data_4EW4 # _entry.id 4EW4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4EW4 pdb_00004ew4 10.2210/pdb4ew4/pdb NDB NA1777 ? ? RCSB RCSB072142 ? ? WWPDB D_1000072142 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1NGN 'apo-structure of mouse MBD4 glycosylase domain' unspecified PDB 4EVV 'catalytic mutant D534N in complex with a G:T mismatch' unspecified PDB 4EW0 'Catalytic mutant D534N in complex containing a 5-hydroxymethyluracil' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4EW4 _pdbx_database_status.recvd_initial_deposition_date 2012-04-26 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hashimoto, H.' 1 'Zhang, X.' 2 'Cheng, X.' 3 # _citation.id primary _citation.title ;Excision of thymine and 5-hydroxymethyluracil by the MBD4 DNA glycosylase domain: structural basis and implications for active DNA demethylation. ; _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 40 _citation.page_first 8276 _citation.page_last 8284 _citation.year 2012 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22740654 _citation.pdbx_database_id_DOI 10.1093/nar/gks628 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hashimoto, H.' 1 ? primary 'Zhang, X.' 2 ? primary 'Cheng, X.' 3 ? # _cell.entry_id 4EW4 _cell.length_a 40.12 _cell.length_b 110.30 _cell.length_c 119.71 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4EW4 _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Methyl-CpG-binding domain protein 4' 17564.195 1 3.2.2.- ? 'glycosylase domain, UNP residues 411-554' ? 2 polymer syn ;DNA (5'-D(*TP*CP*AP*GP*CP*GP*CP*AP*TP*GP*G)-3') ; 3374.210 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*CP*CP*AP*TP*GP*(3DR)P*GP*CP*TP*GP*A)-3') ; 3225.100 1 ? ? ? ? 4 non-polymer syn 'NICKEL (II) ION' 58.693 1 ? ? ? ? 5 non-polymer syn 'UNKNOWN ATOM OR ION' 103.120 1 ? ? ? ? 6 water nat water 18.015 18 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Methyl-CpG-binding protein MBD4,Mismatch-specific DNA N-glycosylase' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;HMKWTPPRSPFNLVQEILFHDPWKLLIATIFLNRTSGKMAIPVLWEFLEKYPSAEVARAADWRDVSELLKPLGLYDLRAK TIIKFSDEYLTKQWRYPIELHGIGKYGNDSYRIFCVNEWKQVHPEDHKLNKYHDWLWENHEKLSLS ; ;HMKWTPPRSPFNLVQEILFHDPWKLLIATIFLNRTSGKMAIPVLWEFLEKYPSAEVARAADWRDVSELLKPLGLYDLRAK TIIKFSDEYLTKQWRYPIELHGIGKYGNDSYRIFCVNEWKQVHPEDHKLNKYHDWLWENHEKLSLS ; A ? 2 polydeoxyribonucleotide no no '(DT)(DC)(DA)(DG)(DC)(DG)(DC)(DA)(DT)(DG)(DG)' TCAGCGCATGG B ? 3 polydeoxyribonucleotide no yes '(DC)(DC)(DA)(DT)(DG)(3DR)(DG)(DC)(DT)(DG)(DA)' CCATGNGCTGA C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 HIS n 1 2 MET n 1 3 LYS n 1 4 TRP n 1 5 THR n 1 6 PRO n 1 7 PRO n 1 8 ARG n 1 9 SER n 1 10 PRO n 1 11 PHE n 1 12 ASN n 1 13 LEU n 1 14 VAL n 1 15 GLN n 1 16 GLU n 1 17 ILE n 1 18 LEU n 1 19 PHE n 1 20 HIS n 1 21 ASP n 1 22 PRO n 1 23 TRP n 1 24 LYS n 1 25 LEU n 1 26 LEU n 1 27 ILE n 1 28 ALA n 1 29 THR n 1 30 ILE n 1 31 PHE n 1 32 LEU n 1 33 ASN n 1 34 ARG n 1 35 THR n 1 36 SER n 1 37 GLY n 1 38 LYS n 1 39 MET n 1 40 ALA n 1 41 ILE n 1 42 PRO n 1 43 VAL n 1 44 LEU n 1 45 TRP n 1 46 GLU n 1 47 PHE n 1 48 LEU n 1 49 GLU n 1 50 LYS n 1 51 TYR n 1 52 PRO n 1 53 SER n 1 54 ALA n 1 55 GLU n 1 56 VAL n 1 57 ALA n 1 58 ARG n 1 59 ALA n 1 60 ALA n 1 61 ASP n 1 62 TRP n 1 63 ARG n 1 64 ASP n 1 65 VAL n 1 66 SER n 1 67 GLU n 1 68 LEU n 1 69 LEU n 1 70 LYS n 1 71 PRO n 1 72 LEU n 1 73 GLY n 1 74 LEU n 1 75 TYR n 1 76 ASP n 1 77 LEU n 1 78 ARG n 1 79 ALA n 1 80 LYS n 1 81 THR n 1 82 ILE n 1 83 ILE n 1 84 LYS n 1 85 PHE n 1 86 SER n 1 87 ASP n 1 88 GLU n 1 89 TYR n 1 90 LEU n 1 91 THR n 1 92 LYS n 1 93 GLN n 1 94 TRP n 1 95 ARG n 1 96 TYR n 1 97 PRO n 1 98 ILE n 1 99 GLU n 1 100 LEU n 1 101 HIS n 1 102 GLY n 1 103 ILE n 1 104 GLY n 1 105 LYS n 1 106 TYR n 1 107 GLY n 1 108 ASN n 1 109 ASP n 1 110 SER n 1 111 TYR n 1 112 ARG n 1 113 ILE n 1 114 PHE n 1 115 CYS n 1 116 VAL n 1 117 ASN n 1 118 GLU n 1 119 TRP n 1 120 LYS n 1 121 GLN n 1 122 VAL n 1 123 HIS n 1 124 PRO n 1 125 GLU n 1 126 ASP n 1 127 HIS n 1 128 LYS n 1 129 LEU n 1 130 ASN n 1 131 LYS n 1 132 TYR n 1 133 HIS n 1 134 ASP n 1 135 TRP n 1 136 LEU n 1 137 TRP n 1 138 GLU n 1 139 ASN n 1 140 HIS n 1 141 GLU n 1 142 LYS n 1 143 LEU n 1 144 SER n 1 145 LEU n 1 146 SER n 2 1 DT n 2 2 DC n 2 3 DA n 2 4 DG n 2 5 DC n 2 6 DG n 2 7 DC n 2 8 DA n 2 9 DT n 2 10 DG n 2 11 DG n 3 1 DC n 3 2 DC n 3 3 DA n 3 4 DT n 3 5 DG n 3 6 3DR n 3 7 DG n 3 8 DC n 3 9 DT n 3 10 DG n 3 11 DA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 146 _entity_src_gen.gene_src_common_name Mouse _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene Mbd4 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pXC1064 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample 1 11 'synthetic construct' ? 32630 'oligonucleotide synthesis' 3 1 sample 1 11 'synthetic construct' ? 32630 'oligonucleotide synthesis' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP MBD4_MOUSE Q9Z2D7 ? 1 ;KWTPPRSPFNLVQEILFHDPWKLLIATIFLNRTSGKMAIPVLWEFLEKYPSAEVARAADWRDVSELLKPLGLYDLRAKTI IKFSDEYLTKQWRYPIELHGIGKYGNDSYRIFCVNEWKQVHPEDHKLNKYHDWLWENHEKLSLS ; 411 2 PDB 4EW4 4EW4 ? 2 ? 1 3 PDB 4EW4 4EW4 ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4EW4 A 3 ? 146 ? Q9Z2D7 411 ? 554 ? 411 554 2 2 4EW4 B 1 ? 11 ? 4EW4 1 ? 11 ? 1 11 3 3 4EW4 C 1 ? 11 ? 4EW4 12 ? 22 ? 12 22 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4EW4 HIS A 1 ? UNP Q9Z2D7 ? ? 'expression tag' 409 1 1 4EW4 MET A 2 ? UNP Q9Z2D7 ? ? 'expression tag' 410 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 3DR 'DNA linking' . "1',2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE" 'ABASIC DIDEOXYRIBOSE' 'C5 H11 O6 P' 198.111 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NI non-polymer . 'NICKEL (II) ION' ? 'Ni 2' 58.693 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UNX non-polymer . 'UNKNOWN ATOM OR ION' ? ? ? VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4EW4 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.74 _exptl_crystal.density_percent_sol 55.12 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.pdbx_details '25% polyethylene glycol 3350, 200 mM NaCl, 100 mM BIS-TRIS-HCl, pH 5.6, VAPOR DIFFUSION, SITTING DROP, temperature 289K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2011-11-11 _diffrn_detector.details 'Si (220)' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Rosenbaum-Rock double-crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-BM' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-BM _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 # _reflns.entry_id 4EW4 _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 27.40 _reflns.d_resolution_high 2.791 _reflns.number_obs 6818 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.058 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 29.8 _reflns.B_iso_Wilson_estimate 78.66 _reflns.pdbx_redundancy 8.