data_4F2X # _entry.id 4F2X # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4F2X pdb_00004f2x 10.2210/pdb4f2x/pdb NDB NA1780 ? ? RCSB RCSB072387 ? ? WWPDB D_1000072387 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4F2Y _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4F2X _pdbx_database_status.recvd_initial_deposition_date 2012-05-08 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Pallan, P.S.' 1 'Egli, M.' 2 # _citation.id primary _citation.title ;Synthesis and Antisense Properties of Fluoro Cyclohexenyl Nucleic Acid (F-CeNA), a Nuclease Stable Mimic of 2'-Fluoro RNA. ; _citation.journal_abbrev J.Org.Chem. _citation.journal_volume 77 _citation.page_first 5074 _citation.page_last 5085 _citation.year 2012 _citation.journal_id_ASTM JOCEAH _citation.country US _citation.journal_id_ISSN 0022-3263 _citation.journal_id_CSD 0035 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22591005 _citation.pdbx_database_id_DOI 10.1021/jo300594b # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Seth, P.P.' 1 ? primary 'Yu, J.' 2 ? primary 'Jazayeri, A.' 3 ? primary 'Pallan, P.S.' 4 ? primary 'Allerson, C.R.' 5 ? primary 'Ostergaard, M.E.' 6 ? primary 'Liu, F.' 7 ? primary 'Herdewijn, P.' 8 ? primary 'Egli, M.' 9 ? primary 'Swayze, E.E.' 10 ? # _cell.entry_id 4F2X _cell.length_a 26.700 _cell.length_b 33.862 _cell.length_c 80.165 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4F2X _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*GP*CP*GP*(XTF)P*GP*CP*G)-3'" 2182.451 2 ? ? ? ? 2 polymer syn "5'-D(*CP*GP*CP*AP*CP*GP*C)-3'" 2083.388 2 ? ? ? ? 3 non-polymer syn 'COBALT HEXAMMINE(III)' 161.116 2 ? ? ? ? 4 non-polymer syn 'COBALT (III) ION' 58.933 6 ? ? ? ? 5 water nat water 18.015 77 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes '(DG)(DC)(DG)(XTF)(DG)(DC)(DG)' GCGXGCG A,C ? 2 polydeoxyribonucleotide no no '(DC)(DG)(DC)(DA)(DC)(DG)(DC)' CGCACGC B,D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DC n 1 3 DG n 1 4 XTF n 1 5 DG n 1 6 DC n 1 7 DG n 2 1 DC n 2 2 DG n 2 3 DC n 2 4 DA n 2 5 DC n 2 6 DG n 2 7 DC n # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 PDB 4F2X 4F2X 1 1 'GCG(XTF)GCG' ? 2 PDB 4F2X 4F2X 2 1 CGCACGC ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4F2X A 1 ? 7 ? 4F2X 1 ? 7 ? 1 7 2 1 4F2X C 1 ? 7 ? 4F2X 1 ? 7 ? 1 7 3 2 4F2X B 1 ? 7 ? 4F2X 1 ? 7 ? 1 7 4 2 4F2X D 1 ? 7 ? 4F2X 1 ? 7 ? 1 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 3CO non-polymer . 'COBALT (III) ION' ? 'Co 3' 58.933 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 HOH non-polymer . WATER ? 'H2 O' 18.015 NCO non-polymer . 'COBALT HEXAMMINE(III)' ? 'Co H18 N6 3' 161.116 XTF 'DNA linking' n ;[(1R,4R,5S,6R)-5-fluoro-6-hydroxy-4-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)cyclohex-2-en-1-yl]methyl dihydrogen phosphate ; ? 