data_4EM7 # _entry.id 4EM7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4EM7 pdb_00004em7 10.2210/pdb4em7/pdb RCSB RCSB071793 ? ? WWPDB D_1000071793 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-08-01 2 'Structure model' 1 1 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 2 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 2 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 4EM7 _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-04-11 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4EMV _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Boriack-Sjodin, P.A.' 1 'Manchester, J.' 2 # _citation.id primary _citation.title 'Discovery of a novel azaindole class of antibacterial agents targeting the ATPase domains of DNA gyrase and Topoisomerase IV.' _citation.journal_abbrev Bioorg.Med.Chem.Lett. _citation.journal_volume 22 _citation.page_first 5150 _citation.page_last 5156 _citation.year 2012 _citation.journal_id_ASTM BMCLE8 _citation.country UK _citation.journal_id_ISSN 0960-894X _citation.journal_id_CSD 1127 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22814212 _citation.pdbx_database_id_DOI 10.1016/j.bmcl.2012.05.128 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Manchester, J.I.' 1 ? primary 'Dussault, D.D.' 2 ? primary 'Rose, J.A.' 3 ? primary 'Boriack-Sjodin, P.A.' 4 ? primary 'Uria-Nickelsen, M.' 5 ? primary 'Ioannidis, G.' 6 ? primary 'Bist, S.' 7 ? primary 'Fleming, P.' 8 ? primary 'Hull, K.G.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'DNA topoisomerase IV, B subunit' 24600.723 1 5.99.1.- ? 'ATPase domain (UNP Residues 1-226)' ? 2 non-polymer syn '3-[3-(1H-pyrrolo[2,3-b]pyridin-5-yl)phenyl]propanoic acid' 266.295 1 ? ? ? ? 3 water nat water 18.015 112 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTINKDGSLTVQDHG RGMPTGMHAMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLK KIGTALKSKTGTKVTFMPDATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEAIEFHYEN ; _entity_poly.pdbx_seq_one_letter_code_can ;MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTINKDGSLTVQDHG RGMPTGMHAMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLK KIGTALKSKTGTKVTFMPDATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEAIEFHYEN ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '3-[3-(1H-pyrrolo[2,3-b]pyridin-5-yl)phenyl]propanoic acid' 0RA 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 SER n 1 3 LYS n 1 4 LYS n 1 5 GLU n 1 6 ILE n 1 7 ASN n 1 8 ILE n 1 9 ASN n 1 10 ASN n 1 11 TYR n 1 12 ASN n 1 13 ASP n 1 14 ASP n 1 15 ALA n 1 16 ILE n 1 17 GLN n 1 18 VAL n 1 19 LEU n 1 20 GLU n 1 21 GLY n 1 22 LEU n 1 23 ASP n 1 24 ALA n 1 25 VAL n 1 26 ARG n 1 27 LYS n 1 28 ARG n 1 29 PRO n 1 30 GLY n 1 31 MET n 1 32 TYR n 1 33 ILE n 1 34 GLY n 1 35 SER n 1 36 THR n 1 37 ASP n 1 38 GLY n 1 39 ALA n 1 40 GLY n 1 41 LEU n 1 42 HIS n 1 43 HIS n 1 44 LEU n 1 45 VAL n 1 46 TRP n 1 47 GLU n 1 48 ILE n 1 49 VAL n 1 50 ASP n 1 51 ASN n 1 52 ALA n 1 53 VAL n 1 54 ASP n 1 55 GLU n 1 56 ALA n 1 57 LEU n 1 58 SER n 1 59 GLY n 1 60 PHE n 1 61 GLY n 1 62 ASP n 1 63 ARG n 1 64 ILE n 1 65 ASP n 1 66 VAL n 1 67 THR n 1 68 ILE n 1 69 ASN n 1 70 LYS n 1 71 ASP n 1 72 GLY n 1 73 SER n 1 74 LEU n 1 75 THR n 1 76 VAL n 1 77 GLN n 1 78 ASP n 1 79 HIS n 1 80 GLY n 1 81 ARG n 1 82 GLY n 1 83 MET n 1 84 PRO n 1 85 THR n 1 86 GLY n 1 87 MET n 1 88 HIS n 1 89 ALA n 1 90 MET n 1 91 GLY n 1 92 ILE n 1 93 PRO n 1 94 THR n 1 95 VAL n 1 96 GLU n 1 97 VAL n 1 98 ILE n 1 99 PHE n 1 100 THR n 1 101 ILE n 1 102 LEU n 1 103 HIS n 1 104 ALA n 1 105 GLY n 1 106 GLY n 1 107 LYS n 1 108 PHE n 1 109 GLY n 1 110 GLN n 1 111 GLY n 1 112 GLY n 1 113 TYR n 1 114 LYS n 1 115 THR n 1 116 SER n 1 117 GLY n 1 118 GLY n 1 119 LEU n 1 120 HIS n 1 121 GLY n 1 122 VAL n 1 123 GLY n 1 124 SER n 1 125 SER n 1 126 VAL n 1 127 VAL n 1 128 ASN n 1 129 ALA n 1 130 LEU n 1 131 SER n 1 132 SER n 1 133 TRP n 1 134 LEU n 1 135 GLU n 1 136 VAL n 1 137 GLU n 1 138 ILE n 1 139 THR n 1 140 ARG n 1 141 ASP n 1 142 GLY n 1 143 ALA n 1 144 VAL n 1 145 TYR n 1 146 LYS n 1 147 GLN n 1 148 ARG n 1 149 PHE n 1 150 GLU n 1 151 ASN n 1 152 GLY n 1 153 GLY n 1 154 LYS n 1 155 PRO n 1 156 VAL n 1 157 THR n 1 158 THR n 1 159 LEU n 1 160 LYS n 1 161 LYS n 1 162 ILE n 1 163 GLY n 1 164 THR n 1 165 ALA n 1 166 LEU n 1 167 LYS n 1 168 SER n 1 169 LYS n 1 170 THR n 1 171 GLY n 1 172 THR n 1 173 LYS n 1 174 VAL n 1 175 THR n 1 176 PHE n 1 177 MET n 1 178 PRO n 1 179 ASP n 1 180 ALA n 1 181 THR n 1 182 ILE n 1 183 PHE n 1 184 SER n 1 185 THR n 1 186 THR n 1 187 ASP n 1 188 PHE n 1 189 LYS n 1 190 TYR n 1 191 ASN n 1 192 THR n 1 193 ILE n 1 194 SER n 1 195 GLU n 1 196 ARG n 1 197 LEU n 1 198 ASN n 1 199 GLU n 1 200 SER n 1 201 ALA n 1 202 PHE n 1 203 LEU n 1 204 LEU n 1 205 LYS n 1 206 ASN n 1 207 VAL n 1 208 THR n 1 209 LEU n 1 210 SER n 1 211 LEU n 1 212 THR n 1 213 ASP n 1 214 LYS n 1 215 ARG n 1 216 THR n 1 217 ASP n 1 218 GLU n 1 219 ALA n 1 220 ILE n 1 221 GLU n 1 222 PHE n 1 223 HIS n 1 224 TYR n 1 225 GLU n 1 226 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'ParE, SPAR94_0831' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Streptococcus pneumoniae GA47373' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 760835 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 0RA non-polymer . '3-[3-(1H-pyrrolo[2,3-b]pyridin-5-yl)phenyl]propanoic acid' ? 