HEADER HYDROLASE 29-MAR-12 4EFA TITLE CRYSTAL STRUCTURE OF THE HETEROTRIMERIC EGCHEAD PERIPHERAL STALK TITLE 2 COMPLEX OF THE YEAST VACUOLAR ATPASE - SECOND CONFORMATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: V-TYPE PROTON ATPASE SUBUNIT C; COMPND 3 CHAIN: C; COMPND 4 FRAGMENT: UNP RESIDUES 158-277; COMPND 5 SYNONYM: V-ATPASE SUBUNIT C, V-ATPASE 42 KDA SUBUNIT, VACUOLAR PROTON COMPND 6 PUMP SUBUNIT C; COMPND 7 EC: 3.6.3.14; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: V-TYPE PROTON ATPASE SUBUNIT G; COMPND 11 CHAIN: G; COMPND 12 SYNONYM: V-ATPASE SUBUNIT G, V-ATPASE 13 KDA SUBUNIT, VACUOLAR PROTON COMPND 13 PUMP SUBUNIT G; COMPND 14 EC: 3.6.3.14; COMPND 15 ENGINEERED: YES; COMPND 16 MOL_ID: 3; COMPND 17 MOLECULE: V-TYPE PROTON ATPASE SUBUNIT E; COMPND 18 CHAIN: E; COMPND 19 SYNONYM: V-ATPASE SUBUNIT E, V-ATPASE 27 KDA SUBUNIT, VACUOLAR PROTON COMPND 20 PUMP SUBUNIT E; COMPND 21 EC: 3.6.3.14; COMPND 22 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: VAT3, VATC, VMA5, YKL080W, YKL410; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: ROSETTA2; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMALC2E; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 14 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 15 ORGANISM_TAXID: 559292; SOURCE 16 STRAIN: ATCC 204508 / S288C; SOURCE 17 GENE: VMA10, YHR039BC, YHR039C-A, YHR039C-B; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 20 EXPRESSION_SYSTEM_STRAIN: ROSETTA2; SOURCE 21 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 22 EXPRESSION_SYSTEM_PLASMID: PMALC2E; SOURCE 23 MOL_ID: 3; SOURCE 24 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 25 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 26 ORGANISM_TAXID: 559292; SOURCE 27 STRAIN: ATCC 204508 / S288C; SOURCE 28 GENE: O6241, VAT5, VMA4, YOR332W; SOURCE 29 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 30 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 31 EXPRESSION_SYSTEM_STRAIN: ROSETTA2; SOURCE 32 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 33 EXPRESSION_SYSTEM_PLASMID: PMALC2E KEYWDS HETEROTRIMER, PERIPHERAL STALK, VACUOLAR ATPASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.A.OOT,L.S.HUANG,E.A.BERRY,S.WILKENS REVDAT 4 13-SEP-23 4EFA 1 REMARK SEQADV REVDAT 3 15-NOV-17 4EFA 1 REMARK REVDAT 2 28-NOV-12 4EFA 1 JRNL REVDAT 1 10-OCT-12 4EFA 0 JRNL AUTH R.A.OOT,L.S.HUANG,E.A.BERRY,S.WILKENS JRNL TITL CRYSTAL STRUCTURE OF THE YEAST VACUOLAR ATPASE JRNL TITL 2 HETEROTRIMERIC EGC(HEAD) PERIPHERAL STALK COMPLEX. JRNL REF STRUCTURE V. 20 1881 2012 JRNL REFN ISSN 0969-2126 JRNL PMID 23000382 JRNL DOI 10.1016/J.STR.2012.08.020 REMARK 2 REMARK 2 RESOLUTION. 2.