'C12 H16 F N2 O7 P' 350.237 # _exptl.entry_id 4F2X _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.12 _exptl_crystal.density_percent_sol 42.08 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pdbx_details ;40 mM sodium cacodylate, 20 mM cobalt hexamine, 20 mM magnesium chloride, 10% v/v MPD, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2012-02-07 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'diamond(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9787 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 21-ID-F' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 21-ID-F _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9787 # _reflns.entry_id 4F2X _reflns.observed_criterion_sigma_I 5 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 40.08 _reflns.d_resolution_high 1.57 _reflns.number_obs 10592 _reflns.number_all 10628 _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs 0.063 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 38.6 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.57 _reflns_shell.d_res_low 1.63 _reflns_shell.percent_possible_all 99.3 _reflns_shell.Rmerge_I_obs 0.59 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.63 _reflns_shell.pdbx_redundancy 7.5 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4F2X _refine.ls_number_reflns_obs 10085 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 40.08 _refine.ls_d_res_high 1.57 _refine.ls_percent_reflns_obs 99.32 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all 0.188 _refine.ls_R_factor_R_work 0.185 _refine.ls_R_factor_R_free 0.251 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 507 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.960 _refine.correlation_coeff_Fo_to_Fc_free 0.933 _refine.B_iso_mean 25.805 _refine.aniso_B[1][1] 1.96 _refine.aniso_B[2][2] 0.22 _refine.aniso_B[3][3] -2.18 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT U VALUES : RESIDUAL ONLY ; _refine.pdbx_starting_model 'PDB ENTRY 3FL6' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.098 _refine.pdbx_overall_ESU_R_Free 0.104 _refine.overall_SU_ML 0.071 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 3.219 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 551 _refine_hist.pdbx_number_atoms_ligand 20 _refine_hist.number_atoms_solvent 77 _refine_hist.number_atoms_total 648 _refine_hist.d_res_high 1.57 _refine_hist.d_res_low 40.08 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.0082 0.012 ? 627 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.823 1.505 ? 973 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.115 0.200 ? 85 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.027 0.020 ? 293 ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.57 _refine_ls_shell.d_res_low 1.612 _refine_ls_shell.number_reflns_R_work 628 _refine_ls_shell.R_factor_R_work 0.246 _refine_ls_shell.percent_reflns_obs 97.65 _refine_ls_shell.R_factor_R_free 0.298 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 37 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 507 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4F2X _struct.title ;Structure of 3'-Fluoro Cyclohexenyl Nucleic Acid Heptamer ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4F2X _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'Fluoro Cyclohexenyl Nucleic Acid, F-CeNA, Modified DNA, B-form DNA, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 4 ? K N N 4 ? L N N 4 ? M N N 5 ? N N N 5 ? O N N 5 ? P N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DG 3 "O3'" ? ? ? 