'C16 H14 N2 O2' 266.295 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 SER 2 2 ? ? ? A . n A 1 3 LYS 3 3 ? ? ? A . n A 1 4 LYS 4 4 ? ? ? A . n A 1 5 GLU 5 5 ? ? ? A . n A 1 6 ILE 6 6 ? ? ? A . n A 1 7 ASN 7 7 ? ? ? A . n A 1 8 ILE 8 8 ? ? ? A . n A 1 9 ASN 9 9 ? ? ? A . n A 1 10 ASN 10 10 ? ? ? A . n A 1 11 TYR 11 11 ? ? ? A . n A 1 12 ASN 12 12 ? ? ? A . n A 1 13 ASP 13 13 ? ? ? A . n A 1 14 ASP 14 14 ? ? ? A . n A 1 15 ALA 15 15 ? ? ? A . n A 1 16 ILE 16 16 ? ? ? A . n A 1 17 GLN 17 17 17 GLN GLN A . n A 1 18 VAL 18 18 18 VAL VAL A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 GLU 20 20 20 GLU GLU A . n A 1 21 GLY 21 21 21 GLY GLY A . n A 1 22 LEU 22 22 22 LEU LEU A . n A 1 23 ASP 23 23 23 ASP ASP A . n A 1 24 ALA 24 24 24 ALA ALA A . n A 1 25 VAL 25 25 25 VAL VAL A . n A 1 26 ARG 26 26 26 ARG ARG A . n A 1 27 LYS 27 27 27 LYS LYS A . n A 1 28 ARG 28 28 28 ARG ARG A . n A 1 29 PRO 29 29 29 PRO PRO A . n A 1 30 GLY 30 30 30 GLY GLY A . n A 1 31 MET 31 31 31 MET MET A . n A 1 32 TYR 32 32 32 TYR TYR A . n A 1 33 ILE 33 33 33 ILE ILE A . n A 1 34 GLY 34 34 34 GLY GLY A . n A 1 35 SER 35 35 35 SER SER A . n A 1 36 THR 36 36 36 THR THR A . n A 1 37 ASP 37 37 37 ASP ASP A . n A 1 38 GLY 38 38 38 GLY GLY A . n A 1 39 ALA 39 39 39 ALA ALA A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 LEU 41 41 41 LEU LEU A . n A 1 42 HIS 42 42 42 HIS HIS A . n A 1 43 HIS 43 43 43 HIS HIS A . n A 1 44 LEU 44 44 44 LEU LEU A . n A 1 45 VAL 45 45 45 VAL VAL A . n A 1 46 TRP 46 46 46 TRP TRP A . n A 1 47 GLU 47 47 47 GLU GLU A . n A 1 48 ILE 48 48 48 ILE ILE A . n A 1 49 VAL 49 49 49 VAL VAL A . n A 1 50 ASP 50 50 50 ASP ASP A . n A 1 51 ASN 51 51 51 ASN ASN A . n A 1 52 ALA 52 52 52 ALA ALA A . n A 1 53 VAL 53 53 53 VAL VAL A . n A 1 54 ASP 54 54 54 ASP ASP A . n A 1 55 GLU 55 55 55 GLU GLU A . n A 1 56 ALA 56 56 56 ALA ALA A . n A 1 57 LEU 57 57 57 LEU LEU A . n A 1 58 SER 58 58 58 SER SER A . n A 1 59 GLY 59 59 59 GLY GLY A . n A 1 60 PHE 60 60 60 PHE PHE A . n A 1 61 GLY 61 61 61 GLY GLY A . n A 1 62 ASP 62 62 62 ASP ASP A . n A 1 63 ARG 63 63 63 ARG ARG A . n A 1 64 ILE 64 64 64 ILE ILE A . n A 1 65 ASP 65 65 65 ASP ASP A . n A 1 66 VAL 66 66 66 VAL VAL A . n A 1 67 THR 67 67 67 THR THR A . n A 1 68 ILE 68 68 68 ILE ILE A . n A 1 69 ASN 69 69 69 ASN ASN A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 ASP 71 71 71 ASP ASP A . n A 1 72 GLY 72 72 72 GLY GLY A . n A 1 73 SER 73 73 73 SER SER A . n A 1 74 LEU 74 74 74 LEU LEU A . n A 1 75 THR 75 75 75 THR THR A . n A 1 76 VAL 76 76 76 VAL VAL A . n A 1 77 GLN 77 77 77 GLN GLN A . n A 1 78 ASP 78 78 78 ASP ASP A . n A 1 79 HIS 79 79 79 HIS HIS A . n A 1 80 GLY 80 80 80 GLY GLY A . n A 1 81 ARG 81 81 81 ARG ARG A . n A 1 82 GLY 82 82 82 GLY GLY A . n A 1 83 MET 83 83 83 MET MET A . n A 1 84 PRO 84 84 84 PRO PRO A . n A 1 85 THR 85 85 85 THR THR A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 MET 87 87 87 MET MET A . n A 1 88 HIS 88 88 88 HIS HIS A . n A 1 89 ALA 89 89 89 ALA ALA A . n A 1 90 MET 90 90 90 MET MET A . n A 1 91 GLY 91 91 91 GLY GLY A . n A 1 92 ILE 92 92 92 ILE ILE A . n A 1 93 PRO 93 93 93 PRO PRO A . n A 1 94 THR 94 94 94 THR THR A . n A 1 95 VAL 95 95 95 VAL VAL A . n A 1 96 GLU 96 96 96 GLU GLU A . n A 1 97 VAL 97 97 97 VAL VAL A . n A 1 98 ILE 98 98 98 ILE ILE A . n A 1 99 PHE 99 99 99 PHE PHE A . n A 1 100 THR 100 100 100 THR THR A . n A 1 101 ILE 101 101 101 ILE ILE A . n A 1 102 LEU 102 102 102 LEU LEU A . n A 1 103 HIS 103 103 103 HIS HIS A . n A 1 104 ALA 104 104 104 ALA ALA A . n A 1 105 GLY 105 105 ? ? ? A . n A 1 106 GLY 106 106 ? ? ? A . n A 1 107 LYS 107 107 ? ? ? A . n A 1 108 PHE 108 108 ? ? ? A . n A 1 109 GLY 109 109 ? ? ? A . n A 1 110 GLN 110 110 ? ? ? A . n A 1 111 GLY 111 111 ? ? ? A . n A 1 112 GLY 112 112 ? ? ? A . n A 1 113 TYR 113 113 ? ? ? A . n A 1 114 LYS 114 114 ? ? ? A . n A 1 115 THR 115 115 ? ? ? A . n A 1 116 SER 116 116 ? ? ? A . n A 1 117 GLY 117 117 ? ? ? A . n A 1 118 GLY 118 118 ? ? ? A . n A 1 119 LEU 119 119 ? ? ? A . n A 1 120 HIS 120 120 ? ? ? A . n A 1 121 GLY 121 121 ? ? ? A . n A 1 122 VAL 122 122 122 VAL VAL A . n A 1 123 GLY 123 123 123 GLY GLY A . n A 1 124 SER 124 124 124 SER SER A . n A 1 125 SER 125 125 125 SER SER A . n A 1 126 VAL 126 126 126 VAL VAL A . n A 1 127 VAL 127 127 127 VAL VAL A . n A 1 128 ASN 128 128 128 ASN ASN A . n A 1 129 ALA 129 129 129 ALA ALA A . n A 1 130 LEU 130 130 130 LEU LEU A . n A 1 131 SER 131 131 131 SER SER A . n A 1 132 SER 132 132 132 SER SER A . n A 1 133 TRP 133 133 133 TRP TRP A . n A 1 134 LEU 134 134 134 LEU LEU A . n A 1 135 GLU 135 135 135 GLU GLU A . n A 1 136 VAL 136 136 136 VAL VAL A . n A 1 137 GLU 137 137 137 GLU GLU A . n A 1 138 ILE 138 138 138 ILE ILE A . n A 1 139 THR 139 139 139 THR THR A . n A 1 140 ARG 140 140 140 ARG ARG A . n A 1 141 ASP 141 141 141 ASP ASP A . n A 1 142 GLY 142 142 142 GLY GLY A . n A 1 143 ALA 143 143 143 ALA ALA A . n A 1 144 VAL 144 144 144 VAL VAL A . n A 1 145 TYR 145 145 145 TYR TYR A . n A 1 146 LYS 146 146 146 LYS LYS A . n A 1 147 GLN 147 147 147 GLN GLN A . n A 1 148 ARG 148 148 148 ARG ARG A . n A 1 149 PHE 149 149 149 PHE PHE A . n A 1 150 GLU 150 150 150 GLU GLU A . n A 1 151 ASN 151 151 151 ASN ASN A . n A 1 152 GLY 152 152 152 GLY GLY A . n A 1 153 GLY 153 153 153 GLY GLY A . n A 1 154 LYS 154 154 154 LYS LYS A . n A 1 155 PRO 155 155 155 PRO PRO A . n A 1 156 VAL 156 156 156 VAL VAL A . n A 1 157 THR 157 157 157 THR THR A . n A 1 158 THR 158 158 158 THR THR A . n A 1 159 LEU 159 159 159 LEU LEU A . n A 1 160 LYS 160 160 160 LYS LYS A . n A 1 161 LYS 161 161 161 LYS LYS A . n A 1 162 ILE 162 162 162 ILE ILE