data_4EKA # _entry.id 4EKA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4EKA RCSB RCSB071724 WWPDB D_1000071724 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4EK0 . unspecified PDB 4EKB . unspecified PDB 4EKH . unspecified PDB 4EKO . unspecified PDB 4EKT . unspecified PDB 4EL2 . unspecified PDB 4EL3 . unspecified PDB 4EL7 . unspecified PDB 4ELA . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4EKA _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-04-09 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Warkentin, M.' 1 'Badeau, R.' 2 'Hopkins, J.B.' 3 'Thorne, R.E.' 4 # _citation.id primary _citation.title 'Spatial distribution of radiation damage to crystalline proteins at 25-300 K.' _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_volume 68 _citation.page_first 1108 _citation.page_last 1117 _citation.year 2012 _citation.journal_id_ASTM ABCRE6 _citation.country DK _citation.journal_id_ISSN 0907-4449 _citation.journal_id_CSD 0766 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22948911 _citation.pdbx_database_id_DOI 10.1107/S0907444912021361 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Warkentin, M.' 1 primary 'Badeau, R.' 2 primary 'Hopkins, J.B.' 3 primary 'Thorne, R.E.' 4 # _cell.length_a 57.350 _cell.length_b 57.350 _cell.length_c 150.780 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 4EKA _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.entry_id 4EKA _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 92 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat Thaumatin-1 22243.119 1 ? ? ? ? 2 non-polymer syn 'L(+)-TARTARIC ACID' 150.087 1 ? ? ? ? 3 water nat water 18.015 178 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Thaumatin I' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;ATFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTKGGKIWARTDCYFDDSGSGICKTGDCGGLLRCKRF GRPPTTLAEFSLNQYGKDYIDISNIKGFNVPMDFSPTTRGCRGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCCT TGKCGPTEYSRFFKRLCPDAFSYVLDKPTTVTCPGSSNYRVTFCPTA ; _entity_poly.pdbx_seq_one_letter_code_can ;ATFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTKGGKIWARTDCYFDDSGSGICKTGDCGGLLRCKRF GRPPTTLAEFSLNQYGKDYIDISNIKGFNVPMDFSPTTRGCRGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCCT TGKCGPTEYSRFFKRLCPDAFSYVLDKPTTVTCPGSSNYRVTFCPTA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 THR n 1 3 PHE n 1 4 GLU n 1 5 ILE n 1 6 VAL n 1 7 ASN n 1 8 ARG n 1 9 CYS n 1 10 SER n 1 11 TYR n 1 12 THR n 1 13 VAL n 1 14 TRP n 1 15 ALA n 1 16 ALA n 1 17 ALA n 1 18 SER n 1 19 LYS n 1 20 GLY n 1 21 ASP n 1 22 ALA n 1 23 ALA n 1 24 LEU n 1 25 ASP n 1 26 ALA n 1 27 GLY n 1 28 GLY n 1 29 ARG n 1 30 GLN n 1 31 LEU n 1 32 ASN n 1 33 SER n 1 34 GLY n 1 35 GLU n 1 36 SER n 1 37 TRP n 1 38 THR n 1 39 ILE n 1 40 ASN n 1 41 VAL n 1 42 GLU n 1 43 PRO n 1 44 GLY n 1 45 THR n 1 46 LYS n 1 47 GLY n 1 48 GLY n 1 49 LYS n 1 50 ILE n 1 51 TRP n 1 52 ALA n 1 53 ARG n 1 54 THR n 1 55 ASP n 1 56 CYS n 1 57 TYR n 1 58 PHE n 1 59 ASP n 1 60 ASP n 1 61 SER n 1 62 GLY n 1 63 SER n 1 64 GLY n 1 65 ILE n 1 66 CYS n 1 67 LYS n 1 68 THR n 1 69 GLY n 1 70 ASP n 1 71 CYS n 1 72 GLY n 1 73 GLY n 1 74 LEU n 1 75 LEU n 1 76 ARG n 1 77 CYS n 1 78 LYS n 1 79 ARG n 1 80 PHE n 1 81 GLY n 1 82 ARG n 1 83 PRO n 1 84 PRO n 1 85 THR n 1 86 THR n 1 87 LEU n 1 88 ALA n 1 89 GLU n 1 90 PHE n 1 91 SER n 1 92 LEU n 1 93 ASN n 1 94 GLN n 1 95 TYR n 1 96 GLY n 1 97 LYS n 1 98 ASP n 1 99 TYR n 1 100 ILE n 1 101 ASP n 1 102 ILE n 1 103 SER n 1 104 ASN n 1 105 ILE n 1 106 LYS n 1 107 GLY n 1 108 PHE n 1 109 ASN n 1 110 VAL n 1 111 PRO n 1 112 MET n 1 113 ASP n 1 114 PHE n 1 115 