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.791 _reflns_shell.d_res_low 2.94 _reflns_shell.percent_possible_all 99.4 _reflns_shell.Rmerge_I_obs 0.058 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.7 _reflns_shell.pdbx_redundancy 7.6 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 657 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4EW4 _refine.ls_number_reflns_obs 6791 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 27.40 _refine.ls_d_res_high 2.791 _refine.ls_percent_reflns_obs 98.08 _refine.ls_R_factor_obs 0.2604 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2594 _refine.ls_R_factor_R_free 0.2766 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.99 _refine.ls_number_reflns_R_free 339 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] 0.1554 _refine.aniso_B[2][2] -14.3218 _refine.aniso_B[3][3] 14.1664 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] -0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.295 _refine.solvent_model_param_bsol 51.141 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.98 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1NGN' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.36 _refine.pdbx_overall_phase_error 36.71 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1176 _refine_hist.pdbx_number_atoms_nucleic_acid 435 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 18 _refine_hist.number_atoms_total 1631 _refine_hist.d_res_high 2.791 _refine_hist.d_res_low 27.40 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.004 ? ? 1706 ? 'X-RAY DIFFRACTION' f_angle_d 0.865 ? ? 2412 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 20.825 ? ? 633 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.062 ? ? 256 ? 'X-RAY DIFFRACTION' f_plane_restr 0.004 ? ? 227 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 2.791 3.5153 3095 0.3295 96.00 0.3702 . . 163 . . . . 'X-RAY DIFFRACTION' . 3.5153 27.4052 3357 0.2405 100.00 0.2520 . . 176 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 4EW4 _struct.title 'mouse MBD4 glycosylase domain in complex with DNA containing a ribose sugar' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4EW4 _struct_keywords.pdbx_keywords HYDROLASE/DNA _struct_keywords.text 'stable intermediate, N-glycosidic bond, Helix-hairpin-Helix, DNA glycosylase, HYDROLASE-DNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 6 ? H N N 6 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 VAL A 14 ? PHE A 19 ? VAL A 422 PHE A 427 1 ? 6 HELX_P HELX_P2 2 ASP A 21 ? LEU A 32 ? ASP A 429 LEU A 440 1 ? 12 HELX_P HELX_P3 3 SER A 36 ? TYR A 51 ? SER A 444 TYR A 459 1 ? 16 HELX_P HELX_P4 4 SER A 53 ? ALA A 59 ? SER A 461 ALA A 467 1 ? 7 HELX_P HELX_P5 5 ASP A 61 ? GLU A 67 ? ASP A 469 GLU A 475 1 ? 7 HELX_P HELX_P6 6 LEU A 74 ? LYS A 92 ? LEU A 482 LYS A 500 1 ? 19 HELX_P HELX_P7 7 TYR A 96 ? LEU A 100 ? TYR A 504 LEU A 508 5 ? 5 HELX_P HELX_P8 8 GLY A 104 ? CYS A 115 ? GLY A 512 CYS A 523 1 ? 12 HELX_P HELX_P9 9 ASP A 126 ? HIS A 140 ? ASP A 534 HIS A 548 1 ? 15 HELX_P HELX_P10 10 GLU A 141 ? LEU A 143 ? GLU A 549 LEU A 551 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? C DG 5 "O3'" ? ? ? 1_555 C 3DR 6 P ? ? C DG 16 C 3DR 17 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale2 covale both ? C 3DR 6 "O3'" ? ? ? 1_555 C DG 7 P ? ? C 3DR 17 C DG 18 1_555 ? ? ? ? ? ? ? 1.608 ? ? metalc1 metalc ? ? A ILE 98 O ? ? ? 1_555 D NI . NI ? ? A ILE 506 A NI 601 1_555 ? ? ? ? ? ? ? 2.054 ? ? metalc2 metalc ? ? A LEU 100 O ? ? ? 1_555 D NI . NI ? ? A LEU 508 A NI 601 1_555 ? ? ? ? ? ? ? 2.000 ? ? metalc3 metalc ? ? A ILE 103 O ? ? ? 1_555 D NI . NI ? ? A ILE 511 A NI 601 1_555 ? ? ? ? ? ? ? 2.040 ? ? metalc4 metalc ? ? D NI . NI ? ? ? 1_555 C DT 9 OP1 ? ? A NI 601 C DT 20 1_555 ? ? ? ? ? ? ? 2.028 ? ? hydrog1 hydrog ? ? B DT 1 N3 ? ? ? 1_555 C DA 11 N1 ? ? B DT 1 C DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DT 1 O4 ? ? ? 1_555 C DA 11 N6 ? ? B DT 1 C DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DC 2 N3 ? ? ? 1_555 C DG 10 N1 ? ? B DC 2 C DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DC 2 N4 ? ? ? 1_555 C DG 10 O6 ? ? B DC 2 C DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DC 2 O2 ? ? ? 1_555 C DG 10 N2 ? ? B DC 2 C DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DA 3 N1 ? ? ? 1_555 C DT 9 N3 ? ? B DA 3 C DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DA 3 N6 ? ? ? 1_555 C DT 9 O4 ? ? B DA 3 C DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DG 4 N1 ? ? ? 1_555 C DC 8 N3 ? ? B DG 4 C DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DG 4 N2 ? ? ? 1_555 C DC 8 O2 ? ? B DG 4 C DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DG 4 O6 ? ? ? 1_555 C DC 8 N4 ? ? B DG 4 C DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DC 5 N3 ? ? ? 1_555 C DG 7 N1 ? ? B DC 5 C DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DC 5 N4 ? ? ? 1_555 C DG 7 O6 ? ? B DC 5 C DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DC 5 O2 ? ? ? 1_555 C DG 7 N2 ? ? B DC 5 C DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DC 7 N3 ? ? ? 1_555 C DG 5 N1 ? ? B DC 7 C DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DC 7 N4 ? ? ? 1_555 C DG 5 O6 ? ? B DC 7 C DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DC 7 O2 ? ? ? 1_555 C DG 5 N2 ? ? B DC 7 C DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DA 8 N1 ? ? ? 1_555 C DT 4 N3 ? ? B DA 8 C DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DA 8 N6 ? ? ? 1_555 C DT 4 O4 ? ? B DA 8 C DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DT 9 N3 ? ? ? 1_555 C DA 3 N1 ? ? B DT 9 C DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DT 9 O4 ? ? ? 1_555 C DA 3 N6 ? ? B DT 9 C DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DG 10 N1 ? ? ? 1_555 C DC 2 N3 ? ? B DG 10 C DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DG 10 N2 ? ? ? 1_555 C DC 2 O2 ? ? B DG 10 C DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DG 10 O6 ? ? ? 1_555 C DC 2 N4 ? ? B DG 10 C DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DG 11 N1 ? ? ? 1_555 C DC 1 N3 ? ? B DG 11 C DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DG 11 N2 ? ? ? 1_555 C DC 1 O2 ? ? B DG 11 C DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DG 11 O6 ? ? ? 1_555 C DC 1 N4 ? ? B DG 11 C DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id NI _struct_site.pdbx_auth_seq_id 601 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'BINDING SITE FOR RESIDUE NI A 601' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 ILE A 98 ? ILE A 506 . ? 1_555 ? 2 AC1 4 LEU A 100 ? LEU A 508 . ? 1_555 ? 3 AC1 4 ILE A 103 ? ILE A 511 . ? 1_555 ? 4 AC1 4 DT C 9 ? DT C 20 . ? 