A . n A 1 163 GLY 163 163 163 GLY GLY A . n A 1 164 THR 164 164 164 THR THR A . n A 1 165 ALA 165 165 165 ALA ALA A . n A 1 166 LEU 166 166 166 LEU LEU A . n A 1 167 LYS 167 167 167 LYS LYS A . n A 1 168 SER 168 168 168 SER SER A . n A 1 169 LYS 169 169 169 LYS LYS A . n A 1 170 THR 170 170 170 THR THR A . n A 1 171 GLY 171 171 171 GLY GLY A . n A 1 172 THR 172 172 172 THR THR A . n A 1 173 LYS 173 173 173 LYS LYS A . n A 1 174 VAL 174 174 174 VAL VAL A . n A 1 175 THR 175 175 175 THR THR A . n A 1 176 PHE 176 176 176 PHE PHE A . n A 1 177 MET 177 177 177 MET MET A . n A 1 178 PRO 178 178 178 PRO PRO A . n A 1 179 ASP 179 179 179 ASP ASP A . n A 1 180 ALA 180 180 180 ALA ALA A . n A 1 181 THR 181 181 181 THR THR A . n A 1 182 ILE 182 182 182 ILE ILE A . n A 1 183 PHE 183 183 183 PHE PHE A . n A 1 184 SER 184 184 184 SER SER A . n A 1 185 THR 185 185 185 THR THR A . n A 1 186 THR 186 186 186 THR THR A . n A 1 187 ASP 187 187 187 ASP ASP A . n A 1 188 PHE 188 188 188 PHE PHE A . n A 1 189 LYS 189 189 189 LYS LYS A . n A 1 190 TYR 190 190 190 TYR TYR A . n A 1 191 ASN 191 191 191 ASN ASN A . n A 1 192 THR 192 192 192 THR THR A . n A 1 193 ILE 193 193 193 ILE ILE A . n A 1 194 SER 194 194 194 SER SER A . n A 1 195 GLU 195 195 195 GLU GLU A . n A 1 196 ARG 196 196 196 ARG ARG A . n A 1 197 LEU 197 197 197 LEU LEU A . n A 1 198 ASN 198 198 198 ASN ASN A . n A 1 199 GLU 199 199 199 GLU GLU A . n A 1 200 SER 200 200 200 SER SER A . n A 1 201 ALA 201 201 201 ALA ALA A . n A 1 202 PHE 202 202 202 PHE PHE A . n A 1 203 LEU 203 203 203 LEU LEU A . n A 1 204 LEU 204 204 204 LEU LEU A . n A 1 205 LYS 205 205 205 LYS LYS A . n A 1 206 ASN 206 206 206 ASN ASN A . n A 1 207 VAL 207 207 207 VAL VAL A . n A 1 208 THR 208 208 208 THR THR A . n A 1 209 LEU 209 209 209 LEU LEU A . n A 1 210 SER 210 210 210 SER SER A . n A 1 211 LEU 211 211 211 LEU LEU A . n A 1 212 THR 212 212 212 THR THR A . n A 1 213 ASP 213 213 213 ASP ASP A . n A 1 214 LYS 214 214 214 LYS LYS A . n A 1 215 ARG 215 215 215 ARG ARG A . n A 1 216 THR 216 216 216 THR THR A . n A 1 217 ASP 217 217 217 ASP ASP A . n A 1 218 GLU 218 218 218 GLU GLU A . n A 1 219 ALA 219 219 219 ALA ALA A . n A 1 220 ILE 220 220 220 ILE ILE A . n A 1 221 GLU 221 221 221 GLU GLU A . n A 1 222 PHE 222 222 222 PHE PHE A . n A 1 223 HIS 223 223 223 HIS HIS A . n A 1 224 TYR 224 224 224 TYR TYR A . n A 1 225 GLU 225 225 225 GLU GLU A . n A 1 226 ASN 226 226 226 ASN ASN A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 0RA 1 301 1 0RA INH A . C 3 HOH 1 401 2 HOH HOH A . C 3 HOH 2 402 3 HOH HOH A . C 3 HOH 3 403 4 HOH HOH A . C 3 HOH 4 404 5 HOH HOH A . C 3 HOH 5 405 6 HOH HOH A . C 3 HOH 6 406 7 HOH HOH A . C 3 HOH 7 407 8 HOH HOH A . C 3 HOH 8 408 9 HOH HOH A . C 3 HOH 9 409 10 HOH HOH A . C 3 HOH 10 410 11 HOH HOH A . C 3 HOH 11 411 12 HOH HOH A . C 3 HOH 12 412 13 HOH HOH A . C 3 HOH 13 413 14 HOH HOH A . C 3 HOH 14 414 15 HOH HOH A . C 3 HOH 15 415 16 HOH HOH A . C 3 HOH 16 416 17 HOH HOH A . C 3 HOH 17 417 18 HOH HOH A . C 3 HOH 18 418 19 HOH HOH A . C 3 HOH 19 419 20 HOH HOH A . C 3 HOH 20 420 21 HOH HOH A . C 3 HOH 21 421 22 HOH HOH A . C 3 HOH 22 422 23 HOH HOH A . C 3 HOH 23 423 24 HOH HOH A . C 3 HOH 24 424 25 HOH HOH A . C 3 HOH 25 425 26 HOH HOH A . C 3 HOH 26 426 27 HOH HOH A . C 3 HOH 27 427 28 HOH HOH A . C 3 HOH 28 428 29 HOH HOH A . C 3 HOH 29 429 30 HOH HOH A . C 3 HOH 30 430 31 HOH HOH A . C 3 HOH 31 431 33 HOH HOH A . C 3 HOH 32 432 34 HOH HOH A . C 3 HOH 33 433 35 HOH HOH A . C 3 HOH 34 434 37 HOH HOH A . C 3 HOH 35 435 38 HOH HOH A . C 3 HOH 36 436 39 HOH HOH A . C 3 HOH 37 437 40 HOH HOH A . C 3 HOH 38 438 41 HOH HOH A . C 3 HOH 39 439 42 HOH HOH A . C 3 HOH 40 440 43 HOH HOH A . C 3 HOH 41 441 44 HOH HOH A . C 3 HOH 42 442 45 HOH HOH A . C 3 HOH 43 443 46 HOH HOH A . C 3 HOH 44 444 47 HOH HOH A . C 3 HOH 45 445 48 HOH HOH A . C 3 HOH 46 446 49 HOH HOH A . C 3 HOH 47 447 50 HOH HOH A . C 3 HOH 48 448 51 HOH HOH A . C 3 HOH 49 449 53 HOH HOH A . C 3 HOH 50 450 54 HOH HOH A . C 3 HOH 51 451 55 HOH HOH A . C 3 HOH 52 452 56 HOH HOH A . C 3 HOH 53 453 57 HOH HOH A . C 3 HOH 54 454 58 HOH HOH A . C 3 HOH 55 455 59 HOH HOH A . C 3 HOH 56 456 62 HOH HOH A . C 3 HOH 57 457 63 HOH HOH A . C 3 HOH 58 458 64 HOH HOH A . C 3 HOH 59 459 66 HOH HOH A . C 3 HOH 60 460 68 HOH HOH A . C 3 HOH 61 461 69 HOH HOH A . C 3 HOH 62 462 70 HOH HOH A . C 3 HOH 63 463 72 HOH HOH A . C 3 HOH 64 464 73 HOH HOH A . C 3 HOH 65 465 75 HOH HOH A . C 3 HOH 66 466 76 HOH HOH A . C 3 HOH 67 467 77 HOH HOH A . C 3 HOH 68 468 78 HOH HOH A . C 3 HOH 69 469 79 HOH HOH A . C 3 HOH 70 470 80 HOH HOH A . C 3 HOH 71 471 81 HOH HOH A . C 3 HOH 72 472 82 HOH HOH A . C 3 HOH 73 473 83 HOH HOH A . C 3 HOH 74 474 85 HOH HOH A . C 3 HOH 75 475 86 HOH HOH A . C 3 HOH 76 476 87 HOH HOH A . C 3 HOH 77 477 89 HOH HOH A . C 3 HOH 78 478 90 HOH HOH A . C 3 HOH 79 479 92 HOH HOH A . C 3 HOH 80 480 93 HOH HOH A . C 3 HOH 81 481 95 HOH HOH A . C 3 HOH 82 482 96 HOH HOH A . C 3 HOH 83 483 97 HOH HOH A . C 3 HOH 84 484 98 HOH HOH A . C 3 HOH 85 485 99 HOH HOH A . C 3 HOH 86 486 102 HOH HOH A . C 3 HOH 87 487 103 HOH HOH A . C 3 HOH 88 488 104 HOH HOH A . C 3 HOH 89 489 105 HOH HOH A . C 3 HOH 90 490 106 HOH HOH A . C 3 HOH 91 491 107 HOH HOH A . C 3 HOH 92 492 108 HOH HOH A . C 3 HOH 93 493 109 HOH HOH A . C 3 HOH 94 494 110 HOH HOH A . C 3 HOH 95 495 111 HOH HOH A . C 3 HOH 96 496 113 HOH HOH A . C 3 HOH 97 497 114 HOH HOH A . C 3 HOH 98 498 115 HOH HOH A . C 3 HOH 99 499 116 HOH HOH A . C 3 HOH 100 500 117 HOH HOH A . C 3 HOH 101 501 118 HOH HOH A . C 3 HOH 102 502 119 HOH HOH A . C 3 HOH 103 503 122 HOH HOH A . C 3 HOH 104 504 123 HOH HOH A . C 3 HOH 105 505 124 HOH HOH A . C 3 HOH 106 506 125 HOH HOH A . C 3 HOH 107 507 126 HOH HOH A . C 3 HOH 108 508 127 HOH HOH A . C 3 HOH 109 509 128 HOH HOH A . C 3 HOH 110 510 129 HOH HOH A . C 3 HOH 111 511 130 HOH HOH A . C 3 HOH 112 512 131 HOH HOH A . # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MOSFLM . ? package 'Andrew G.W. Leslie' andrew@mrc-lmb.cam.ac.uk 'data reduction' http://www.mrc-lmb.cam.ac.uk/harry/mosflm/ ? ? 