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1012 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 14187 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1418 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.6587 - 6.0605 0.99 1374 153 0.2060 0.2473 REMARK 3 2 6.0605 - 4.8133 1.00 1312 146 0.2168 0.2527 REMARK 3 3 4.8133 - 4.2057 1.00 1293 144 0.1829 0.2367 REMARK 3 4 4.2057 - 3.8216 0.99 1273 140 0.2223 0.2897 REMARK 3 5 3.8216 - 3.5479 0.99 1255 139 0.2341 0.2799 REMARK 3 6 3.5479 - 3.3388 1.00 1257 140 0.2665 0.2964 REMARK 3 7 3.3388 - 3.1717 1.00 1276 141 0.2755 0.3397 REMARK 3 8 3.1717 - 3.0337 1.00 1240 138 0.2942 0.3592 REMARK 3 9 3.0337 - 2.9169 1.00 1280 142 0.2997 0.3434 REMARK 3 10 2.9169 - 2.8163 0.97 1209 135 0.3358 0.3715 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.73 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 58.29 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 93.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.39560 REMARK 3 B22 (A**2) : 1.48840 REMARK 3 B33 (A**2) : 4.90710 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3433 REMARK 3 ANGLE : 0.499 4606 REMARK 3 CHIRALITY : 0.035 535 REMARK 3 PLANARITY : 0.002 588 REMARK 3 DIHEDRAL : 7.851 1353 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 158:172 ) REMARK 3 ORIGIN FOR THE GROUP (A):-107.0730 112.0629 156.9290 REMARK 3 T TENSOR REMARK 3 T11: 0.3554 T22: 0.8351 REMARK 3 T33: 0.5409 T12: -0.1373 REMARK 3 T13: 0.0647 T23: -0.2151 REMARK 3 L TENSOR REMARK 3 L11: 5.6385 L22: 6.2730 REMARK 3 L33: 2.2264 L12: -0.0814 REMARK 3 L13: 0.1737 L23: 2.9575 REMARK 3 S TENSOR REMARK 3 S11: 0.0731 S12: 0.0776 S13: 0.8719 REMARK 3 S21: -0.5809 S22: 0.4371 S23: -0.3993 REMARK 3 S31: -0.5403 S32: 0.7007 S33: -0.5151 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 173:222 ) REMARK 3 ORIGIN FOR THE GROUP (A): -94.3856 93.1442 158.5256 REMARK 3 T TENSOR REMARK 3 T11: 0.4371 T22: 0.6996 REMARK 3 T33: 0.3726 T12: 0.0171 REMARK 3 T13: 0.0006 T23: -0.1608 REMARK 3 L TENSOR REMARK 3 L11: 4.1943 L22: 5.6774 REMARK 3 L33: 2.3424 L12: -1.3203 REMARK 3 L13: -2.1885 L23: 0.7618 REMARK 3 S TENSOR REMARK 3 S11: 0.4795 S12: 0.2443 S13: -0.1795 REMARK 3 S21: -0.4895 S22: -0.2378 S23: -0.3886 REMARK 3 S31: 0.0522 S32: 0.4799 S33: -0.2159 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 223:230 ) REMARK 3 ORIGIN FOR THE GROUP (A): -97.0799 103.9559 161.5372 REMARK 3 T TENSOR REMARK 3 T11: 0.4800 T22: 0.2648 REMARK 3 T33: 0.2761 T12: -0.1973 REMARK 3 T13: 0.0825 T23: -0.0602 REMARK 3 L TENSOR REMARK 3 L11: 3.5113 L22: 3.7836 REMARK 3 L33: 9.5146 L12: -0.6646 REMARK 3 L13: -2.3911 L23: 2.2417 REMARK 3 S TENSOR REMARK 3 S11: 0.3839 S12: -0.1022 S13: 0.0981 REMARK 3 S21: 0.2713 S22: 0.5024 S23: -0.1802 REMARK 3 S31: -0.1287 S32: 0.3088 