SER n 1 116 PRO n 1 117 THR n 1 118 THR n 1 119 ARG n 1 120 GLY n 1 121 CYS n 1 122 ARG n 1 123 GLY n 1 124 VAL n 1 125 ARG n 1 126 CYS n 1 127 ALA n 1 128 ALA n 1 129 ASP n 1 130 ILE n 1 131 VAL n 1 132 GLY n 1 133 GLN n 1 134 CYS n 1 135 PRO n 1 136 ALA n 1 137 LYS n 1 138 LEU n 1 139 LYS n 1 140 ALA n 1 141 PRO n 1 142 GLY n 1 143 GLY n 1 144 GLY n 1 145 CYS n 1 146 ASN n 1 147 ASP n 1 148 ALA n 1 149 CYS n 1 150 THR n 1 151 VAL n 1 152 PHE n 1 153 GLN n 1 154 THR n 1 155 SER n 1 156 GLU n 1 157 TYR n 1 158 CYS n 1 159 CYS n 1 160 THR n 1 161 THR n 1 162 GLY n 1 163 LYS n 1 164 CYS n 1 165 GLY n 1 166 PRO n 1 167 THR n 1 168 GLU n 1 169 TYR n 1 170 SER n 1 171 ARG n 1 172 PHE n 1 173 PHE n 1 174 LYS n 1 175 ARG n 1 176 LEU n 1 177 CYS n 1 178 PRO n 1 179 ASP n 1 180 ALA n 1 181 PHE n 1 182 SER n 1 183 TYR n 1 184 VAL n 1 185 LEU n 1 186 ASP n 1 187 LYS n 1 188 PRO n 1 189 THR n 1 190 THR n 1 191 VAL n 1 192 THR n 1 193 CYS n 1 194 PRO n 1 195 GLY n 1 196 SER n 1 197 SER n 1 198 ASN n 1 199 TYR n 1 200 ARG n 1 201 VAL n 1 202 THR n 1 203 PHE n 1 204 CYS n 1 205 PRO n 1 206 THR n 1 207 ALA n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name katemfe _entity_src_nat.pdbx_organism_scientific 'Thaumatococcus daniellii' _entity_src_nat.pdbx_ncbi_taxonomy_id 4621 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code THM1_THADA _struct_ref.pdbx_db_accession P02883 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ATFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYFDDSGSGICKTGDCGGLLRCKRF GRPPTTLAEFSLNQYGKDYIDISNIKGFNVPMNFSPTTRGCRGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCCT TGKCGPTEYSRFFKRLCPDAFSYVLDKPTTVTCPGSSNYRVTFCPTA ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4EKA _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 207 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P02883 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 207 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 207 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4EKA LYS A 46 ? UNP P02883 ASN 46 'SEE REMARK 999' 46 1 1 4EKA ASP A 113 ? UNP P02883 ASN 113 'SEE REMARK 999' 113 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TLA non-polymer . 'L(+)-TARTARIC ACID' ? 'C4 H6 O6' 150.087 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4EKA _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.79 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 55.87 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.8 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details 'sodium potassium tartrate, pH 6.8, vapor diffusion, hanging drop, temperature 298K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 25 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 270' _diffrn_detector.pdbx_collection_date 2010-06-22 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator SI _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.917 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'CHESS BEAMLINE F1' _diffrn_source.pdbx_wavelength_list 0.917 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site CHESS _diffrn_source.pdbx_synchrotron_beamline F1 # _reflns.entry_id 4EKA _reflns.B_iso_Wilson_estimate 22.390 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 1.55 _reflns.d_resolution_low 21.9400 _reflns.number_all ? _reflns.number_obs 37321 _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 4EKA _refine.ls_d_res_high 1.5500 _refine.ls_d_res_low 21.9400 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs ? _refine.ls_number_reflns_obs 37321 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1913 _refine.ls_R_factor_R_work 