2 SCALA 3.2.21 7/4/2006 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 3 AMoRE . ? program 'Jorge Navaza' ccp4@ccp4.ac.uk phasing http://www.ccp4.ac.uk/ Fortran_77 ? 4 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 5 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? # _cell.length_a 73.866 _cell.length_b 94.569 _cell.length_c 60.871 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 4EM7 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.entry_id 4EM7 _symmetry.Int_Tables_number 20 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 4EM7 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.16 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 43.07 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'inhibitor soak' _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details '18-25% Peg4000, 0.2M Ammonium Acetate, 0.1M MIB pH 7, inhibitor soak, temperature 293K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date 2008-04-03 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 31-ID' _diffrn_source.pdbx_wavelength_list 1.000 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 31-ID # _reflns.entry_id 4EM7 _reflns.d_resolution_high 1.716 _reflns.d_resolution_low 23.830 _reflns.number_all 17156 _reflns.number_obs 17156 _reflns.pdbx_Rmerge_I_obs 0.100 _reflns.pdbx_netI_over_sigmaI 15.300 _reflns.pdbx_Rsym_value 0.100 _reflns.pdbx_redundancy 7.300 _reflns.percent_possible_obs 99.900 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.900 2.000 ? 18090 ? 0.476 1.500 0.476 ? 7.400 ? 2461 100.000 1 1 2.000 2.120 ? 17188 ? 0.292 2.500 0.292 ? 7.400 ? 2336 100.000 2 1 2.120 2.270 ? 16167 ? 0.218 3.200 0.218 ? 7.400 ? 2198 100.000 3 1 2.270 2.450 ? 15256 ? 0.163 4.400 0.163 ? 7.400 ? 2069 100.000 4 1 2.450 2.690 ? 13956 ? 0.131 5.400 0.131 ? 7.400 ? 1894 100.000 5 1 2.690 3.000 ? 12691 ? 0.097 7.000 0.097 ? 7.300 ? 1729 100.000 6 1 3.000 3.470 ? 11183 ? 0.077 8.200 0.077 ? 7.300 ? 1529 100.000 7 1 3.470 4.250 ? 9545 ? 0.064 9.800 0.064 ? 7.200 ? 1317 100.000 8 1 4.250 6.010 ? 7328 ? 0.060 9.600 0.060 ? 7.100 ? 1038 100.000 9 1 6.010 23.830 ? 3732 ? 0.049 12.300 0.049 ? 6.400 ? 585 97.400 10 1 # _refine.entry_id 4EM7 _refine.ls_d_res_high 1.9000 _refine.ls_d_res_low 23.8300 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.8700 _refine.ls_number_reflns_obs 17141 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1879 _refine.ls_R_factor_R_work 0.1866 _refine.ls_wR_factor_R_work 0.1888 _refine.ls_R_factor_R_free 0.2105 _refine.ls_wR_factor_R_free 0.2174 _refine.ls_percent_reflns_R_free 5.1000 _refine.ls_number_reflns_R_free 867 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 25.2291 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.1100 _refine.aniso_B[2][2] -0.0700 _refine.aniso_B[3][3] 0.1800 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9500 _refine.correlation_coeff_Fo_to_Fc_free 0.9350 _refine.overall_SU_R_Cruickshank_DPI 0.1492 _refine.overall_SU_R_free 0.1297 _refine.pdbx_overall_ESU_R 0.1490 _refine.pdbx_overall_ESU_R_Free 0.1300 _refine.overall_SU_ML 0.0850 _refine.overall_SU_B 5.6970 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.8766 _refine.B_iso_max 53.520 _refine.B_iso_min 15.190 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1485 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 20 _refine_hist.number_atoms_solvent 112 _refine_hist.number_atoms_total 1617 _refine_hist.d_res_high 1.9000 _refine_hist.d_res_low 23.8300 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 1572 0.005 0.019 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 1028 0.004 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2135 0.975 1.962 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 2521 0.782 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 201 4.794 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 69 32.700 24.348 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 271 11.808 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 9 15.350 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 245 0.057 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1792 0.003 0.020 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 310 0.001 0.020 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.9000 _refine_ls_shell.d_res_low 1.9490 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 100.0000 _refine_ls_shell.number_reflns_R_work 1088 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2000 _refine_ls_shell.R_factor_R_free 0.2520 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 59 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1147 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4EM7 _struct.title 'Crystal structure of a topoisomerase ATP inhibitor' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4EM7 _struct_keywords.text ;protein-inhibitor complex, ATP binding, structure-based drug