1_555 ? # _database_PDB_matrix.entry_id 4EW4 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4EW4 _atom_sites.fract_transf_matrix[1][1] 0.024926 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009066 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008354 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N NI O P S X # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 HIS 1 409 ? ? ? A . n A 1 2 MET 2 410 ? ? ? A . n A 1 3 LYS 3 411 411 LYS LYS A . n A 1 4 TRP 4 412 412 TRP TRP A . n A 1 5 THR 5 413 413 THR THR A . n A 1 6 PRO 6 414 414 PRO PRO A . n A 1 7 PRO 7 415 415 PRO PRO A . n A 1 8 ARG 8 416 416 ARG ARG A . n A 1 9 SER 9 417 417 SER SER A . n A 1 10 PRO 10 418 418 PRO PRO A . n A 1 11 PHE 11 419 419 PHE PHE A . n A 1 12 ASN 12 420 420 ASN ASN A . n A 1 13 LEU 13 421 421 LEU LEU A . n A 1 14 VAL 14 422 422 VAL VAL A . n A 1 15 GLN 15 423 423 GLN GLN A . n A 1 16 GLU 16 424 424 GLU GLU A . n A 1 17 ILE 17 425 425 ILE ILE A . n A 1 18 LEU 18 426 426 LEU LEU A . n A 1 19 PHE 19 427 427 PHE PHE A . n A 1 20 HIS 20 428 428 HIS HIS A . n A 1 21 ASP 21 429 429 ASP ASP A . n A 1 22 PRO 22 430 430 PRO PRO A . n A 1 23 TRP 23 431 431 TRP TRP A . n A 1 24 LYS 24 432 432 LYS LYS A . n A 1 25 LEU 25 433 433 LEU LEU A . n A 1 26 LEU 26 434 434 LEU LEU A . n A 1 27 ILE 27 435 435 ILE ILE A . n A 1 28 ALA 28 436 436 ALA ALA A . n A 1 29 THR 29 437 437 THR THR A . n A 1 30 ILE 30 438 438 ILE ILE A . n A 1 31 PHE 31 439 439 PHE PHE A . n A 1 32 LEU 32 440 440 LEU LEU A . n A 1 33 ASN 33 441 441 ASN ASN A . n A 1 34 ARG 34 442 442 ARG ARG A . n A 1 35 THR 35 443 443 THR THR A . n A 1 36 SER 36 444 444 SER SER A . n A 1 37 GLY 37 445 445 GLY GLY A . n A 1 38 LYS 38 446 446 LYS LYS A . n A 1 39 MET 39 447 447 MET MET A . n A 1 40 ALA 40 448 448 ALA ALA A . n A 1 41 ILE 41 449 449 ILE ILE A . n A 1 42 PRO 42 450 450 PRO PRO A . n A 1 43 VAL 43 451 451 VAL VAL A . n A 1 44 LEU 44 452 452 LEU LEU A . n A 1 45 TRP 45 453 453 TRP TRP A . n A 1 46 GLU 46 454 454 GLU GLU A . n A 1 47 PHE 47 455 455 PHE PHE A . n A 1 48 LEU 48 456 456 LEU LEU A . n A 1 49 GLU 49 457 457 GLU GLU A . n A 1 50 LYS 50 458 458 LYS LYS A . n A 1 51 TYR 51 459 459 TYR TYR A . n A 1 52 PRO 52 460 460 PRO PRO A . n A 1 53 SER 53 461 461 SER SER A . n A 1 54 ALA 54 462 462 ALA ALA A . n A 1 55 GLU 55 463 463 GLU GLU A . n A 1 56 VAL 56 464 464 VAL VAL A . n A 1 57 ALA 57 465 465 ALA ALA A . n A 1 58 ARG 58 466 466 ARG ARG A . n A 1 59 ALA 59 467 467 ALA ALA A . n A 1 60 ALA 60 468 468 ALA ALA A . n A 1 61 ASP 61 469 469 ASP ASP A . n A 1 62 TRP 62 470 470 TRP TRP A . n A 1 63 ARG 63 471 471 ARG ARG A . n A 1 64 ASP 64 472 472 ASP ASP A . n A 1 65 VAL 65 473 473 VAL VAL A . n A 1 66 SER 66 474 474 SER SER A . n A 1 67 GLU 67 475 475 GLU GLU A . n A 1 68 LEU 68 476 476 LEU LEU A . n A 1 69 LEU 69 477 477 LEU LEU A . n A 1 70 LYS 70 478 478 LYS LYS A . n A 1 71 PRO 71 479 479 PRO PRO A . n A 1 72 LEU 72 480 480 LEU LEU A . n A 1 73 GLY 73 481 481 GLY GLY A . n A 1 74 LEU 74 482 482 LEU LEU A . n A 1 75 TYR 75 483 483 TYR TYR A . n A 1 76 ASP 76 484 484 ASP ASP A . n A 1 77 LEU 77 485 485 LEU LEU A . n A 1 78 ARG 78 486 486 ARG ARG A . n A 1 79 ALA 79 487 487 ALA ALA A . n A 1 80 LYS 80 488 488 LYS LYS A . n A 1 81 THR 81 489 489 THR THR A . n A 1 82 ILE 82 490 490 ILE ILE A . n A 1 83 ILE 83 491 491 ILE ILE A . n A 1 84 LYS 84 492 492 LYS LYS A . n A 1 85 PHE 85 493 493 PHE PHE A . n A 1 86 SER 86 494 494 SER SER A . n A 1 87 ASP 87 495 495 ASP ASP A . n A 1 88 GLU 88 496 496 GLU GLU A . n A 1 89 TYR 89 497 497 TYR TYR A . n A 1 90 LEU 90 498 498 LEU LEU A . n A 1 91 THR 91 499 499 THR THR A . n A 1 92 LYS 92 500 500 LYS LYS A . n A 1 93 GLN 93 501 501 GLN ALA A . n A 1 94 TRP 94 502 502 TRP TRP A . n A 1 95 ARG 95 503 503 ARG ARG A . n A 1 96 TYR 96 504 504 TYR TYR A . n A 1 97 PRO 97 505 505 PRO PRO A . n A 1 98 ILE 98 506 506 ILE ILE A . n A 1 99 GLU 99 507 507 GLU GLU A . n A 1 100 LEU 100 508 508 LEU LEU A . n A 1 101 HIS 101 509 509 HIS HIS A . n A 1 102 GLY 102 510 510 GLY GLY A . n A 1 103 ILE 103 511 511 ILE ILE A . n A 1 104 GLY 104 512 512 GLY GLY A . n A 1 105 LYS 105 513 513 LYS LYS A . n A 1 106 TYR 106 514 514 TYR TYR A . n A 1 107 GLY 107 515 515 GLY GLY A . n A 1 108 ASN 108 516 516 ASN ASN A . n A 1 109 ASP 109 517 517 ASP ASP A . n A 1 110 SER 110 518 518 SER SER A . n A 1 111 TYR 111 519 519 TYR TYR A . n A 1 112 ARG 112 520 520 ARG ARG A . n A 1 113 ILE 113 521 521 ILE ILE A . n A 1 114 PHE 114 522 522 PHE PHE A . n A 1 115 CYS 115 523 523 CYS CYS A . n A 1 116 VAL 116 524 524 VAL VAL A . n A 1 117 ASN 117 525 525 ASN ASN A . n A 1 118 GLU 118 526 526 GLU GLU A . n A 1 119 TRP 119 527 527 TRP TRP A . n A 1 120 LYS 120 528 528 LYS LYS A . n A 1 121 GLN 121 529 529 GLN GLN A . n A 1 122 VAL 122 530 530 VAL VAL A . n A 1 123 HIS 123 531 531 HIS HIS A . n A 1 124 PRO 124 532 532 PRO PRO A . n A 1 125 GLU 125 533 533 GLU GLU A . n A 1 126 ASP 126 534 534 ASP ASP A . n A 1 127 HIS 127 535 535 HIS HIS A . n A 1 128 LYS 128 536 536 LYS LYS A . n A 1 129 LEU 129 537 537 LEU LEU A . n A 1 130 ASN 130 538 538 ASN ASN A . n A 1 131 LYS 131 539 539 LYS LYS A . n A 1 132 TYR 132 540 540 TYR TYR A . n A 1 133 HIS 133 541 541 HIS HIS A . n A 1 134 ASP 134 542 542 ASP ASP A . n A 1 135 TRP 135 543 543 TRP TRP A . n A 1 136 LEU 136 544 544 LEU LEU A . n A 1 137 TRP 137 545 545 TRP TRP A . n A 1 138 GLU 138 546 546 GLU GLU A . n A 1 139 ASN 139 547 547 ASN ASN A . n A 1 140 HIS 140 548 548 HIS HIS A . n A 1 141 GLU 141 549 549 GLU GLU A . n A 1 142 LYS 142 550 550 LYS LYS A . n A 1 143 LEU 143 551 551 LEU LEU A . n A 1 144 SER 144 552 552 SER SER A . n A 1 145 LEU 145 553 ? ? ? A . n A 1 146 SER 146 554 ? ? ? A . n B 2 1 DT 1 1 1 DT DT B . n B 2 2 DC 2 2 2 DC DC B . n B 2 3 DA 3 3 3 DA DA B . n B 2 4 DG 4 4 4 DG DG B . n B 2 5 DC 5 5 5 DC DC B . n B 2 6 DG 6 6 6 DG DG B . n B 2 7 DC 7 7 7 DC DC B . n B 2 8 DA 8 8 8 DA DA B . n B 2 9 DT 9 9 9 DT DT B . n B 2 10 DG 10 10 10 DG DG B . n B 2 11 DG 11 11 11 DG DG B . n C 3 1 DC 1 12 12 DC DC C . n C 3 2 DC 2 13 13 DC DC C . n C 3 3 DA 3 14 14 DA DA C . n C 3 4 DT 4 15 15 DT DT C . n C 3 5 DG 5 16 16 DG DG C . n C 3 6 3DR 6 17 17 3DR 3DR C . n C 3 7 DG 7 18 18 DG DG C . n C 3 8 DC 8 19 19 DC DC C . n C 3 9 DT 9 20 20 DT DT C . n C 3 10 DG 10 21 21 DG DG C . n C 3 11 DA 11 22 22 DA DA C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NI 1 601 1 NI NI A . E 5 UNX 1 602 23 UNX UNK A . F 6 HOH 1 701 2 HOH HOH A . F 6 HOH 2 702 3 HOH HOH A . F 6 HOH 3 703 4 HOH HOH A . F 6 HOH 4 704 5 HOH HOH A . F 6 HOH 5 705 6 HOH HOH A . F 6 HOH 6 706 7 HOH HOH A . F 6 HOH 7 707 8 HOH HOH A . F 6 HOH 8 708 9 HOH HOH A . F 6 HOH 9 709 11 HOH HOH A . F 6 HOH 10 710 12 HOH HOH A . F 6 HOH 11 711 14 HOH HOH A . F 6 HOH 12 712 15 HOH HOH A . F 6 HOH 13 713 19 HOH HOH A . F 6 HOH 14 714 20 HOH HOH A . F 6 HOH 15 715 21 HOH HOH A . G 6 HOH 1 101 18 HOH HOH B . H 6 HOH 1 101 1 HOH HOH C . H 6 HOH 2 102 17 HOH HOH C . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3450 ? 1 MORE -22 ? 1 'SSA (A^2)' 9690 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A ILE 98 ? A ILE 506 ? 1_555 NI ? D NI . ? A NI 601 ? 1_555 O ? A LEU 100 ? A LEU 508 ? 1_555 86.7 ? 2 O ? A ILE 98 ? A ILE 506 ? 1_555 NI ? D NI . ? A NI 601 ? 1_555 O ? A ILE 103 ? A ILE 511 ? 1_555 78.0 ? 3 O ? A LEU 100 ? A LEU 508 ? 1_555 NI ? D NI . ? A NI 601 ? 1_555 O ? A ILE 103 ? A ILE 511 ? 1_555 112.8 ? 4 O ? A ILE 98 ? A ILE 506 ? 1_555 NI ? D NI . ? A NI 601 ? 1_555 OP1 ? C DT 9 ? C DT 20 ? 1_555 148.1 ? 5 O ? A LEU 100 ? A LEU 508 ? 1_555 NI ? D NI . ? A NI 601 ? 1_555 OP1 ? C DT 9 ? C DT 20 ? 1_555 121.5 ? 6 O ? A ILE 103 ? A ILE 511 ? 1_555 NI ? D NI . ? A NI 601 ? 1_555 OP1 ? C DT 9 ? C DT 20 ? 1_555 101.3 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-07-11 2 'Structure model' 1 1 2012-10-10 3 'Structure model' 2 0 2017-12-27 4 'Structure model' 2 1 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Atomic model' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Non-polymer description' 6 3 'Structure model' 'Source and taxonomy' 7 3 'Structure model' 'Structure summary' 8 4 'Structure model' 'Data collection' 9 4 'Structure model' 'Database references' 10 4 'Structure model' 'Derived calculations' 11 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' atom_site 2 3 'Structure model' entity 3 3 'Structure model' entity_name_com 4 3 'Structure model' entity_src_gen 5 3 'Structure model' pdbx_distant_solvent_atoms 6 3 'Structure model' pdbx_entity_src_syn 7 3 'Structure model' struct_ref 8 3 'Structure model' struct_ref_seq_dif 9 4 'Structure model' chem_comp_atom 10 4 'Structure model' chem_comp_bond 11 4 'Structure model' database_2 12 4 'Structure model' pdbx_initial_refinement_model 13 4 'Structure model' pdbx_struct_conn_angle 14 4 'Structure model' struct_conn 15 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_atom_site.B_iso_or_equiv' 2 3 'Structure model' '_atom_site.Cartn_x' 3 3 'Structure model' '_atom_site.Cartn_y' 4 3 'Structure model' '_atom_site.Cartn_z' 5 3 'Structure model' '_atom_site.auth_atom_id' 6 3 'Structure model' '_atom_site.auth_comp_id' 7 3 'Structure model' '_atom_site.label_atom_id' 8 3 'Structure model' '_atom_site.label_comp_id' 9 3 'Structure model' '_chem_comp.formula' 10 3 'Structure model' '_chem_comp.id' 11 3 'Structure model' '_chem_comp.name' 12 3 'Structure model' '_entity.pdbx_description' 13 3 'Structure model' '_entity_name_com.name' 14 3 'Structure model' '_entity_src_gen.gene_src_common_name' 15 3 'Structure model' '_entity_src_gen.pdbx_beg_seq_num' 16 3 'Structure model' '_entity_src_gen.pdbx_end_seq_num' 17 3 'Structure model' '_entity_src_gen.pdbx_seq_type' 18 3 'Structure model' '_pdbx_entity_src_syn.ncbi_taxonomy_id' 19 3 'Structure model' '_pdbx_entity_src_syn.organism_scientific' 20 3 'Structure model' '_pdbx_entity_src_syn.pdbx_beg_seq_num' 21 3 'Structure model' '_pdbx_entity_src_syn.pdbx_end_seq_num' 22 3 'Structure model' '_struct_ref.pdbx_align_begin' 23 3 'Structure model' '_struct_ref.pdbx_seq_one_letter_code' 24 3 'Structure model' '_struct_ref_seq_dif.details' 25 4 'Structure model' '_database_2.pdbx_DOI' 26 4 'Structure model' '_database_2.pdbx_database_accession' 27 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 28 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 29 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 30 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 31 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 32 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 33 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 34 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 35 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 36 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 37 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 38 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 39 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 40 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 41 4 'Structure model' '_pdbx_struct_conn_angle.value' 42 4 'Structure model' '_struct_conn.pdbx_dist_value' 43 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 44 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 45 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 46 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 47 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 48 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 49 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 50 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 51 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 52 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 53 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 54 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 55 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 56 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 57 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 58 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 59 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 60 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 PHENIX 'model building' . ? 2 PHENIX refinement '(phenix.refine: 1.7.3_928)' ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 PHENIX phasing . ? 6 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OD1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 ASP _pdbx_validate_close_contact.auth_seq_id_1 534 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 B _pdbx_validate_close_contact.auth_atom_id_2 "C1'" _pdbx_validate_close_contact.auth_asym_id_2 C _pdbx_validate_close_contact.auth_comp_id_2 3DR _pdbx_validate_close_contact.auth_seq_id_2 17 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.80 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" C DT 15 ? ? "C1'" C DT 15 ? ? N1 C DT 15 ? ? 110.56 108.30 2.26 0.30 N 2 1 "O4'" C DA 22 ? ? "C1'" C DA 22 ? ? N9 C DA 22 ? ? 111.41 108.30 3.11 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 413 ? ? 53.76 76.28 2 1 TYR A 483 ? ? -58.86 -70.05 3 1 THR A 499 ? ? -93.74 -67.21 4 1 TRP A 502 ? ? -127.28 -58.26 5 1 ARG A 503 ? ? 