S33: 0.6211 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 231:258 ) REMARK 3 ORIGIN FOR THE GROUP (A): -97.3643 88.4772 162.8563 REMARK 3 T TENSOR REMARK 3 T11: 0.2122 T22: 0.4095 REMARK 3 T33: 0.2632 T12: -0.0206 REMARK 3 T13: -0.0717 T23: -0.0433 REMARK 3 L TENSOR REMARK 3 L11: 7.7832 L22: 9.1847 REMARK 3 L33: 7.3755 L12: -1.1011 REMARK 3 L13: -2.2876 L23: 2.3443 REMARK 3 S TENSOR REMARK 3 S11: 0.0717 S12: -0.1257 S13: -0.5600 REMARK 3 S21: 0.2541 S22: 0.2879 S23: -0.5989 REMARK 3 S31: 0.3400 S32: 0.4446 S33: -0.2439 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 259:263 ) REMARK 3 ORIGIN FOR THE GROUP (A):-103.4058 90.2892 151.7954 REMARK 3 T TENSOR REMARK 3 T11: 0.5827 T22: 1.1500 REMARK 3 T33: 0.8406 T12: -0.1489 REMARK 3 T13: -0.4127 T23: -0.0937 REMARK 3 L TENSOR REMARK 3 L11: 7.5533 L22: 7.4716 REMARK 3 L33: 2.0001 L12: 0.4285 REMARK 3 L13: -1.7282 L23: -2.3388 REMARK 3 S TENSOR REMARK 3 S11: 0.1042 S12: 1.5409 S13: -0.4933 REMARK 3 S21: -0.9538 S22: 0.1075 S23: 0.8413 REMARK 3 S31: 0.9183 S32: -0.4280 S33: -0.6601 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'G' AND (RESID 2:60 ) REMARK 3 ORIGIN FOR THE GROUP (A): -84.1601 58.6900 131.2477 REMARK 3 T TENSOR REMARK 3 T11: 0.4539 T22: 0.7731 REMARK 3 T33: 0.5782 T12: -0.0241 REMARK 3 T13: 0.0369 T23: -0.2115 REMARK 3 L TENSOR REMARK 3 L11: 1.0615 L22: 5.2892 REMARK 3 L33: 8.2400 L12: 0.0220 REMARK 3 L13: 0.2709 L23: 6.6030 REMARK 3 S TENSOR REMARK 3 S11: 0.1349 S12: -0.1573 S13: -0.1098 REMARK 3 S21: -0.8182 S22: 0.2542 S23: -0.7028 REMARK 3 S31: -0.3325 S32: 0.5039 S33: -0.2340 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'G' AND (RESID 61:105 ) REMARK 3 ORIGIN FOR THE GROUP (A): -83.2142 -17.0127 100.5418 REMARK 3 T TENSOR REMARK 3 T11: 0.7908 T22: 0.9980 REMARK 3 T33: 1.0301 T12: 0.3043 REMARK 3 T13: -0.3607 T23: -0.2211 REMARK 3 L TENSOR REMARK 3 L11: 0.1105 L22: 0.5885 REMARK 3 L33: 1.9453 L12: 0.0637 REMARK 3 L13: -0.0657 L23: -1.0670 REMARK 3 S TENSOR REMARK 3 S11: -0.0095 S12: 0.2170 S13: 0.0675 REMARK 3 S21: 0.5201 S22: 0.8007 S23: -0.6018 REMARK 3 S31: 0.8498 S32: 1.5896 S33: -0.8549 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 2:111 ) REMARK 3 ORIGIN FOR THE GROUP (A): -87.1315 36.4746 125.9122 REMARK 3 T TENSOR REMARK 3 T11: 0.9287 T22: 0.8053 REMARK 3 T33: 0.5954 T12: 0.1679 REMARK 3 T13: -0.2771 T23: -0.1941 REMARK 3 L TENSOR REMARK 3 L11: 0.5045 L22: 4.6746 REMARK 3 L33: 2.8341 L12: 0.0336 REMARK 3 L13: -0.0457 L23: 3.6814 REMARK 3 S TENSOR REMARK 3 S11: 0.1862 S12: 0.1253 S13: -0.2027 REMARK 3 S21: 1.5945 S22: 0.2772 S23: -0.3842 REMARK 3 S31: 1.2303 S32: 0.2963 S33: -0.4395 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 112:226 ) REMARK 3 ORIGIN FOR THE GROUP (A): -96.1882 -28.5888 75.1828 REMARK 3 T TENSOR REMARK 3 T11: 0.9400 T22: 0.7459 REMARK 3 T33: 0.7934 T12: 0.3108 REMARK 3 T13: -0.1676 T23: -0.2184 REMARK 3 L TENSOR REMARK 3 L11: 2.1327 L22: 1.2121 REMARK 3 L33: 3.4620 L12: 1.3832 REMARK 3 L13: -0.0134 L23: -0.8981 REMARK 3 S TENSOR REMARK 3 S11: 0.0404 S12: 0.7469 S13: -0.3634 REMARK 3 S21: -0.2145 S22: 0.5276 S23: -0.5372 REMARK 3 S31: 0.7745 S32: 0.4626 S33: -0.5575 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4EFA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-APR-12. REMARK 100 THE DEPOSITION ID IS D_1000071544. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14187 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.90 REMARK 200 R MERGE (I) : 0.13200 REMARK 200 R SYM (I) : 0.13200 REMARK 200 FOR THE DATA SET : 35.0890 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.10 REMARK 200 R MERGE FOR SHELL (I) : 0.00000 REMARK 200 R SYM FOR SHELL (I) : 0.00000 REMARK 200 FOR SHELL : 2.306 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.0 REMARK 200 STARTING MODEL: PDB ENTRY 4DL0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M LITHIUM SULFATE, 0.1 M MES, 20% REMARK 280 PEG MME 2000, 0.15 M GLYCINE , PH 6, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.82400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.44550 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.82400 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 58.44550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -113.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, G, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY C 148 REMARK 465 PRO C 149 REMARK 465 LYS C 150 REMARK 465 VAL C 151 REMARK 465 PRO C 152 REMARK 465 GLU C 153 REMARK 465 SER C 154 REMARK 465 GLY C 155 REMARK 465 SER C 156 REMARK 465 MET C 157 REMARK 465 GLU C 264 REMARK 465 GLU C 265 REMARK 465 LEU C 266 REMARK 465 ILE C 267 REMARK 465 ASP C 268 REMARK 465 GLN C 269 REMARK 465 LEU C 270 REMARK 465 LYS C 271 REMARK 465 LYS C 272 REMARK 465 GLU C 273 REMARK 465 HIS C 274 REMARK 465 ASP C 275 REMARK 465 SER C 276 REMARK 465 ALA C 277 REMARK 465 GLY G -4 REMARK 465 PRO G -3 REMARK 465 LYS G -2 REMARK 465 VAL G -1 REMARK 465 PRO G 0 REMARK 465 MET G 1 REMARK 465 ALA G 62 REMARK 465 GLY G 63 REMARK 465 GLY G 64 REMARK 465 VAL G 65 REMARK 465 GLY G 66 REMARK 465 GLU G 67 REMARK 465 LEU G 68 REMARK 465 GLU G 69 REMARK 465 LYS G 70 REMARK 465 SER G 106 REMARK 465 ALA G 107 REMARK 465 GLU G 108 REMARK 465 VAL G 109 REMARK 465 HIS G 110 REMARK 465 ILE G 111 REMARK 465 ASN G 112 REMARK 465 ALA G 113 REMARK 465 LEU G 114 REMARK 465 MET E 1 REMARK 465 LYS E 227 REMARK 465 THR E 228 REMARK 465 ARG E 229 REMARK 465 LYS E 230 REMARK 465 PHE E 231 REMARK 465 PHE E 