data_4ENO # _entry.id 4ENO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.320 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4ENO RCSB RCSB071844 WWPDB D_1000071844 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4ENO _pdbx_database_status.recvd_initial_deposition_date 2012-04-13 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kim, M.-S.' 1 'Shin, D.-H.' 2 # _citation.id primary _citation.title 'Structure of Nm23-H1 under oxidative conditions.' _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_volume 69 _citation.page_first 669 _citation.page_last 680 _citation.year 2013 _citation.journal_id_ASTM ABCRE6 _citation.country US _citation.journal_id_ISSN 1399-0047 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23519676 _citation.pdbx_database_id_DOI 10.1107/S0907444913001194 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kim, M.S.' 1 ? primary 'Jeong, J.' 2 ? primary 'Jeong, J.' 3 ? primary 'Shin, D.H.' 4 ? primary 'Lee, K.J.' 5 ? # _cell.entry_id 4ENO _cell.length_a 106.768 _cell.length_b 106.768 _cell.length_c 106.768 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ENO _symmetry.space_group_name_H-M 'P 21 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Nucleoside diphosphate kinase A' 17170.721 2 2.7.4.6 ? ? ? 2 non-polymer syn 'PHOSPHATE ION' 94.971 2 ? ? ? ? 3 water nat water 18.015 55 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;NDK A, NDP kinase A, Granzyme A-activated DNase, GAAD, Metastasis inhibition factor nm23, Tumor metastatic process-associated protein, nm23-H1 ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEG LNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE ; _entity_poly.pdbx_seq_one_letter_code_can ;MANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEG LNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 ASN n 1 4 CYS n 1 5 GLU n 1 6 ARG n 1 7 THR n 1 8 PHE n 1 9 ILE n 1 10 ALA n 1 11 ILE n 1 12 LYS n 1 13 PRO n 1 14 ASP n 1 15 GLY n 1 16 VAL n 1 17 GLN n 1 18 ARG n 1 19 GLY n 1 20 LEU n 1 21 VAL n 1 22 GLY n 1 23 GLU n 1 24 ILE n 1 25 ILE n 1 26 LYS n 1 27 ARG n 1 28 PHE n 1 29 GLU n 1 30 GLN n 1 31 LYS n 1 32 GLY n 1 33 PHE n 1 34 ARG n 1 35 LEU n 1 36 VAL n 1 37 GLY n 1 38 LEU n 1 39 LYS n 1 40 PHE n 1 41 MET n 1 42 GLN n 1 43 ALA n 1 44 SER n 1 45 GLU n 1 46 ASP n 1 47 LEU n 1 48 LEU n 1 49 LYS n 1 50 GLU n 1 51 HIS n 1 52 TYR n 1 53 VAL n 1 54 ASP n 1 55 LEU n 1 56 LYS n 1 57 ASP n 1 58 ARG n 1 59 PRO n 1 60 PHE n 1 61 PHE n 1 62 ALA n 1 63 GLY n 1 64 LEU n 1 65 VAL n 1 66 LYS n 1 67 TYR n 1 68 MET n 1 69 HIS n 1 70 SER n 1 71 GLY n 1 72 PRO n 1 73 VAL n 1 74 VAL n 1 75 ALA n 1 76 MET n 1 77 VAL n 1 78 TRP n 1 79 GLU n 1 80 GLY n 1 81 LEU n 1 82 ASN n 1 83 VAL n 1 84 VAL n 1 85 LYS n 1 86 THR n 1 87 GLY n 1 88 ARG n 1 89 VAL n 1 90 MET n 1 91 LEU n 1 92 GLY n 1 93 GLU n 1 94 THR n 1 95 ASN n 1 96 PRO n 1 97 ALA n 1 98 ASP n 1 99 SER n 1 100 LYS n 1 101 PRO n 1 102 GLY n 1 103 THR n 1 104 ILE n 1 105 ARG n 1 106 GLY n 1 107 ASP n 1 108 PHE n 1 109 CYS n 1 110 ILE n 1 111 GLN n 1 112 VAL n 1 113 GLY n 1 114 ARG n 1 115 ASN n 1 116 ILE n 1 117 ILE n 1 118 HIS n 1 119 GLY n 1 120 SER n 1 121 ASP n 1 122 SER n 1 123 VAL n 1 124 GLU n 1 125 SER n 1 126 ALA n 1 127 GLU n 1 128 LYS n 1 129 GLU n 1 130 ILE n 1 131 GLY n 1 132 LEU n 1 133 TRP n 1 134 PHE n 1 135 HIS n 1 136 PRO n 1 137 GLU n 1 138 GLU n 1 139 LEU n 1 140 VAL n 1 141 ASP n 1 142 TYR n 1 143 THR n 1 144 SER n 1 145 CYS n 1 146 ALA n 1 147 GLN n 1 148 ASN n 1 149 TRP n 1 150 ILE n 1 151 TYR n 1 152 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'NME1, NDPKA, NM23' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code NDKA_HUMAN _struct_ref.pdbx_db_accession P15531 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEG LNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4ENO A 1 ? 152 ? P15531 1 ? 152 ? 1 152 2 1 4ENO B 1 ? 152 ? P15531 1 ? 152 ? 1 152 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4ENO _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.95 _exptl_crystal.density_percent_sol 58.35 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 296 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.4 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '2.0M sodium potassium phosphate pH 6.4, VAPOR DIFFUSION, HANGING DROP, temperature 296K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2009-04-02 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PAL/PLS BEAMLINE 4A' _diffrn_source.pdbx_synchrotron_site PAL/PLS _diffrn_source.pdbx_synchrotron_beamline 4A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4ENO _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 47.755 _reflns.d_resolution_high 2.80 _reflns.number_obs 10255 _reflns.number_all 10277 _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 43.6 _reflns.pdbx_redundancy ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.80 _reflns_shell.d_res_low ? _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4ENO _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 10255 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.36 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 47.748 _refine.ls_d_res_high 2.800 _refine.ls_percent_reflns_obs 99.89 _refine.ls_R_factor_obs 0.1895 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1823 _refine.ls_R_factor_R_free 0.2559 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.95 _refine.ls_number_reflns_R_free 1020 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 36.7 _refine.aniso_B[1][1] 0.00 _refine.aniso_B[2][2] 0.00 _refine.aniso_B[3][3] 0.00 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details 'BULK SOLVENT MODEL USED' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.36 _refine.pdbx_overall_phase_error 24.94 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 4ENO _refine_analyze.Luzzati_coordinate_error_obs 0.32 _refine_analyze.Luzzati_sigma_a_obs 0.37 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.42 _refine_analyze.Luzzati_sigma_a_free 0.46 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2372 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 55 _refine_hist.number_atoms_total 2437 _refine_hist.d_res_high 2.800 _refine_hist.d_res_low 47.748 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.009 ? ? 