design, antimicrobial, virtual screen, ISOMERASE-ISOMERASE INHIBITOR complex ; _struct_keywords.pdbx_keywords 'ISOMERASE/ISOMERASE INHIBITOR' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code G6TGY9_STRPN _struct_ref.pdbx_db_accession G6TGY9 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTINKDGSLTVQDHG RGMPTGMHAMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLK KIGTALKSKTGTKVTFMPDATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEAIEFHYEN ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4EM7 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 226 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession G6TGY9 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 226 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 226 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU A 22 ? ARG A 28 ? LEU A 22 ARG A 28 1 ? 7 HELX_P HELX_P2 2 PRO A 29 ? GLY A 34 ? PRO A 29 GLY A 34 1 ? 6 HELX_P HELX_P3 3 ASP A 37 ? SER A 58 ? ASP A 37 SER A 58 1 ? 22 HELX_P HELX_P4 4 HIS A 88 ? ILE A 92 ? HIS A 88 ILE A 92 5 ? 5 HELX_P HELX_P5 5 PRO A 93 ? ILE A 101 ? PRO A 93 ILE A 101 1 ? 9 HELX_P HELX_P6 6 GLY A 123 ? LEU A 130 ? GLY A 123 LEU A 130 1 ? 8 HELX_P HELX_P7 7 LYS A 189 ? LYS A 205 ? LYS A 189 LYS A 205 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 8 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? parallel B 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 154 ? PRO A 155 ? LYS A 154 PRO A 155 A 2 ALA A 143 ? GLU A 150 ? ALA A 143 GLU A 150 A 3 LYS A 160 ? THR A 164 ? LYS A 160 THR A 164 B 1 LYS A 154 ? PRO A 155 ? LYS A 154 PRO A 155 B 2 ALA A 143 ? GLU A 150 ? ALA A 143 GLU A 150 B 3 SER A 131 ? ARG A 140 ? SER A 131 ARG A 140 B 4 GLY A 171 ? PRO A 178 ? GLY A 171 PRO A 178 B 5 LEU A 74 ? ASP A 78 ? LEU A 74 ASP A 78 B 6 ARG A 63 ? ILE A 68 ? ARG A 63 ILE A 68 B 7 THR A 208 ? ASP A 213 ? THR A 208 ASP A 213 B 8 ALA A 219 ? PHE A 222 ? ALA A 219 PHE A 222 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LYS A 154 ? O LYS A 154 N GLU A 150 ? N GLU A 150 A 2 3 N VAL A 144 ? N VAL A 144 O ILE A 162 ? O ILE A 162 B 1 2 O LYS A 154 ? O LYS A 154 N GLU A 150 ? N GLU A 150 B 2 3 O TYR A 145 ? O TYR A 145 N ILE A 138 ? N ILE A 138 B 3 4 N GLU A 137 ? N GLU A 137 O LYS A 173 ? O LYS A 173 B 4 5 O THR A 172 ? O THR A 172 N ASP A 78 ? N ASP A 78 B 5 6 O THR A 75 ? O THR A 75 N THR A 67 ? N THR A 67 B 6 7 N ILE A 64 ? N ILE A 64 O THR A 208 ? O THR A 208 B 7 8 N LEU A 209 ? N LEU A 209 O PHE A 222 ? O PHE A 222 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id 0RA _struct_site.pdbx_auth_seq_id 301 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 7 _struct_site.details 'BINDING SITE FOR RESIDUE 0RA A 301' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 ASN A 51 ? ASN A 51 . ? 1_555 ? 2 AC1 7 GLU A 55 ? GLU A 55 . ? 1_555 ? 3 AC1 7 ASP A 78 ? ASP A 78 . ? 1_555 ? 4 AC1 7 GLY A 82 ? GLY A 82 . ? 1_555 ? 5 AC1 7 ARG A 140 ? ARG A 140 . ? 1_555 ? 6 AC1 7 HOH C . ? HOH A 427 . ? 1_555 ? 7 AC1 7 HOH C . ? HOH A 491 . ? 1_555 ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 88 ? ? -92.76 -153.22 2 1 HIS A 103 ? ? -93.94 40.90 3 1 LYS A 205 ? ? 70.68 142.86 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 437 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id C _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 23.2660 _pdbx_refine_tls.origin_y 32.6120 _pdbx_refine_tls.origin_z 0.5530 _pdbx_refine_tls.T[1][1] 0.0079 _pdbx_refine_tls.T[2][2] 0.0221 _pdbx_refine_tls.T[3][3] 0.0142 _pdbx_refine_tls.T[1][2] -0.0032 _pdbx_refine_tls.T[1][3] 0.0064 _pdbx_refine_tls.T[2][3] 0.0062 _pdbx_refine_tls.L[1][1] 0.2025 _pdbx_refine_tls.L[2][2] 0.8406 _pdbx_refine_tls.L[3][3] 0.4863 _pdbx_refine_tls.L[1][2] -0.1587 _pdbx_refine_tls.L[1][3] 0.0676 _pdbx_refine_tls.L[2][3] -0.0670 _pdbx_refine_tls.S[1][1] -0.0234 _pdbx_refine_tls.S[2][2] -0.0259 _pdbx_refine_tls.S[3][3] 0.0493 _pdbx_refine_tls.S[1][2] 0.0107 _pdbx_refine_tls.S[1][3] 0.0028 _pdbx_refine_tls.S[2][3] -0.0379 _pdbx_refine_tls.S[2][1] 0.0048 _pdbx_refine_tls.S[3][1] 0.0350 _pdbx_refine_tls.S[3][2] 0.0022 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 17 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 226 _pdbx_refine_tls_group.selection_details ? _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.selection ? # _phasing.method MR # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A SER 2 ? A SER 2 3 1 Y 1 A LYS 3 ? A LYS 3 4 1 Y 1 A LYS 4 ? A LYS 4 5 1 Y 1 A GLU 5 ? A GLU 5 6 1 Y 1 A ILE 6 ? A ILE 6 7 1 Y 1 A ASN 7 ? A ASN 7 8 1 Y 1 A ILE 8 ? A ILE 8 9 1 Y 1 A ASN 9 ? A ASN 9 10 1 Y 1 A ASN 10 ? A ASN 10 11 1 Y 1 A TYR 11 ? A TYR 11 12 1 Y 1 A ASN 12 ? A ASN 12 13 1 Y 1 A ASP 13 ? A ASP 13 14 1 Y 1 A ASP 14 ? A ASP 14 15 1 Y 1 A ALA 15 ? A ALA 15 16 1 Y 1 A ILE 16 ? A ILE 16 17 1 Y 1 A GLY 105 ? A GLY 105 18 1 Y 1 A GLY 106 ? A GLY 106 19 1 Y 1 A LYS 107 ? A LYS 107 20 1 Y 1 A PHE 108 ? A PHE 108 21 1 Y 1 A GLY 109 ? A GLY 109 22 1 Y 1 A GLN 110 ? A GLN 110 23 1 Y 1 A GLY 111 ? A GLY 111 24 1 Y 1 A GLY 112 ? A GLY 112 25 1 Y 1 A TYR 113 ? A TYR 113 26 1 Y 1 A LYS 114 ? A LYS 114 27 1 Y 1 A THR 115 ? A THR 115 28 1 Y 1 A SER 116 ? A SER 116 29 1 Y 1 A GLY 117 ? A GLY 117 30 1 Y 1 A GLY 118 ? A GLY 118 31 1 Y 1 A LEU 119 ? A LEU 119 32 1 Y 1 A HIS 120 ? A HIS 120 33 1 Y 1 A GLY 121 ? A GLY 121 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 0RA C1 C Y N 1 0RA C2 C Y N 2 0RA C3 C Y N 3 0RA C4 C Y N 4 0RA C5 C Y N 5 0RA C6 C Y N 6 0RA C7 C Y N 7 0RA C8 