232 REMARK 465 ASP E 233 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN C 187 73.79 54.23 REMARK 500 SER C 209 -11.34 -142.75 REMARK 500 ASP C 228 -155.20 -116.72 REMARK 500 VAL G 76 -32.09 -131.38 REMARK 500 ASN E 112 40.75 -97.24 REMARK 500 MET E 152 27.59 -140.48 REMARK 500 ALA E 167 88.56 -154.46 REMARK 500 GLU E 170 -71.65 -85.66 REMARK 500 LEU E 220 31.21 -93.99 REMARK 500 GLU E 221 -41.28 -130.11 REMARK 500 TYR E 223 -153.36 -129.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 G 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 G 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 G 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DL0 RELATED DB: PDB REMARK 900 SAME PROTEIN COMPLEX, DIFFERENT CONFORMATION DBREF 4EFA C 158 277 UNP P31412 VATC_YEAST 158 277 DBREF 4EFA G 1 114 UNP P48836 VATG_YEAST 1 114 DBREF 4EFA E 1 233 UNP P22203 VATE_YEAST 1 233 SEQADV 4EFA GLY C 148 UNP P31412 EXPRESSION TAG SEQADV 4EFA PRO C 149 UNP P31412 EXPRESSION TAG SEQADV 4EFA LYS C 150 UNP P31412 EXPRESSION TAG SEQADV 4EFA VAL C 151 UNP P31412 EXPRESSION TAG SEQADV 4EFA PRO C 152 UNP P31412 EXPRESSION TAG SEQADV 4EFA GLU C 153 UNP P31412 EXPRESSION TAG SEQADV 4EFA SER C 154 UNP P31412 EXPRESSION TAG SEQADV 4EFA GLY C 155 UNP P31412 EXPRESSION TAG SEQADV 4EFA SER C 156 UNP P31412 EXPRESSION TAG SEQADV 4EFA MET C 157 UNP P31412 EXPRESSION TAG SEQADV 4EFA GLY G -4 UNP P48836 EXPRESSION TAG SEQADV 4EFA PRO G -3 UNP P48836 EXPRESSION TAG SEQADV 4EFA LYS G -2 UNP P48836 EXPRESSION TAG SEQADV 4EFA VAL G -1 UNP P48836 EXPRESSION TAG SEQADV 4EFA PRO G 0 UNP P48836 EXPRESSION TAG SEQRES 1 C 130 GLY PRO LYS VAL PRO GLU SER GLY SER MET ASN LEU ALA SEQRES 2 C 130 ALA ALA GLU ARG LYS LYS THR GLY ASP LEU SER VAL ARG SEQRES 3 C 130 SER LEU HIS ASP ILE VAL LYS PRO GLU ASP PHE VAL LEU SEQRES 4 C 130 ASN SER GLU HIS LEU THR THR VAL LEU VAL ALA VAL PRO SEQRES 5 C 130 LYS SER LEU LYS SER ASP PHE GLU LYS SER TYR GLU THR SEQRES 6 C 130 LEU SER LYS ASN VAL VAL PRO ALA SER ALA SER VAL ILE SEQRES 7 C 130 ALA GLU ASP ALA GLU TYR VAL LEU PHE ASN VAL HIS LEU SEQRES 8 C 130 PHE LYS LYS ASN VAL GLN GLU PHE THR THR ALA ALA ARG SEQRES 9 C 130 GLU LYS LYS PHE ILE PRO ARG GLU PHE ASN TYR SER GLU SEQRES 10 C 130 GLU LEU ILE ASP GLN LEU LYS LYS GLU HIS ASP SER ALA SEQRES 1 G 119 GLY PRO LYS VAL PRO MET SER GLN LYS ASN GLY ILE ALA SEQRES 2 G 119 THR LEU LEU GLN ALA GLU LYS GLU ALA HIS GLU ILE VAL SEQRES 3 G 119 SER LYS ALA ARG LYS TYR ARG GLN ASP LYS LEU LYS GLN SEQRES 4 G 119 ALA LYS THR ASP ALA ALA LYS GLU ILE ASP SER TYR LYS SEQRES 5 G 119 ILE GLN LYS ASP LYS GLU LEU LYS GLU PHE GLU GLN LYS SEQRES 6 G 119 ASN ALA GLY GLY VAL GLY GLU LEU GLU LYS LYS ALA GLU SEQRES 7 G 119 ALA GLY VAL GLN GLY GLU LEU ALA GLU ILE