65.07 -119.13 6 1 LEU A 551 ? ? -108.80 -74.21 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 713 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.92 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 416 ? CG ? A ARG 8 CG 2 1 Y 1 A ARG 416 ? CD ? A ARG 8 CD 3 1 Y 1 A ARG 416 ? NE ? A ARG 8 NE 4 1 Y 1 A ARG 416 ? CZ ? A ARG 8 CZ 5 1 Y 1 A ARG 416 ? NH1 ? A ARG 8 NH1 6 1 Y 1 A ARG 416 ? NH2 ? A ARG 8 NH2 7 1 Y 1 A ARG 471 ? CG ? A ARG 63 CG 8 1 Y 1 A ARG 471 ? CD ? A ARG 63 CD 9 1 Y 1 A ARG 471 ? NE ? A ARG 63 NE 10 1 Y 1 A ARG 471 ? CZ ? A ARG 63 CZ 11 1 Y 1 A ARG 471 ? NH1 ? A ARG 63 NH1 12 1 Y 1 A ARG 471 ? NH2 ? A ARG 63 NH2 13 1 Y 1 A LEU 485 ? CG ? A LEU 77 CG 14 1 Y 1 A LEU 485 ? CD1 ? A LEU 77 CD1 15 1 Y 1 A LEU 485 ? CD2 ? A LEU 77 CD2 16 1 Y 1 A LYS 488 ? CG ? A LYS 80 CG 17 1 Y 1 A LYS 488 ? CD ? A LYS 80 CD 18 1 Y 1 A LYS 488 ? CE ? A LYS 80 CE 19 1 Y 1 A LYS 488 ? NZ ? A LYS 80 NZ 20 1 Y 1 A LEU 498 ? CG ? A LEU 90 CG 21 1 Y 1 A LEU 498 ? CD1 ? A LEU 90 CD1 22 1 Y 1 A LEU 498 ? CD2 ? A LEU 90 CD2 23 1 Y 1 A GLN 501 ? CG ? A GLN 93 CG 24 1 Y 1 A GLN 501 ? CD ? A GLN 93 CD 25 1 Y 1 A GLN 501 ? OE1 ? A GLN 93 OE1 26 1 Y 1 A GLN 501 ? NE2 ? A GLN 93 NE2 27 1 Y 1 A ARG 503 ? CG ? A ARG 95 CG 28 1 Y 1 A ARG 503 ? CD ? A ARG 95 CD 29 1 Y 1 A ARG 503 ? NE ? A ARG 95 NE 30 1 Y 1 A ARG 503 ? CZ ? A ARG 95 CZ 31 1 Y 1 A ARG 503 ? NH1 ? A ARG 95 NH1 32 1 Y 1 A ARG 503 ? NH2 ? A ARG 95 NH2 33 1 Y 1 A HIS 535 ? CG ? A HIS 127 CG 34 1 Y 1 A HIS 535 ? ND1 ? A HIS 127 ND1 35 1 Y 1 A HIS 535 ? CD2 ? A HIS 127 CD2 36 1 Y 1 A HIS 535 ? CE1 ? A HIS 127 CE1 37 1 Y 1 A HIS 535 ? NE2 ? A HIS 127 NE2 38 1 Y 1 C DC 12 ? "O5'" ? C DC 1 "O5'" 39 1 Y 1 C DC 12 ? "C5'" ? C DC 1 "C5'" # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A HIS 409 ? A HIS 1 2 1 Y 1 A MET 410 ? A MET 2 3 1 Y 1 A LEU 553 ? A LEU 145 4 1 Y 1 A SER 554 ? A SER 146 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 3DR "O5'" O N N 1 3DR P P N N 2 3DR OP1 O N N 3 3DR OP2 O N N 4 3DR OP3 O N N 5 3DR "C2'" C N N 6 3DR "C5'" C N N 7 3DR "C4'" C N R 8 3DR "O4'" O N N 9 3DR "C1'" C N N 10 3DR "C3'" C N S 11 3DR "O3'" O N N 12 3DR HOP2 H N N 13 3DR HOP3 H N N 14 3DR "H2'" H N N 15 3DR "H2''" H N N 16 3DR "H5'" H N N 17 3DR "H5''" H N N 18 3DR "H4'1" H N N 19 3DR "H1'1" H N N 20 3DR "H1'2" H N N 21 3DR "H3'" H N N 22 3DR "HO3'" H N N 23 ALA N N N N 24 ALA CA C N S 25 ALA C C N N 26 ALA O O N N 27 ALA CB C N N 28 ALA OXT O N N 29 ALA H H N N 30 ALA H2 H N N 31 ALA HA H N N 32 ALA HB1 H N N 33 ALA HB2 H N N 34 ALA HB3 H N N 35 ALA HXT H N N 36 ARG N N N N 37 ARG CA C N S 38 ARG C C N N 39 ARG O O N N 40 ARG CB C N N 41 ARG CG C N N 42 ARG CD C N N 43 ARG NE N N N 44 ARG CZ C N N 45 ARG NH1 N N N 46 ARG NH2 N N N 47 ARG OXT O N N 48 ARG H H N N 49 ARG H2 H N N 50 ARG HA H N N 51 ARG HB2 H N N 52 ARG HB3 H N N 53 ARG HG2 H N N 54 ARG HG3 H N N 55 ARG HD2 H N N 56 ARG HD3 H N N 57 ARG HE H N N 58 ARG HH11 H N N 59 ARG HH12 H N N 60 ARG HH21 H N N 61 ARG HH22 H N N 62 ARG HXT H N N 63 ASN N N N N 64 ASN CA C N S 65 ASN C C N N 66 ASN O O N N 67 ASN CB C N N 68 ASN CG C N N 69 ASN OD1 O N N 70 ASN ND2 N N N 71 ASN OXT O N N 72 ASN H H N N 73 ASN H2 H N N 74 ASN HA H N N 75 ASN HB2 H N N 76 ASN HB3 H N N 77 ASN HD21 H N N 78 ASN HD22 H N N 79 ASN HXT H N N 80 ASP N N N N 81 ASP CA C N S 82 ASP C C N N 83 ASP O O N N 84 ASP CB C N N 85 ASP CG C N N 86 ASP OD1 O N N 87 ASP OD2 O N N 88 ASP OXT O N N 89 ASP H H N N 90 ASP H2 H N N 91 ASP HA H N N 92 ASP HB2 H N N 93 ASP HB3 H N N 94 ASP HD2 H N N 95 ASP HXT H N N 96 CYS N N N N 97 CYS CA C N R 98 CYS C C N N 99 CYS O O N N 100 CYS CB C N N 101 CYS SG S N N 102 CYS OXT O N N 103 CYS H H N N 104 CYS H2 H N N 105 CYS HA H N N 106 CYS HB2 H N N 107 CYS HB3 H N N 108 CYS HG H N N 109 CYS HXT H N N 110 DA OP3 O N N 111 DA P P N N 112 DA OP1 O N N 113 DA OP2 O N N 114 DA "O5'" O N N 115 DA "C5'" C N N 116 DA "C4'" C N R 117 DA "O4'" O N N 118 DA "C3'" C N S 119 DA "O3'" O N N 120 DA "C2'" C N N 121 DA "C1'" C N R 122 DA N9 N Y N 123 DA C8 C Y N 124 DA N7 N Y N 125 DA C5 C Y N 126 DA C6 C Y N 127 DA N6 N N N 128 DA N1 N Y N 129 DA C2 C Y N 130 DA N3 N Y N 131 DA C4 C Y N 132 DA HOP3 H N N 133 DA HOP2 H N N 134 DA "H5'" H N N 135 DA "H5''" H N N 136 DA "H4'" H N N 137 DA "H3'" H N N 138 DA "HO3'" H N N 139 DA "H2'" H N N 140 DA "H2''" H N N 141 DA "H1'" H N N 142 DA H8 H N N 143 DA H61 H N N 144 DA H62 H N N 145 DA H2 H N N 146 DC OP3 O N N 147 DC P P N N 148 DC OP1 O N N 149 DC OP2 O N N 150 DC "O5'" O N N 151 DC "C5'" C N N 152 DC "C4'" C N R 153 DC "O4'" O N N 154 DC "C3'" C N S 155 DC "O3'" O N N 156 DC "C2'" C N N 157 DC "C1'" C N R 158 DC N1 N N N 159 DC C2 C N N 160 DC O2 O N N 161 DC N3 N N N 162 DC C4 C N N 163 DC N4 N N N 164 DC C5 C N N 165 DC C6 C N N 166 DC HOP3 H N N 167 DC HOP2 H N N 168 DC "H5'" H N N 169 DC "H5''" H N N 170 DC "H4'" H N N 171 DC "H3'" H N N 172 DC "HO3'" H N N 173 DC "H2'" H N N 174 DC "H2''" H N N 175 DC "H1'" H N N 176 DC H41 H N N 177 DC H42 H N N 178 DC H5 H N N 179 DC H6 H N N 180 DG OP3 O N N 181 DG P P N N 182 DG OP1 O N N 183 DG OP2 O N N 184 DG "O5'" O N N 185 DG "C5'" C N N 186 DG "C4'" C N R 187 DG "O4'" O N N 188 DG "C3'" C N S 189 DG "O3'" O N N 190 DG "C2'" C N N 191 DG "C1'" C N R 192 DG N9 N Y N 193 DG C8 C Y N 194 DG N7 N Y N 195 DG C5 C Y N 196 DG C6 C N N 197 DG O6 O N N 198 DG N1 N N N 199 DG C2 C N N 200 DG N2 N N N 201 DG N3 N N N 202 DG C4 C Y N 203 DG HOP3 H N N 204 DG HOP2 H N N 205 DG "H5'" H N N 206 DG "H5''" H N N 207 DG "H4'" H N N 208 DG "H3'" H N N 209 DG "HO3'" H N N 210 DG "H2'" H N N 211 DG "H2''" H N N 212 DG "H1'" H N N 213 DG H8 H N N 214 DG H1 H N N 215 DG H21 H N N 216 DG H22 H N N 217 DT OP3 O N N 218 DT P P N N 219 DT OP1 O N N 220 DT OP2 O N N 221 DT "O5'" O N N 222 DT "C5'" C N N 223 DT "C4'" C N R 224 DT "O4'" O N N 225 DT "C3'" C N S 226 DT "O3'" O N N 227 DT "C2'" C N N 228 DT "C1'" C N R 229 DT N1 N N N 230 DT C2 C N N 231 DT O2 O N N 232 DT N3 N N N 233 DT C4 C N N 234 DT O4 O N N 235 DT C5 C N N 236 DT C7 C N N 237 DT C6 C N N 238 DT HOP3 H N N 239 DT HOP2 H N N 240 DT "H5'" H N N 241 DT "H5''" H N N 242 DT "H4'" H N N 243 DT "H3'" H N N 244 DT "HO3'" H N N 245 DT "H2'" H N N 246 DT "H2''" H N N 247 DT "H1'" H N N 248 DT H3 H N N 249 DT H71 H N N 250 DT H72 H N N 251 DT H73 H N N 252 DT H6 H N N 253 GLN N N N N 254 GLN CA C N S 255 GLN C C N N 256 GLN O O N N 257 GLN CB C N N 258 GLN CG C N N 259 GLN CD C N N 260 GLN OE1 O N N 261 GLN NE2 N N N 262 GLN OXT O N N 263 GLN H H N N 264 GLN H2 H N N 265 GLN HA H N N 266 GLN HB2 H N N 267 GLN HB3 H N N 268 GLN HG2 H N N 269 GLN HG3 H N N 270 GLN HE21 H N N 271 GLN HE22 H N N 272 GLN HXT H N N 273 GLU N N N N 274 GLU CA C N S 275 GLU C C N N 276 GLU O O N N 277 GLU CB C N N 278 GLU CG C N N 279 GLU CD C N N 280 GLU OE1 O N N 281 GLU OE2 O N N 282 GLU OXT O N N 283 GLU H H N N 284 GLU H2 H N N 285 GLU HA H N N 286 GLU HB2 H N N 287 GLU HB3 H N N 288 GLU HG2 H N N 289 GLU HG3 H N N 290 GLU HE2 H N N 291 GLU HXT H N N 292 GLY N N N N 293 GLY CA C N N 294 GLY C C N N 295 GLY O O N N 296 GLY OXT O N N 297 GLY H H N N 298 GLY H2 H N N 299 GLY HA2 H N N 300 GLY HA3 H N N 301 GLY HXT H N N 302 HIS N N N N 303 HIS CA C N S 304 HIS C C N N 305 HIS O O N N 306 HIS CB C N N 307 HIS CG