HEADER SIGNALING PROTEIN 10-MAY-12 4F48 TITLE THE X-RAY STRUCTURAL OF FIMXEAL-C-DI-GMP-PILZ COMPLEXES FROM TITLE 2 XANTHOMONAS CAMPESTRIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 437-684; COMPND 5 SYNONYM: FIMXEAL; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: TYPE IV FIMBRIAE ASSEMBLY PROTEIN; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XANTHOMONAS CAMPESTRIS PV. CAMPESTRIS; SOURCE 3 ORGANISM_TAXID: 340; SOURCE 4 GENE: XCC2291; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: XANTHOMONAS CAMPESTRIS PV. CAMPESTRIS; SOURCE 10 ORGANISM_TAXID: 340; SOURCE 11 GENE: PILZ, XCC1024; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS FIMXEAL-C-DI-GMP-PILZ COMPLEX, TYPE IV PILUS, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.-H.CHIN,Y.-T.LIAO,S.-H.CHOU REVDAT 3 20-MAR-24 4F48 1 REMARK HETSYN REVDAT 2 25-DEC-19 4F48 1 JRNL SEQADV REVDAT 1 14-NOV-12 4F48 0 JRNL AUTH K.-H.CHIN,W.-T.KUO,Y.-J.YU,Y.-T.LIAO,M.T.YANG,S.-H.CHOU JRNL TITL STRUCTURAL POLYMORPHISM OF C-DI-GMP BOUND TO AN EAL DOMAIN JRNL TITL 2 AND IN COMPLEX WITH A TYPE II PILZ-DOMAIN PROTEIN. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 68 1380 2012 JRNL REFN ESSN 1399-0047 JRNL PMID 22993092 JRNL DOI 10.1107/S0907444912030594 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 69323.400 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 22210 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.249 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1070 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.010 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3463 REMARK 3 BIN R VALUE (WORKING SET) : 0.3840 REMARK 3 BIN FREE R VALUE : 0.4580 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 210 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.032 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2625 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 80 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.53000 REMARK 3 B22 (A**2) : 1.53000 REMARK 3 B33 (A**2) : -3.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.42 REMARK 3 ESD FROM SIGMAA (A) : 0.61 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.53 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.85 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.032 REMARK 3 BOND ANGLES (DEGREES) : 4.900 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 2.770 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.260 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.210 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.190 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.000 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 22.96 REMARK 3 REMARK 3 NCS MODEL : NONE REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : C2E_PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : C2E.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. BULK SOLVENT MODEL USED REMARK 3 2. FRIEDEL PAIRS WERE CONSIDERED SEPARATELY AS UNIQUE REFLECTIONS REMARK 3 IN THE CALCULATION OF THE STATISTICS. REMARK 4 REMARK 4 4F48 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000072434. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 6 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27412 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH 7.5, 20% PEG 3000, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K, PH 8.