HEADER TRANSFERASE/DNA 01-MAY-12 4EYH TITLE HUMAN DNA POLYMERASE IOTA INCORPORATING DCTP OPPOSITE N- TITLE 2 (DEOXYGUANOSIN-8-YL)-1-AMINOPYRENE LESION COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE IOTA; COMPND 3 CHAIN: B; COMPND 4 FRAGMENT: UNP RESIDUES 26-445; COMPND 5 SYNONYM: ETA2, RAD30 HOMOLOG B; COMPND 6 EC: 2.7.7.7; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA TEMPLATE; COMPND 10 CHAIN: T; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA PRIMER; COMPND 14 CHAIN: P; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: POLI, RAD30B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 OTHER_DETAILS: SYNTHESIZED; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: SYNTHESIZED KEYWDS DNA POLYMERASE, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.KIROUAC,H.LING REVDAT 3 13-SEP-23 4EYH 1 REMARK LINK REVDAT 2 20-FEB-13 4EYH 1 JRNL REVDAT 1 09-JAN-13 4EYH 0 JRNL AUTH K.N.KIROUAC,A.K.BASU,H.LING JRNL TITL REPLICATION OF A CARCINOGENIC NITROPYRENE DNA LESION BY JRNL TITL 2 HUMAN Y-FAMILY DNA POLYMERASE. JRNL REF NUCLEIC ACIDS RES. V. 41 2060 2013 JRNL REFN ISSN 0305-1048 JRNL PMID 23268450 JRNL DOI 10.1093/NAR/GKS1296 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.09 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 12590 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.242 REMARK 3 R VALUE (WORKING SET) : 0.239 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1007 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.0950 - 5.5398 0.95 1763 153 0.2196 0.2585 REMARK 3 2 5.5398 - 4.4007 0.97 1677 136 0.2088 0.2539 REMARK 3 3 4.4007 - 3.8455 0.97 1643 143 0.2229 0.2290 REMARK 3 4 3.8455 - 3.4944 0.98 1640 129 0.2580 0.3296 REMARK 3 5 3.4944 - 3.2442 0.98 1621 155 0.2726 0.3340 REMARK 3 6 3.2442 - 3.0530 0.98 1629 141 0.3039 0.3335 REMARK 3 7 3.0530 - 2.9000 0.99 1610 150 0.3389 0.3890 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.30 REMARK 3 SHRINKAGE RADIUS : 1.06 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 51.87 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.39430 REMARK 3 B22 (A**2) : 0.39430 REMARK 3 B33 (A**2) : -0.78860 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3289 REMARK 3 ANGLE : 1.117 4530 REMARK 3 CHIRALITY : 0.060 535 REMARK 3 PLANARITY : 0.003 525 REMARK 3 DIHEDRAL : 19.129 1235 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN B AND RESID 26:46) REMARK 3 ORIGIN FOR THE GROUP (A): -9.5332 19.9471 -14.3959 REMARK 3 T TENSOR REMARK 3 T11: 0.5839 T22: 0.6596 REMARK 3 T33: 0.7271 T12: -0.0229 REMARK 3 T13: -0.1258 T23: 0.0582 REMARK 3 L TENSOR REMARK 3 L11: 2.2131 L22: 3.8136 REMARK 3 L33: 1.5832 L12: 0.7121 REMARK 3 L13: 1.2648 L23: -4.2445 REMARK 3 S TENSOR REMARK 3 S11: 0.1401 S12: 0.6093 S13: 0.4446 REMARK 3 S21: -0.3432 S22: -0.5042 S23: -0.3330 REMARK 3 S31: 0.6130 S32: -0.0581 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN B AND RESID 47:94) REMARK 3 ORIGIN FOR THE GROUP (A): 6.6464 14.8527 -23.2468 REMARK 3 T TENSOR REMARK 3 T11: 1.4231 T22: 1.5535 REMARK 3 T33: 1.2872 T12: 0.3025 REMARK 3 T13: 0.2213 T23: 0.2193 REMARK 3 L TENSOR REMARK 3 L11: 0.4399 L22: 0.4249 REMARK 3 L33: 0.6942 L12: -0.3821 REMARK 3 L13: -0.1134 L23: -0.6122 REMARK 3 S TENSOR REMARK 3 S11: -0.2484 S12: -0.5546 S13: -0.9659 REMARK 3 S21: -0.8892 S22: -0.5887 S23: -0.7477 REMARK 3 S31: 0.6259 S32: 0.6686 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN B AND RESID 95:187) REMARK 3 ORIGIN FOR THE GROUP (A): -17.5175 19.9423 -6.6105 REMARK 3 T TENSOR REMARK 3 T11: 0.7143 T22: 0.6150 REMARK 3 T33: 0.7266 T12: -0.0269 REMARK 3 T13: -0.1326 T23: -0.0948 REMARK 3 L TENSOR REMARK 3 L11: 2.9623 L22: 2.8378 REMARK 3 L33: 3.9076 L12: -0.2930 REMARK 3 L13: 0.7583 L23: -1.1747 REMARK 3 S TENSOR REMARK 3 S11: -0.0373 S12: -0.0694 S13: 0.0378 REMARK 3 S21: 0.0908 S22: -0.2342 S23: 0.3272 REMARK 3 S31: 0.1660 S32: -0.5097 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESID 188:301) REMARK 3 ORIGIN FOR THE GROUP (A): -3.5049 30.7500 -1.5750 REMARK 3 T TENSOR REMARK 3 T11: 0.6714 T22: 0.6521 REMARK 3 T33: 0.6790 T12: 0.0170 REMARK 3 T13: -0.1228 T23: 0.0342 REMARK 3 L TENSOR REMARK 3 L11: 2.0857 L22: 3.3647 REMARK 3 L33: 3.3204 L12: 1.6391 REMARK 3 L13: 1.9054 L23: 1.6542 REMARK 3 S TENSOR REMARK 3 S11: -0.0259 S12: 0.0400 S13: 0.1968 REMARK 3 S21: 0.1120 S22: -0.1645 S23: -0.3257 REMARK 3 S31: -0.2682 S32: 0.1886 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 302:414) REMARK 3 ORIGIN FOR THE GROUP (A): -3.9659 44.0685 -34.3043 REMARK 3 T TENSOR REMARK 3 T11: 1.0780 T22: 1.2887 REMARK 3 T33: 0.9563 T12: 0.2411 REMARK 3 T13: -0.0012 T23: 0.1338 REMARK 3 L TENSOR REMARK 3 L11: 1.3900 L22: 3.6160 REMARK 3 L33: 6.8327 L12: -0.8004 REMARK 3 L13: -0.6575 L23: -2.0304 REMARK 3 S TENSOR REMARK 3 S11: 0.6078 S12: 0.4206 S13: -0.2695 REMARK 3 S21: -0.3722 S22: -0.0935 S23: 0.0131 REMARK 3 S31: 0.5636 S32: 0.7622 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN T OR CHAIN P) REMARK 3 ORIGIN FOR THE GROUP (A): -2.4863 40.0529 -17.1446 REMARK 3 T TENSOR REMARK 3 T11: 0.9753 T22: 0.9321 REMARK 3 T33: 1.1115 T12: 0.0349 REMARK 3 T13: -0.0946 T23: 0.1369 REMARK 3 L TENSOR REMARK 3 L11: 0.3438 L22: 2.2738 REMARK 3 L33: 0.7644 L12: 1.6531 REMARK 3 L13: 1.5748 L23: -2.3404 REMARK 3 S TENSOR REMARK 3 S11: -0.2901 S12: 0.7975 S13: -0.4333 REMARK 3 S21: -0.5646 S22: 0.4337 S23: -0.2264 REMARK 3 S31: 0.1651 S32: 0.2173 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4EYH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000072227. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-AUG-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12590 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 32.093 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3GV5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 5000MME, 0.2 M MH4SO4, 0.1 M REMARK 280 MES PH 6.5, 2.5% GLYCEROL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 129.76600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 64.88300 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 97.32450 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 32.44150 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 162.20750 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 129.76600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 64.88300 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 32.44150 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 97.32450 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 162.20750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, T, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 LEU B 3 REMARK 465 ALA B 4 REMARK 465 ASP B 5 REMARK 465 VAL B 6 REMARK 465 GLY B 7 REMARK 465 ALA B 8 REMARK 465 ALA B 9 REMARK 465 ALA B 10 REMARK 465 SER B 11 REMARK 465 SER B 12 REMARK 465 GLN B 13 REMARK 465 GLY B 14 REMARK 465 VAL B 15 REMARK 465 HIS B 16 REMARK 465 ASP B 17 REMARK 465 GLN B 18 REMARK 465 VAL B 19 REMARK 465 LEU B 20 REMARK 465 PRO B 21 REMARK 465 THR B 22 REMARK 465 PRO B 23 REMARK 465 ASN B 24 REMARK 465 ALA B 25 REMARK 465 TYR B 349 REMARK 465 SER B 350 REMARK 465 SER B 351 REMARK 465 GLU B 352 REMARK 465 LYS B 353 REMARK 465 HIS B 354 REMARK 465 TYR B 355 REMARK 465 LEU B 372 REMARK 465 GLY B 373 REMARK 465 THR B 374 REMARK 465 GLY B 375 REMARK 465 ASN B 376 REMARK 465 ALA B 415 REMARK 465 LEU B 416 REMARK 465 ASN B 417 REMARK 465 THR B 418 REMARK 465 ALA B 419 REMARK 465 LYS B 420 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN B 47 CG OD1 ND2 REMARK 470 GLU B 49 CG CD OE1 OE2 REMARK 470 LYS B 51 CG CD CE NZ REMARK 470 ASP B 52 CG OD1 OD2 REMARK 470 LYS B 53 CG CD CE NZ REMARK 470 LYS B 72 CG CD CE NZ REMARK 470 LYS B 76 CG CD CE NZ REMARK 470 ARG B 82 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 85 CE NZ REMARK 470 GLU B 86 CG CD OE1 OE2 REMARK 470 LYS B 87 CG CD CE NZ REMARK 470 GLN B 141 CG CD OE1 NE2 REMARK 470 GLN B 144 CG CD OE1 NE2 REMARK 470 SER B 145 OG REMARK 470 ASP B 146 CG OD1 OD2 REMARK 470 LYS B 248 CD CE NZ REMARK 470 LYS B 271 CG CD CE NZ REMARK 470 LYS B 309 CG CD CE NZ REMARK 470 LYS B 310 CG CD CE NZ REMARK 470 VAL B 315 CG1 CG2 REMARK 470 LYS B 318 CD CE NZ REMARK 470 ASN B 319 CG OD1 ND2 REMARK 470 VAL B 332 CG1 CG2 REMARK 470 GLN B 334 CG CD OE1 NE2 REMARK 470 ASP B 335 CG OD1 OD2 REMARK 470 LYS B 338 CG CD CE NZ REMARK 470 GLN B 370 CG CD OE1 NE2 REMARK 470 ASP B 385 CG OD1 OD2 REMARK 470 PHE B 391 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN B 396 CG OD1 ND2 REMARK 470 VAL B 397 CG1 CG2 REMARK 470 LYS B 398 CG CD CE NZ REMARK 470 PHE B 401 CG CD1 CD2 CE1 CE2 CZ REMARK 470 HIS B 402 CG ND1 CD2 CE1 NE2 REMARK 470 LEU B 403 CG CD1 CD2 REMARK 470 LYS B 414 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG T 841 C3' - C2' - C1' ANGL. DEV. = -6.1 DEGREES REMARK 500 DG T 841 O4' - C1' - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 DT T 847 C3' - C2' - C1' ANGL. DEV. = -5.1 DEGREES REMARK 500 DC P 872 O4' - C4' - C3' ANGL. DEV. = -3.1 DEGREES REMARK 500 DC P 872 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DC P 873 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS B 37 83.29 19.81 REMARK 500 GLU B 49 26.51 -58.09 REMARK 500 LYS B 60 -122.00 54.54 REMARK 500 CYS B 66 144.25 179.31 REMARK 500 VAL B 75 148.42 -36.46 REMARK 500 ALA B 84 -73.16 -46.08 REMARK 500 CYS B 88 74.25 -157.45 REMARK 500 GLN B 90 48.28 -89.40 REMARK 500 GLN B 141 14.18 -66.82 REMARK 500 ASN B 234 -68.16 -98.34 REMARK 500 PHE B 308 172.06 174.98 REMARK 500 CYS B 311 105.19 -168.28 REMARK 500 CYS B 333 -85.29 -53.60 REMARK 500 GLN B 334 -103.38 -32.26 REMARK 500 ASP B 335 -86.39 26.47 REMARK 500 ARG B 337 155.10 -29.08 REMARK 500 ILE B 369 89.49 -55.32 REMARK 500 GLN B 370 108.69 178.04 REMARK 500 VAL B 379 -20.89 -140.27 REMARK 500 PHE B 391 -4.69 -58.39 REMARK 500 CYS B 411 -158.06 -152.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 34 OD1 REMARK 620 2 LEU B 35 O 98.7 REMARK 620 3 DCP B 501 O3G 130.3 107.2 REMARK 620 4 DCP B 501 O2B 93.6 61.4 65.0 REMARK 620 5 HOH B 601 O 134.0 101.0 81.7 132.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 504 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 34 OD1 REMARK 620 2 GLU B 127 OE2 79.4 REMARK 620 3 DCP B 501 O1A 94.0 112.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 503 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS B 237 O REMARK 620 2 ILE B 239 O 102.5 REMARK 620 3 ILE B 242 O 86.5 79.5 REMARK 620 4 HOH B 624 O 90.0 150.1 74.1 REMARK 620 5 DC P 872 OP1 169.6 81.2 84.6 82.4 REMARK 620 6 HOH P 901 O 106.0 111.4 160.4 90.6 81.