C Y N 8 0RA C9 C Y N 9 0RA C10 C Y N 10 0RA C11 C Y N 11 0RA N1 N Y N 12 0RA C12 C Y N 13 0RA N2 N Y N 14 0RA C13 C Y N 15 0RA C14 C N N 16 0RA C15 C N N 17 0RA C16 C N N 18 0RA O1 O N N 19 0RA O2 O N N 20 0RA H1 H N N 21 0RA H2 H N N 22 0RA H3 H N N 23 0RA H4 H N N 24 0RA H5 H N N 25 0RA H6 H N N 26 0RA H7 H N N 27 0RA H8 H N N 28 0RA H9 H N N 29 0RA H10 H N N 30 0RA H11 H N N 31 0RA H12 H N N 32 0RA H13 H N N 33 0RA H14 H N N 34 ALA N N N N 35 ALA CA C N S 36 ALA C C N N 37 ALA O O N N 38 ALA CB C N N 39 ALA OXT O N N 40 ALA H H N N 41 ALA H2 H N N 42 ALA HA H N N 43 ALA HB1 H N N 44 ALA HB2 H N N 45 ALA HB3 H N N 46 ALA HXT H N N 47 ARG N N N N 48 ARG CA C N S 49 ARG C C N N 50 ARG O O N N 51 ARG CB C N N 52 ARG CG C N N 53 ARG CD C N N 54 ARG NE N N N 55 ARG CZ C N N 56 ARG NH1 N N N 57 ARG NH2 N N N 58 ARG OXT O N N 59 ARG H H N N 60 ARG H2 H N N 61 ARG HA H N N 62 ARG HB2 H N N 63 ARG HB3 H N N 64 ARG HG2 H N N 65 ARG HG3 H N N 66 ARG HD2 H N N 67 ARG HD3 H N N 68 ARG HE H N N 69 ARG HH11 H N N 70 ARG HH12 H N N 71 ARG HH21 H N N 72 ARG HH22 H N N 73 ARG HXT H N N 74 ASN N N N N 75 ASN CA C N S 76 ASN C C N N 77 ASN O O N N 78 ASN CB C N N 79 ASN CG C N N 80 ASN OD1 O N N 81 ASN ND2 N N N 82 ASN OXT O N N 83 ASN H H N N 84 ASN H2 H N N 85 ASN HA H N N 86 ASN HB2 H N N 87 ASN HB3 H N N 88 ASN HD21 H N N 89 ASN HD22 H N N 90 ASN HXT H N N 91 ASP N N N N 92 ASP CA C N S 93 ASP C C N N 94 ASP O O N N 95 ASP CB C N N 96 ASP CG C N N 97 ASP OD1 O N N 98 ASP OD2 O N N 99 ASP OXT O N N 100 ASP H H N N 101 ASP H2 H N N 102 ASP HA H N N 103 ASP HB2 H N N 104 ASP HB3 H N N 105 ASP HD2 H N N 106 ASP HXT H N N 107 GLN N N N N 108 GLN CA C N S 109 GLN C C N N 110 GLN O O N N 111 GLN CB C N N 112 GLN CG C N N 113 GLN CD C N N 114 GLN OE1 O N N 115 GLN NE2 N N N 116 GLN OXT O N N 117 GLN H H N N 118 GLN H2 H N N 119 GLN HA H N N 120 GLN HB2 H N N 121 GLN HB3 H N N 122 GLN HG2 H N N 123 GLN HG3 H N N 124 GLN HE21 H N N 125 GLN HE22 H N N 126 GLN HXT H N N 127 GLU N N N N 128 GLU CA C N S 129 GLU C C N N 130 GLU O O N N 131 GLU CB C N N 132 GLU CG C N N 133 GLU CD C N N 134 GLU OE1 O N N 135 GLU OE2 O N N 136 GLU OXT O N N 137 GLU H H N N 138 GLU H2 H N N 139 GLU HA H N N 140 GLU HB2 H N N 141 GLU HB3 H N N 142 GLU HG2 H N N 143 GLU HG3 H N N 144 GLU HE2 H N N 145 GLU HXT H N N 146 GLY N N N N 147 GLY CA C N N 148 GLY C C N N 149 GLY O O N N 150 GLY OXT O N N 151 GLY H H N N 152 GLY H2 H N N 153 GLY HA2 H N N 154 GLY HA3 H N N 155 GLY HXT H N N 156 HIS N N N N 157 HIS CA C N S 158 HIS C C N N 159 HIS O O N N 160 HIS CB C N N 161 HIS CG C Y N 162 HIS ND1 N Y N 163 HIS CD2 C Y N 164 HIS CE1 C Y N 165 HIS NE2 N Y N 166 HIS OXT O N N 167 HIS H H N N 168 HIS H2 H N N 169 HIS HA H N N 170 HIS HB2 H N N 171 HIS HB3 H N N 172 HIS HD1 H N N 173 HIS HD2 H N N 174 HIS HE1 H N N 175 HIS HE2 H N N 176 HIS HXT H N N 177 HOH O O N N 178 HOH H1 H N N 179 HOH H2 H N N 180 ILE N N N N 181 ILE CA C N S 182 ILE C C N N 183 ILE O O N N 184 ILE CB C N S 185 ILE CG1 C N N 186 ILE CG2 C N N 187 ILE CD1 C N N 188 ILE OXT O N N 189 ILE H H N N 190 ILE H2 H N N 191 ILE HA H N N 192 ILE HB H N N 193 ILE HG12 H N N 194 ILE HG13 H N N 195 ILE HG21 H N N 196 ILE HG22 H N N 197 ILE HG23 H N N 198 ILE HD11 H N N 199 ILE HD12 H N N 200 ILE HD13 H N N 201 ILE HXT H N N 202 LEU N N N N 203 LEU CA C N S 204 LEU C C N N 205 LEU O O N N 206 LEU CB C N N 207 LEU CG C N N 208 LEU CD1 C N N 209 LEU CD2 C N N 210 LEU OXT O N N 211 LEU H H N N 212 LEU H2 H N N 213 LEU HA H N N 214 LEU HB2 H N N 215 LEU HB3 H N N 216 LEU HG H N N 217 LEU HD11 H N N 218 LEU HD12 H N N 219 LEU HD13 H N N 220 LEU HD21 H N N 221 LEU HD22 H N N 222 LEU HD23 H N N 223 LEU HXT H N N 224 LYS N N N N 225 LYS CA C N S 226 LYS C C N N 227 LYS O O N N 228 LYS CB C N N 229 LYS CG C N N 230 LYS CD C N N 231 LYS CE C N N 232 LYS NZ N N N 233 LYS OXT O N N 234 LYS H H N N 235 LYS H2 H N N 236 LYS HA H N N 237 LYS HB2 H N N 238 LYS HB3 H N N 239 LYS HG2 H N N 240 LYS HG3 H N N 241 LYS HD2 H N N 242 LYS HD3 H N N 243 LYS HE2 H N N 244 LYS HE3 H N N 245 LYS HZ1 H N N 246 LYS HZ2 H N N 247 LYS HZ3 H N N 248 LYS HXT H N N 249 MET N N N N 250 MET CA C N S 251 MET C C N N 252 MET O O N N 253 MET CB C N N 254 MET CG C N N 255 MET SD S N N 256 MET CE C N N 257 MET OXT O N N 258 MET H H N N 259 MET H2 H N N 260 MET HA H N N 261 MET HB2 H N N 262 MET HB3 H N N 263 MET HG2 H N N 264 MET HG3 H N N 265 MET HE1 H N N 266 MET HE2 H N N 267 MET HE3 H N N 268 MET HXT H N N 269 PHE N N N N 270 PHE CA C N S 271 PHE C C N N 272 PHE O O N N 273 PHE CB C N N 274 PHE CG C Y N 275 PHE CD1 C Y N 276 PHE CD2 C Y N 277 PHE CE1 C Y N 278 PHE CE2 C Y N 279 PHE CZ C Y N 280 PHE OXT O N N 281 PHE H H N N 282 PHE H2 H N N 283 PHE HA H N N 284 PHE HB2 H N N 285 PHE HB3 H N N 286 PHE HD1 H N N 287 PHE HD2 H N N 288 PHE HE1 H N N 289 PHE HE2 H N N 290 PHE HZ H N N 291 PHE HXT H N N 292 PRO N N N N 293 PRO CA C N S 294 PRO C C N N 295 PRO O O N N 296 PRO CB C N N 297 PRO CG C N N 298 PRO CD C N N 299 PRO OXT O N N 300 PRO H H N N 301 PRO HA H N N 302 PRO HB2 H N N 303 PRO HB3 H N N 304 PRO HG2 H N N 305 PRO HG3 H N N 306 PRO HD2 H N N 307 PRO HD3 H N N 308 PRO HXT H N N 309 SER N N N N 310 SER CA C N S 311 SER C C N N 312 SER O O N N 313 SER CB C N N 314 SER OG O N N 315 SER OXT O N N 316 SER H H N N 317 SER H2 H N N 318 SER HA H N N 319 SER HB2 H N N 320 SER HB3 H N N 321 SER HG H N N 322 SER HXT H N N 323 THR N N N N 324 THR CA C N S 325 THR C C N N 326 THR O O N N 327 THR CB C N R 328 THR OG1 O N N 