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 32.40400 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 32.40400 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 32.40400 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 32.40400 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 32.40400 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 32.40400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 64.80800 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 606 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 GLU A 1 REMARK 465 GLU A 2 REMARK 465 GLU A 3 REMARK 465 ARG A 4 REMARK 465 ILE A 5 REMARK 465 GLU A 6 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ALA B 3 REMARK 465 MET B 4 REMARK 465 ASN B 5 REMARK 465 ALA B 6 REMARK 465 ARG B 7 REMARK 465 GLN B 76 REMARK 465 GLY B 77 REMARK 465 LEU B 107 REMARK 465 THR B 108 REMARK 465 THR B 109 REMARK 465 SER B 110 REMARK 465 ASP B 111 REMARK 465 LYS B 112 REMARK 465 PRO B 113 REMARK 465 THR B 114 REMARK 465 HIS B 115 REMARK 465 THR B 116 REMARK 465 MET B 117 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 654 O HOH A 654 11556 1.85 REMARK 500 O HOH A 651 O HOH A 651 7556 1.98 REMARK 500 O ARG A 87 CE MET B 43 7556 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR B 25 C MET B 26 N 0.173 REMARK 500 MET B 43 N MET B 43 CA 0.226 REMARK 500 MET B 43 C LEU B 44 N 0.145 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 71 CA - CB - CG ANGL. DEV. = 22.2 DEGREES REMARK 500 MET B 26 CB - CA - C ANGL. DEV. = 17.3 DEGREES REMARK 500 MET B 26 CA - CB - CG ANGL. DEV. = 19.6 DEGREES REMARK 500 MET B 26 O - C - N ANGL. DEV. = 16.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 16 62.67 -59.31 REMARK 500 LEU A 31 -96.31 -161.71 REMARK 500 LEU A 36 139.10 179.69 REMARK 500 ASN A 48 48.69 31.04 REMARK 500 LYS A 91 67.49 63.46 REMARK 500 ILE A 189 -38.57 -24.94 REMARK 500 LEU A 246 -137.06 -3.94 REMARK 500 LYS B 30 -87.60 -68.40 REMARK 500 ASP B 56 -90.44 -65.32 REMARK 500 ARG B 79 137.57 162.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C2E A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4F3H RELATED DB: PDB DBREF 4F48 A 0 247 UNP Q8P8F1 Q8P8F1_XANCP 437 684 DBREF 4F48 B 1 117 UNP Q8PBU4 Q8PBU4_XANCP 1 117 SEQADV 4F48 SER A -2 UNP Q8P8F1 EXPRESSION TAG SEQADV 4F48 ASN A -1 UNP Q8P8F1 EXPRESSION TAG SEQRES 1 A 250 SER ASN ALA GLU GLU GLU ARG ILE GLU ARG TRP VAL GLU SEQRES 2 A 250 GLN LEU ARG GLU ALA LEU ILE GLY ASP GLY PHE LEU LEU SEQRES 3 A 250 HIS TYR GLN PRO VAL LEU ASN LEU GLN GLY GLU PRO LEU SEQRES 4 A 250 GLU LEU TYR GLN ALA PHE LEU ARG LEU GLU ARG ASN GLY SEQRES 5 A 250 GLU MET MET SER PRO ASN ALA PHE MET ALA ILE ALA GLU SEQRES 6 A 250 GLU HIS ASP LEU ILE THR GLU ILE ASP ARG TRP VAL VAL SEQRES 7 A 250 ALA ARG ALA ILE ARG GLN LEU GLY GLU ARG GLN ARG ALA SEQRES 8 A 250 GLY HIS LYS THR HIS LEU LEU VAL ARG ILE GLY PRO ASN SEQRES 9 A 250 SER PHE SER ASP PRO GLN MET ILE ASP THR ILE ARG GLU SEQRES 10 A 250 GLN LEU ALA VAL TYR GLY VAL PRO GLY GLU ARG LEU TRP SEQRES 11 A 250 LEU GLN THR PRO GLU SER LYS VAL PHE THR HIS LEU ARG SEQRES 12 A 250 ASN ALA GLN GLN PHE LEU ALA SER VAL SER ALA MET GLY SEQRES 13 A 250 CYS LYS VAL GLY LEU GLU GLN PHE GLY SER GLY LEU ASP SEQRES 14 A 250 SER PHE GLN LEU LEU ALA HIS PHE GLN PRO ALA PHE LEU SEQRES 15 A 250 LYS LEU ASP ARG SER ILE THR GLY ASP ILE ALA SER ALA SEQRES 16 A 