0.1908 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2004 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.9900 _refine.ls_number_reflns_R_free 1864 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 26.0432 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.3500 _refine.aniso_B[2][2] -0.3500 _refine.aniso_B[3][3] 0.7000 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9581 _refine.correlation_coeff_Fo_to_Fc_free 0.9536 _refine.overall_SU_R_Cruickshank_DPI 0.0720 _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.solvent_model_details ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 110.060 _refine.B_iso_min 12.040 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.110 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 4EKA _refine_analyze.Luzzati_coordinate_error_obs 0.174 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1552 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 178 _refine_hist.number_atoms_total 1740 _refine_hist.d_res_high 1.5500 _refine_hist.d_res_low 21.9400 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id t_dihedral_angle_d 557 ? ? 2.000 SINUSOIDAL 'X-RAY DIFFRACTION' t_trig_c_planes 37 ? ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_gen_planes 243 ? ? 5.000 HARMONIC 'X-RAY DIFFRACTION' t_it 1664 ? ? 20.000 HARMONIC 'X-RAY DIFFRACTION' t_nbd ? ? ? ? ? 'X-RAY DIFFRACTION' t_improper_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_pseud_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_chiral_improper_torsion 225 ? ? 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_sum_occupancies ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_distance ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_ideal_dist_contact 2118 ? ? 4.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_bond_d 1664 0.010 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_angle_deg 2265 1.160 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_omega_torsion ? 4.580 ? ? ? 'X-RAY DIFFRACTION' t_other_torsion ? 16.610 ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.5500 _refine_ls_shell.d_res_low 1.5900 _refine_ls_shell.pdbx_total_number_of_bins_used 19 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.number_reflns_R_work 2690 _refine_ls_shell.R_factor_all 0.2543 _refine_ls_shell.R_factor_R_work 0.2540 _refine_ls_shell.R_factor_R_free 0.2604 _refine_ls_shell.percent_reflns_R_free 4.9800 _refine_ls_shell.number_reflns_R_free 141 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2831 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4EKA _struct.title 'Final Thaumatin Structure for Radiation Damage Experiment at 25 K' _struct.pdbx_descriptor Thaumatin-1 _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4EKA _struct_keywords.text 'sweet protein, radiation damage, PLANT PROTEIN' _struct_keywords.pdbx_keywords 'PLANT PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 129 ? CYS A 134 ? ASP A 129 CYS A 134 1 ? 6 HELX_P HELX_P2 2 PRO A 135 ? LYS A 139 ? PRO A 135 LYS A 139 5 ? 5 HELX_P HELX_P3 3 ASP A 147 ? GLN A 153 ? ASP A 147 GLN A 153 1 ? 7 HELX_P HELX_P4 4 THR A 154 ? CYS A 159 ? THR A 154 CYS A 159 1 ? 6 HELX_P HELX_P5 5 THR A 167 ? CYS A 177 ? THR A 167 CYS A 177 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 9 SG ? ? ? 1_555 A CYS 204 SG ? ? A CYS 9 A CYS 204 1_555 ? ? ? ? ? ? ? 2.066 ? disulf2 disulf ? ? A CYS 56 SG ? ? ? 1_555 A CYS 66 SG A ? A CYS 56 A CYS 66 1_555 ? ? ? ? ? ? ? 2.041 ? disulf3 disulf ? ? A CYS 56 SG ? ? ? 1_555 A CYS 66 SG B ? A CYS 56 A CYS 66 1_555 ? ? ? ? ? ? ? 2.083 ? disulf4 disulf ? ? A CYS 71 SG ? ? ? 