1_555 A XTF 4 P ? ? A DG 3 A XTF 4 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale2 covale both ? C DG 3 "O3'" ? ? ? 1_555 C XTF 4 P ? ? C DG 3 C XTF 4 1_555 ? ? ? ? ? ? ? 1.628 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 7 N3 ? ? A DG 1 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 7 O2 ? ? A DG 1 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 7 N4 ? ? A DG 1 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 6 N1 ? ? A DC 2 B DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 6 O6 ? ? A DC 2 B DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 6 N2 ? ? A DC 2 B DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 3 B DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 3 B DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 3 B DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 5 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 5 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 5 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 6 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 6 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 6 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? C DG 1 N1 ? ? ? 1_555 D DC 7 N3 ? ? C DG 1 D DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? C DG 1 N2 ? ? ? 1_555 D DC 7 O2 ? ? C DG 1 D DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? C DG 1 O6 ? ? ? 1_555 D DC 7 N4 ? ? C DG 1 D DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? C DC 2 N3 ? ? ? 1_555 D DG 6 N1 ? ? C DC 2 D DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? C DC 2 N4 ? ? ? 1_555 D DG 6 O6 ? ? C DC 2 D DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? C DC 2 O2 ? ? ? 1_555 D DG 6 N2 ? ? C DC 2 D DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? C DG 3 N1 ? ? ? 1_555 D DC 5 N3 ? ? C DG 3 D DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? C DG 3 N2 ? ? ? 1_555 D DC 5 O2 ? ? C DG 3 D DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? C DG 3 O6 ? ? ? 1_555 D DC 5 N4 ? ? C DG 3 D DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? C DG 5 N1 ? ? ? 1_555 D DC 3 N3 ? ? C DG 5 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C DG 5 N2 ? ? ? 1_555 D DC 3 O2 ? ? C DG 5 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C DG 5 O6 ? ? ? 1_555 D DC 3 N4 ? ? C DG 5 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C DC 6 N3 ? ? ? 1_555 D DG 2 N1 ? ? C DC 6 D DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C DC 6 N4 ? ? ? 1_555 D DG 2 O6 ? ? C DC 6 D DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C DC 6 O2 ? ? ? 1_555 D DG 2 N2 ? ? C DC 6 D DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A NCO 101 ? 8 'BINDING SITE FOR RESIDUE NCO A 101' AC2 Software B NCO 101 ? 