2435 'X-RAY DIFFRACTION' ? f_angle_d 1.315 ? ? 3281 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 17.047 ? ? 899 'X-RAY DIFFRACTION' ? f_chiral_restr 0.097 ? ? 349 'X-RAY DIFFRACTION' ? f_plane_restr 0.005 ? ? 423 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 2.8000 2.9476 1304 0.2450 100.00 0.3490 . . 158 . . 'X-RAY DIFFRACTION' . 2.9476 3.1322 1287 0.2023 100.00 0.2711 . . 146 . . 'X-RAY DIFFRACTION' . 3.1322 3.3740 1299 0.2020 100.00 0.2936 . . 141 . . 'X-RAY DIFFRACTION' . 3.3740 3.7135 1316 0.1777 100.00 0.2545 . . 138 . . 'X-RAY DIFFRACTION' . 3.7135 4.2505 1307 0.1594 100.00 0.2551 . . 151 . . 'X-RAY DIFFRACTION' . 4.2505 5.3541 1353 0.1547 100.00 0.2015 . . 133 . . 'X-RAY DIFFRACTION' . 5.3541 47.7550 1369 0.1886 99.00 0.2372 . . 153 . . # loop_ _pdbx_xplor_file.pdbx_refine_id _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file 'X-RAY DIFFRACTION' 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 dna-rna_rep.param dna-rna.top 'X-RAY DIFFRACTION' 3 water_rep.param water.top 'X-RAY DIFFRACTION' 4 ion.param ion.top 'X-RAY DIFFRACTION' 5 carbohydrate.param carbohydrate.top # _struct_ncs_dom.id 1 _struct_ncs_dom.details ? _struct_ncs_dom.pdbx_ens_id 1 # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 4ENO _struct.title 'Crystal structure of oxidized human nm23-H1' _struct.pdbx_descriptor 'Nucleoside diphosphate kinase A (E.C.2.7.4.6)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4ENO _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text 'Ferredoxin-like/Alpha, beta proteins, nucleoside diphosphate kinase, TRANSFERASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 MET A 1 ? CYS A 4 ? MET A 1 CYS A 4 5 ? 4 HELX_P HELX_P2 2 LYS A 12 ? ARG A 18 ? LYS A 12 ARG A 18 1 ? 7 HELX_P HELX_P3 3 LEU A 20 ? GLY A 32 ? LEU A 20 GLY A 32 1 ? 13 HELX_P HELX_P4 4 SER A 44 ? TYR A 52 ? SER A 44 TYR A 52 1 ? 9 HELX_P HELX_P5 5 VAL A 53 ? LYS A 56 ? VAL A 53 LYS A 56 5 ? 4 HELX_P HELX_P6 6 PHE A 60 ? SER A 70 ? PHE A 60 SER A 70 1 ? 11 HELX_P HELX_P7 7 ASN A 82 ? GLY A 92 ? ASN A 82 GLY A 92 1 ? 11 HELX_P HELX_P8 8 THR A 103 ? CYS A 109 ? THR A 103 CYS A 109 1 ? 7 HELX_P HELX_P9 9 SER A 122 ? PHE A 134 ? SER A 122 PHE A 134 1 ? 13 HELX_P HELX_P10 10 HIS A 135 ? LEU A 139 ? HIS A 135 LEU A 139 5 ? 5 HELX_P HELX_P11 11 MET B 1 ? CYS B 4 ? MET B 1 CYS B 4 5 ? 4 HELX_P HELX_P12 12 LYS B 12 ? ARG B 18 ? LYS B 12 ARG B 18 1 ? 7 HELX_P HELX_P13 13 LEU B 20 ? GLY B 32 ? LEU B 20 GLY B 32 1 ? 13 HELX_P HELX_P14 14 SER B 44 ? TYR B 52 ? SER B 44 TYR B 52 1 ? 9 HELX_P HELX_P15 15 VAL B 53 ? LYS B 56 ? VAL B 53 LYS B 56 5 ? 4 HELX_P HELX_P16 16 PHE B 60 ? SER B 70 ? PHE B 60 SER B 70 1 ? 11 HELX_P HELX_P17 17 ASN B 82 ? GLY B 92 ? ASN B 82 GLY B 92 1 ? 11 HELX_P HELX_P18 18 THR B 103 ? CYS B 109 ? THR B 103 CYS B 109 1 ? 7 HELX_P HELX_P19 19 SER B 122 ? PHE B 134 ? SER B 122 PHE B 134 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 4 SG ? ? ? 1_555 A CYS 145 SG ? ? A CYS 4 A CYS 145 1_555 ? ? ? ? ? ? ? 2.038 ? disulf2 disulf ? ? B CYS 4 SG ? ? ? 1_555 B CYS 145 SG ? ? B CYS 4 B CYS 145 1_555 ? ? ? ? ? ? ? 