C Y N 308 HIS ND1 N Y N 309 HIS CD2 C Y N 310 HIS CE1 C Y N 311 HIS NE2 N Y N 312 HIS OXT O N N 313 HIS H H N N 314 HIS H2 H N N 315 HIS HA H N N 316 HIS HB2 H N N 317 HIS HB3 H N N 318 HIS HD1 H N N 319 HIS HD2 H N N 320 HIS HE1 H N N 321 HIS HE2 H N N 322 HIS HXT H N N 323 HOH O O N N 324 HOH H1 H N N 325 HOH H2 H N N 326 ILE N N N N 327 ILE CA C N S 328 ILE C C N N 329 ILE O O N N 330 ILE CB C N S 331 ILE CG1 C N N 332 ILE CG2 C N N 333 ILE CD1 C N N 334 ILE OXT O N N 335 ILE H H N N 336 ILE H2 H N N 337 ILE HA H N N 338 ILE HB H N N 339 ILE HG12 H N N 340 ILE HG13 H N N 341 ILE HG21 H N N 342 ILE HG22 H N N 343 ILE HG23 H N N 344 ILE HD11 H N N 345 ILE HD12 H N N 346 ILE HD13 H N N 347 ILE HXT H N N 348 LEU N N N N 349 LEU CA C N S 350 LEU C C N N 351 LEU O O N N 352 LEU CB C N N 353 LEU CG C N N 354 LEU CD1 C N N 355 LEU CD2 C N N 356 LEU OXT O N N 357 LEU H H N N 358 LEU H2 H N N 359 LEU HA H N N 360 LEU HB2 H N N 361 LEU HB3 H N N 362 LEU HG H N N 363 LEU HD11 H N N 364 LEU HD12 H N N 365 LEU HD13 H N N 366 LEU HD21 H N N 367 LEU HD22 H N N 368 LEU HD23 H N N 369 LEU HXT H N N 370 LYS N N N N 371 LYS CA C N S 372 LYS C C N N 373 LYS O O N N 374 LYS CB C N N 375 LYS CG C N N 376 LYS CD C N N 377 LYS CE C N N 378 LYS NZ N N N 379 LYS OXT O N N 380 LYS H H N N 381 LYS H2 H N N 382 LYS HA H N N 383 LYS HB2 H N N 384 LYS HB3 H N N 385 LYS HG2 H N N 386 LYS HG3 H N N 387 LYS HD2 H N N 388 LYS HD3 H N N 389 LYS HE2 H N N 390 LYS HE3 H N N 391 LYS HZ1 H N N 392 LYS HZ2 H N N 393 LYS HZ3 H N N 394 LYS HXT H N N 395 MET N N N N 396 MET CA C N S 397 MET C C N N 398 MET O O N N 399 MET CB C N N 400 MET CG C N N 401 MET SD S N N 402 MET CE C N N 403 MET OXT O N N 404 MET H H N N 405 MET H2 H N N 406 MET HA H N N 407 MET HB2 H N N 408 MET HB3 H N N 409 MET HG2 H N N 410 MET HG3 H N N 411 MET HE1 H N N 412 MET HE2 H N N 413 MET HE3 H N N 414 MET HXT H N N 415 NI NI NI N N 416 PHE N N N N 417 PHE CA C N S 418 PHE C C N N 419 PHE O O N N 420 PHE CB C N N 421 PHE CG C Y N 422 PHE CD1 C Y N 423 PHE CD2 C Y N 424 PHE CE1 C Y N 425 PHE CE2 C Y N 426 PHE CZ C Y N 427 PHE OXT O N N 428 PHE H H N N 429 PHE H2 H N N 430 PHE HA H N N 431 PHE HB2 H N N 432 PHE HB3 H N N 433 PHE HD1 H N N 434 PHE HD2 H N N 435 PHE HE1 H N N 436 PHE HE2 H N N 437 PHE HZ H N N 438 PHE HXT H N N 439 PRO N N N N 440 PRO CA C N S 441 PRO C C N N 442 PRO O O N N 443 PRO CB C N N 444 PRO CG C N N 445 PRO CD C N N 446 PRO OXT O N N 447 PRO H H N N 448 PRO HA H N N 449 PRO HB2 H N N 450 PRO HB3 H N N 451 PRO HG2 H N N 452 PRO HG3 H N N 453 PRO HD2 H N N 454 PRO HD3 H N N 455 PRO HXT H N N 456 SER N N N N 457 SER CA C N S 458 SER C C N N 459 SER O O N N 460 SER CB C N N 461 SER OG O N N 462 SER OXT O N N 463 SER H H N N 464 SER H2 H N N 465 SER HA H N N 466 SER HB2 H N N 467 SER HB3 H N N 468 SER HG H N N 469 SER HXT H N N 470 THR N N N N 471 THR CA C N S 472 THR C C N N 473 THR O O N N 474 THR CB C N R 475 THR OG1 O N N 476 THR CG2 C N N 477 THR OXT O N N 478 THR H H N N 479 THR H2 H N N 480 THR HA H N N 481 THR HB H N N 482 THR HG1 H N N 483 THR HG21 H N N 484 THR HG22 H N N 485 THR HG23 H N N 486 THR HXT H N N 487 TRP N N N N 488 TRP CA C N S 489 TRP C C N N 490 TRP O O N N 491 TRP CB C N N 492 TRP CG C Y N 493 TRP CD1 C Y N 494 TRP CD2 C Y N 495 TRP NE1 N Y N 496 TRP CE2 C Y N 497 TRP CE3 C Y N 498 TRP CZ2 C Y N 499 TRP CZ3 C Y N 500 TRP CH2 C Y N 501 TRP OXT O N N 502 TRP H H N N 503 TRP H2 H N N 504 TRP HA H N N 505 TRP HB2 H N N 506 TRP HB3 H N N 507 TRP HD1 H N N 508 TRP HE1 H N N 509 TRP HE3 H N N 510 TRP HZ2 H N N 511 TRP HZ3 H N N 512 TRP HH2 H N N 513 TRP HXT H N N 514 TYR N N N N 515 TYR CA C N S 516 TYR C C N N 517 TYR O O N N 518 TYR CB C N N 519 TYR CG C Y N 520 TYR CD1 C Y N 521 TYR CD2 C Y N 522 TYR CE1 C Y N 523 TYR CE2 C Y N 524 TYR CZ C Y N 525 TYR OH O N N 526 TYR OXT O N N 527 TYR H H N N 528 TYR H2 H N N 529 TYR HA H N N 530 TYR HB2 H N N 531 TYR HB3 H N N 532 TYR HD1 H N N 533 TYR HD2 H N N 534 TYR HE1 H N N 535 TYR HE2 H N N 536 TYR HH H N N 537 TYR HXT H N N 538 VAL N N N N 539 VAL CA C N S 540 VAL C C N N 541 VAL O O N N 542 VAL CB C N N 543 VAL CG1 C N N 544 VAL CG2 C N N 545 VAL OXT O N N 546 VAL H H N N 547 VAL H2 H N N 548 VAL HA H N N 549 VAL HB H N N 550 VAL HG11 H N N 551 VAL HG12 H N N 552 VAL HG13 H N N 553 VAL HG21 H N N 554 VAL HG22 H N N 555 VAL HG23 H N N 556 VAL HXT H N N 557 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3DR "O5'" P sing N N 1 3DR "O5'" "C5'" sing N N 2 3DR P OP1 doub N N 3 3DR P OP2 sing N N 4 3DR P OP3 sing N N 5 3DR OP2 HOP2 sing N N 6 3DR OP3 HOP3 sing N N 7 3DR "C2'" "C1'" sing N N 8 3DR "C2'" "C3'" sing N N 9 3DR "C2'" "H2'" sing N N 10 3DR "C2'" "H2''" sing N N 11 3DR "C5'" "C4'" sing N N 12 3DR "C5'" "H5'" sing N N 13 3DR "C5'" "H5''" sing N N 14 3DR "C4'" "O4'" sing N N 15 3DR "C4'" "C3'" sing N N 16 3DR "C4'" "H4'1" sing N N 17 3DR "O4'" "C1'" sing N N 18 3DR "C1'" "H1'1" sing N N 19 3DR "C1'" "H1'2" sing N N 20 3DR "C3'" "O3'" sing N N 21 3DR "C3'" "H3'" sing N N 22 3DR "O3'" "HO3'" sing N N 23 ALA N CA sing N N 24 ALA N H sing N N 25 ALA N H2 sing N N 26 ALA CA C sing N N 27 ALA CA CB sing N N 28 ALA CA HA sing N N 29 ALA C O doub N N 30 ALA C OXT sing N N 31 ALA CB HB1 sing N N 32 ALA CB HB2 sing N N 33 ALA CB HB3 sing N N 34 ALA OXT HXT sing N N 35 ARG N CA sing N N 36 ARG N H sing N N 37 ARG N H2 sing N N 38 ARG CA C sing N N 39 ARG CA CB sing N N 40 ARG CA HA sing N N 41 ARG C O doub N N 42 ARG C OXT sing N N 43 ARG CB CG sing N N 44 ARG CB HB2 sing N N 45 ARG CB HB3 sing N N 46 ARG CG CD sing N N 47 ARG CG HG2 sing N N 48 ARG CG HG3 sing N N 49 ARG CD NE sing N N 50 ARG CD HD2 sing N N 51 ARG CD HD3 sing N N 52 ARG NE CZ sing N N 53 ARG NE HE sing N N 54 ARG CZ NH1 sing N N 55 ARG CZ NH2 doub N N 56 ARG NH1 HH11 sing N N 57 ARG NH1 HH12 sing N N 58 ARG NH2 HH21 sing N N 59 ARG NH2 HH22 sing N N 60 ARG OXT HXT sing N N 61 ASN N CA sing N N 62 ASN N H sing N N 63 ASN N H2 sing N N 64 ASN CA C sing N N 65 ASN CA CB sing N N 66 ASN CA HA sing N N 67 ASN C O doub N N 68 ASN C OXT sing N N 69 ASN CB CG sing N N 70 ASN CB HB2 sing N N 71 ASN CB HB3 sing N N 72 ASN CG OD1 doub N N 73 ASN CG ND2 sing N N 74 ASN ND2 HD21 sing N N 75 ASN ND2 HD22 sing N N 76 ASN OXT HXT sing N N 77 ASP N CA sing N N 78 ASP N H sing N N 79 ASP N H2 sing N N 80 ASP CA C sing N N 81 ASP CA CB sing N N 82 ASP CA HA sing N N 83 ASP C O doub N N 84 ASP C OXT sing N N 85 ASP CB CG sing N N 86 ASP CB HB2 sing N N 87 ASP CB HB3 sing N N 88 ASP CG OD1 doub N N 89 ASP CG OD2 sing N N 90 ASP OD2 HD2 sing N N 91 ASP OXT HXT sing N N 92 CYS N CA sing N N 93 CYS N H sing N N 94 CYS N H2 sing N N 95 CYS CA C sing N N 96 CYS CA CB sing N N 97 CYS CA HA sing N N 98 CYS C O doub N N 99 CYS C OXT sing N N 100 CYS CB SG sing N N 101 CYS CB HB2 sing N N 102 CYS