250 ARG GLU SER GLN GLU LYS ILE ARG GLU ILE THR SER ARG SEQRES 17 A 250 ALA GLN PRO THR GLY ILE LEU THR VAL ALA GLU PHE VAL SEQRES 18 A 250 ALA ASP ALA GLN SER MET SER SER PHE PHE THR ALA GLY SEQRES 19 A 250 VAL ASP TYR VAL GLN GLY ASP PHE VAL ALA PRO THR GLY SEQRES 20 A 250 PRO LEU MET SEQRES 1 B 117 MET SER ALA MET ASN ALA ARG GLN GLY ILE LEU SER LEU SEQRES 2 B 117 ALA LEU LYS ASP LYS ALA ALA LEU TYR SER ALA TYR MET SEQRES 3 B 117 PRO PHE VAL LYS SER GLY GLY ILE PHE VAL PRO THR PRO SEQRES 4 B 117 LYS ARG TYR MET LEU GLY ASP GLU VAL PHE LEU LEU LEU SEQRES 5 B 117 THR LEU PRO ASP SER SER GLU ARG LEU PRO VAL ALA GLY SEQRES 6 B 117 LYS VAL VAL TRP THR THR PRO ALA GLY ALA GLN GLY ASN SEQRES 7 B 117 ARG ALA ALA GLY ILE GLY VAL GLN PHE PRO ASP GLY PRO SEQRES 8 B 117 GLU GLY GLU ALA VAL ARG ASN LYS ILE GLU THR LEU LEU SEQRES 9 B 117 ALA GLY LEU THR THR SER ASP LYS PRO THR HIS THR MET HET C2E A 501 46 HETNAM C2E 9,9'-[(2R,3R,3AS,5S,7AR,9R,10R,10AS,12S,14AR)-3,5,10, HETNAM 2 C2E 12-TETRAHYDROXY-5,12-DIOXIDOOCTAHYDRO-2H,7H-DIFURO[3, HETNAM 3 C2E 2-D:3',2'-J][1,3,7,9,2, HETNAM 4 C2E 8]TETRAOXADIPHOSPHACYCLODODECINE-2,9-DIYL]BIS(2-AMINO- HETNAM 5 C2E 1,9-DIHYDRO-6H-PURIN-6-ONE) HETSYN C2E C-DI-GMP; CYCLIC DIGUANOSINE MONOPHOSPHATE FORMUL 3 C2E C20 H24 N10 O14 P2 FORMUL 4 HOH *80(H2 O) HELIX 1 1 ARG A 7 LEU A 16 1 10 HELIX 2 2 PRO A 54 ALA A 56 5 3 HELIX 3 3 PHE A 57 ASP A 65 1 9 HELIX 4 4 LEU A 66 ALA A 88 1 23 HELIX 5 5 PRO A 100 ASP A 105 1 6 HELIX 6 6 ASP A 105 TYR A 119 1 15 HELIX 7 7 PRO A 122 GLU A 124 5 3 HELIX 8 8 GLU A 132 HIS A 138 1 7 HELIX 9 9 HIS A 138 ALA A 151 1 14 HELIX 10 10 ASP A 166 GLN A 175 1 10 HELIX 11 11 ASP A 182 GLY A 187 1 6 HELIX 12 12 ALA A 192 GLN A 207 1 16 HELIX 13 13 ASP A 220 GLY A 231 1 12 HELIX 14 14 ASP B 17 ALA B 24 1 8 HELIX 15 15 GLY B 90 ALA B 105 1 16 SHEET 1 A 8 ILE B 10 ALA B 14 0 SHEET 2 A 8 GLU B 47 THR B 53 1 O LEU B 51 N LEU B 11 SHEET 3 A 8 LEU B 61 THR B 70 -1 O LEU B 61 N LEU B 52 SHEET 4 A 8 GLU A 50 MET A 52 -1 N MET A 51 O THR B 70 SHEET 5 A 8 LEU A 38 ARG A 47 -1 N ARG A 47 O GLU A 50 SHEET 6 A 8 GLY B 82 GLN B 86 0 SHEET 7 A 8 GLY B 33 PRO B 37 -1 N VAL B 36 O ILE B 83 SHEET 8 A 8 TYR B 25 MET B 26 -1 N MET B 26 O GLY B 33 SHEET 1 B14 ILE B 10 ALA B 14 0 SHEET 2 B14 GLU B 47 THR B 53 1 O LEU B 51 N LEU B 11 SHEET 3 B14 LEU B 61 THR B 70 -1 O LEU B 61 N LEU B 52 SHEET 4 B14 HIS A 93 ARG A 97 0 SHEET 5 B14 LEU A 126 PRO A 131 1 O TRP A 127 N LEU A 94 SHEET 6 B14 LYS A 155 PHE A 161 1 O LYS A 155 N LEU A 128 SHEET 7 B14 PHE A 178 LEU A 181 1 O LYS A 180 N LEU A 158 SHEET 8 B14 LEU A 212 ALA A 215 1 O VAL A 214 N LEU A 181 SHEET 9 B14 TYR A 234 VAL A 235 1 O TYR A 234 N THR A 213 SHEET 10 B14 PHE A 21 ASN A 30 -1 N LEU A 29 O VAL A 235 SHEET 11 B14 LEU A 38 ARG A 47 -1 O LEU A 38 N VAL A 28 SHEET 12 B14 GLY B 82 GLN B 86 0 SHEET 13 B14 GLY B 33 PRO B 37 -1 N VAL B 36 O ILE B 83 SHEET 14 B14 TYR B 25 MET B 26 -1 N MET B 26 O GLY B 33 SITE 1 AC1 18 PHE A 42 LEU A 43 ARG A 44 SER A 53 SITE 2 AC1 18 PRO A 54 ASN A 55 ASP A 71 ARG A 97 SITE 3 AC1 18 GLY A 99 PHE A 217 ASP A 238 HOH A 609 SITE 4 AC1 18 HOH A 618 LYS B 30 GLY B 45 ASP B 46 SITE 5 AC1 18 GLU B 47 LYS B 66 CRYST1 158.222 158.222 64.808 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006320 0.003649 0.000000 0.00000 SCALE2 0.000000 0.007298 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015430 0.00000