2.039 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 34 ? MET A 41 ? ARG A 34 MET A 41 A 2 VAL A 73 ? GLU A 79 ? VAL A 73 GLU A 79 A 3 ARG A 6 ? ILE A 11 ? ARG A 6 ILE A 11 A 4 ILE A 117 ? GLY A 119 ? ILE A 117 GLY A 119 B 1 ARG B 34 ? MET B 41 ? ARG B 34 MET B 41 B 2 VAL B 73 ? GLU B 79 ? VAL B 73 GLU B 79 B 3 ARG B 6 ? ILE B 11 ? ARG B 6 ILE B 11 B 4 ILE B 117 ? GLY B 119 ? ILE B 117 GLY B 119 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LYS A 39 ? N LYS A 39 O ALA A 75 ? O ALA A 75 A 2 3 O MET A 76 ? O MET A 76 N ILE A 9 ? N ILE A 9 A 3 4 N ALA A 10 ? N ALA A 10 O HIS A 118 ? O HIS A 118 B 1 2 N ARG B 34 ? N ARG B 34 O GLU B 79 ? O GLU B 79 B 2 3 O TRP B 78 ? O TRP B 78 N THR B 7 ? N THR B 7 B 3 4 N ALA B 10 ? N ALA B 10 O HIS B 118 ? O HIS B 118 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE PO4 A 201' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE PO4 B 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 LYS A 12 ? LYS A 12 . ? 1_555 ? 2 AC1 3 TYR A 52 ? TYR A 52 . ? 1_555 ? 3 AC1 3 HIS A 118 ? HIS A 118 . ? 1_555 ? 4 AC2 4 LYS B 12 ? LYS B 12 . ? 1_555 ? 5 AC2 4 TYR B 52 ? TYR B 52 . ? 1_555 ? 6 AC2 4 HIS B 118 ? HIS B 118 . ? 1_555 ? 7 AC2 4 HOH F . ? HOH B 304 . ? 1_555 ? # _database_PDB_matrix.entry_id 4ENO _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4ENO _atom_sites.fract_transf_matrix[1][1] 0.009366 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009366 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009366 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 ALA 2 2 2 ALA ALA A . n A 1 3 ASN 3 3 3 ASN ASN A . n A 1 4 CYS 4 4 4 CYS CYS A . n A 1 5 GLU 5 5 5 GLU GLU A . n A 1 6 ARG 6 6 6 ARG ARG A . n A 1 7 THR 7 7 7 THR THR A . n A 1 8 PHE 8 8 8 PHE PHE A . n A 1 9 ILE 9 9 9 ILE ILE A . n A 1 10 ALA 10 10 10 ALA ALA A . n A 1 11 ILE 11 11 11 ILE ILE A . n A 1 12 LYS 12 12 12 LYS LYS A . n A 1 13 PRO 13 13 13 PRO PRO A . n A 1 14 ASP 14 14 14 ASP ASP A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 VAL 16 16 16 VAL VAL A . n A 1 17 GLN 17 17 17 GLN GLN A . n A 1 18 ARG 18 18 18 ARG ARG A . n A 1 19 GLY 19 19 19 GLY GLY A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 VAL 21 21 21 VAL VAL A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 GLU 23 23 23 GLU GLU A . n A 1 24 ILE 24 24 24 ILE ILE A . n A 1 25 ILE 25 25 25 ILE ILE A . n A 1 26 LYS 26 26 26 LYS LYS A . n A 1 27 ARG 27 27 27 ARG ARG A . n A 1 28 PHE 28 28 28 PHE PHE A . n A 1 29 GLU 29 29 29 GLU GLU A . n A 1 30 GLN 30 30 30 GLN GLN A . n A 1 31 LYS 31 31 31 LYS LYS A . n A 1 32 GLY 32 32 32 GLY GLY A . n A 1 33 PHE 33 33 33 PHE PHE A . n A 1 34 ARG 34 34 34 ARG ARG A . n A 1 35 LEU 35 35 35 LEU LEU A . n A 1 36 VAL 36 36 36 VAL VAL A . n A 1 37 GLY 37 37 37 GLY GLY A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 LYS 39 39 39 LYS LYS A . n A 1 40 PHE 40 40 40 PHE PHE A . n A 1 41 MET 41 41 41 MET MET A . n A 1 42 GLN 42 42 42 GLN GLN A . n A 1 43 ALA 43 43 43 ALA ALA A . n A 1 44 SER 44 44 44 SER SER A . n A 1 45 GLU 45 45 45 GLU GLU A . n A 1 46 ASP 46 46 46 ASP ASP A . n A 1 47 LEU 47 47 47 LEU LEU A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 LYS 49 49 49 LYS LYS