329 THR CG2 C N N 330 THR OXT O N N 331 THR H H N N 332 THR H2 H N N 333 THR HA H N N 334 THR HB H N N 335 THR HG1 H N N 336 THR HG21 H N N 337 THR HG22 H N N 338 THR HG23 H N N 339 THR HXT H N N 340 TRP N N N N 341 TRP CA C N S 342 TRP C C N N 343 TRP O O N N 344 TRP CB C N N 345 TRP CG C Y N 346 TRP CD1 C Y N 347 TRP CD2 C Y N 348 TRP NE1 N Y N 349 TRP CE2 C Y N 350 TRP CE3 C Y N 351 TRP CZ2 C Y N 352 TRP CZ3 C Y N 353 TRP CH2 C Y N 354 TRP OXT O N N 355 TRP H H N N 356 TRP H2 H N N 357 TRP HA H N N 358 TRP HB2 H N N 359 TRP HB3 H N N 360 TRP HD1 H N N 361 TRP HE1 H N N 362 TRP HE3 H N N 363 TRP HZ2 H N N 364 TRP HZ3 H N N 365 TRP HH2 H N N 366 TRP HXT H N N 367 TYR N N N N 368 TYR CA C N S 369 TYR C C N N 370 TYR O O N N 371 TYR CB C N N 372 TYR CG C Y N 373 TYR CD1 C Y N 374 TYR CD2 C Y N 375 TYR CE1 C Y N 376 TYR CE2 C Y N 377 TYR CZ C Y N 378 TYR OH O N N 379 TYR OXT O N N 380 TYR H H N N 381 TYR H2 H N N 382 TYR HA H N N 383 TYR HB2 H N N 384 TYR HB3 H N N 385 TYR HD1 H N N 386 TYR HD2 H N N 387 TYR HE1 H N N 388 TYR HE2 H N N 389 TYR HH H N N 390 TYR HXT H N N 391 VAL N N N N 392 VAL CA C N S 393 VAL C C N N 394 VAL O O N N 395 VAL CB C N N 396 VAL CG1 C N N 397 VAL CG2 C N N 398 VAL OXT O N N 399 VAL H H N N 400 VAL H2 H N N 401 VAL HA H N N 402 VAL HB H N N 403 VAL HG11 H N N 404 VAL HG12 H N N 405 VAL HG13 H N N 406 VAL HG21 H N N 407 VAL HG22 H N N 408 VAL HG23 H N N 409 VAL HXT H N N 410 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 0RA C11 N1 sing Y N 1 0RA C11 C10 doub Y N 2 0RA N1 C12 sing Y N 3 0RA C10 C9 sing Y N 4 0RA C12 C9 doub Y N 5 0RA C12 N2 sing Y N 6 0RA C9 C8 sing Y N 7 0RA N2 C13 doub Y N 8 0RA C8 C7 doub Y N 9 0RA C13 C7 sing Y N 10 0RA C7 C5 sing N N 11 0RA C6 C5 doub Y N 12 0RA C6 C1 sing Y N 13 0RA C5 C4 sing Y N 14 0RA C1 C2 doub Y N 15 0RA C4 C3 doub Y N 16 0RA C2 C3 sing Y N 17 0RA C3 C14 sing N N 18 0RA C14 C15 sing N N 19 0RA C15 C16 sing N N 20 0RA C16 O1 doub N N 21 0RA C16 O2 sing N N 22 0RA C1 H1 sing N N 23 0RA C2 H2 sing N N 24 0RA C4 H3 sing N N 25 0RA C6 H4 sing N N 26 0RA C8 H5 sing N N 27 0RA C10 H6 sing N N 28 0RA C11 H7 sing N N 29 0RA N1 H8 sing N N 30 0RA C13 H9 sing N N 31 0RA C14 H10 sing N N 32 0RA C14 H11 sing N N 33 0RA C15 H12 sing N N 34 0RA C15 H13 sing N N 35 0RA O2 H14 sing N N 36 ALA N CA sing N N 37 ALA N H sing N N 38 ALA N H2 sing N N 39 ALA CA C sing N N 40 ALA CA CB sing N N 41 ALA CA HA sing N N 42 ALA C O doub N N 43 ALA C OXT sing N N 44 ALA CB HB1 sing N N 45 ALA CB HB2 sing N N 46 ALA CB HB3 sing N N 47 ALA OXT HXT sing N N 48 ARG N CA sing N N 49 ARG N H sing N N 50 ARG N H2 sing N N 51 ARG CA C sing N N 52 ARG CA CB sing N N 53 ARG CA HA sing N N 54 ARG C O doub N N 55 ARG C OXT sing N N 56 ARG CB CG sing N N 57 ARG CB HB2 sing N N 58 ARG CB HB3 sing N N 59 ARG CG CD sing N N 60 ARG CG HG2 sing N N 61 ARG CG HG3 sing N N 62 ARG CD NE sing N N 63 ARG CD HD2 sing N N 64 ARG CD HD3 sing N N 65 ARG NE CZ sing N N 66 ARG NE HE sing N N 67 ARG CZ NH1 sing N N 68 ARG CZ NH2 doub N N 69 ARG NH1 HH11 sing N N 70 ARG NH1 HH12 sing N N 71 ARG NH2 HH21 sing N N 72 ARG NH2 HH22 sing N N 73 ARG OXT HXT sing N N 74 ASN N CA sing N N 75 ASN N H sing N N 76 ASN N H2 sing N N 77 ASN CA C sing N N 78 ASN CA CB sing N N 79 ASN CA HA sing N N 80 ASN C O doub N N 81 ASN C OXT sing N N 82 ASN CB CG sing N N 83 ASN CB HB2 sing N N 84 ASN CB HB3 sing N N 85 ASN CG OD1 doub N N 86 ASN CG ND2 sing N N 87 ASN ND2 HD21 sing N N 88 ASN ND2 HD22 sing N N 89 ASN OXT HXT sing N N 90 ASP N CA sing N N 91 ASP N H sing N N 92 ASP N H2 sing N N 93 ASP CA C sing N N 94 ASP CA CB sing N N 95 ASP CA HA sing N N 96 ASP C O doub N N 97 ASP C OXT sing N N 98 ASP CB CG sing N N 99 ASP CB HB2 sing N N 100 ASP CB HB3 sing N N 101 ASP CG OD1 doub N N 102 ASP CG OD2 sing N N 103 ASP OD2 HD2 sing N N 104 ASP OXT HXT sing N N 105 GLN N CA sing N N 106 GLN N H sing N N 107 GLN N H2 sing N N 108 GLN CA C sing N N 109 GLN CA CB sing N N 110 GLN CA HA sing N N 111 GLN C O doub N N 112 GLN C OXT sing N N 113 GLN CB CG sing N N 114 GLN CB HB2 sing N N 115 GLN CB HB3 sing N N 116 GLN CG CD sing N N 117 GLN CG HG2 sing N N 118 GLN CG HG3 sing N N 119 GLN CD OE1 doub N N 120 GLN CD NE2 sing N N 121 GLN NE2 HE21 sing N N 122 GLN NE2 HE22 sing N N 123 GLN OXT HXT sing N N 124 GLU N CA sing N N 125 GLU N H sing N N 126 GLU N H2 sing N N 127 GLU CA C sing N N 128 GLU CA CB sing N N 129 GLU CA HA sing N N 130 GLU C O doub N N 131 GLU C OXT sing N N 132 GLU CB CG sing N N 133 GLU CB HB2 sing N N 134 GLU CB HB3 sing N N 135 GLU CG CD sing N N 136 GLU CG HG2 sing N N 137 GLU CG HG3 sing N N 138 GLU CD OE1 doub N N 139 GLU CD OE2 sing N N 140 GLU OE2 HE2 sing N N 141 GLU OXT HXT sing N N 142 GLY N CA sing N N 143 GLY N H sing N N 144 GLY N H2 sing N N 145 GLY CA C sing N N 146 GLY CA HA2 sing N N 147 GLY CA HA3 sing N N 148 GLY C O doub N N 149 GLY C OXT sing N N 150 GLY OXT HXT sing N N 151 HIS N CA sing N N 152 HIS N H sing N N 153 HIS N H2 sing N N 154 HIS CA C sing N N 155 HIS CA CB sing N N 156 HIS CA HA sing N N 157 HIS C O doub N N 158 HIS C OXT sing N N 159 HIS CB CG sing N N 160 HIS CB HB2 sing N N 161 HIS CB HB3 sing N N 162 HIS CG ND1 sing Y N 163 HIS CG CD2 doub Y N 164 HIS ND1 CE1 doub Y N 165 HIS ND1 HD1 sing N N 166 HIS CD2 NE2 sing Y N 167 HIS CD2 HD2 sing N N 168 HIS CE1 NE2 sing Y N 169 HIS CE1 HE1 sing N N 170 HIS NE2 HE2 sing N N 171 HIS OXT HXT sing N N 172 HOH O H1 sing N N 173 HOH O H2 sing N N 174 ILE N CA sing N N 175 ILE N H sing N N 176 