1_555 A CYS 77 SG ? ? A CYS 71 A CYS 77 1_555 ? ? ? ? ? ? ? 2.041 ? disulf5 disulf ? ? A CYS 121 SG ? ? ? 1_555 A CYS 193 SG A ? A CYS 121 A CYS 193 1_555 ? ? ? ? ? ? ? 2.035 ? disulf6 disulf ? ? A CYS 121 SG ? ? ? 1_555 A CYS 193 SG B ? A CYS 121 A CYS 193 1_555 ? ? ? ? ? ? ? 2.059 ? disulf7 disulf ? ? A CYS 126 SG A ? ? 1_555 A CYS 177 SG ? ? A CYS 126 A CYS 177 1_555 ? ? ? ? ? ? ? 2.047 ? disulf8 disulf ? ? A CYS 126 SG B ? ? 1_555 A CYS 177 SG ? ? A CYS 126 A CYS 177 1_555 ? ? ? ? ? ? ? 2.062 ? disulf9 disulf ? ? A CYS 134 SG ? ? ? 1_555 A CYS 145 SG ? ? A CYS 134 A CYS 145 1_555 ? ? ? ? ? ? ? 2.069 ? disulf10 disulf ? ? A CYS 149 SG ? ? ? 1_555 A CYS 158 SG ? ? A CYS 149 A CYS 158 1_555 ? ? ? ? ? ? ? 2.066 ? disulf11 disulf ? ? A CYS 159 SG A ? ? 1_555 A CYS 164 SG ? ? A CYS 159 A CYS 164 1_555 ? ? ? ? ? ? ? 2.035 ? disulf12 disulf ? ? A CYS 159 SG B ? ? 1_555 A CYS 164 SG ? ? A CYS 159 A CYS 164 1_555 ? ? ? ? ? ? ? 2.040 ? disulf13 disulf ? ? A CYS 159 SG C ? ? 1_555 A CYS 164 SG ? ? A CYS 159 A CYS 164 1_555 ? ? ? ? ? ? ? 2.046 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id PRO _struct_mon_prot_cis.label_seq_id 83 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id PRO _struct_mon_prot_cis.auth_seq_id 83 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 84 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 84 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 6.61 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 6 ? C ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 36 ? ASN A 40 ? SER A 36 ASN A 40 A 2 THR A 2 ? ASN A 7 ? THR A 2 ASN A 7 A 3 TYR A 199 ? PHE A 203 ? TYR A 199 PHE A 203 A 4 MET A 112 ? PRO A 116 ? MET A 112 PRO A 116 A 5 VAL A 124 ? CYS A 126 ? VAL A 124 CYS A 126 B 1 ALA A 23 ? LEU A 31 ? ALA A 23 LEU A 31 B 2 VAL A 13 ? SER A 18 ? VAL A 13 SER A 18 B 3 GLY A 48 ? PHE A 58 ? GLY A 48 PHE A 58 B 4 LEU A 87 ? GLN A 94 ? LEU A 87 GLN A 94 B 5 LYS A 97 ? SER A 103 ? LYS A 97 SER A 103 B 6 ALA A 180 ? PHE A 181 ? ALA A 180 PHE A 181 C 1 GLY A 64 ? THR A 68 ? GLY A 64 THR A 68 C 2 GLY A 48 ? PHE A 58 ? GLY A 48 PHE A 58 C 3 LEU A 87 ? GLN A 94 ? LEU A 87 GLN A 94 C 4 LYS A 97 ? SER A 103 ? LYS A 97 SER A 103 C 5 VAL A 191 ? PRO A 194 ? VAL A 191 PRO A 194 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O TRP A 37 ? O TRP A 37 N ILE A 5 ? N ILE A 5 A 2 3 N VAL A 6 ? N VAL A 6 O VAL A 201 ? O VAL A 201 A 3 4 O ARG A 200 ? O ARG A 200 N SER A 115 ? N SER A 115 A 4 5 N PHE A 114 ? N PHE A 114 O VAL A 124 ? O VAL A 124 B 1 2 O LEU A 31 ? O LEU A 31 N VAL A 13 ? N VAL A 13 B 2 3 N TRP A 14 ? N TRP A 14 O ARG A 53 ? O ARG A 53 B 3 4 N ILE A 50 ? N ILE A 50 O ALA A 88 ? O ALA A 88 B 4 5 N GLN A 94 ? N GLN A 94 O LYS A 97 ? O LYS A 97 B 5 6 N ILE A 102 ? N ILE A 102 O PHE A 181 ? O PHE A 181 C 1 2 O ILE A 65 ? O ILE A 65 N TYR A 57 ? N TYR A 57 C 2 3 N ILE A 50 ? N ILE A 50 O ALA A 88 ? O ALA A 88 C 3 4 N GLN A 94 ? N GLN A 94 O LYS A 97 ? O LYS A 97 C 4 5 N ASP A 98 ? N ASP A 98 O CYS A 193 ? O CYS A 193 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 10 _struct_site.details 'BINDING SITE FOR RESIDUE TLA A 1001' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 ARG A 29 ? ARG A 29 . ? 1_555 ? 2 AC1 10 GLU A 35 ? GLU A 35 . ? 1_555 ? 3 AC1 10 SER A 36 ? SER A 36 . ? 1_555 ? 4 AC1 10 LYS A 67 ? LYS A 67 . ? 5_545 ? 5 AC1 10 TYR A 157 ? TYR A 157 . ? 4_454 ? 6 AC1 10 HOH C . ? HOH A 1102 . ? 1_555 ? 7 AC1 10 HOH C . ? HOH A 1110 . ? 1_555 ? 8 AC1 10 HOH C . ? HOH A 1154 . ? 1_555 ? 9 AC1 10 HOH C . ? HOH A 1256 . ? 1_555 ? 10 AC1 10 HOH C . ? HOH A 1267 . ? 