A . n A 1 50 GLU 50 50 50 GLU GLU A . n A 1 51 HIS 51 51 51 HIS HIS A . n A 1 52 TYR 52 52 52 TYR TYR A . n A 1 53 VAL 53 53 53 VAL VAL A . n A 1 54 ASP 54 54 54 ASP ASP A . n A 1 55 LEU 55 55 55 LEU LEU A . n A 1 56 LYS 56 56 56 LYS LYS A . n A 1 57 ASP 57 57 57 ASP ASP A . n A 1 58 ARG 58 58 58 ARG ARG A . n A 1 59 PRO 59 59 59 PRO PRO A . n A 1 60 PHE 60 60 60 PHE PHE A . n A 1 61 PHE 61 61 61 PHE PHE A . n A 1 62 ALA 62 62 62 ALA ALA A . n A 1 63 GLY 63 63 63 GLY GLY A . n A 1 64 LEU 64 64 64 LEU LEU A . n A 1 65 VAL 65 65 65 VAL VAL A . n A 1 66 LYS 66 66 66 LYS LYS A . n A 1 67 TYR 67 67 67 TYR TYR A . n A 1 68 MET 68 68 68 MET MET A . n A 1 69 HIS 69 69 69 HIS HIS A . n A 1 70 SER 70 70 70 SER SER A . n A 1 71 GLY 71 71 71 GLY GLY A . n A 1 72 PRO 72 72 72 PRO PRO A . n A 1 73 VAL 73 73 73 VAL VAL A . n A 1 74 VAL 74 74 74 VAL VAL A . n A 1 75 ALA 75 75 75 ALA ALA A . n A 1 76 MET 76 76 76 MET MET A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 TRP 78 78 78 TRP TRP A . n A 1 79 GLU 79 79 79 GLU GLU A . n A 1 80 GLY 80 80 80 GLY GLY A . n A 1 81 LEU 81 81 81 LEU LEU A . n A 1 82 ASN 82 82 82 ASN ASN A . n A 1 83 VAL 83 83 83 VAL VAL A . n A 1 84 VAL 84 84 84 VAL VAL A . n A 1 85 LYS 85 85 85 LYS LYS A . n A 1 86 THR 86 86 86 THR THR A . n A 1 87 GLY 87 87 87 GLY GLY A . n A 1 88 ARG 88 88 88 ARG ARG A . n A 1 89 VAL 89 89 89 VAL VAL A . n A 1 90 MET 90 90 90 MET MET A . n A 1 91 LEU 91 91 91 LEU LEU A . n A 1 92 GLY 92 92 92 GLY GLY A . n A 1 93 GLU 93 93 93 GLU GLU A . n A 1 94 THR 94 94 94 THR THR A . n A 1 95 ASN 95 95 95 ASN ASN A . n A 1 96 PRO 96 96 96 PRO PRO A . n A 1 97 ALA 97 97 97 ALA ALA A . n A 1 98 ASP 98 98 98 ASP ASP A . n A 1 99 SER 99 99 99 SER SER A . n A 1 100 LYS 100 100 100 LYS LYS A . n A 1 101 PRO 101 101 101 PRO PRO A . n A 1 102 GLY 102 102 102 GLY GLY A . n A 1 103 THR 103 103 103 THR THR A . n A 1 104 ILE 104 104 104 ILE ILE A . n A 1 105 ARG 105 105 105 ARG ARG A . n A 1 106 GLY 106 106 106 GLY GLY A . n A 1 107 ASP 107 107 107 ASP ASP A . n A 1 108 PHE 108 108 108 PHE PHE A . n A 1 109 CYS 109 109 109 CYS CYS A . n A 1 110 ILE 110 110 110 ILE ILE A . n A 1 111 GLN 111 111 111 GLN GLN A . n A 1 112 VAL 112 112 112 VAL VAL A . n A 1 113 GLY 113 113 113 GLY GLY A . n A 1 114 ARG 114 114 114 ARG ARG A . n A 1 115 ASN 115 115 115 ASN ASN A . n A 1 116 ILE 116 116 116 ILE ILE A . n A 1 117 ILE 117 117 117 ILE ILE A . n A 1 118 HIS 118 118 118 HIS HIS A . n A 1 119 GLY 119 119 119 GLY GLY A . n A 1 120 SER 120 120 120 SER SER A . n A 1 121 ASP 121 121 121 ASP ASP A . n A 1 122 SER 122 122 122 SER SER A . n A 1 123 VAL 123 123 123 VAL VAL A . n A 1 124 GLU 124 124 124 GLU GLU A . n A 1 125 SER 125 125 125 SER SER A . n A 1 126 ALA 126 126 126 ALA ALA A . n A 1 127 GLU 127 127 127 GLU GLU A . n A 1 128 LYS 128 128 128 LYS LYS A . n A 1 129 GLU 129 129 129 GLU GLU A . n A 1 130 ILE 130 130 130 ILE ILE A . n A 1 131 GLY 131 131 131 GLY GLY A . n A 1 132 LEU 132 132 132 LEU LEU A . n A 1 133 TRP 133 133 133 TRP TRP A . n A 1 134 PHE 134 134 134 PHE PHE A . n A 1 135 HIS 135 135 135 HIS HIS A . n A 1 136 PRO 136 136 136 PRO PRO A . n A 1 137 