8 'BINDING SITE FOR RESIDUE NCO B 101' AC3 Software B 3CO 102 ? 1 'BINDING SITE FOR RESIDUE 3CO B 102' AC4 Software B 3CO 103 ? 1 'BINDING SITE FOR RESIDUE 3CO B 103' AC5 Software B 3CO 104 ? 2 'BINDING SITE FOR RESIDUE 3CO B 104' AC6 Software B 3CO 105 ? 1 'BINDING SITE FOR RESIDUE 3CO B 105' AC7 Software C 3CO 101 ? 2 'BINDING SITE FOR RESIDUE 3CO C 101' AC8 Software C 3CO 102 ? 3 'BINDING SITE FOR RESIDUE 3CO C 102' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 DG A 1 ? DG A 1 . ? 1_555 ? 2 AC1 8 DC A 2 ? DC A 2 . ? 1_555 ? 3 AC1 8 DG B 6 ? DG B 6 . ? 1_555 ? 4 AC1 8 DC B 7 ? DC B 7 . ? 1_555 ? 5 AC1 8 HOH N . ? HOH B 205 . ? 1_555 ? 6 AC1 8 DG D 2 ? DG D 2 . ? 1_555 ? 7 AC1 8 DG D 2 ? DG D 2 . ? 4_445 ? 8 AC1 8 DC D 3 ? DC D 3 . ? 1_555 ? 9 AC2 8 DC B 1 ? DC B 1 . ? 3_554 ? 10 AC2 8 DC B 3 ? DC B 3 . ? 1_555 ? 11 AC2 8 DA B 4 ? DA B 4 . ? 1_555 ? 12 AC2 8 HOH N . ? HOH B 201 . ? 1_555 ? 13 AC2 8 HOH N . ? HOH B 220 . ? 1_555 ? 14 AC2 8 DG C 1 ? DG C 1 . ? 1_555 ? 15 AC2 8 DG D 6 ? DG D 6 . ? 1_555 ? 16 AC2 8 DC D 7 ? DC D 7 . ? 1_555 ? 17 AC3 1 3CO H . ? 3CO B 103 . ? 1_555 ? 18 AC4 1 3CO G . ? 3CO B 102 . ? 1_555 ? 19 AC5 2 DG A 7 ? DG A 7 . ? 1_655 ? 20 AC5 2 3CO J . ? 3CO B 105 . ? 1_555 ? 21 AC6 1 3CO I . ? 3CO B 104 . ? 1_555 ? 22 AC7 2 3CO L . ? 3CO C 102 . ? 1_555 ? 23 AC7 2 HOH O . ? HOH C 201 . ? 4_555 ? 24 AC8 3 DG C 7 ? DG C 7 . ? 4_555 ? 25 AC8 3 3CO K . ? 3CO C 101 . ? 1_555 ? 26 AC8 3 HOH O . ? HOH C 201 . ? 4_555 ? # _database_PDB_matrix.entry_id 4F2X _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4F2X _atom_sites.fract_transf_matrix[1][1] 0.037453 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.029532 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012474 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CO F N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG DG A . n A 1 2 DC 2 2 2 DC DC A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 XTF 4 4 4 XTF XTF A . n A 1 5 DG 5 5 5 DG DG A . n A 1 6 DC 6 6 6 DC DC A . n A 1 7 DG 7 7 7 DG DG A . n B 2 1 DC 1 1 1 DC DC B . n B 2 2 DG 2 2 2 DG DG B . n B 2 3 DC 3 3 3 DC DC B . n B 2 4 DA 4 4 4 DA DA B . n B 2 5 DC 5 5 5 DC DC B . n B 2 6 DG 6 6 6 DG DG B . n B 2 7 DC 7 7 7 DC DC B . n C 1 1 DG 1 1 1 DG DG C . n C 1 2 DC 2 2 2 DC DC C . n C 1 3 DG 3 3 3 DG DG C . n C 1 4 XTF 4 4 4 XTF XTF C . n C 1 5 DG 5 5 5 DG DG C . n C 1 6 DC 6 6 6 DC DC C . n C 1 7 DG 7 7 7 DG DG C . n D 2 1 DC 1 1 1 DC DC D . n D 2 2 DG 2 2 2 DG DG D . n D 2 3 DC 3 3 3 DC DC D . n D 2 4 DA 4 4 4 DA DA D . n D 2 5 DC 5 5 5 DC DC D . n D 2 6 DG 6 6 6 DG DG D . n D 2 7 DC 7 7 7 DC DC D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NCO 1 101 2 NCO NCO A . F 3 NCO 1 101 1 NCO NCO B . G 4 3CO 1 102 3 3CO CO B . H 4 3CO 1 103 4 3CO CO B . I 4 3CO 1 104 5 3CO CO B . J 4 3CO 1 105 6 3CO CO B . K 4 3CO 1 101 7 3CO CO C . L 4 3CO 1 102 8 3CO CO C . M 5 HOH 1 201 3 HOH HOH A . M 5 HOH 2 202 4 HOH HOH A . M 5 HOH 3 203 32 HOH HOH A . M 5 HOH 4 204 41 HOH HOH A . M 5 HOH 5 205 42 HOH HOH A . M 5 HOH 6 206 43 HOH HOH A . M 5 HOH 7 207 44 HOH HOH A . M 5 HOH 8 208 48 HOH HOH A . M 5 HOH 9 209 53 HOH HOH A . M 5 HOH 10 210 58 HOH HOH A . M 5 HOH 11 211 63 HOH HOH A . M 5 HOH 12 214 85 HOH HOH A . M 5 HOH 13 215 86 HOH HOH A . N 5 HOH 1 201 5 HOH HOH B . N 5 HOH 2 202 12 HOH HOH B . N 5 HOH 3 203 13 HOH HOH B . N 5 HOH 4 204 14 HOH HOH B . N 5 HOH 5 205 18 HOH HOH B . N 5 HOH 6 206 20 HOH HOH B . N 5 HOH 7 207 21 HOH HOH B . N 5 HOH 8 208 22 HOH HOH B . N 5 HOH 9 209 23 HOH HOH B . N 5 HOH 10 210 29 HOH HOH B . N 5 HOH 11 211 30 HOH HOH B . N 5 HOH 12 212 31 HOH HOH B . N 5 HOH 13 213 33 HOH HOH B . N 5 HOH 14 214 35 HOH HOH B . N 5 HOH 15 215 40 HOH HOH B . N 5 HOH 16 216 45 HOH HOH B . N 5 HOH 17 217 49 HOH HOH B . N 5 HOH 18 218 50 HOH HOH B . N 5 HOH 19 219 51 HOH HOH B . N 5 HOH 20 220 52 HOH HOH B . N 5 HOH 21 221 54 HOH HOH B . N 5 HOH 22 222 57 HOH HOH B . N 5 HOH 23 223 59 HOH HOH B . N 5 HOH 24 224 60 HOH HOH B . N 5 HOH 25 225 61 HOH HOH B . N 5 HOH 26 226 62 HOH HOH B . N 5 HOH 27 227 64 HOH HOH B . N 5 HOH 28 228 68 HOH HOH B . N 5 HOH 29 229 71 HOH HOH B . N 5 HOH 30 230 72 HOH HOH B . N 5 HOH 31 231 74 HOH HOH B . N 5 HOH 32 232 75 HOH HOH B . N 5 HOH 33 233 76 HOH HOH B . N 5 HOH 34 234 79 HOH HOH B . N 5 HOH 35 235 84 HOH HOH B . O 5 HOH 1 201 1 HOH HOH C . O 5 HOH 2 202 2 HOH HOH C . O 5 HOH 3 203 15 HOH HOH C . O 5 HOH 4 204 24 HOH HOH C . O 5 HOH 5 205 25 HOH HOH C . O 5 HOH 6 206 26 HOH HOH C . O 5 HOH 7 207 38 HOH HOH C . O 5 HOH 8 208 47 HOH HOH C . O 5 HOH 9 209 65 HOH HOH C . O 5 HOH 10 211 67 HOH HOH C . P 5 HOH 1 101 6 HOH HOH D . P 5 HOH 2 102 7 HOH HOH D . P 5 HOH 3 103 8 HOH HOH D . P 5 HOH 4 104 9 HOH HOH D . P 5 HOH 5 105 10 HOH HOH D . P 5 HOH 6 106 11 HOH HOH D . P 5 HOH 7 108 17 HOH HOH D . P 5 HOH 8 109 19 HOH HOH D . P 5 HOH 9 110 27 HOH HOH D . P 5 HOH 10 111 28 HOH HOH D . P 5 HOH 11 112 34 HOH HOH D . P 5 HOH 12 113 46 HOH HOH D . P 5 HOH 13 114 69 HOH HOH D . P 5 HOH 14 115 70 HOH HOH D . P 5 HOH 15 116 73 HOH HOH D . P 5 HOH 16 117 78 HOH HOH D . P 5 HOH 17 118 80 HOH HOH D . P 5 HOH 18 119 81 HOH HOH D . P 5 HOH 19 120 82 HOH HOH D . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A XTF 4 A XTF 4 ? DT ? 2 C XTF 4 C XTF 4 ? DT ? # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,F,G,H,I,J,M,N 2 1 C,D,K,L,O,P # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1030 ? 1 MORE -32 ? 1 'SSA (A^2)' 3290 ? 2 'ABSA (A^2)' 910 ? 2 MORE -15 ? 2 'SSA (A^2)' 2900 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-05-30 2 'Structure model' 1 1 2012-06-13 3 'Structure model' 1 2 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_conn 6 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -6.5016 -14.9637 -12.1855 0.0918 0.0980 0.0806 -0.0054 -0.0099 0.0041 1.2943 1.0614 3.0420 -0.6336 -0.3672 1.5336 0.1548 0.1675 -0.0846 -0.0233 -0.1117 0.0532 0.1373 -0.2849 -0.0431 'X-RAY DIFFRACTION' 2 ? refined 3.8081 -0.0155 -8.1768 0.1426 0.1568 0.1103 -0.0292 -0.0001 0.0113 1.5734 0.1474 4.6232 -0.3710 1.4024 -0.6214 -0.0773 0.0568 0.0344 0.0376 0.0568 0.0156 -0.3651 0.2198 0.0204 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 1 ? ? A 7 ? ? ? ? 