ILE N H2 sing N N 177 ILE CA C sing N N 178 ILE CA CB sing N N 179 ILE CA HA sing N N 180 ILE C O doub N N 181 ILE C OXT sing N N 182 ILE CB CG1 sing N N 183 ILE CB CG2 sing N N 184 ILE CB HB sing N N 185 ILE CG1 CD1 sing N N 186 ILE CG1 HG12 sing N N 187 ILE CG1 HG13 sing N N 188 ILE CG2 HG21 sing N N 189 ILE CG2 HG22 sing N N 190 ILE CG2 HG23 sing N N 191 ILE CD1 HD11 sing N N 192 ILE CD1 HD12 sing N N 193 ILE CD1 HD13 sing N N 194 ILE OXT HXT sing N N 195 LEU N CA sing N N 196 LEU N H sing N N 197 LEU N H2 sing N N 198 LEU CA C sing N N 199 LEU CA CB sing N N 200 LEU CA HA sing N N 201 LEU C O doub N N 202 LEU C OXT sing N N 203 LEU CB CG sing N N 204 LEU CB HB2 sing N N 205 LEU CB HB3 sing N N 206 LEU CG CD1 sing N N 207 LEU CG CD2 sing N N 208 LEU CG HG sing N N 209 LEU CD1 HD11 sing N N 210 LEU CD1 HD12 sing N N 211 LEU CD1 HD13 sing N N 212 LEU CD2 HD21 sing N N 213 LEU CD2 HD22 sing N N 214 LEU CD2 HD23 sing N N 215 LEU OXT HXT sing N N 216 LYS N CA sing N N 217 LYS N H sing N N 218 LYS N H2 sing N N 219 LYS CA C sing N N 220 LYS CA CB sing N N 221 LYS CA HA sing N N 222 LYS C O doub N N 223 LYS C OXT sing N N 224 LYS CB CG sing N N 225 LYS CB HB2 sing N N 226 LYS CB HB3 sing N N 227 LYS CG CD sing N N 228 LYS CG HG2 sing N N 229 LYS CG HG3 sing N N 230 LYS CD CE sing N N 231 LYS CD HD2 sing N N 232 LYS CD HD3 sing N N 233 LYS CE NZ sing N N 234 LYS CE HE2 sing N N 235 LYS CE HE3 sing N N 236 LYS NZ HZ1 sing N N 237 LYS NZ HZ2 sing N N 238 LYS NZ HZ3 sing N N 239 LYS OXT HXT sing N N 240 MET N CA sing N N 241 MET N H sing N N 242 MET N H2 sing N N 243 MET CA C sing N N 244 MET CA CB sing N N 245 MET CA HA sing N N 246 MET C O doub N N 247 MET C OXT sing N N 248 MET CB CG sing N N 249 MET CB HB2 sing N N 250 MET CB HB3 sing N N 251 MET CG SD sing N N 252 MET CG HG2 sing N N 253 MET CG HG3 sing N N 254 MET SD CE sing N N 255 MET CE HE1 sing N N 256 MET CE HE2 sing N N 257 MET CE HE3 sing N N 258 MET OXT HXT sing N N 259 PHE N CA sing N N 260 PHE N H sing N N 261 PHE N H2 sing N N 262 PHE CA C sing N N 263 PHE CA CB sing N N 264 PHE CA HA sing N N 265 PHE C O doub N N 266 PHE C OXT sing N N 267 PHE CB CG sing N N 268 PHE CB HB2 sing N N 269 PHE CB HB3 sing N N 270 PHE CG CD1 doub Y N 271 PHE CG CD2 sing Y N 272 PHE CD1 CE1 sing Y N 273 PHE CD1 HD1 sing N N 274 PHE CD2 CE2 doub Y N 275 PHE CD2 HD2 sing N N 276 PHE CE1 CZ doub Y N 277 PHE CE1 HE1 sing N N 278 PHE CE2 CZ sing Y N 279 PHE CE2 HE2 sing N N 280 PHE CZ HZ sing N N 281 PHE OXT HXT sing N N 282 PRO N CA sing N N 283 PRO N CD sing N N 284 PRO N H sing N N 285 PRO CA C sing N N 286 PRO CA CB sing N N 287 PRO CA HA sing N N 288 PRO C O doub N N 289 PRO C OXT sing N N 290 PRO CB CG sing N N 291 PRO CB HB2 sing N N 292 PRO CB HB3 sing N N 293 PRO CG CD sing N N 294 PRO CG HG2 sing N N 295 PRO CG HG3 sing N N 296 PRO CD HD2 sing N N 297 PRO CD HD3 sing N N 298 PRO OXT HXT sing N N 299 SER N CA sing N N 300 SER N H sing N N 301 SER N H2 sing N N 302 SER CA C sing N N 303 SER CA CB sing N N 304 SER CA HA sing N N 305 SER C O doub N N 306 SER C OXT sing N N 307 SER CB OG sing N N 308 SER CB HB2 sing N N 309 SER CB HB3 sing N N 310 SER OG HG sing N N 311 SER OXT HXT sing N N 312 THR N CA sing N N 313 THR N H sing N N 314 THR N H2 sing N N 315 THR CA C sing N N 316 THR CA CB sing N N 317 THR CA HA sing N N 318 THR C O doub N N 319 THR C OXT sing N N 320 THR CB OG1 sing N N 321 THR CB CG2 sing N N 322 THR CB HB sing N N 323 THR OG1 HG1 sing N N 324 THR CG2 HG21 sing N N 325 THR CG2 HG22 sing N N 326 THR CG2 HG23 sing N N 327 THR OXT HXT sing N N 328 TRP N CA sing N N 329 TRP N H sing N N 330 TRP N H2 sing N N 331 TRP CA C sing N N 332 TRP CA CB sing N N 333 TRP CA HA sing N N 334 TRP C O doub N N 335 TRP C OXT sing N N 336 TRP CB CG sing N N 337 TRP CB HB2 sing N N 338 TRP CB HB3 sing N N 339 TRP CG CD1 doub Y N 340 TRP CG CD2 sing Y N 341 TRP CD1 NE1 sing Y N 342 TRP CD1 HD1 sing N N 343 TRP CD2 CE2 doub Y N 344 TRP CD2 CE3 sing Y N 345 TRP NE1 CE2 sing Y N 346 TRP NE1 HE1 sing N N 347 TRP CE2 CZ2 sing Y N 348 TRP CE3 CZ3 doub Y N 349 TRP CE3 HE3 sing N N 350 TRP CZ2 CH2 doub Y N 351 TRP CZ2 HZ2 sing N N 352 TRP CZ3 CH2 sing Y N 353 TRP CZ3 HZ3 sing N N 354 TRP CH2 HH2 sing N N 355 TRP OXT HXT sing N N 356 TYR N CA sing N N 357 TYR N H sing N N 358 TYR N H2 sing N N 359 TYR CA C sing N N 360 TYR CA CB sing N N 361 TYR CA HA sing N N 362 TYR C O doub N N 363 TYR C OXT sing N N 364 TYR CB CG sing N N 365 TYR CB HB2 sing N N 366 TYR CB HB3 sing N N 367 TYR CG CD1 doub Y N 368 TYR CG CD2 sing Y N 369 TYR CD1 CE1 sing Y N 370 TYR CD1 HD1 sing N N 371 TYR CD2 CE2 doub Y N 372 TYR CD2 HD2 sing N N 373 TYR CE1 CZ doub Y N 374 TYR CE1 HE1 sing N N 375 TYR CE2 CZ sing Y N 376 TYR CE2 HE2 sing N N 377 TYR CZ OH sing N N 378 TYR OH HH sing N N 379 TYR OXT HXT sing N N 380 VAL N CA sing N N 381 VAL N H sing N N 382 VAL N H2 sing N N 383 VAL CA C sing N N 384 VAL CA CB sing N N 385 VAL CA HA sing N N 386 VAL C O doub N N 387 VAL C OXT sing N N 388 VAL CB CG1 sing N N 389 VAL CB CG2 sing N N 390 VAL CB HB sing N N 391 VAL CG1 HG11 sing N N 392 VAL CG1 HG12 sing N N 393 VAL CG1 HG13 sing N N 394 VAL CG2 HG21 sing N N 395 VAL CG2 HG22 sing N N 396 VAL CG2 HG23 sing N N 397 VAL OXT HXT sing N N 398 # _atom_sites.entry_id 4EM7 _atom_sites.fract_transf_matrix[1][1] 0.013538 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010574 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016428 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_