GLU 137 137 137 GLU GLU A . n A 1 138 GLU 138 138 138 GLU GLU A . n A 1 139 LEU 139 139 139 LEU LEU A . n A 1 140 VAL 140 140 140 VAL VAL A . n A 1 141 ASP 141 141 141 ASP ASP A . n A 1 142 TYR 142 142 142 TYR TYR A . n A 1 143 THR 143 143 143 THR THR A . n A 1 144 SER 144 144 144 SER SER A . n A 1 145 CYS 145 145 145 CYS CYS A . n A 1 146 ALA 146 146 146 ALA ALA A . n A 1 147 GLN 147 147 147 GLN GLN A . n A 1 148 ASN 148 148 148 ASN ASN A . n A 1 149 TRP 149 149 149 TRP TRP A . n A 1 150 ILE 150 150 150 ILE ILE A . n A 1 151 TYR 151 151 151 TYR TYR A . n A 1 152 GLU 152 152 ? ? ? A . n B 1 1 MET 1 1 1 MET MET B . n B 1 2 ALA 2 2 2 ALA ALA B . n B 1 3 ASN 3 3 3 ASN ASN B . n B 1 4 CYS 4 4 4 CYS CYS B . n B 1 5 GLU 5 5 5 GLU GLU B . n B 1 6 ARG 6 6 6 ARG ARG B . n B 1 7 THR 7 7 7 THR THR B . n B 1 8 PHE 8 8 8 PHE PHE B . n B 1 9 ILE 9 9 9 ILE ILE B . n B 1 10 ALA 10 10 10 ALA ALA B . n B 1 11 ILE 11 11 11 ILE ILE B . n B 1 12 LYS 12 12 12 LYS LYS B . n B 1 13 PRO 13 13 13 PRO PRO B . n B 1 14 ASP 14 14 14 ASP ASP B . n B 1 15 GLY 15 15 15 GLY GLY B . n B 1 16 VAL 16 16 16 VAL VAL B . n B 1 17 GLN 17 17 17 GLN GLN B . n B 1 18 ARG 18 18 18 ARG ARG B . n B 1 19 GLY 19 19 19 GLY GLY B . n B 1 20 LEU 20 20 20 LEU LEU B . n B 1 21 VAL 21 21 21 VAL VAL B . n B 1 22 GLY 22 22 22 GLY GLY B . n B 1 23 GLU 23 23 23 GLU GLU B . n B 1 24 ILE 24 24 24 ILE ILE B . n B 1 25 ILE 25 25 25 ILE ILE B . n B 1 26 LYS 26 26 26 LYS LYS B . n B 1 27 ARG 27 27 27 ARG ARG B . n B 1 28 PHE 28 28 28 PHE PHE B . n B 1 29 GLU 29 29 29 GLU GLU B . n B 1 30 GLN 30 30 30 GLN GLN B . n B 1 31 LYS 31 31 31 LYS LYS B . n B 1 32 GLY 32 32 32 GLY GLY B . n B 1 33 PHE 33 33 33 PHE PHE B . n B 1 34 ARG 34 34 34 ARG ARG B . n B 1 35 LEU 35 35 35 LEU LEU B . n B 1 36 VAL 36 36 36 VAL VAL B . n B 1 37 GLY 37 37 37 GLY GLY B . n B 1 38 LEU 38 38 38 LEU LEU B . n B 1 39 LYS 39 39 39 LYS LYS B . n B 1 40 PHE 40 40 40 PHE PHE B . n B 1 41 MET 41 41 41 MET MET B . n B 1 42 GLN 42 42 42 GLN GLN B . n B 1 43 ALA 43 43 43 ALA ALA B . n B 1 44 SER 44 44 44 SER SER B . n B 1 45 GLU 45 45 45 GLU GLU B . n B 1 46 ASP 46 46 46 ASP ASP B . n B 1 47 LEU 47 47 47 LEU LEU B . n B 1 48 LEU 48 48 48 LEU LEU B . n B 1 49 LYS 49 49 49 LYS LYS B . n B 1 50 GLU 50 50 50 GLU GLU B . n B 1 51 HIS 51 51 51 HIS HIS B . n B 1 52 TYR 52 52 52 TYR TYR B . n B 1 53 VAL 53 53 53 VAL VAL B . n B 1 54 ASP 54 54 54 ASP ASP B . n B 1 55 LEU 55 55 55 LEU LEU B . n B 1 56 LYS 56 56 56 LYS LYS B . n B 1 57 ASP 57 57 57 ASP ASP B . n B 1 58 ARG 58 58 58 ARG ARG B . n B 1 59 PRO 59 59 59 PRO PRO B . n B 1 60 PHE 60 60 60 PHE PHE B . n B 1 61 PHE 61 61 61 PHE PHE B . n B 1 62 ALA 62 62 62 ALA ALA B . n B 1 63 GLY 63 63 63 GLY GLY B . n B 1 64 LEU 64 64 64 LEU LEU B . n B 1 65 VAL 65 65 65 VAL VAL B . n B 1 66 LYS 66 66 66 LYS LYS B . n B 1 67 TYR 67 67 67 TYR TYR B . n B 1 68 MET 68 68 68 MET MET B . n B 1 69 HIS 69 69 69 HIS HIS B . n B 1 70 SER 70 70 70 SER SER B . n B 1 71 GLY 71 71 71 GLY GLY B . n B 1 72 PRO 72 72 72 PRO PRO B . n B 1 73 VAL 73 73 73 VAL VAL B . n B 1 74 VAL 74 74 74 VAL VAL B . n B 1 75 ALA 75 75 75 ALA ALA B . n B 1 76 MET 76 76 76 