HEADER TRANSFERASE 17-MAY-12 4F8E TITLE CRYSTAL STRUCTURE OF HUMAN PRS1 D52H MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PPRIBP, PHOSPHORIBOSYL PYROPHOSPHATE SYNTHASE I, PRS-I; COMPND 5 EC: 2.7.6.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PRPS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS PRPP SYNTHESIS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.CHEN,M.TENG,X.LI REVDAT 3 20-MAR-24 4F8E 1 REMARK SEQADV REVDAT 2 12-MAR-14 4F8E 1 JRNL REVDAT 1 22-MAY-13 4F8E 0 JRNL AUTH P.CHEN,J.LI,J.MA,M.TENG,X.LI JRNL TITL A SMALL DISTURBANCE, BUT A SERIOUS DISEASE: THE POSSIBLE JRNL TITL 2 MECHANISM OF D52H-MUTANT OF HUMAN PRS1 THAT CAUSES GOUT JRNL REF IUBMB LIFE V. 65 518 2013 JRNL REFN ISSN 1521-6543 JRNL PMID 23509005 JRNL DOI 10.1002/IUB.1154 REMARK 2 REMARK 2 RESOLUTION. 2.27 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.27 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 30931 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4608 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 73 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 6 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 316 REMARK 3 RESIDUE RANGE : B 3 B 317 REMARK 3 RESIDUE RANGE : A 401 A 404 REMARK 3 RESIDUE RANGE : B 1001 B 1004 REMARK 3 RESIDUE RANGE : A 501 A 529 REMARK 3 RESIDUE RANGE : B 1101 B 1144 REMARK 3 ORIGIN FOR THE GROUP (A): 25.539 4.327 0.184 REMARK 3 T TENSOR REMARK 3 T11: 0.1386 T22: 0.1155 REMARK 3 T33: 0.0453 T12: -0.0016 REMARK 3 T13: 0.0050 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 0.3440 L22: 0.2537 REMARK 3 L33: 0.0275 L12: -0.1699 REMARK 3 L13: -0.0068 L23: -0.0641 REMARK 3 S TENSOR REMARK 3 S11: 0.0174 S12: -0.0057 S13: 0.0624 REMARK 3 S21: -0.0211 S22: -0.0244 S23: -0.0374 REMARK 3 S31: 0.0058 S32: 0.0085 S33: 0.0070 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4F8E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1000072584. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-325 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30931 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.270 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.27 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 4.1, VAPOR DIFFUSION, TEMPERATURE REMARK 280 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 85.15500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 49.16426 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 20.58333 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 85.15500 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 49.16426 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 20.58333 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 85.15500 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 49.16426 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 20.58333 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 98.32852 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 41.16667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 98.32852 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 41.16667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 98.32852 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 41.16667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 28330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 58730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -495.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 197 REMARK 465 LYS A 198 REMARK 465 ALA A 199 REMARK 465 ASN A 200 REMARK 465 GLU A 201 REMARK 465 VAL A 202 REMARK 465 ASP A 203 REMARK 465 PRO A 317 REMARK 465 LEU A 318 REMARK 465 LEU A 319 REMARK 465 GLU A 320 REMARK 465 HIS A 321 REMARK 465 HIS A 322 REMARK 465 HIS A 323 REMARK 465 HIS A 324 REMARK 465 HIS A 325 REMARK 465 HIS A 326 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 ARG B 196 REMARK 465 LYS B 197 REMARK 465 LYS B 198 REMARK 465 ALA B 199 REMARK 465 ASN B 200 REMARK 465 GLU B 201 REMARK 465 VAL B 202 REMARK 465 LEU B 318 REMARK 465 LEU B 319 REMARK 465 GLU B 320 REMARK 465 HIS B 321 REMARK 465 HIS B 322 REMARK 465 HIS B 323 REMARK 465 HIS B 324 REMARK 465 HIS B 325 REMARK 465 HIS B 326 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 3 CG OD1 ND2 REMARK 470 LYS A 5 CD CE NZ REMARK 470 VAL A 31 CG1 CG2 REMARK 