HEADER TRANSCRIPTION/DNA 02-APR-12 4EGY TITLE CRYSTAL STRUCTURE OF ARAR(DBD) IN COMPLEX WITH OPERATOR ORA1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARABINOSE METABOLISM TRANSCRIPTIONAL REPRESSOR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN, UNP RESIDUES 1-68; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 5'-D(*TP*AP*AP*TP*AP*TP*TP*TP*GP*TP*AP*CP*GP*AP*AP*CP*AP*AP COMPND 8 *TP*TP*T)-3'; COMPND 9 CHAIN: T; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: 5'-D(*AP*AP*AP*AP*TP*TP*GP*TP*TP*CP*GP*TP*AP*CP*AP*AP*AP*TP COMPND 13 *AP*TP*T)-3'; COMPND 14 CHAIN: U; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: ARAC, ARAR, BSU33970, YVBS; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: C41DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PDJN1; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES KEYWDS WINGED HELIX TURN HELIX, TRANSCRIPTION FACTOR, TRANSCRIPTION-DNA KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.JAIN,D.T.NAIR REVDAT 2 20-MAR-24 4EGY 1 REMARK SEQADV LINK REVDAT 1 06-FEB-13 4EGY 0 JRNL AUTH D.JAIN,D.T.NAIR JRNL TITL SPACING BETWEEN CORE RECOGNITION MOTIFS DETERMINES RELATIVE JRNL TITL 2 ORIENTATION OF ARAR MONOMERS ON BIPARTITE OPERATORS. JRNL REF NUCLEIC ACIDS RES. V. 41 639 2013 JRNL REFN ISSN 0305-1048 JRNL PMID 23109551 JRNL DOI 10.1093/NAR/GKS962 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 15834 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.020 REMARK 3 FREE R VALUE TEST SET COUNT : 953 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.9633 - 4.3995 0.97 2202 143 0.1941 0.2372 REMARK 3 2 4.3995 - 3.4930 0.97 2133 141 0.1943 0.2190 REMARK 3 3 3.4930 - 3.0517 0.96 2118 100 0.2229 0.2416 REMARK 3 4 3.0517 - 2.7728 0.97 2113 158 0.2518 0.2899 REMARK 3 5 2.7728 - 2.5741 0.97 2121 131 0.2506 0.3570 REMARK 3 6 2.5741 - 2.4224 0.97 2100 132 0.2811 0.3602 REMARK 3 7 2.4224 - 2.3011 0.96 2094 148 0.3482 0.3842 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.90 REMARK 3 SHRINKAGE RADIUS : 0.61 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 61.12 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 17.79000 REMARK 3 B22 (A**2) : -9.65150 REMARK 3 B33 (A**2) : -8.13850 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 15.31690 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2169 REMARK 3 ANGLE : 1.272 3104 REMARK 3 CHIRALITY : 0.061 345 REMARK 3 PLANARITY : 0.006 255 REMARK 3 DIHEDRAL : 24.522 863 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A' AND (RESSEQ -12:3) REMARK 3 ORIGIN FOR THE GROUP (A): 12.2668 37.7971 13.4281 REMARK 3 T TENSOR REMARK 3 T11: 0.5264 T22: 0.1930 REMARK 3 T33: 0.6266 T12: -0.1018 REMARK 3 T13: 0.0452 T23: 0.0605 