1_555 ? # _atom_sites.entry_id 4EKA _atom_sites.fract_transf_matrix[1][1] 0.017437 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017437 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006632 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 1 ALA ALA A . n A 1 2 THR 2 2 2 THR THR A . n A 1 3 PHE 3 3 3 PHE PHE A . n A 1 4 GLU 4 4 4 GLU GLU A . n A 1 5 ILE 5 5 5 ILE ILE A . n A 1 6 VAL 6 6 6 VAL VAL A . n A 1 7 ASN 7 7 7 ASN ASN A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 CYS 9 9 9 CYS CYS A . n A 1 10 SER 10 10 10 SER SER A . n A 1 11 TYR 11 11 11 TYR TYR A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 TRP 14 14 14 TRP TRP A . n A 1 15 ALA 15 15 15 ALA ALA A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 SER 18 18 18 SER SER A . n A 1 19 LYS 19 19 19 LYS LYS A . n A 1 20 GLY 20 20 20 GLY GLY A . n A 1 21 ASP 21 21 21 ASP ASP A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 ALA 23 23 23 ALA ALA A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 ASP 25 25 25 ASP ASP A . n A 1 26 ALA 26 26 26 ALA ALA A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 GLY 28 28 28 GLY GLY A . n A 1 29 ARG 29 29 29 ARG ARG A . n A 1 30 GLN 30 30 30 GLN GLN A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 ASN 32 32 32 ASN ASN A . n A 1 33 SER 33 33 33 SER SER A . n A 1 34 GLY 34 34 34 GLY GLY A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 SER 36 36 36 SER SER A . n A 1 37 TRP 37 37 37 TRP TRP A . n A 1 38 THR 38 38 38 THR THR A . n A 1 39 ILE 39 39 39 ILE ILE A . n A 1 40 ASN 40 40 40 ASN ASN A . n A 1 41 VAL 41 41 41 VAL VAL A . n A 1 42 GLU 42 42 42 GLU GLU A . n A 1 43 PRO 43 43 43 PRO PRO A . n A 1 44 GLY 44 44 44 GLY GLY A . n A 1 45 THR 45 45 45 THR THR A . n A 1 46 LYS 46 46 46 LYS LYS A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 LYS 49 49 49 LYS LYS A . n A 1 50 ILE 50 50 50 ILE ILE A . n A 1 51 TRP 51 51 51 TRP TRP A . n A 1 52 ALA 52 52 52 ALA ALA A . n A 1 53 ARG 53 53 53 ARG ARG A . n A 1 54 THR 54 54 54 THR THR A . n A 1 55 ASP 55 55 55 ASP ASP A . n A 1 56 CYS 56 56 56 CYS CYS A . n A 1 57 TYR 57 57 57 TYR TYR A . n A 1 58 PHE 58 58 58 PHE PHE A . n A 1 59 ASP 59 59 59 ASP ASP A . n A 1 60 ASP 60 60 60 ASP ASP A . n A 1 61 SER 61 61 61 SER SER A . n A 1 62 GLY 62 62 62 GLY GLY A . n A 1 63 SER 63 63 63 SER SER A . n A 1 64 GLY 64 64 64 GLY GLY A . n A 1 65 ILE 65 65 65 ILE ILE A . n A 1 66 CYS 66 66 66 CYS CYS A . n A 1 67 LYS 67 67 67 LYS LYS A . n A 1 68 THR 68 68 68 THR THR A . n A 1 69 GLY 69 69 69 GLY GLY A . n A 1 70 ASP 70 70 70 ASP ASP A . n A 1 71 CYS 71 71 71 CYS CYS A . n A 1 72 GLY 72 72 72 GLY GLY A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 LEU 74 74 74 LEU LEU A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 ARG 76 76 76 ARG ARG A . n A 1 77 CYS 77 77 77 CYS CYS A . n A 1 78 LYS 78 78 78 LYS LYS A . n A 1 79 ARG 79 79 79 ARG ARG A . n A 1 80 PHE 80 80 80 PHE PHE A . n A 1 81 GLY 81 81 81 GLY GLY A . n A 1 82 ARG 82 82 82 ARG ARG A . n A 1 83 PRO 83 83 83 PRO PRO A . n A 1 84 PRO 84 84 84 PRO PRO A . n A 1 85 THR 85 85 85 THR THR A . n A 1 86 THR 86 86 86 THR THR A . n A 1 87 LEU 87 87 87 LEU LEU A . n A 1 88 ALA 88 88 88 ALA ALA A . n A 1 89 GLU 89 89 89 GLU GLU A . n A 1 90 PHE 90 90 90 PHE PHE A . n A 1 91 SER 91 91 91 SER SER A . n A 1 92 LEU 92 92 92 LEU LEU A . n A 1 93 ASN 93 93 93 ASN ASN A . n A 1 94 GLN 94 94 94 GLN GLN A . n A 1 95 TYR 95 95 95 TYR TYR A . n A 1 96 GLY 96 96 96 GLY GLY A . n A 1 97 LYS 97 97 97 LYS LYS A . n A 1 98 ASP 98 98 98 ASP ASP A . n A 1 99 TYR 99 99 99 TYR TYR A . n A 1 100 ILE 100 100 100 ILE ILE A . n A 1 101 ASP 101 101 101 ASP ASP A . n A 1 102 ILE 102 102 102 ILE ILE A . n A 1 103 SER 