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCP B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4EYI RELATED DB: PDB DBREF 4EYH B 1 420 UNP Q9UNA4 POLI_HUMAN 26 445 DBREF 4EYH T 840 847 PDB 4EYH 4EYH 840 847 DBREF 4EYH P 867 873 PDB 4EYH 4EYH 867 873 SEQRES 1 B 420 MET GLU LEU ALA ASP VAL GLY ALA ALA ALA SER SER GLN SEQRES 2 B 420 GLY VAL HIS ASP GLN VAL LEU PRO THR PRO ASN ALA SER SEQRES 3 B 420 SER ARG VAL ILE VAL HIS VAL ASP LEU ASP CYS PHE TYR SEQRES 4 B 420 ALA GLN VAL GLU MET ILE SER ASN PRO GLU LEU LYS ASP SEQRES 5 B 420 LYS PRO LEU GLY VAL GLN GLN LYS TYR LEU VAL VAL THR SEQRES 6 B 420 CYS ASN TYR GLU ALA ARG LYS LEU GLY VAL LYS LYS LEU SEQRES 7 B 420 MET ASN VAL ARG ASP ALA LYS GLU LYS CYS PRO GLN LEU SEQRES 8 B 420 VAL LEU VAL ASN GLY GLU ASP LEU THR ARG TYR ARG GLU SEQRES 9 B 420 MET SER TYR LYS VAL THR GLU LEU LEU GLU GLU PHE SER SEQRES 10 B 420 PRO VAL VAL GLU ARG LEU GLY PHE ASP GLU ASN PHE VAL SEQRES 11 B 420 ASP LEU THR GLU MET VAL GLU LYS ARG LEU GLN GLN LEU SEQRES 12 B 420 GLN SER ASP GLU LEU SER ALA VAL THR VAL SER GLY HIS SEQRES 13 B 420 VAL TYR ASN ASN GLN SER ILE ASN LEU LEU ASP VAL LEU SEQRES 14 B 420 HIS ILE ARG LEU LEU VAL GLY SER GLN ILE ALA ALA GLU SEQRES 15 B 420 MET ARG GLU ALA MET TYR ASN GLN LEU GLY LEU THR GLY SEQRES 16 B 420 CYS ALA GLY VAL ALA SER ASN LYS LEU LEU ALA LYS LEU SEQRES 17 B 420 VAL SER GLY VAL PHE LYS PRO ASN GLN GLN THR VAL LEU SEQRES 18 B 420 LEU PRO GLU SER CYS GLN HIS LEU ILE HIS SER LEU ASN SEQRES 19 B 420 HIS ILE LYS GLU ILE PRO GLY ILE GLY TYR LYS THR ALA SEQRES 20 B 420 LYS CYS LEU GLU ALA LEU GLY ILE ASN SER VAL ARG ASP SEQRES 21 B 420 LEU GLN THR PHE SER PRO LYS ILE LEU GLU LYS GLU LEU SEQRES 22 B 420 GLY ILE SER VAL ALA GLN ARG ILE GLN LYS LEU SER PHE SEQRES 23 B 420 GLY GLU ASP ASN SER PRO VAL ILE LEU SER GLY PRO PRO SEQRES 24 B 420 GLN SER PHE SER GLU GLU ASP SER PHE LYS LYS CYS SER SEQRES 25 B 420 SER GLU VAL GLU ALA LYS ASN LYS ILE GLU GLU LEU LEU SEQRES 26 B 420 ALA SER LEU LEU ASN ARG VAL CYS GLN ASP GLY ARG LYS SEQRES 27 B 420 PRO HIS THR VAL ARG LEU ILE ILE ARG ARG TYR SER SER SEQRES 28 B 420 GLU LYS HIS TYR GLY ARG GLU SER ARG GLN CYS PRO ILE SEQRES 29 B 420 PRO SER HIS VAL ILE GLN LYS LEU GLY THR GLY ASN TYR SEQRES 30 B 420 ASP VAL MET THR PRO MET VAL ASP ILE LEU MET LYS LEU SEQRES 31 B 420 PHE ARG ASN MET VAL ASN VAL LYS MET PRO PHE HIS LEU SEQRES 32 B 420 THR LEU LEU SER VAL CYS PHE CYS ASN LEU LYS ALA LEU SEQRES 33 B 420 ASN THR ALA LYS SEQRES 1 T 8 DG8 DG DG DG DT DC DC DT SEQRES 1 P 7 DA DG DG DA DC DC DC MODRES 4EYH DG8 T 840 DG HET DG8 T 840 39 HET DCP B 501 28 HET MG B 502 1 HET MG B 503 1 HET MG B 504 1 HETNAM DG8 2'-DEOXY-8-(PYREN-1-YLAMINO)GUANOSINE 5'-(DIHYDROGEN HETNAM 2 DG8 PHOSPHATE) HETNAM DCP 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 2 DG8 C26 H23 N6 O7 P FORMUL 4 DCP C9 H16 N3 