVERGUN,G.ISAYA,S.AL-KARADAGHI JRNL TITL THE MOLECULAR BASIS OF IRON-INDUCED OLIGOMERIZATION OF JRNL TITL 2 FRATAXIN AND THE ROLE OF THE FERROXIDATION REACTION IN JRNL TITL 3 OLIGOMERIZATION. JRNL REF J.BIOL.CHEM. V. 288 8156 2013 JRNL REFN ISSN 0021-9258 JRNL PMID 23344952 JRNL DOI 10.1074/JBC.M112.442285 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.A.G.SODERBERG,A.V.SHKUMATOV,S.RAJAN,O.GAKH,D.I.SVERGUN, REMARK 1 AUTH 2 G.ISAYA,S.AL-KARADAGHI REMARK 1 TITL OLIGOMERIZATION PROPENSITY AND FLEXIBILITY OF YEAST FRATAXIN REMARK 1 TITL 2 STUDIED BY X-RAY CRYSTALLOGRAPHY AND SMALL-ANGLE X-RAY REMARK 1 TITL 3 SCATTERING REMARK 1 REF J.MOL.BIOL. V. 414 783 2011 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 22051511 REMARK 1 DOI 10.1016/J.JMB.2011.10.034 REMARK 1 REFERENCE 2 REMARK 1 AUTH T.KARLBERG,U.SCHAGERLOF,O.GAKH,S.PARK,U.RYDE,M.LINDAHL, REMARK 1 AUTH 2 K.LEATH,E.GARMAN,G.ISAYA,S.AL-KARADAGHI REMARK 1 TITL THE STRUCTURES OF FRATAXIN OLIGOMERS REVEAL THE MECHANISM REMARK 1 TITL 2 FOR THE DELIVERY AND DETOXIFICATION OF IRON REMARK 1 REF STRUCTURE V. 14 1535 2006 REMARK 1 REFN ISSN 0969-2126 REMARK 1 PMID 17027502 REMARK 1 DOI 10.1016/J.STR.2006.08.010 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.2_869) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.290 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 11245 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.260 REMARK 3 R VALUE (WORKING SET) : 0.254 REMARK 3 FREE R VALUE : 0.311 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.760 REMARK 3 FREE R VALUE TEST SET COUNT : 1097 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.8162 - 5.9793 0.98 1267 161 0.2086 0.2315 REMARK 3 2 5.9793 - 4.7569 0.99 1282 153 0.2008 0.2761 REMARK 3 3 4.7569 - 4.1588 0.99 1315 147 0.2128 0.2654 REMARK 3 4 4.1588 - 3.7800 0.94 1235 114 0.2913 0.3752 REMARK 3 5 3.7800 - 3.5099 0.95 1215 140 0.3416 0.4964 REMARK 3 6 3.5099 - 3.3034 0.95 1245 140 0.3805 0.5102 REMARK 3 7 3.3034 - 3.1383 1.00 1339 110 0.3441 0.4149 REMARK 3 8 3.1383 - 3.0020 0.95 1250 132 0.3487 0.4135 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.29 REMARK 3 B_SOL : 59.03 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 1.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 39.050 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 903 REMARK 3 ANGLE : 1.271 1233 REMARK 3 CHIRALITY : 0.088 142 REMARK 3 PLANARITY : 0.008 162 REMARK 3 DIHEDRAL : 19.949 339 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4EC2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-APR-12. REMARK 100 THE DEPOSITION ID IS D_1000071429. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-SEP-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I911-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.038 REMARK 200 MONOCHROMATOR : SI (111) DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11254 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 3.320 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.12 REMARK 200 R MERGE FOR SHELL (I) : 0.63200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.760 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2FQL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 77.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.7 M (NH4)2SO4, 0.2 M LI2SO4, 4 % REMARK 280 GAMMA-BUTYROLACTONE, 0.1 M TRIS PH 8.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y,-Z REMARK 290 16555 X,-Y,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z,-X,-Y+1/2 REMARK 290 19555 -Z,-X+1/2,Y REMARK 290 20555 -Z+1/2,X,-Y REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z,-X REMARK 290 23555 Y,-Z,-X+1/2 REMARK 290 24555 -Y,-Z+1/2,X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 60.78500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.78500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 60.78500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.78500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 60.78500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 60.78500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 60.78500 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 60.78500 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 60.78500 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 60.78500 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 60.78500 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 