CB HB3 sing N N 103 CYS SG HG sing N N 104 CYS OXT HXT sing N N 105 DA OP3 P sing N N 106 DA OP3 HOP3 sing N N 107 DA P OP1 doub N N 108 DA P OP2 sing N N 109 DA P "O5'" sing N N 110 DA OP2 HOP2 sing N N 111 DA "O5'" "C5'" sing N N 112 DA "C5'" "C4'" sing N N 113 DA "C5'" "H5'" sing N N 114 DA "C5'" "H5''" sing N N 115 DA "C4'" "O4'" sing N N 116 DA "C4'" "C3'" sing N N 117 DA "C4'" "H4'" sing N N 118 DA "O4'" "C1'" sing N N 119 DA "C3'" "O3'" sing N N 120 DA "C3'" "C2'" sing N N 121 DA "C3'" "H3'" sing N N 122 DA "O3'" "HO3'" sing N N 123 DA "C2'" "C1'" sing N N 124 DA "C2'" "H2'" sing N N 125 DA "C2'" "H2''" sing N N 126 DA "C1'" N9 sing N N 127 DA "C1'" "H1'" sing N N 128 DA N9 C8 sing Y N 129 DA N9 C4 sing Y N 130 DA C8 N7 doub Y N 131 DA C8 H8 sing N N 132 DA N7 C5 sing Y N 133 DA C5 C6 sing Y N 134 DA C5 C4 doub Y N 135 DA C6 N6 sing N N 136 DA C6 N1 doub Y N 137 DA N6 H61 sing N N 138 DA N6 H62 sing N N 139 DA N1 C2 sing Y N 140 DA C2 N3 doub Y N 141 DA C2 H2 sing N N 142 DA N3 C4 sing Y N 143 DC OP3 P sing N N 144 DC OP3 HOP3 sing N N 145 DC P OP1 doub N N 146 DC P OP2 sing N N 147 DC P "O5'" sing N N 148 DC OP2 HOP2 sing N N 149 DC "O5'" "C5'" sing N N 150 DC "C5'" "C4'" sing N N 151 DC "C5'" "H5'" sing N N 152 DC "C5'" "H5''" sing N N 153 DC "C4'" "O4'" sing N N 154 DC "C4'" "C3'" sing N N 155 DC "C4'" "H4'" sing N N 156 DC "O4'" "C1'" sing N N 157 DC "C3'" "O3'" sing N N 158 DC "C3'" "C2'" sing N N 159 DC "C3'" "H3'" sing N N 160 DC "O3'" "HO3'" sing N N 161 DC "C2'" "C1'" sing N N 162 DC "C2'" "H2'" sing N N 163 DC "C2'" "H2''" sing N N 164 DC "C1'" N1 sing N N 165 DC "C1'" "H1'" sing N N 166 DC N1 C2 sing N N 167 DC N1 C6 sing N N 168 DC C2 O2 doub N N 169 DC C2 N3 sing N N 170 DC N3 C4 doub N N 171 DC C4 N4 sing N N 172 DC C4 C5 sing N N 173 DC N4 H41 sing N N 174 DC N4 H42 sing N N 175 DC C5 C6 doub N N 176 DC C5 H5 sing N N 177 DC C6 H6 sing N N 178 DG OP3 P sing N N 179 DG OP3 HOP3 sing N N 180 DG P OP1 doub N N 181 DG P OP2 sing N N 182 DG P "O5'" sing N N 183 DG OP2 HOP2 sing N N 184 DG "O5'" "C5'" sing N N 185 DG "C5'" "C4'" sing N N 186 DG "C5'" "H5'" sing N N 187 DG "C5'" "H5''" sing N N 188 DG "C4'" "O4'" sing N N 189 DG "C4'" "C3'" sing N N 190 DG "C4'" "H4'" sing N N 191 DG "O4'" "C1'" sing N N 192 DG "C3'" "O3'" sing N N 193 DG "C3'" "C2'" sing N N 194 DG "C3'" "H3'" sing N N 195 DG "O3'" "HO3'" sing N N 196 DG "C2'" "C1'" sing N N 197 DG "C2'" "H2'" sing N N 198 DG "C2'" "H2''" sing N N 199 DG "C1'" N9 sing N N 200 DG "C1'" "H1'" sing N N 201 DG N9 C8 sing Y N 202 DG N9 C4 sing Y N 203 DG C8 N7 doub Y N 204 DG C8 H8 sing N N 205 DG N7 C5 sing Y N 206 DG C5 C6 sing N N 207 DG C5 C4 doub Y N 208 DG C6 O6 doub N N 209 DG C6 N1 sing N N 210 DG N1 C2 sing N N 211 DG N1 H1 sing N N 212 DG C2 N2 sing N N 213 DG C2 N3 doub N N 214 DG N2 H21 sing N N 215 DG N2 H22 sing N N 216 DG N3 C4 sing N N 217 DT OP3 P sing N N 218 DT OP3 HOP3 sing N N 219 DT P OP1 doub N N 220 DT P OP2 sing N N 221 DT P "O5'" sing N N 222 DT OP2 HOP2 sing N N 223 DT "O5'" "C5'" sing N N 224 DT "C5'" "C4'" sing N N 225 DT "C5'" "H5'" sing N N 226 DT "C5'" "H5''" sing N N 227 DT "C4'" "O4'" sing N N 228 DT "C4'" "C3'" sing N N 229 DT "C4'" "H4'" sing N N 230 DT "O4'" "C1'" sing N N 231 DT "C3'" "O3'" sing N N 232 DT "C3'" "C2'" sing N N 233 DT "C3'" "H3'" sing N N 234 DT "O3'" "HO3'" sing N N 235 DT "C2'" "C1'" sing N N 236 DT "C2'" "H2'" sing N N 237 DT "C2'" "H2''" sing N N 238 DT "C1'" N1 sing N N 239 DT "C1'" "H1'" sing N N 240 DT N1 C2 sing N N 241 DT N1 C6 sing N N 242 DT C2 O2 doub N N 243 DT C2 N3 sing N N 244 DT N3 C4 sing N N 245 DT N3 H3 sing N N 246 DT C4 O4 doub N N 247 DT C4 C5 sing N N 248 DT C5 C7 sing N N 249 DT C5 C6 doub N N 250 DT C7 H71 sing N N 251 DT C7 H72 sing N N 252 DT C7 H73 sing N N 253 DT C6 H6 sing N N 254 GLN N CA sing N N 255 GLN N H sing N N 256 GLN N H2 sing N N 257 GLN CA C sing N N 258 GLN CA CB sing N N 259 GLN CA HA sing N N 260 GLN C O doub N N 261 GLN C OXT sing N N 262 GLN CB CG sing N N 263 GLN CB HB2 sing N N 264 GLN CB HB3 sing N N 265 GLN CG CD sing N N 266 GLN CG HG2 sing N N 267 GLN CG HG3 sing N N 268 GLN CD OE1 doub N N 269 GLN CD NE2 sing N N 270 GLN NE2 HE21 sing N N 271 GLN NE2 HE22 sing N N 272 GLN OXT HXT sing N N 273 GLU N CA sing N N 274 GLU N H sing N N 275 GLU N H2 sing N N 276 GLU CA C sing N N 277 GLU CA CB sing N N 278 GLU CA HA sing N N 279 GLU C O doub N N 280 GLU C OXT sing N N 281 GLU CB CG sing N N 282 GLU CB HB2 sing N N 283 GLU CB HB3 sing N N 284 GLU CG CD sing N N 285 GLU CG HG2 sing N N 286 GLU CG HG3 sing N N 287 GLU CD OE1 doub N N 288 GLU CD OE2 sing N N 289 GLU OE2 HE2 sing N N 290 GLU OXT HXT sing N N 291 GLY N CA sing N N 292 GLY N H sing N N 293 GLY N H2 sing N N 294 GLY CA C sing N N 295 GLY CA HA2 sing N N 296 GLY CA HA3 sing N N 297 GLY C O doub N N 298 GLY C OXT sing N N 299 GLY OXT HXT sing N N 300 HIS N CA sing N N 301 HIS N H sing N N 302 HIS N H2 sing N N 303 HIS CA C sing N N 304 HIS CA CB sing N N 305 HIS CA HA sing N N 306 HIS C O doub N N 307 HIS C OXT sing N N 308 HIS CB CG sing N N 309 HIS CB HB2 sing N N 310 HIS CB HB3 sing N N 311 HIS CG ND1 sing Y N 312 HIS CG CD2 doub Y N 313 HIS ND1 CE1 doub Y N 314 HIS ND1 HD1 sing N N 315 HIS CD2 NE2 sing Y N 316 HIS CD2 HD2 sing N N 317 HIS CE1 NE2 sing Y N 318 HIS CE1 HE1 sing N N 319 HIS NE2 HE2 sing N N 320 HIS OXT HXT sing N N 321 HOH O H1 sing N N 322 HOH O H2 sing N N 323 ILE N CA sing N N 324 ILE N H sing N N 325 ILE N H2 sing N N 326 ILE CA C sing N N 327 ILE CA CB sing N N 328 ILE CA HA sing N N 329 ILE C O doub N N 330 ILE C OXT sing N N 331 ILE CB CG1 sing N N 332 ILE CB CG2 sing N N 333 ILE CB HB sing N N 334 ILE CG1 CD1 sing N N 335 ILE CG1 HG12 sing N N 336 ILE CG1 HG13 sing N N 337 ILE CG2 HG21 sing N N 338 ILE CG2 HG22 sing N N 339 ILE CG2 HG23 sing N N 340 ILE CD1 HD11 sing N N 341 ILE CD1 HD12 sing N N 342 ILE CD1 HD13 sing N N 343 ILE OXT HXT sing N N 344 LEU N CA sing N N 345 LEU N H sing N N 346 LEU N H2 sing N N 347 LEU CA C sing N N 348 LEU CA CB sing N N 349 LEU CA HA sing N N 350 LEU C O doub N N 351 LEU C OXT sing N N 352 LEU CB CG sing N N 353 LEU CB HB2 sing N N 354 LEU CB HB3 sing N N 355 LEU CG CD1 sing N N 356 LEU CG CD2 sing N N 357 LEU CG HG sing N N 358 LEU CD1 HD11 sing N N 359 LEU CD1 HD12 sing N N 360 LEU CD1 HD13 sing N N 361 LEU CD2 HD21 sing N N 362 LEU CD2 HD22 sing N N 363 LEU CD2 HD23 sing N N 364 LEU OXT HXT sing N N 365 LYS N CA sing N N 366 LYS N H sing N N 367 LYS N H2 sing N N 368 LYS CA C sing N N 369 LYS CA CB sing N N 370 LYS CA HA sing N N 371 LYS C O doub N N 372 LYS C OXT sing N N 373 LYS CB CG sing N N 374 LYS CB HB2 sing N N 375 LYS CB HB3 sing N N 376 LYS CG CD sing N N 377 LYS CG HG2 sing N N 378 LYS CG HG3 sing N N 379 LYS CD CE sing N N 380 LYS CD HD2 sing N N 381 