103 103 103 SER SER A . n A 1 104 ASN 104 104 104 ASN ASN A . n A 1 105 ILE 105 105 105 ILE ILE A . n A 1 106 LYS 106 106 106 LYS LYS A . n A 1 107 GLY 107 107 107 GLY GLY A . n A 1 108 PHE 108 108 108 PHE PHE A . n A 1 109 ASN 109 109 109 ASN ASN A . n A 1 110 VAL 110 110 110 VAL VAL A . n A 1 111 PRO 111 111 111 PRO PRO A . n A 1 112 MET 112 112 112 MET MET A . n A 1 113 ASP 113 113 113 ASP ASP A . n A 1 114 PHE 114 114 114 PHE PHE A . n A 1 115 SER 115 115 115 SER SER A . n A 1 116 PRO 116 116 116 PRO PRO A . n A 1 117 THR 117 117 117 THR THR A . n A 1 118 THR 118 118 118 THR THR A . n A 1 119 ARG 119 119 119 ARG ARG A . n A 1 120 GLY 120 120 120 GLY GLY A . n A 1 121 CYS 121 121 121 CYS CYS A . n A 1 122 ARG 122 122 122 ARG ARG A . n A 1 123 GLY 123 123 123 GLY GLY A . n A 1 124 VAL 124 124 124 VAL VAL A . n A 1 125 ARG 125 125 125 ARG ARG A . n A 1 126 CYS 126 126 126 CYS CYS A . n A 1 127 ALA 127 127 127 ALA ALA A . n A 1 128 ALA 128 128 128 ALA ALA A . n A 1 129 ASP 129 129 129 ASP ASP A . n A 1 130 ILE 130 130 130 ILE ILE A . n A 1 131 VAL 131 131 131 VAL VAL A . n A 1 132 GLY 132 132 132 GLY GLY A . n A 1 133 GLN 133 133 133 GLN GLN A . n A 1 134 CYS 134 134 134 CYS CYS A . n A 1 135 PRO 135 135 135 PRO PRO A . n A 1 136 ALA 136 136 136 ALA ALA A . n A 1 137 LYS 137 137 137 LYS LYS A . n A 1 138 LEU 138 138 138 LEU LEU A . n A 1 139 LYS 139 139 139 LYS LYS A . n A 1 140 ALA 140 140 140 ALA ALA A . n A 1 141 PRO 141 141 141 PRO PRO A . n A 1 142 GLY 142 142 142 GLY GLY A . n A 1 143 GLY 143 143 143 GLY GLY A . n A 1 144 GLY 144 144 144 GLY GLY A . n A 1 145 CYS 145 145 145 CYS CYS A . n A 1 146 ASN 146 146 146 ASN ASN A . n A 1 147 ASP 147 147 147 ASP ASP A . n A 1 148 ALA 148 148 148 ALA ALA A . n A 1 149 CYS 149 149 149 CYS CYS A . n A 1 150 THR 150 150 150 THR THR A . n A 1 151 VAL 151 151 151 VAL VAL A . n A 1 152 PHE 152 152 152 PHE PHE A . n A 1 153 GLN 153 153 153 GLN GLN A . n A 1 154 THR 154 154 154 THR THR A . n A 1 155 SER 155 155 155 SER SER A . n A 1 156 GLU 156 156 156 GLU GLU A . n A 1 157 TYR 157 157 157 TYR TYR A . n A 1 158 CYS 158 158 158 CYS CYS A . n A 1 159 CYS 159 159 159 CYS CYS A . n A 1 160 THR 160 160 160 THR THR A . n A 1 161 THR 161 161 161 THR THR A . n A 1 162 GLY 162 162 162 GLY GLY A . n A 1 163 LYS 163 163 163 LYS LYS A . n A 1 164 CYS 164 164 164 CYS CYS A . n A 1 165 GLY 165 165 165 GLY GLY A . n A 1 166 PRO 166 166 166 PRO PRO A . n A 1 167 THR 167 167 167 THR THR A . n A 1 168 GLU 168 168 168 GLU GLU A . n A 1 169 TYR 169 169 169 TYR TYR A . n A 1 170 SER 170 170 170 SER SER A . n A 1 171 ARG 171 171 171 ARG ARG A . n A 1 172 PHE 172 172 172 PHE PHE A . n A 1 173 PHE 173 173 173 PHE PHE A . n A 1 174 LYS 174 174 174 LYS LYS A . n A 1 175 ARG 175 175 175 ARG ARG A . n A 1 176 LEU 176 176 176 LEU LEU A . n A 1 177 CYS 177 177 177 CYS CYS A . n A 1 178 PRO 178 178 178 PRO PRO A . n A 1 179 ASP 179 179 179 ASP ASP A . n A 1 180 ALA 180 180 180 ALA ALA A . n A 1 181 PHE 181 181 181 PHE PHE A . n A 1 182 SER 182 182 182 SER SER A . n A 1 183 TYR 183 183 183 TYR TYR A . n A 1 184 VAL 184 184 184 VAL VAL A . n A 1 185 LEU 185 185 185 LEU LEU A . n A 1 186 ASP 186 186 186 ASP ASP A . n A 1 187 LYS 187 187 187 LYS LYS A . n A 1 188 PRO 188 188 188 PRO PRO A . n A 1 189 THR 189 189 189 THR THR A . n A 1 190 THR 190 190 190 THR THR A . n A 1 191 VAL 191 191 191 VAL VAL A . n A 1 192 THR 192 192 192 THR THR A . n A 1 193 CYS 193 193 193 CYS CYS A . n A 1 194 PRO 194 194 194 PRO PRO A . n A 1 195 GLY 195 195 195 GLY GLY A . n A 1 196 SER 196 196 196 SER SER A . n A 1 197 SER 197 197 197 SER SER A . n A 1 198 ASN 198 198 198 