60.78500 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 60.78500 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 60.78500 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 60.78500 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 60.78500 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 60.78500 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 60.78500 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 60.78500 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 60.78500 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 60.78500 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 60.78500 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 60.78500 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 60.78500 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 60.78500 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 60.78500 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 60.78500 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 60.78500 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 60.78500 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 60.78500 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 60.78500 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 60.78500 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 60.78500 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 60.78500 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 60.78500 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 60.78500 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 -1.000000 -60.78500 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 -60.78500 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 60.78500 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 -60.78500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 52 REMARK 465 GLU A 53 REMARK 465 SER A 54 REMARK 465 SER A 55 REMARK 465 THR A 56 REMARK 465 ASP A 57 REMARK 465 GLY A 58 REMARK 465 GLN A 59 REMARK 465 VAL A 60 REMARK 465 SER A 173 REMARK 465 GLN A 174 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ASP A 97 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 62 87.60 -69.91 REMARK 500 PRO A 69 76.89 -68.58 REMARK 500 LEU A 88 -39.66 -136.16 REMARK 500 ALA A 94 25.65 -76.15 REMARK 500 ASP A 97 29.26 -153.95 REMARK 500 SER A 105 -72.48 -66.71 REMARK 500 HIS A 106 69.41 -160.41 REMARK 500 PRO A 126 -176.26 -57.75 REMARK 500 ASN A 127 31.32 70.49 REMARK 500 LYS A 128 129.88 90.55 REMARK 500 LEU A 145 -94.36 -102.61 REMARK 500 ASN A 146 47.79 -105.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 126 ASN A 127 -135.35 REMARK 500 LYS A 128 GLN A 129 -141.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3OER RELATED DB: PDB REMARK 900 RELATED ID: 3OEQ RELATED DB: PDB REMARK 900 RELATED ID: 2FQL RELATED DB: PDB DBREF 4EC2 A 52 174 UNP Q07540 FRDA_YEAST 52 174 SEQADV 4EC2 ALA A 73 UNP Q07540 TYR 73 ENGINEERED MUTATION SEQRES 1 A 123 VAL GLU SER SER THR ASP GLY GLN VAL VAL PRO GLN GLU SEQRES 2 A 123 VAL LEU ASN LEU PRO LEU GLU LYS ALA HIS GLU GLU ALA SEQRES 3 A 123 ASP ASP TYR LEU ASP HIS LEU LEU ASP SER LEU GLU GLU SEQRES 4 A 123 LEU SER GLU ALA HIS PRO ASP CYS ILE PRO ASP VAL GLU SEQRES 5 A 123 LEU SER HIS GLY VAL MET THR LEU GLU ILE PRO ALA PHE SEQRES 6 A 123 GLY THR TYR VAL ILE ASN LYS GLN PRO PRO ASN LYS GLN SEQRES 7 A 123 ILE TRP LEU ALA SER PRO LEU SER GLY PRO ASN ARG PHE SEQRES 8 A 123 ASP LEU LEU ASN GLY GLU TRP VAL SER LEU ARG ASN GLY SEQRES 9 A 123 THR LYS LEU THR ASP ILE LEU THR GLU GLU VAL GLU LYS SEQRES 10 A 123 ALA ILE SER LYS SER GLN HET FE2 A 201 1 HETNAM FE2 FE (II) ION FORMUL 2 FE2 FE 2+ HELIX 1 1 GLN A 63 LEU A 68 1 6 HELIX 2 2 GLU A 76 GLU A 93 1 18 HELIX 3 2 LEU A 158 SER A 171 1 14 SHEET 1 A 7 PRO A 100 SER A 105 0 SHEET 2 A 7 VAL A 108 ILE A 113 -1 O THR A 110 N GLU A 103 SHEET 3 A 7 GLY A 117 GLN A 124 -1 O TYR A 119 N LEU A 111 SHEET 4 A 7 GLN A 129 SER A 134 -1 O TRP A 131 N ASN A 122 SHEET 5 A 7 GLY A 138 ASP A 143 -1 O GLY A 138 N SER A 134 SHEET 6 A 7 TRP A 149 LEU A 152 -1 O VAL A 150 N ASP A 143 SHEET 7 A 7 GLY A 155 LYS A 157 -1 O THR A 156 N SER A 151 CRYST1 121.570 121.570 121.570 90.00 90.00 90.00 I 21 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008226 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008226 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008226 0.00000