LYS CD HD3 sing N N 382 LYS CE NZ sing N N 383 LYS CE HE2 sing N N 384 LYS CE HE3 sing N N 385 LYS NZ HZ1 sing N N 386 LYS NZ HZ2 sing N N 387 LYS NZ HZ3 sing N N 388 LYS OXT HXT sing N N 389 MET N CA sing N N 390 MET N H sing N N 391 MET N H2 sing N N 392 MET CA C sing N N 393 MET CA CB sing N N 394 MET CA HA sing N N 395 MET C O doub N N 396 MET C OXT sing N N 397 MET CB CG sing N N 398 MET CB HB2 sing N N 399 MET CB HB3 sing N N 400 MET CG SD sing N N 401 MET CG HG2 sing N N 402 MET CG HG3 sing N N 403 MET SD CE sing N N 404 MET CE HE1 sing N N 405 MET CE HE2 sing N N 406 MET CE HE3 sing N N 407 MET OXT HXT sing N N 408 PHE N CA sing N N 409 PHE N H sing N N 410 PHE N H2 sing N N 411 PHE CA C sing N N 412 PHE CA CB sing N N 413 PHE CA HA sing N N 414 PHE C O doub N N 415 PHE C OXT sing N N 416 PHE CB CG sing N N 417 PHE CB HB2 sing N N 418 PHE CB HB3 sing N N 419 PHE CG CD1 doub Y N 420 PHE CG CD2 sing Y N 421 PHE CD1 CE1 sing Y N 422 PHE CD1 HD1 sing N N 423 PHE CD2 CE2 doub Y N 424 PHE CD2 HD2 sing N N 425 PHE CE1 CZ doub Y N 426 PHE CE1 HE1 sing N N 427 PHE CE2 CZ sing Y N 428 PHE CE2 HE2 sing N N 429 PHE CZ HZ sing N N 430 PHE OXT HXT sing N N 431 PRO N CA sing N N 432 PRO N CD sing N N 433 PRO N H sing N N 434 PRO CA C sing N N 435 PRO CA CB sing N N 436 PRO CA HA sing N N 437 PRO C O doub N N 438 PRO C OXT sing N N 439 PRO CB CG sing N N 440 PRO CB HB2 sing N N 441 PRO CB HB3 sing N N 442 PRO CG CD sing N N 443 PRO CG HG2 sing N N 444 PRO CG HG3 sing N N 445 PRO CD HD2 sing N N 446 PRO CD HD3 sing N N 447 PRO OXT HXT sing N N 448 SER N CA sing N N 449 SER N H sing N N 450 SER N H2 sing N N 451 SER CA C sing N N 452 SER CA CB sing N N 453 SER CA HA sing N N 454 SER C O doub N N 455 SER C OXT sing N N 456 SER CB OG sing N N 457 SER CB HB2 sing N N 458 SER CB HB3 sing N N 459 SER OG HG sing N N 460 SER OXT HXT sing N N 461 THR N CA sing N N 462 THR N H sing N N 463 THR N H2 sing N N 464 THR CA C sing N N 465 THR CA CB sing N N 466 THR CA HA sing N N 467 THR C O doub N N 468 THR C OXT sing N N 469 THR CB OG1 sing N N 470 THR CB CG2 sing N N 471 THR CB HB sing N N 472 THR OG1 HG1 sing N N 473 THR CG2 HG21 sing N N 474 THR CG2 HG22 sing N N 475 THR CG2 HG23 sing N N 476 THR OXT HXT sing N N 477 TRP N CA sing N N 478 TRP N H sing N N 479 TRP N H2 sing N N 480 TRP CA C sing N N 481 TRP CA CB sing N N 482 TRP CA HA sing N N 483 TRP C O doub N N 484 TRP C OXT sing N N 485 TRP CB CG sing N N 486 TRP CB HB2 sing N N 487 TRP CB HB3 sing N N 488 TRP CG CD1 doub Y N 489 TRP CG CD2 sing Y N 490 TRP CD1 NE1 sing Y N 491 TRP CD1 HD1 sing N N 492 TRP CD2 CE2 doub Y N 493 TRP CD2 CE3 sing Y N 494 TRP NE1 CE2 sing Y N 495 TRP NE1 HE1 sing N N 496 TRP CE2 CZ2 sing Y N 497 TRP CE3 CZ3 doub Y N 498 TRP CE3 HE3 sing N N 499 TRP CZ2 CH2 doub Y N 500 TRP CZ2 HZ2 sing N N 501 TRP CZ3 CH2 sing Y N 502 TRP CZ3 HZ3 sing N N 503 TRP CH2 HH2 sing N N 504 TRP OXT HXT sing N N 505 TYR N CA sing N N 506 TYR N H sing N N 507 TYR N H2 sing N N 508 TYR CA C sing N N 509 TYR CA CB sing N N 510 TYR CA HA sing N N 511 TYR C O doub N N 512 TYR C OXT sing N N 513 TYR CB CG sing N N 514 TYR CB HB2 sing N N 515 TYR CB HB3 sing N N 516 TYR CG CD1 doub Y N 517 TYR CG CD2 sing Y N 518 TYR CD1 CE1 sing Y N 519 TYR CD1 HD1 sing N N 520 TYR CD2 CE2 doub Y N 521 TYR CD2 HD2 sing N N 522 TYR CE1 CZ doub Y N 523 TYR CE1 HE1 sing N N 524 TYR CE2 CZ sing Y N 525 TYR CE2 HE2 sing N N 526 TYR CZ OH sing N N 527 TYR OH HH sing N N 528 TYR OXT HXT sing N N 529 VAL N CA sing N N 530 VAL N H sing N N 531 VAL N H2 sing N N 532 VAL CA C sing N N 533 VAL CA CB sing N N 534 VAL CA HA sing N N 535 VAL C O doub N N 536 VAL C OXT sing N N 537 VAL CB CG1 sing N N 538 VAL CB CG2 sing N N 539 VAL CB HB sing N N 540 VAL CG1 HG11 sing N N 541 VAL CG1 HG12 sing N N 542 VAL CG1 HG13 sing N N 543 VAL CG2 HG21 sing N N 544 VAL CG2 HG22 sing N N 545 VAL CG2 HG23 sing N N 546 VAL OXT HXT sing N N 547 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4EW4 'double helix' 4EW4 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DT 1 1_555 C DA 11 1_555 -0.254 -0.394 -0.104 -20.757 5.328 -8.018 1 B_DT1:DA22_C B 1 ? C 22 ? 20 1 1 B DC 2 1_555 C DG 10 1_555 0.186 -0.119 0.205 -9.447 -3.257 3.744 2 B_DC2:DG21_C B 2 ? C 21 ? 19 1 1 B DA 3 1_555 C DT 9 1_555 0.227 0.087 -0.024 -12.113 -20.949 -6.964 3 B_DA3:DT20_C B 3 ? C 20 ? 20 1 1 B DG 4 1_555 C DC 8 1_555 -0.304 -0.232 0.393 0.302 -11.041 1.040 4 B_DG4:DC19_C B 4 ? C 19 ? 19 1 1 B DC 5 1_555 C DG 7 1_555 0.710 0.315 -0.433 15.969 -10.620 0.363 5 B_DC5:DG18_C B 5 ? C 18 ? 19 1 1 B DC 7 1_555 C DG 5 1_555 -0.808 -0.039 0.328 2.144 -11.035 4.235 6 B_DC7:DG16_C B 7 ? C 16 ? 19 1 1 B DA 8 1_555 C DT 4 1_555 0.224 -0.152 0.024 -2.689 4.281 8.319 7 B_DA8:DT15_C B 8 ? C 15 ? 20 1 1 B DT 9 1_555 C DA 3 1_555 -0.326 -0.425 0.649 5.419 -17.400 -4.677 8 B_DT9:DA14_C B 9 ? C 14 ? 20 1 1 B DG 10 1_555 C DC 2 1_555 -0.381 -0.142 -0.125 -8.538 -6.068 -5.554 9 B_DG10:DC13_C B 10 ? C 13 ? 19 1 1 B DG 11 1_555 C DC 1 1_555 0.507 -0.339 0.387 5.190 -18.195 -0.345 10 B_DG11:DC12_C B 11 ? C 12 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DT 1 1_555 C DA 11 1_555 B DC 2 1_555 C DG 10 1_555 -0.081 -0.784 3.135 -1.104 0.219 30.530 -1.530 -0.056 3.130 0.416 2.096 30.550 1 BB_DT1DC2:DG21DA22_CC B 1 ? C 22 ? B 2 ? C 21 ? 1 B DC 2 1_555 C DG 10 1_555 B DA 3 1_555 C DT 9 1_555 -1.135 1.274 3.578 -2.340 -1.711 38.365 2.167 1.405 3.581 -2.599 3.554 38.470 2 BB_DC2DA3:DT20DG21_CC B 2 ? C 21 ? B 3 ? C 20 ? 1 B DA 3 1_555 C DT 9 1_555 B DG 4 1_555 C DC 8 1_555 0.706 -0.228 2.919 -2.436 2.931 27.576 -1.092 -1.981 2.808 6.111 5.079 27.833 3 BB_DA3DG4:DC19DT20_CC B 3 ? C 20 ? B 4 ? C 19 ? 1 B DG 4 1_555 C DC 8 1_555 B DC 5 1_555 C DG 7 1_555 0.058 0.423 2.943 6.416 1.374 33.519 0.524 0.821 2.919 2.354 -10.994 34.137 4 BB_DG4DC5:DG18DC19_CC B 4 ? C 19 ? B 5 ? C 18 ? 1 B DC 7 1_555 C DG 5 1_555 B DA 8 1_555 C DT 4 1_555 0.347 0.369 3.507 1.180 4.488 44.561 0.044 -0.340 3.534 5.900 -1.551 44.790 5 BB_DC7DA8:DT15DG16_CC B 7 ? C 16 ? B 8 ? C 15 ? 1 B DA 8 1_555 C DT 4 1_555 B DT 9 1_555 C DA 3 1_555 -0.682 -0.420 3.254 -6.118 3.804 26.423 -1.840 -0.090 3.236 8.132 13.077 27.370 6 BB_DA8DT9:DA14DT15_CC B 8 ? C 15 ? B 9 ? C 14 ? 1 B DT 9 1_555 C DA 3 1_555 B DG 10 1_555 C DC 2 1_555 -0.313 -0.209 3.589 4.078 -1.833 39.932 -0.076 0.963 3.547 -2.674 -5.949 40.171 7 BB_DT9DG10:DC13DA14_CC B 9 ? C 14 ? B 10 ? C 13 ? 1 B DG 10 1_555 C DC 2 1_555 B DG 11 1_555 C DC 1 1_555 0.161 0.278 3.005 -6.782 2.148 41.426 0.184 -0.870 2.954 3.009 9.503 42.006 8 BB_DG10DG11:DC12DC13_CC B 10 ? C 13 ? B 11 ? C 12 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'NICKEL (II) ION' NI 5 'UNKNOWN ATOM OR ION' UNX 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1NGN _pdbx_initial_refinement_model.details 'PDB ENTRY 1NGN' #