REMARK 3 L TENSOR REMARK 3 L11: 0.1842 L22: 0.4090 REMARK 3 L33: 0.0824 L12: 0.0255 REMARK 3 L13: 0.1190 L23: -0.0220 REMARK 3 S TENSOR REMARK 3 S11: 0.1120 S12: -0.1201 S13: -0.1005 REMARK 3 S21: 0.2248 S22: -0.0313 S23: 0.0065 REMARK 3 S31: 0.0342 S32: -0.0711 S33: -0.1054 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 4:68) REMARK 3 ORIGIN FOR THE GROUP (A): 14.2302 29.1516 -2.5563 REMARK 3 T TENSOR REMARK 3 T11: 0.2003 T22: 0.2084 REMARK 3 T33: 0.3406 T12: 0.0372 REMARK 3 T13: -0.0204 T23: 0.0290 REMARK 3 L TENSOR REMARK 3 L11: 0.4409 L22: 0.4292 REMARK 3 L33: 0.8634 L12: 0.4310 REMARK 3 L13: -0.2306 L23: -0.2497 REMARK 3 S TENSOR REMARK 3 S11: 0.2770 S12: 0.0500 S13: 0.0214 REMARK 3 S21: 0.0099 S22: -0.1505 S23: 0.1936 REMARK 3 S31: -0.2581 S32: 0.0100 S33: -0.0027 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN B AND (RESSEQ -1:3) REMARK 3 ORIGIN FOR THE GROUP (A): 16.8911 0.9324 -3.8820 REMARK 3 T TENSOR REMARK 3 T11: 0.4830 T22: 0.2623 REMARK 3 T33: 0.4664 T12: -0.0287 REMARK 3 T13: 0.0653 T23: 0.0175 REMARK 3 L TENSOR REMARK 3 L11: 0.4648 L22: 0.1534 REMARK 3 L33: 0.1306 L12: 0.1749 REMARK 3 L13: 0.1529 L23: 0.0835 REMARK 3 S TENSOR REMARK 3 S11: -0.1361 S12: -0.1094 S13: 0.4505 REMARK 3 S21: -0.0823 S22: -0.1099 S23: -0.0385 REMARK 3 S31: 0.0960 S32: 0.0423 S33: 0.0500 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 4:15) REMARK 3 ORIGIN FOR THE GROUP (A): 9.7308 3.9534 6.4562 REMARK 3 T TENSOR REMARK 3 T11: 0.5181 T22: 0.2376 REMARK 3 T33: 0.3230 T12: -0.1324 REMARK 3 T13: -0.0693 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 0.3416 L22: 0.1980 REMARK 3 L33: 0.1474 L12: -0.0607 REMARK 3 L13: 0.0048 L23: -0.1663 REMARK 3 S TENSOR REMARK 3 S11: 0.0377 S12: 0.2383 S13: -0.4159 REMARK 3 S21: 0.1487 S22: -0.0186 S23: -0.1045 REMARK 3 S31: 0.4261 S32: -0.1306 S33: 0.0161 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 16:29) REMARK 3 ORIGIN FOR THE GROUP (A): 0.0757 4.1865 15.2045 REMARK 3 T TENSOR REMARK 3 T11: 0.2721 T22: 0.3153 REMARK 3 T33: 0.5135 T12: -0.1131 REMARK 3 T13: 0.0224 T23: 0.0131 REMARK 3 L TENSOR REMARK 3 L11: 0.0357 L22: 0.3921 REMARK 3 L33: 0.0202 L12: 0.0422 REMARK 3 L13: 0.0221 L23: -0.0156 REMARK 3 S TENSOR REMARK 3 S11: -0.0488 S12: 0.0187 S13: -0.1930 REMARK 3 S21: 0.2153 S22: 0.0578 S23: 0.0832 REMARK 3 S31: 0.0755 S32: 0.0020 S33: 0.0914 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 30:40) REMARK 3 ORIGIN FOR THE GROUP (A): 15.6771 5.6752 16.4310 REMARK 3 T TENSOR REMARK 3 T11: 0.3871 T22: 0.1927 REMARK 3 T33: 0.2197 T12: 0.0394 REMARK 3 T13: -0.0732 T23: 0.0596 REMARK 3 L TENSOR REMARK 3 L11: 0.4104 L22: 0.3349 REMARK 3 L33: 0.4480 L12: -0.0990 REMARK 3 L13: -0.1096 L23: -0.3367 REMARK 3 S TENSOR REMARK 3 S11: 0.1641 S12: -0.1731 S13: -0.2421 REMARK 3 S21: 0.0323 S22: 0.1203 S23: 0.0468 REMARK 3 S31: 0.2709 S32: -0.0205 S33: -0.0336 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 41:53) REMARK 3 ORIGIN FOR THE GROUP (A): 11.4409 13.5046 9.3811 REMARK 3 T TENSOR REMARK 3 T11: 0.1993 T22: 0.2711 REMARK 3 T33: 0.3765 T12: -0.0110 REMARK 3 T13: -0.0260 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 1.4310 L22: 0.1829 REMARK 3 L33: 0.4396 L12: 0.1289 REMARK 3 L13: 0.2755 L23: -0.1859 REMARK 3 S TENSOR REMARK 3 S11: 0.2284 S12: -0.4433 S13: -0.0324 REMARK 3 S21: 0.0109 S22: -0.3836 S23: -0.1241 REMARK 3 S31: 0.0716 S32: -0.0333 S33: 0.1549 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 54:68) REMARK 3 ORIGIN FOR THE GROUP (A): 1.8881 13.8333 14.9209 REMARK 3 T TENSOR REMARK 3 T11: 0.1155 T22: 0.3000 REMARK 3 T33: 0.3005 T12: -0.0530 REMARK 3 T13: -0.0552 T23: -0.0831 REMARK 3 L TENSOR REMARK 3 L11: 0.1480 L22: 0.1322 REMARK 3 L33: 0.1302 L12: 0.0565 REMARK 3 L13: 0.0340 L23: 0.1254 REMARK 3 S TENSOR REMARK 3 S11: -0.0484 S12: -0.1231 S13: 0.0506 REMARK 3 S21: -0.0334 S22: -0.0921 S23: 0.1427 REMARK 3 S31: -0.0725 S32: 0.0263 S33: -0.0057 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN T AND (RESSEQ 1:5) REMARK 3 ORIGIN FOR THE GROUP (A): 9.7089 21.0176 38.9820 REMARK 3 T TENSOR REMARK 3 T11: 0.5449 T22: 0.3608 REMARK 3 T33: 0.4133 T12: 0.0141 REMARK 3 T13: 0.3026 T23: -0.0509 REMARK 3 L TENSOR REMARK 3 L11: 0.7512 L22: 1.1181 REMARK 3 L33: 0.9904 L12: -0.3348 REMARK 3 L13: 0.6700 L23: 0.3182 REMARK 3 S TENSOR REMARK 3 S11: 0.0469 S12: 0.0768 S13: 0.0672 REMARK 3 S21: 0.0254 S22: 0.4335 S23: -0.0672 REMARK 3 S31: 0.2403 S32: 0.1354 S33: 0.3092 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN T AND (RESSEQ 6:10) REMARK 3 ORIGIN FOR THE GROUP (A): 12.2771 17.9472 21.3730 REMARK 3 T TENSOR REMARK 3 T11: 0.4443 T22: 0.2945 REMARK 3 T33: 0.1826 T12: -0.0899 REMARK 3 T13: 0.0292 T23: -0.0343 REMARK 3 L TENSOR REMARK 3 L11: 1.1050 L22: 0.5083 REMARK 3 L33: 0.3805 L12: -0.0667 REMARK 3 L13: -0.4244 L23: -0.3060 REMARK 3 S TENSOR REMARK 3 S11: -0.2191 S12: -0.2317 S13: -0.0102 REMARK 3 S21: 0.6850 S22: -0.3072 S23: 0.2856 REMARK 3 S31: 0.1599 S32: -0.0471 S33: 0.0934 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN T AND (RESSEQ 11:15) REMARK 3 ORIGIN FOR THE GROUP (A): 26.5424 22.2226 9.6448 REMARK 3 T TENSOR REMARK 3 T11: 0.3121 T22: 0.3581 REMARK 3 T33: 0.2922 T12: -0.1012 REMARK 3 T13: 0.1897 T23: -0.2671 REMARK 3 L TENSOR REMARK 3 L11: 0.7597 L22: 1.5701 REMARK 3 L33: 0.7177 L12: 0.8359 REMARK 3 L13: -0.7193 L23: -0.7806 REMARK 3 S TENSOR REMARK 3 S11: -0.0354 S12: 0.2204 S13: 0.2909 