'X-RAY DIFFRACTION' 2 1 B 1 ? ? B 7 ? ? ? ? 'X-RAY DIFFRACTION' 3 2 C 1 ? ? C 7 ? ? ? ? 'X-RAY DIFFRACTION' 4 2 D 1 ? ? D 7 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MD2 'data collection' 'diffractometer software from EMBL (with LS-CAT developed extensions)' ? 1 PHASER phasing . ? 2 REFMAC refinement 5.6.0117 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 220 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 221 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.96 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" A DG 7 ? ? P A DG 7 ? ? OP1 A DG 7 ? ? 100.15 105.70 -5.55 0.90 N 2 1 "O5'" B DA 4 ? ? "C5'" B DA 4 ? ? "C4'" B DA 4 ? ? 104.41 109.40 -4.99 0.80 N 3 1 "C3'" C DG 1 ? ? "O3'" C DG 1 ? ? P C DC 2 ? ? 127.16 119.70 7.46 1.20 Y 4 1 "C3'" D DG 6 ? ? "C2'" D DG 6 ? ? "C1'" D DG 6 ? ? 97.58 102.40 -4.82 0.80 N # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 D DC 1 ? "O5'" ? D DC 1 "O5'" 2 1 Y 1 D DC 1 ? "C5'" ? D DC 1 "C5'" 3 1 Y 1 D DC 1 ? "C4'" ? D DC 1 "C4'" 4 1 Y 1 D DC 1 ? "O4'" ? D DC 1 "O4'" 5 1 Y 1 D DC 1 ? "C3'" ? D DC 1 "C3'" 6 1 Y 1 D DC 1 ? "C2'" ? D DC 1 "C2'" 7 1 Y 1 D DC 1 ? "C1'" ? D DC 1 "C1'" 8 1 Y 1 D DC 1 ? N1 ? D DC 1 N1 9 1 Y 1 D DC 1 ? C2 ? D DC 1 C2 10 1 Y 1 D DC 1 ? O2 ? D DC 1 O2 11 1 Y 1 D DC 1 ? N3 ? D DC 1 N3 12 1 Y 1 D DC 1 ? C4 ? D DC 1 C4 13 1 Y 1 D DC 1 ? N4 ? D DC 1 N4 14 1 Y 1 D DC 1 ? C5 ? D DC 1 C5 15 1 Y 1 D DC 1 ? C6 ? D DC 1 C6 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 3CO CO CO N N 1 DA OP3 O N N 2 DA P P N N 3 DA OP1 O N N 4 DA OP2 O N N 5 DA "O5'" O N N 6 DA "C5'" C N N 7 DA "C4'" C N R 8 DA "O4'" O N N 9 DA "C3'" C N S 10 DA "O3'" O N N 11 DA "C2'" C N N 12 DA "C1'" C N R 13 DA N9 N Y N 14 DA C8 C Y N 15 DA N7 N Y N 16 DA C5 C Y N 17 DA C6 C Y N 18 DA N6 N N N 19 DA N1 N Y N 20 DA C2 C Y N 21 DA N3 N Y N 22 DA C4 C Y N 23 DA HOP3 H N N 24 DA HOP2 H N N 25 DA "H5'" H N N 26 DA "H5''" H N N 27 DA "H4'" H N N 28 DA "H3'" H N N 29 DA "HO3'" H N N 30 DA "H2'" H N N 31 DA "H2''" H N N 32 DA "H1'" H N N 33 DA H8 H N N 34 DA H61 H N N 35 DA H62 H N N 36 DA H2 H N N 37 DC OP3 O N N 38 DC P P N N 39 DC OP1 O N N 40 DC OP2 O N N 41 DC "O5'" O N N 42 DC "C5'" C N N 43 DC "C4'" C N R 44 DC "O4'" O N N 45 DC "C3'" C N S 46 DC "O3'" O N N 47 DC "C2'" C N N 48 DC "C1'" C N R 49 DC N1 N N N 50 DC C2 C N N 51 DC O2 O N N 52 DC N3 N N N 53 DC C4 C N N 54 DC N4 N N N 55 DC C5 C N N 56 DC C6 C N N 57 DC HOP3 H N N 58 DC HOP2 H N N 59 DC "H5'" H N N 60 DC "H5''" H N N 61 DC "H4'" H N N 62 DC "H3'" H N N 63 DC "HO3'" H N N 64 DC "H2'" H N N 65 DC "H2''" H N N 66 DC "H1'" H N N 67 DC H41 H N N 68 DC H42 H N N 69 DC H5 H N N 70 DC H6 H N N 71 DG OP3 O N N 72 DG P P N N 73 DG OP1 O N N 74 DG OP2 O N N 75 DG "O5'" O N N 76 DG "C5'" C N N 77 DG "C4'" C N R 78 DG "O4'" O N N 79 DG "C3'" C N S 80 DG "O3'" O N N 81 DG "C2'" C N N 82 DG "C1'" C N R 83 DG N9 N Y N 84 DG C8 C Y N 85 DG N7 N Y N 86 DG C5 C Y N 87 DG C6 C N N 88 DG