MET MET B . n B 1 77 VAL 77 77 77 VAL VAL B . n B 1 78 TRP 78 78 78 TRP TRP B . n B 1 79 GLU 79 79 79 GLU GLU B . n B 1 80 GLY 80 80 80 GLY GLY B . n B 1 81 LEU 81 81 81 LEU LEU B . n B 1 82 ASN 82 82 82 ASN ASN B . n B 1 83 VAL 83 83 83 VAL VAL B . n B 1 84 VAL 84 84 84 VAL VAL B . n B 1 85 LYS 85 85 85 LYS LYS B . n B 1 86 THR 86 86 86 THR THR B . n B 1 87 GLY 87 87 87 GLY GLY B . n B 1 88 ARG 88 88 88 ARG ARG B . n B 1 89 VAL 89 89 89 VAL VAL B . n B 1 90 MET 90 90 90 MET MET B . n B 1 91 LEU 91 91 91 LEU LEU B . n B 1 92 GLY 92 92 92 GLY GLY B . n B 1 93 GLU 93 93 93 GLU GLU B . n B 1 94 THR 94 94 94 THR THR B . n B 1 95 ASN 95 95 95 ASN ASN B . n B 1 96 PRO 96 96 96 PRO PRO B . n B 1 97 ALA 97 97 97 ALA ALA B . n B 1 98 ASP 98 98 98 ASP ASP B . n B 1 99 SER 99 99 99 SER SER B . n B 1 100 LYS 100 100 100 LYS LYS B . n B 1 101 PRO 101 101 101 PRO PRO B . n B 1 102 GLY 102 102 102 GLY GLY B . n B 1 103 THR 103 103 103 THR THR B . n B 1 104 ILE 104 104 104 ILE ILE B . n B 1 105 ARG 105 105 105 ARG ARG B . n B 1 106 GLY 106 106 106 GLY GLY B . n B 1 107 ASP 107 107 107 ASP ASP B . n B 1 108 PHE 108 108 108 PHE PHE B . n B 1 109 CYS 109 109 109 CYS CYS B . n B 1 110 ILE 110 110 110 ILE ILE B . n B 1 111 GLN 111 111 111 GLN GLN B . n B 1 112 VAL 112 112 112 VAL VAL B . n B 1 113 GLY 113 113 113 GLY GLY B . n B 1 114 ARG 114 114 114 ARG ARG B . n B 1 115 ASN 115 115 115 ASN ASN B . n B 1 116 ILE 116 116 116 ILE ILE B . n B 1 117 ILE 117 117 117 ILE ILE B . n B 1 118 HIS 118 118 118 HIS HIS B . n B 1 119 GLY 119 119 119 GLY GLY B . n B 1 120 SER 120 120 120 SER SER B . n B 1 121 ASP 121 121 121 ASP ASP B . n B 1 122 SER 122 122 122 SER SER B . n B 1 123 VAL 123 123 123 VAL VAL B . n B 1 124 GLU 124 124 124 GLU GLU B . n B 1 125 SER 125 125 125 SER SER B . n B 1 126 ALA 126 126 126 ALA ALA B . n B 1 127 GLU 127 127 127 GLU GLU B . n B 1 128 LYS 128 128 128 LYS LYS B . n B 1 129 GLU 129 129 129 GLU GLU B . n B 1 130 ILE 130 130 130 ILE ILE B . n B 1 131 GLY 131 131 131 GLY GLY B . n B 1 132 LEU 132 132 132 LEU LEU B . n B 1 133 TRP 133 133 133 TRP TRP B . n B 1 134 PHE 134 134 134 PHE PHE B . n B 1 135 HIS 135 135 135 HIS HIS B . n B 1 136 PRO 136 136 136 PRO PRO B . n B 1 137 GLU 137 137 137 GLU GLU B . n B 1 138 GLU 138 138 138 GLU GLU B . n B 1 139 LEU 139 139 139 LEU LEU B . n B 1 140 VAL 140 140 140 VAL VAL B . n B 1 141 ASP 141 141 141 ASP ASP B . n B 1 142 TYR 142 142 142 TYR TYR B . n B 1 143 THR 143 143 143 THR THR B . n B 1 144 SER 144 144 144 SER SER B . n B 1 145 CYS 145 145 145 CYS CYS B . n B 1 146 ALA 146 146 146 ALA ALA B . n B 1 147 GLN 147 147 147 GLN GLN B . n B 1 148 ASN 148 148 148 ASN ASN B . n B 1 149 TRP 149 149 149 TRP TRP B . n B 1 150 ILE 150 150 ? ? ? B . n B 1 151 TYR 151 151 ? ? ? B . n B 1 152 GLU 152 152 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 1 201 161 PO4 PO4 A . D 2 PO4 1 201 161 PO4 PO4 B . E 3 HOH 1 301 1 HOH HOH A . E 3 HOH 2 302 2 HOH HOH A . E 3 HOH 3 303 6 HOH HOH A . E 3 HOH 4 304 9 HOH HOH A . E 3 HOH 5 305 10 HOH HOH A . E 3 HOH 6 306 12 HOH HOH A . E 3 HOH 7 307 14 HOH HOH A . E 3 HOH 8 308 16 HOH HOH A . E 3 HOH 9 309 