ASN ASN A . n A 1 199 TYR 199 199 199 TYR TYR A . n A 1 200 ARG 200 200 200 ARG ARG A . n A 1 201 VAL 201 201 201 VAL VAL A . n A 1 202 THR 202 202 202 THR THR A . n A 1 203 PHE 203 203 203 PHE PHE A . n A 1 204 CYS 204 204 204 CYS CYS A . n A 1 205 PRO 205 205 205 PRO PRO A . n A 1 206 THR 206 206 206 THR THR A . n A 1 207 ALA 207 207 207 ALA ALA A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TLA 1 1001 1001 TLA TLA A . C 3 HOH 1 1101 1 HOH HOH A . C 3 HOH 2 1102 2 HOH HOH A . C 3 HOH 3 1103 3 HOH HOH A . C 3 HOH 4 1104 4 HOH HOH A . C 3 HOH 5 1105 5 HOH HOH A . C 3 HOH 6 1106 6 HOH HOH A . C 3 HOH 7 1107 7 HOH HOH A . C 3 HOH 8 1108 8 HOH HOH A . C 3 HOH 9 1109 9 HOH HOH A . C 3 HOH 10 1110 10 HOH HOH A . C 3 HOH 11 1111 11 HOH HOH A . C 3 HOH 12 1112 12 HOH HOH A . C 3 HOH 13 1113 13 HOH HOH A . C 3 HOH 14 1114 14 HOH HOH A . C 3 HOH 15 1115 15 HOH HOH A . C 3 HOH 16 1116 16 HOH HOH A . C 3 HOH 17 1117 17 HOH HOH A . C 3 HOH 18 1118 18 HOH HOH A . C 3 HOH 19 1119 19 HOH HOH A . C 3 HOH 20 1120 20 HOH HOH A . C 3 HOH 21 1121 21 HOH HOH A . C 3 HOH 22 1122 22 HOH HOH A . C 3 HOH 23 1123 23 HOH HOH A . C 3 HOH 24 1124 24 HOH HOH A . C 3 HOH 25 1125 25 HOH HOH A . C 3 HOH 26 1126 26 HOH HOH A . C 3 HOH 27 1127 27 HOH HOH A . C 3 HOH 28 1128 28 HOH HOH A . C 3 HOH 29 1129 29 HOH HOH A . C 3 HOH 30 1130 30 HOH HOH A . C 3 HOH 31 1131 31 HOH HOH A . C 3 HOH 32 1132 32 HOH HOH A . C 3 HOH 33 1133 33 HOH HOH A . C 3 HOH 34 1134 34 HOH HOH A . C 3 HOH 35 1135 35 HOH HOH A . C 3 HOH 36 1136 36 HOH HOH A . C 3 HOH 37 1137 37 HOH HOH A . C 3 HOH 38 1138 38 HOH HOH A . C 3 HOH 39 1139 39 HOH HOH A . C 3 HOH 40 1140 40 HOH HOH A . C 3 HOH 41 1141 41 HOH HOH A . C 3 HOH 42 1142 42 HOH HOH A . C 3 HOH 43 1143 43 HOH HOH A . C 3 HOH 44 1144 44 HOH HOH A . C 3 HOH 45 1145 45 HOH HOH A . C 3 HOH 46 1146 46 HOH HOH A . C 3 HOH 47 1147 47 HOH HOH A . C 3 HOH 48 1148 48 HOH HOH A . C 3 HOH 49 1149 49 HOH HOH A . C 3 HOH 50 1150 50 HOH HOH A . C 3 HOH 51 1151 51 HOH HOH A . C 3 HOH 52 1152 52 HOH HOH A . C 3 HOH 53 1153 53 HOH HOH A . C 3 HOH 54 1154 54 HOH HOH A . C 3 HOH 55 1155 55 HOH HOH A . C 3 HOH 56 1156 56 HOH HOH A . C 3 HOH 57 1157 57 HOH HOH A . C 3 HOH 58 1158 58 HOH HOH A . C 3 HOH 59 1159 59 HOH HOH A . C 3 HOH 60 1160 60 HOH HOH A . C 3 HOH 61 1161 61 HOH HOH A . C 3 HOH 62 1162 62 HOH HOH A . C 3 HOH 63 1163 63 HOH HOH A . C 3 HOH 64 1164 64 HOH HOH A . C 3 HOH 65 1165 65 HOH HOH A . C 3 HOH 66 1166 66 HOH HOH A . C 3 HOH 67 1167 67 HOH HOH A . C 3 HOH 68 1168 68 HOH HOH A . C 3 HOH 69 1169 69 HOH HOH A . C 3 HOH 70 1170 70 HOH HOH A . C 3 HOH 71 1171 71 HOH HOH A . C 3 HOH 72 1172 72 HOH HOH A . C 3 HOH 73 1173 73 HOH HOH A . C 3 HOH 74 1174 74 HOH HOH A . C 3 HOH 75 1175 75 HOH HOH A . C 3 HOH 76 1176 76 HOH HOH A . C 3 HOH 77 1177 77 HOH HOH A . C 3 HOH 78 1178 78 HOH HOH A . C 3 HOH 79 1179 79 HOH HOH A . C 3 HOH 80 1180 80 HOH HOH A . C 3 HOH 81 1181 81 HOH HOH A . C 3 HOH 82 1182 82 HOH HOH A . C 3 HOH 83 1183 83 HOH HOH A . C 3 HOH 84 1184 84 HOH HOH A . C 3 HOH 85 1185 85 HOH HOH A . C 3 HOH 86 1186 86 HOH HOH A . C 3 HOH 87 1187 87 HOH HOH A . C 3 HOH 88 1188 88 HOH HOH A . C 3 HOH 89 1189 89 HOH HOH A . C 3 HOH 90 1190 90 HOH HOH A . C 3 HOH 91 1191 91 HOH HOH A . C 3 HOH 92 1192 92 HOH HOH A . C 3 HOH 93 1193 93 HOH HOH A . C 3 HOH 94 1194 94 HOH HOH A . C 3 HOH 95 1195 95 HOH HOH A . C 3 HOH 96 1196 96 HOH HOH A . C 3 HOH 97 1197 97 HOH HOH A . C 3 HOH 98 1198 98 HOH HOH A . C 3 HOH 99 1199 99 HOH HOH A . C 3 HOH 100 1200 100 HOH HOH A . C 3 HOH 101 1201 101 HOH HOH A . C 3 HOH 102 1202 102 HOH HOH A . C 3 HOH 103 1203 103 HOH HOH A . C 3 