O6 O N N 89 DG N1 N N N 90 DG C2 C N N 91 DG N2 N N N 92 DG N3 N N N 93 DG C4 C Y N 94 DG HOP3 H N N 95 DG HOP2 H N N 96 DG "H5'" H N N 97 DG "H5''" H N N 98 DG "H4'" H N N 99 DG "H3'" H N N 100 DG "HO3'" H N N 101 DG "H2'" H N N 102 DG "H2''" H N N 103 DG "H1'" H N N 104 DG H8 H N N 105 DG H1 H N N 106 DG H21 H N N 107 DG H22 H N N 108 HOH O O N N 109 HOH H1 H N N 110 HOH H2 H N N 111 NCO CO CO N N 112 NCO N1 N N N 113 NCO N2 N N N 114 NCO N3 N N N 115 NCO N4 N N N 116 NCO N5 N N N 117 NCO N6 N N N 118 NCO HN11 H N N 119 NCO HN12 H N N 120 NCO HN13 H N N 121 NCO HN21 H N N 122 NCO HN22 H N N 123 NCO HN23 H N N 124 NCO HN31 H N N 125 NCO HN32 H N N 126 NCO HN33 H N N 127 NCO HN41 H N N 128 NCO HN42 H N N 129 NCO HN43 H N N 130 NCO HN51 H N N 131 NCO HN52 H N N 132 NCO HN53 H N N 133 NCO HN61 H N N 134 NCO HN62 H N N 135 NCO HN63 H N N 136 XTF F F N N 137 XTF "C2'" C N S 138 XTF "C1'" C N R 139 XTF N1 N N N 140 XTF C6 C N N 141 XTF C5 C N N 142 XTF C5M C N N 143 XTF C2 C N N 144 XTF O2 O N N 145 XTF N3 N N N 146 XTF C4 C N N 147 XTF O4 O N N 148 XTF "C7'" C N N 149 XTF "C6'" C N N 150 XTF "C3'" C N R 151 XTF "O3'" O N N 152 XTF "C4'" C N R 153 XTF "C5'" C N N 154 XTF "O5'" O N N 155 XTF P P N N 156 XTF OP1 O N N 157 XTF OP2 O N N 158 XTF H1 H N N 159 XTF H2 H N N 160 XTF H3 H N N 161 XTF H4 H N N 162 XTF H5 H N N 163 XTF H6 H N N 164 XTF H7 H N N 165 XTF H8 H N N 166 XTF H9 H N N 167 XTF H10 H N N 168 XTF H11 H N N 169 XTF H12 H N N 170 XTF H13 H N N 171 XTF H14 H N N 172 XTF H16 H N N 173 XTF OP3 O N N 174 XTF H18 H N N 175 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 HOH O H1 sing N N 113 HOH O H2 sing N N 114 NCO CO N1 sing N N 115 NCO CO N2 sing N N 116 NCO CO N3 sing N N 117 NCO CO N4 sing N N 118 NCO CO N5 sing N N 119 NCO CO N6 sing N N 120 NCO N1 HN11 sing N N 121 NCO N1 HN12 sing N N 122 NCO N1 HN13 sing N N 123 NCO N2 HN21 sing N N 124 NCO N2 HN22 sing N N 125 NCO N2 HN23 sing N N 126 NCO N3 HN31 sing N N 127 NCO N3 HN32 sing N N 128 NCO N3 HN33 sing N N 129 NCO N4 HN41 sing N N 130 NCO N4 HN42 sing N N 131 NCO N4 HN43 sing N N 132 NCO N5 HN51 sing N N 133 NCO N5 HN52 sing N N 134 NCO N5 HN53 sing N N 135 NCO N6 HN61 sing N N 136 NCO N6 HN62 sing N N 137 NCO N6 HN63 sing N N 138 XTF F "C2'" sing N N 139 XTF "O3'" "C3'" sing N N 140 XTF "C2'" "C3'" sing N N 141 XTF "C2'" "C1'" sing N N 142 XTF "C3'" "C4'" sing N N 143 XTF "C1'" N1 sing N N 144 XTF "C1'" "C7'" sing N N 145 XTF "O5'" "C5'" sing N N 146 XTF "O5'" P sing N N 147 XTF OP2 P sing N N 148 XTF N1 C6 sing N N 149 XTF N1 C2 sing N N 150 XTF O2 C2 doub N N 151 XTF C6 C5 doub N N 152 XTF C2 N3 sing N N 153 XTF "C4'" "C5'" sing N N 154 XTF "C4'" "C6'" sing N N 155 XTF C5 C4 sing N N 156 XTF C5 C5M sing N N 157 XTF N3 C4 sing N N 158 XTF C4 O4 doub N N 159 XTF P OP1 doub N N 160 XTF "C7'" "C6'" doub N N 161 XTF "C2'" H1 sing N N 162 XTF "C1'" H2 sing N N 163 XTF C6 H3 sing N N 164 XTF C5M H4 sing N N 165 XTF C5M H5 sing N N 166 XTF C5M H6 sing N N 167 XTF N3 H7 sing N N 168 XTF "C7'" H8 sing N N 169 XTF "C6'" H9 