17 HOH HOH A . E 3 HOH 10 310 19 HOH HOH A . E 3 HOH 11 311 21 HOH HOH A . E 3 HOH 12 312 22 HOH HOH A . E 3 HOH 13 313 25 HOH HOH A . E 3 HOH 14 314 29 HOH HOH A . E 3 HOH 15 315 33 HOH HOH A . E 3 HOH 16 316 36 HOH HOH A . E 3 HOH 17 317 41 HOH HOH A . E 3 HOH 18 318 45 HOH HOH A . E 3 HOH 19 319 48 HOH HOH A . E 3 HOH 20 320 49 HOH HOH A . E 3 HOH 21 321 50 HOH HOH A . E 3 HOH 22 322 51 HOH HOH A . E 3 HOH 23 323 53 HOH HOH A . E 3 HOH 24 324 54 HOH HOH A . E 3 HOH 25 325 55 HOH HOH A . F 3 HOH 1 301 3 HOH HOH B . F 3 HOH 2 302 4 HOH HOH B . F 3 HOH 3 303 5 HOH HOH B . F 3 HOH 4 304 7 HOH HOH B . F 3 HOH 5 305 8 HOH HOH B . F 3 HOH 6 306 11 HOH HOH B . F 3 HOH 7 307 13 HOH HOH B . F 3 HOH 8 308 15 HOH HOH B . F 3 HOH 9 309 18 HOH HOH B . F 3 HOH 10 310 20 HOH HOH B . F 3 HOH 11 311 23 HOH HOH B . F 3 HOH 12 312 24 HOH HOH B . F 3 HOH 13 313 26 HOH HOH B . F 3 HOH 14 314 27 HOH HOH B . F 3 HOH 15 315 28 HOH HOH B . F 3 HOH 16 316 30 HOH HOH B . F 3 HOH 17 317 31 HOH HOH B . F 3 HOH 18 318 32 HOH HOH B . F 3 HOH 19 319 34 HOH HOH B . F 3 HOH 20 320 35 HOH HOH B . F 3 HOH 21 321 37 HOH HOH B . F 3 HOH 22 322 38 HOH HOH B . F 3 HOH 23 323 39 HOH HOH B . F 3 HOH 24 324 40 HOH HOH B . F 3 HOH 25 325 42 HOH HOH B . F 3 HOH 26 326 43 HOH HOH B . F 3 HOH 27 327 44 HOH HOH B . F 3 HOH 28 328 46 HOH HOH B . F 3 HOH 29 329 47 HOH HOH B . F 3 HOH 30 330 52 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 11860 ? 1 MORE -96 ? 1 'SSA (A^2)' 38420 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 6_456 z-1/2,-x+1/2,-y+1 0.0000000000 0.0000000000 1.0000000000 -53.3840000000 -1.0000000000 0.0000000000 0.0000000000 53.3840000000 0.0000000000 -1.0000000000 0.0000000000 106.7680000000 3 'crystal symmetry operation' 12_565 -y+1/2,-z+1,x+1/2 0.0000000000 -1.0000000000 0.0000000000 53.3840000000 0.0000000000 0.0000000000 -1.0000000000 106.7680000000 1.0000000000 0.0000000000 0.0000000000 53.3840000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-03-27 2 'Structure model' 1 1 2019-12-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_id_CSD' 3 2 'Structure model' '_citation.journal_id_ISSN' 4 2 'Structure model' '_citation.pdbx_database_id_PubMed' 5 2 'Structure model' '_citation.title' 6 2 'Structure model' '_citation_author.name' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 EPMR phasing . ? 2 CNS refinement 1.3 ? 3 HKL-2000 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 PHENIX refinement 1.8.1_1168 ? 6 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O B TRP 149 ? ? O B HOH 329 ? ? 2.13 2 1 N A ASP 141 ? ? O A HOH 308 ? ? 2.14 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 3 ? ? -74.78 20.70 2 1 TYR A 52 ? ? -94.60 32.70 3 1 ARG A 58 ? ? -44.64 152.33 4 1 TYR A 142 ? ? -171.74 11.84 5 1 SER A 144 ? ? 38.02 59.08 6 1 PRO B 96 ? ? -65.68 34.75 7 1 ASN B 115 ? ? -123.17 -168.73 8 1 TYR B 142 ? ? -152.33 -7.65 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU 152 ? A GLU 152 2 1 Y 1 B ILE 150 ? B ILE 150 3 1 Y 1 B TYR 151 ? B TYR 151 4 1 Y 1 B GLU 152 ? B GLU 152 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'PHOSPHATE ION' PO4 3 water HOH #