HOH 104 1204 104 HOH HOH A . C 3 HOH 105 1205 105 HOH HOH A . C 3 HOH 106 1206 106 HOH HOH A . C 3 HOH 107 1207 107 HOH HOH A . C 3 HOH 108 1208 108 HOH HOH A . C 3 HOH 109 1209 109 HOH HOH A . C 3 HOH 110 1210 110 HOH HOH A . C 3 HOH 111 1211 111 HOH HOH A . C 3 HOH 112 1212 112 HOH HOH A . C 3 HOH 113 1213 113 HOH HOH A . C 3 HOH 114 1214 114 HOH HOH A . C 3 HOH 115 1215 115 HOH HOH A . C 3 HOH 116 1216 116 HOH HOH A . C 3 HOH 117 1217 117 HOH HOH A . C 3 HOH 118 1218 118 HOH HOH A . C 3 HOH 119 1219 119 HOH HOH A . C 3 HOH 120 1220 120 HOH HOH A . C 3 HOH 121 1221 121 HOH HOH A . C 3 HOH 122 1222 122 HOH HOH A . C 3 HOH 123 1223 123 HOH HOH A . C 3 HOH 124 1224 124 HOH HOH A . C 3 HOH 125 1225 125 HOH HOH A . C 3 HOH 126 1226 126 HOH HOH A . C 3 HOH 127 1227 127 HOH HOH A . C 3 HOH 128 1228 128 HOH HOH A . C 3 HOH 129 1229 129 HOH HOH A . C 3 HOH 130 1230 130 HOH HOH A . C 3 HOH 131 1231 131 HOH HOH A . C 3 HOH 132 1232 132 HOH HOH A . C 3 HOH 133 1233 133 HOH HOH A . C 3 HOH 134 1234 134 HOH HOH A . C 3 HOH 135 1235 135 HOH HOH A . C 3 HOH 136 1236 136 HOH HOH A . C 3 HOH 137 1237 137 HOH HOH A . C 3 HOH 138 1238 138 HOH HOH A . C 3 HOH 139 1239 139 HOH HOH A . C 3 HOH 140 1240 140 HOH HOH A . C 3 HOH 141 1241 141 HOH HOH A . C 3 HOH 142 1242 142 HOH HOH A . C 3 HOH 143 1243 143 HOH HOH A . C 3 HOH 144 1244 144 HOH HOH A . C 3 HOH 145 1245 145 HOH HOH A . C 3 HOH 146 1246 146 HOH HOH A . C 3 HOH 147 1247 147 HOH HOH A . C 3 HOH 148 1248 148 HOH HOH A . C 3 HOH 149 1249 149 HOH HOH A . C 3 HOH 150 1250 150 HOH HOH A . C 3 HOH 151 1251 151 HOH HOH A . C 3 HOH 152 1252 152 HOH HOH A . C 3 HOH 153 1253 153 HOH HOH A . C 3 HOH 154 1254 154 HOH HOH A . C 3 HOH 155 1255 155 HOH HOH A . C 3 HOH 156 1256 156 HOH HOH A . C 3 HOH 157 1257 157 HOH HOH A . C 3 HOH 158 1258 158 HOH HOH A . C 3 HOH 159 1259 159 HOH HOH A . C 3 HOH 160 1260 160 HOH HOH A . C 3 HOH 161 1261 161 HOH HOH A . C 3 HOH 162 1262 162 HOH HOH A . C 3 HOH 163 1263 163 HOH HOH A . C 3 HOH 164 1264 164 HOH HOH A . C 3 HOH 165 1265 165 HOH HOH A . C 3 HOH 166 1266 166 HOH HOH A . C 3 HOH 167 1267 167 HOH HOH A . C 3 HOH 168 1268 168 HOH HOH A . C 3 HOH 169 1269 169 HOH HOH A . C 3 HOH 170 1270 170 HOH HOH A . C 3 HOH 171 1271 171 HOH HOH A . C 3 HOH 172 1272 172 HOH HOH A . C 3 HOH 173 1273 173 HOH HOH A . C 3 HOH 174 1274 174 HOH HOH A . C 3 HOH 175 1275 175 HOH HOH A . C 3 HOH 176 1276 176 HOH HOH A . C 3 HOH 177 1277 177 HOH HOH A . C 3 HOH 178 1278 178 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-08-29 2 'Structure model' 1 1 2013-01-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 BUSTER-TNT . ? program 'Gerard Bricogne' buster-develop@GlobalPhasing.com refinement http://www.globalphasing.com/buster/ ? ? 2 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 ADSC Quantum ? ? ? ? 'data collection' ? ? ? 4 DENZO . ? ? ? ? 'data reduction' ? ? ? 5 SCALEPACK . ? ? ? ? 'data scaling' ? ? ? 6 BUSTER 2.8.0 ? ? ? ? phasing ? ? ? 7 BUSTER 2.8.0 ? ? ? ? refinement ? ? ? # _pdbx_entry_details.entry_id 4EKA _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THAUMATIN WAS PURCHASED FROM SIGMA-ALDRICH (CATALOG # T7638) AND CONTAINED A MIXTURE OF THAUMATIN I AND THAUMATIN II. LYS46 WAS USED IN PLACE OF ASN46 AND ASP113 WAS USED IN PLACE OF ASN113 AS WAS DONE IN ENTRY 1RQW AND AS SUGGESTED BY KO ET AL., ACTA CRYST. D50,813(1994). ; _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 25 ? ? 59.15 -135.44 2 1 CYS A 71 ? ? -115.32 67.07 3 1 CYS A 121 ? ? -145.45 -145.95 4 1 THR A 160 ? ? -54.97 -78.94 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'L(+)-TARTARIC ACID' TLA 3 water HOH #