sing N N 170 XTF "C3'" H10 sing N N 171 XTF "O3'" H11 sing N N 172 XTF "C4'" H12 sing N N 173 XTF "C5'" H13 sing N N 174 XTF "C5'" H14 sing N N 175 XTF OP2 H16 sing N N 176 XTF P OP3 sing N N 177 XTF OP3 H18 sing N N 178 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4F2X 'double helix' 4F2X 'b-form double helix' 4F2X 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 7 1_555 -0.411 -0.083 -0.104 -26.163 -9.781 -0.013 1 A_DG1:DC7_B A 1 ? B 7 ? 19 1 1 A DC 2 1_555 B DG 6 1_555 0.099 -0.126 0.325 -16.075 1.251 -1.624 2 A_DC2:DG6_B A 2 ? B 6 ? 19 1 1 A DG 3 1_555 B DC 5 1_555 -0.194 -0.125 0.009 0.525 -6.617 0.723 3 A_DG3:DC5_B A 3 ? B 5 ? 19 1 1 A DG 5 1_555 B DC 3 1_555 -0.297 -0.157 0.223 -0.059 -5.387 -0.644 4 A_DG5:DC3_B A 5 ? B 3 ? 19 1 1 A DC 6 1_555 B DG 2 1_555 0.359 -0.061 -0.025 5.900 1.378 0.568 5 A_DC6:DG2_B A 6 ? B 2 ? 19 1 1 C DG 1 1_555 D DC 7 1_555 -0.282 -0.110 0.095 -14.596 -11.246 -1.740 6 C_DG1:DC7_D C 1 ? D 7 ? 19 1 1 C DC 2 1_555 D DG 6 1_555 0.219 -0.137 0.291 -12.773 -0.908 -2.165 7 C_DC2:DG6_D C 2 ? D 6 ? 19 1 1 C DG 3 1_555 D DC 5 1_555 -0.187 -0.129 0.085 4.799 -9.353 -0.708 8 C_DG3:DC5_D C 3 ? D 5 ? 19 1 1 C DG 5 1_555 D DC 3 1_555 -0.173 -0.186 -0.262 -14.775 1.811 -1.692 9 C_DG5:DC3_D C 5 ? D 3 ? 19 1 1 C DC 6 1_555 D DG 2 1_555 0.256 -0.180 -0.229 8.745 19.124 -0.407 10 C_DC6:DG2_D C 6 ? D 2 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 7 1_555 A DC 2 1_555 B DG 6 1_555 0.746 0.789 3.148 -4.411 -2.995 37.246 1.591 -1.697 2.974 -4.660 6.864 37.612 1 AA_DG1DC2:DG6DC7_BB A 1 ? B 7 ? A 2 ? B 6 ? 1 A DC 2 1_555 B DG 6 1_555 A DG 3 1_555 B DC 5 1_555 -0.118 0.786 3.031 1.324 5.964 25.520 0.197 0.601 3.120 13.259 -2.943 26.229 2 AA_DC2DG3:DC5DG6_BB A 2 ? B 6 ? A 3 ? B 5 ? 1 A DG 3 1_555 B DC 5 1_555 A DG 5 1_555 B DC 3 1_555 -0.268 -0.515 6.581 -4.757 5.952 74.786 -0.787 -0.071 6.536 4.888 3.906 75.117 3 AA_DG3DG5:DC3DC5_BB A 3 ? B 5 ? A 5 ? B 3 ? 1 A DG 5 1_555 B DC 3 1_555 A DC 6 1_555 B DG 2 1_555 -0.062 -0.182 3.262 1.910 -1.357 27.912 -0.056 0.579 3.255 -2.808 -3.951 28.008 4 AA_DG5DC6:DG2DC3_BB A 5 ? B 3 ? A 6 ? B 2 ? 1 C DG 1 1_555 D DC 7 1_555 C DC 2 1_555 D DG 6 1_555 0.661 0.940 3.444 -1.833 -9.542 39.572 2.426 -1.157 3.113 -13.841 2.659 40.701 5 CC_DG1DC2:DG6DC7_DD C 1 ? D 7 ? C 2 ? D 6 ? 1 C DC 2 1_555 D DG 6 1_555 C DG 3 1_555 D DC 5 1_555 0.111 0.936 3.026 0.710 5.238 26.174 0.726 -0.065 3.151 11.419 -1.547 26.694 6 CC_DC2DG3:DC5DG6_DD C 2 ? D 6 ? C 3 ? D 5 ? 1 C DG 3 1_555 D DC 5 1_555 C DG 5 1_555 D DC 3 1_555 0.471 -0.380 7.134 1.323 1.183 73.690 -0.399 -0.301 7.135 0.986 -1.103 73.708 7 CC_DG3DG5:DC3DC5_DD C 3 ? D 5 ? C 5 ? D 3 ? 1 C DG 5 1_555 D DC 3 1_555 C DC 6 1_555 D DG 2 1_555 -0.056 -0.231 2.883 2.165 12.469 18.742 -4.518 0.825 2.265 33.751 -5.859 22.583 8 CC_DG5DC6:DG2DC3_DD C 5 ? D 3 ? C 6 ? D 2 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'COBALT HEXAMMINE(III)' NCO 4 'COBALT (III) ION' 3CO 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3FL6 _pdbx_initial_refinement_model.details 'PDB ENTRY 3FL6' #