LYS LYS ILE SEQRES 8 G 119 ALA GLU LYS LYS LYS ASP ASP VAL VAL LYS ILE LEU ILE SEQRES 9 G 119 GLU THR VAL ILE LYS PRO SER ALA GLU VAL HIS ILE ASN SEQRES 10 G 119 ALA LEU SEQRES 1 E 233 MET SER SER ALA ILE THR ALA LEU THR PRO ASN GLN VAL SEQRES 2 E 233 ASN ASP GLU LEU ASN LYS MET GLN ALA PHE ILE ARG LYS SEQRES 3 E 233 GLU ALA GLU GLU LYS ALA LYS GLU ILE GLN LEU LYS ALA SEQRES 4 E 233 ASP GLN GLU TYR GLU ILE GLU LYS THR ASN ILE VAL ARG SEQRES 5 E 233 ASN GLU THR ASN ASN ILE ASP GLY ASN PHE LYS SER LYS SEQRES 6 E 233 LEU LYS LYS ALA MET LEU SER GLN GLN ILE THR LYS SER SEQRES 7 E 233 THR ILE ALA ASN LYS MET ARG LEU LYS VAL LEU SER ALA SEQRES 8 E 233 ARG GLU GLN SER LEU ASP GLY ILE PHE GLU GLU THR LYS SEQRES 9 E 233 GLU LYS LEU SER GLY ILE ALA ASN ASN ARG ASP GLU TYR SEQRES 10 E 233 LYS PRO ILE LEU GLN SER LEU ILE VAL GLU ALA LEU LEU SEQRES 11 E 233 LYS LEU LEU GLU PRO LYS ALA ILE VAL LYS ALA LEU GLU SEQRES 12 E 233 ARG ASP VAL ASP LEU ILE GLU SER MET LYS ASP ASP ILE SEQRES 13 E 233 MET ARG GLU TYR GLY GLU LYS ALA GLN ARG ALA PRO LEU SEQRES 14 E 233 GLU GLU ILE VAL ILE SER ASN ASP TYR LEU ASN LYS ASP SEQRES 15 E 233 LEU VAL SER GLY GLY VAL VAL VAL SER ASN ALA SER ASP SEQRES 16 E 233 LYS ILE GLU ILE ASN ASN THR LEU GLU GLU ARG LEU LYS SEQRES 17 E 233 LEU LEU SER GLU GLU ALA LEU PRO ALA ILE ARG LEU GLU SEQRES 18 E 233 LEU TYR GLY PRO SER LYS THR ARG LYS PHE PHE ASP HET SO4 C 301 5 HET SO4 G 201 5 HET SO4 G 202 5 HET SO4 G 203 5 HETNAM SO4 SULFATE ION FORMUL 4 SO4 4(O4 S 2-) FORMUL 8 HOH *24(H2 O) HELIX 1 1 LYS C 180 PHE C 184 5 5 HELIX 2 2 LEU C 202 LYS C 208 1 7 HELIX 3 3 SER C 209 LEU C 213 5 5 HELIX 4 4 ASN C 242 LYS C 253 1 12 HELIX 5 5 GLN G 3 ASN G 61 1 59 HELIX 6 6 VAL G 76 LYS G 90 1 15 HELIX 7 7 LYS G 90 ILE G 103 1 14 HELIX 8 8 THR E 9 ASN E 112 1 104 HELIX 9 9 ASN E 113 LEU E 133 1 21 HELIX 10 10 ASP E 145 GLU E 150 1 6 HELIX 11 11 MET E 152 ALA E 164 1 13 HELIX 12 12 LEU E 203 TYR E 223 1 21 SHEET 1 A 4 SER C 223 GLU C 227 0 SHEET 2 A 4 TYR C 231 PHE C 239 -1 O LEU C 233 N ILE C 225 SHEET 3 A 4 LEU C 191 PRO C 199 -1 N VAL C 196 O PHE C 234 SHEET 4 A 4 ILE C 256 ARG C 258 -1 O ILE C 256 N ALA C 197 SHEET 1 B 4 GLU E 171 ILE E 174 0 SHEET 2 B 4 LYS E 136 ALA E 141 1 N VAL E 139 O VAL E 173 SHEET 3 B 4 GLY E 187 SER E 191 -1 O SER E 191 N ILE E 138 SHEET 4 B 4 GLU E 198 THR E 202 -1 O ILE E 199 N VAL E 190 SITE 1 AC1 3 LEU C 175 ARG C 258 GLU C 259 SITE 1 AC2 1 ARG G 25 SITE 1 AC3 3 LYS E 31 ARG G 25 ARG G 28 SITE 1 AC4 3 HIS G 18 SER G 22 ARG G 25 CRYST1 51.537 93.648 116.891 90.00 90.00 90.00 P 2 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019404 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010678 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008555 0.00000