REMARK 3 S21: -0.1681 S22: 0.2909 S23: 0.0142 REMARK 3 S31: -0.3450 S32: 0.1782 S33: 0.1957 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN T AND (RESSEQ 16:21) REMARK 3 ORIGIN FOR THE GROUP (A): 26.5047 14.5186 -8.4829 REMARK 3 T TENSOR REMARK 3 T11: 0.4049 T22: 0.2523 REMARK 3 T33: 0.2189 T12: 0.0338 REMARK 3 T13: -0.0735 T23: 0.0197 REMARK 3 L TENSOR REMARK 3 L11: 1.2140 L22: 0.6590 REMARK 3 L33: 0.6582 L12: 0.2532 REMARK 3 L13: -0.6198 L23: 0.3247 REMARK 3 S TENSOR REMARK 3 S11: 0.1916 S12: 0.0913 S13: 0.2805 REMARK 3 S21: -0.3029 S22: 0.4905 S23: -0.0476 REMARK 3 S31: 0.0928 S32: 0.3345 S33: -0.2274 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN U AND (RESSEQ 22:31) REMARK 3 ORIGIN FOR THE GROUP (A): 27.3662 17.5290 -5.2415 REMARK 3 T TENSOR REMARK 3 T11: 0.2887 T22: 0.3056 REMARK 3 T33: 0.1821 T12: 0.0226 REMARK 3 T13: 0.0105 T23: -0.0262 REMARK 3 L TENSOR REMARK 3 L11: 0.4880 L22: 0.6374 REMARK 3 L33: 0.2237 L12: -0.2486 REMARK 3 L13: -0.1144 L23: 0.2975 REMARK 3 S TENSOR REMARK 3 S11: 0.1747 S12: 0.2017 S13: 0.0646 REMARK 3 S21: -0.1979 S22: 0.0885 S23: 0.0373 REMARK 3 S31: -0.2559 S32: 0.1299 S33: -0.1175 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN U AND (RESSEQ 32:42) REMARK 3 ORIGIN FOR THE GROUP (A): 14.4279 19.5965 25.2660 REMARK 3 T TENSOR REMARK 3 T11: 0.5806 T22: 0.2078 REMARK 3 T33: 0.2212 T12: 0.0035 REMARK 3 T13: 0.1751 T23: -0.0404 REMARK 3 L TENSOR REMARK 3 L11: 0.3582 L22: 1.9220 REMARK 3 L33: 3.2202 L12: 0.3576 REMARK 3 L13: -0.5925 L23: -0.2417 REMARK 3 S TENSOR REMARK 3 S11: 0.1995 S12: -0.2341 S13: 0.1774 REMARK 3 S21: 0.4199 S22: 0.3153 S23: 0.5453 REMARK 3 S31: 0.8430 S32: 0.1926 S33: 0.5905 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4EGY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-APR-12. REMARK 100 THE DEPOSITION ID IS D_1000071604. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JAN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.37800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 26% PEG 8000, PH 4.2, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 69.86500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.26000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 69.86500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 21.26000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, T, U REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 MET B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 LEU B -12 REMARK 465 GLU B -11 REMARK 465 VAL B -10 REMARK 465 LEU B -9 REMARK 465 PHE B -8 REMARK 465 GLN B -7 REMARK 465 GLY B -6 REMARK 465 PRO B -5 REMARK 465 LEU B -4 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A -5 CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT T 1 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG T 13 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DC T 16 O4' - C1' - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 DT U 27 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DT U 30 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 DG U 32 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 DC U 35 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A -5 71.63 43.67 REMARK 500 GLU A -1 -111.54 53.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA U 102 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 62 O REMARK 620 2 DT T 6 O2 106.1 REMARK 620 3 HOH T 227 O 149.9 83.7 REMARK 620 4 DT U 39 O2 97.5 88.3 111.4 REMARK 620 5 DA U 40 O4' 105.6 144.6 76.7 72.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT T 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT U 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA U 102 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4EGZ RELATED DB: PDB DBREF 4EGY A 1 68 UNP P96711 ARAR_BACSU 1 68 DBREF 4EGY B 1 68 UNP P96711 ARAR_BACSU 1 68 DBREF 4EGY T 1 21 PDB 4EGY 4EGY 1 21 DBREF 4EGY U 22 42 PDB 4EGY 4EGY 22 42 SEQADV 4EGY MET A -19 UNP P96711 EXPRESSION TAG SEQADV 4EGY HIS A -18 UNP P96711 EXPRESSION TAG SEQADV 4EGY HIS A -17 UNP P96711 EXPRESSION TAG SEQADV 4EGY HIS A -16 UNP P96711 EXPRESSION TAG SEQADV 4EGY HIS A -15 UNP P96711 EXPRESSION TAG SEQADV 4EGY HIS A -14 UNP P96711 EXPRESSION TAG SEQADV 4EGY HIS A -13 UNP P96711 EXPRESSION TAG SEQADV 4EGY LEU A -12 UNP P96711 EXPRESSION TAG SEQADV 4EGY GLU A -11 UNP P96711 EXPRESSION TAG SEQADV 4EGY VAL A -10 UNP P96711 EXPRESSION TAG SEQADV 4EGY LEU A -9 UNP P96711 EXPRESSION TAG SEQADV 4EGY PHE A -8 UNP P96711 EXPRESSION TAG SEQADV 4EGY GLN A -7 UNP P96711 EXPRESSION TAG SEQADV 4EGY GLY A -6 UNP P96711 EXPRESSION TAG SEQADV 4EGY PRO A -5 UNP P96711 EXPRESSION TAG SEQADV 4EGY LEU A -4 UNP P96711 EXPRESSION TAG SEQADV 4EGY GLY A -3 UNP P96711 EXPRESSION TAG SEQADV 4EGY SER A -2 UNP P96711 EXPRESSION TAG SEQADV 4EGY GLU A -1 UNP P96711 EXPRESSION TAG SEQADV 4EGY PHE A 0 UNP P96711 EXPRESSION TAG SEQADV 4EGY MET B -19 UNP P96711 EXPRESSION TAG SEQADV 4EGY HIS B -18 UNP P96711 EXPRESSION TAG SEQADV 4EGY HIS B -17 UNP P96711 EXPRESSION TAG SEQADV 4EGY HIS B -16 UNP P96711 EXPRESSION TAG SEQADV 4EGY HIS B -15 UNP P96711 EXPRESSION TAG SEQADV 4EGY HIS B -14 UNP P96711 EXPRESSION TAG SEQADV 4EGY HIS B -13 UNP P96711 EXPRESSION TAG SEQADV 4EGY LEU B -12 UNP P96711 EXPRESSION TAG SEQADV 4EGY GLU B -11 UNP P96711 EXPRESSION TAG SEQADV 4EGY VAL B -10 UNP P96711 EXPRESSION TAG SEQADV 4EGY LEU B -9 UNP P96711 EXPRESSION TAG SEQADV 