O13 P3 FORMUL 5 MG 3(MG 2+) FORMUL 8 HOH *28(H2 O) HELIX 1 1 CYS B 37 ASN B 47 1 11 HELIX 2 2 VAL B 81 CYS B 88 1 8 HELIX 3 3 LEU B 99 GLU B 115 1 17 HELIX 4 4 LEU B 132 GLN B 141 1 10 HELIX 5 5 ASP B 146 VAL B 151 5 6 HELIX 6 6 ASN B 159 GLN B 161 5 3 HELIX 7 7 ASP B 167 GLY B 192 1 26 HELIX 8 8 ASN B 202 SER B 210 1 9 HELIX 9 9 LEU B 222 GLU B 224 5 3 HELIX 10 10 SER B 225 SER B 232 1 8 HELIX 11 11 HIS B 235 ILE B 239 5 5 HELIX 12 12 GLY B 243 LEU B 253 1 11 HELIX 13 13 SER B 257 PHE B 264 1 8 HELIX 14 14 SER B 265 GLY B 274 1 10 HELIX 15 15 GLY B 274 LEU B 284 1 11 HELIX 16 16 SER B 285 GLY B 287 5 3 HELIX 17 17 SER B 313 GLN B 334 1 22 HELIX 18 18 VAL B 379 MET B 394 1 16 SHEET 1 A 6 VAL B 120 LEU B 123 0 SHEET 2 A 6 GLU B 127 ASP B 131 -1 O PHE B 129 N GLU B 121 SHEET 3 A 6 ILE B 30 LEU B 35 -1 N VAL B 33 O ASN B 128 SHEET 4 A 6 GLY B 195 ALA B 200 -1 O CYS B 196 N ASP B 34 SHEET 5 A 6 GLN B 218 VAL B 220 1 O THR B 219 N ALA B 197 SHEET 6 A 6 HIS B 156 VAL B 157 1 N HIS B 156 O GLN B 218 SHEET 1 B 4 MET B 79 ASN B 80 0 SHEET 2 B 4 LEU B 62 CYS B 66 -1 N VAL B 63 O MET B 79 SHEET 3 B 4 LEU B 55 GLN B 59 -1 N GLN B 59 O LEU B 62 SHEET 4 B 4 VAL B 92 ASN B 95 1 O VAL B 94 N GLN B 58 SHEET 1 C 4 PHE B 302 SER B 307 0 SHEET 2 C 4 LEU B 405 LEU B 413 -1 O LEU B 406 N ASP B 306 SHEET 3 C 4 PRO B 339 ARG B 347 -1 N ILE B 345 O SER B 407 SHEET 4 C 4 SER B 359 PRO B 363 -1 O ARG B 360 N LEU B 344 LINK OD1 ASP B 34 MG MG B 502 1555 1555 2.76 LINK OD1 ASP B 34 MG MG B 504 1555 1555 2.96 LINK O LEU B 35 MG MG B 502 1555 1555 2.92 LINK OE2 GLU B 127 MG MG B 504 1555 1555 2.63 LINK O LYS B 237 MG MG B 503 1555 1555 2.68 LINK O ILE B 239 MG MG B 503 1555 1555 2.89 LINK O ILE B 242 MG MG B 503 1555 1555 2.69 LINK O3G DCP B 501 MG MG B 502 1555 1555 2.52 LINK O2B DCP B 501 MG MG B 502 1555 1555 3.00 LINK O1A DCP B 501 MG MG B 504 1555 1555 2.78 LINK MG MG B 502 O HOH B 601 1555 1555 2.85 LINK MG MG B 503 O HOH B 624 1555 1555 2.01 LINK MG MG B 503 OP1 DC P 872 1555 1555 2.61 LINK MG MG B 503 O HOH P 901 1555 1555 2.78 CISPEP 1 LYS B 214 PRO B 215 0 -8.51 SITE 1 AC1 16 LEU B 35 CYS B 37 PHE B 38 TYR B 39 SITE 2 AC1 16 VAL B 64 THR B 65 TYR B 68 ARG B 71 SITE 3 AC1 16 LYS B 77 ASP B 126 LYS B 214 MG B 502 SITE 4 AC1 16 MG B 504 DC P 873 DG8 T 840 DG T 841 SITE 1 AC2 4 ASP B 34 LEU B 35 DCP B 501 HOH B 601 SITE 1 AC3 6 LYS B 237 ILE B 239 ILE B 242 HOH B 624 SITE 2 AC3 6 DC P 872 HOH P 901 SITE 1 AC4 4 ASP B 34 GLU B 127 DCP B 501 DC P 873 CRYST1 98.046 98.046 194.649 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010199 0.005889 0.000000 0.00000 SCALE2 0.000000 0.011777 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005137 0.00000