4EGY PHE B -8 UNP P96711 EXPRESSION TAG SEQADV 4EGY GLN B -7 UNP P96711 EXPRESSION TAG SEQADV 4EGY GLY B -6 UNP P96711 EXPRESSION TAG SEQADV 4EGY PRO B -5 UNP P96711 EXPRESSION TAG SEQADV 4EGY LEU B -4 UNP P96711 EXPRESSION TAG SEQADV 4EGY GLY B -3 UNP P96711 EXPRESSION TAG SEQADV 4EGY SER B -2 UNP P96711 EXPRESSION TAG SEQADV 4EGY GLU B -1 UNP P96711 EXPRESSION TAG SEQADV 4EGY PHE B 0 UNP P96711 EXPRESSION TAG SEQRES 1 A 88 MET HIS HIS HIS HIS HIS HIS LEU GLU VAL LEU PHE GLN SEQRES 2 A 88 GLY PRO LEU GLY SER GLU PHE MET LEU PRO LYS TYR ALA SEQRES 3 A 88 GLN VAL LYS GLU GLU ILE SER SER TRP ILE ASN GLN GLY SEQRES 4 A 88 LYS ILE LEU PRO ASP GLN LYS ILE PRO THR GLU ASN GLU SEQRES 5 A 88 LEU MET GLN GLN PHE GLY VAL SER ARG HIS THR ILE ARG SEQRES 6 A 88 LYS ALA ILE GLY ASP LEU VAL SER GLN GLY LEU LEU TYR SEQRES 7 A 88 SER VAL GLN GLY GLY GLY THR PHE VAL ALA SEQRES 1 B 88 MET HIS HIS HIS HIS HIS HIS LEU GLU VAL LEU PHE GLN SEQRES 2 B 88 GLY PRO LEU GLY SER GLU PHE MET LEU PRO LYS TYR ALA SEQRES 3 B 88 GLN VAL LYS GLU GLU ILE SER SER TRP ILE ASN GLN GLY SEQRES 4 B 88 LYS ILE LEU PRO ASP GLN LYS ILE PRO THR GLU ASN GLU SEQRES 5 B 88 LEU MET GLN GLN PHE GLY VAL SER ARG HIS THR ILE ARG SEQRES 6 B 88 LYS ALA ILE GLY ASP LEU VAL SER GLN GLY LEU LEU TYR SEQRES 7 B 88 SER VAL GLN GLY GLY GLY THR PHE VAL ALA SEQRES 1 T 21 DT DA DA DT DA DT DT DT DG DT DA DC DG SEQRES 2 T 21 DA DA DC DA DA DT DT DT SEQRES 1 U 21 DA DA DA DA DT DT DG DT DT DC DG DT DA SEQRES 2 U 21 DC DA DA DA DT DA DT DT HET ACT A 101 4 HET ACT T 101 4 HET ACT U 101 4 HET CA U 102 1 HETNAM ACT ACETATE ION HETNAM CA CALCIUM ION FORMUL 5 ACT 3(C2 H3 O2 1-) FORMUL 8 CA CA 2+ FORMUL 9 HOH *101(H2 O) HELIX 1 1 PRO A 3 GLN A 18 1 16 HELIX 2 2 THR A 29 GLY A 38 1 10 HELIX 3 3 SER A 40 GLY A 55 1 16 HELIX 4 4 PRO B 3 GLN B 18 1 16 HELIX 5 5 THR B 29 GLY B 38 1 10 HELIX 6 6 SER B 40 GLN B 54 1 15 SHEET 1 A 2 LEU A 57 VAL A 60 0 SHEET 2 A 2 GLY A 64 VAL A 67 -1 O PHE A 66 N TYR A 58 SHEET 1 B 2 LEU B 57 VAL B 60 0 SHEET 2 B 2 GLY B 64 VAL B 67 -1 O PHE B 66 N TYR B 58 LINK O GLY B 62 CA CA U 102 1555 1555 2.70 LINK O2 DT T 6 CA CA U 102 1555 1555 2.77 LINK O HOH T 227 CA CA U 102 1555 1555 2.89 LINK O2 DT U 39 CA CA U 102 1555 1555 2.69 LINK O4' DA U 40 CA CA U 102 1555 1555 3.02 SITE 1 AC1 2 ASN A 17 GLN B 18 SITE 1 AC2 7 GLY A 62 DT T 20 DT T 21 HOH T 221 SITE 2 AC2 7 DA U 24 DA U 25 DT U 26 SITE 1 AC3 2 DG U 32 DT U 33 SITE 1 AC4 5 GLY B 62 DT T 6 HOH T 227 DT U 39 SITE 2 AC4 5 DA U 40 CRYST1 139.730 42.520 67.580 90.00 114.43 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007157 0.000000 0.003251 0.00000 SCALE2 0.000000 0.023518 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016252 0.00000