470 LYS A 33 CD CE NZ REMARK 470 LYS A 34 CG CD CE NZ REMARK 470 ASN A 37 CG OD1 ND2 REMARK 470 CYS A 41 SG REMARK 470 LYS A 102 CG CD CE NZ REMARK 470 LYS A 153 CE NZ REMARK 470 ILE A 159 CD1 REMARK 470 GLU A 161 CD OE1 OE2 REMARK 470 LYS A 176 CD CE NZ REMARK 470 LYS A 194 CG CD CE NZ REMARK 470 ARG A 196 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 204 CG CD NE CZ NH1 NH2 REMARK 470 MET A 205 CE REMARK 470 LYS A 212 CG CD CE NZ REMARK 470 ILE A 229 CD1 REMARK 470 ILE A 258 CG1 CG2 CD1 REMARK 470 ILE A 261 CD1 REMARK 470 ASN A 263 CG OD1 ND2 REMARK 470 LYS A 282 CG CD CE NZ REMARK 470 LYS A 286 NZ REMARK 470 MET A 294 SD CE REMARK 470 HIS A 315 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 5 NZ REMARK 470 LYS B 29 CG CD CE NZ REMARK 470 LYS B 33 CG CD CE NZ REMARK 470 LYS B 34 CE NZ REMARK 470 GLU B 43 CG CD OE1 OE2 REMARK 470 LYS B 99 CE NZ REMARK 470 LYS B 102 CD CE NZ REMARK 470 LYS B 176 CG CD CE NZ REMARK 470 ARG B 184 NE CZ NH1 NH2 REMARK 470 LYS B 194 CE NZ REMARK 470 LYS B 212 CE NZ REMARK 470 ASP B 279 CG OD1 OD2 REMARK 470 LYS B 282 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 14 CB - CA - C ANGL. DEV. = -14.0 DEGREES REMARK 500 ASP B 14 N - CA - C ANGL. DEV. = 16.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 10 -148.25 58.33 REMARK 500 PHE A 35 -73.44 -76.35 REMARK 500 SER A 36 -70.96 -148.31 REMARK 500 SER A 58 -173.81 -69.25 REMARK 500 CYS A 60 20.31 -71.96 REMARK 500 ILE A 107 78.57 -103.27 REMARK 500 HIS A 123 144.75 -172.79 REMARK 500 ASN A 158 -17.83 -145.54 REMARK 500 GLU A 161 32.84 -84.63 REMARK 500 VAL A 187 -169.72 -127.23 REMARK 500 ASP A 224 -64.62 -97.96 REMARK 500 ALA A 257 -133.95 39.82 REMARK 500 ASN A 273 34.79 -99.17 REMARK 500 SER B 10 -150.25 -161.89 REMARK 500 ASP B 14 -35.45 -32.79 REMARK 500 ASN B 37 9.69 -62.44 REMARK 500 GLN B 97 70.12 -107.37 REMARK 500 ASP B 128 70.62 42.15 REMARK 500 VAL B 187 -167.01 -129.55 REMARK 500 ASP B 224 -73.01 -105.78 REMARK 500 CYS B 265 41.40 -90.82 REMARK 500 ASN B 273 32.95 -97.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1004 DBREF 4F8E A 1 318 UNP P60891 PRPS1_HUMAN 1 318 DBREF 4F8E B 1 318 UNP P60891 PRPS1_HUMAN 1 318 SEQADV 4F8E HIS A 52 UNP P60891 ASP 52 ENGINEERED MUTATION SEQADV 4F8E LEU A 319 UNP P60891 EXPRESSION TAG SEQADV 4F8E GLU A 320 UNP P60891 EXPRESSION TAG SEQADV 4F8E HIS A 321 UNP P60891 EXPRESSION TAG SEQADV 4F8E HIS A 322 UNP P60891 EXPRESSION TAG SEQADV 4F8E HIS A 323 UNP P60891 EXPRESSION TAG SEQADV 4F8E HIS A 324 UNP P60891 EXPRESSION TAG SEQADV 4F8E HIS A 325 UNP P60891 EXPRESSION TAG SEQADV 4F8E HIS A 326 UNP P60891 EXPRESSION TAG SEQADV 4F8E HIS B 52 UNP P60891 ASP 52 ENGINEERED MUTATION SEQADV 4F8E LEU B 319 UNP P60891 EXPRESSION TAG SEQADV 4F8E GLU B 320 UNP P60891 EXPRESSION TAG SEQADV 4F8E HIS B 321 UNP P60891 EXPRESSION TAG SEQADV 4F8E HIS B 322 UNP P60891 EXPRESSION TAG SEQADV 4F8E HIS B 323 UNP P60891 EXPRESSION TAG SEQADV 4F8E HIS B 324 UNP P60891 EXPRESSION TAG SEQADV 4F8E HIS B 325 UNP P60891 EXPRESSION TAG SEQADV 4F8E HIS B 326 UNP P60891 EXPRESSION TAG SEQRES 1 A 326 MET PRO ASN ILE LYS ILE PHE SER GLY SER SER HIS GLN SEQRES 2 A 326 ASP LEU SER GLN LYS ILE ALA ASP ARG LEU GLY LEU GLU SEQRES 3 A 326 LEU GLY LYS VAL VAL THR LYS LYS PHE SER ASN GLN GLU SEQRES 4 A 326 THR CYS VAL GLU ILE GLY GLU SER VAL ARG GLY GLU HIS SEQRES 5 A 326 VAL TYR ILE VAL GLN SER GLY CYS GLY GLU ILE ASN ASP SEQRES 6 A 326 ASN LEU MET GLU LEU LEU ILE MET ILE ASN ALA CYS LYS SEQRES 7 A 326 ILE ALA SER ALA SER ARG VAL THR ALA VAL ILE PRO CYS SEQRES 8 A 326 PHE PRO TYR ALA ARG GLN ASP LYS LYS ASP LYS SER ARG SEQRES 9 A 326 ALA PRO ILE SER ALA LYS LEU VAL ALA ASN MET LEU SER SEQRES 10 A 326 VAL ALA GLY ALA ASP HIS ILE ILE THR MET ASP LEU HIS SEQRES 11 A 326 ALA SER GLN ILE GLN GLY PHE PHE ASP ILE PRO VAL ASP SEQRES 12 A 326 ASN LEU TYR ALA GLU PRO ALA VAL LEU LYS TRP ILE ARG SEQRES 13 A 326 GLU ASN ILE SER GLU TRP ARG ASN CYS THR ILE VAL SER SEQRES 14 A 326 PRO ASP ALA GLY GLY ALA LYS ARG VAL THR SER ILE ALA SEQRES 15 A 326 ASP ARG LEU ASN VAL ASP PHE ALA LEU ILE HIS LYS GLU SEQRES 16 A 326 ARG LYS LYS ALA ASN GLU VAL ASP ARG MET VAL LEU VAL SEQRES 17 A 326 GLY ASP VAL LYS ASP ARG VAL ALA ILE LEU VAL ASP ASP SEQRES 18 A 326 MET ALA ASP THR CYS GLY THR ILE CYS HIS ALA ALA ASP SEQRES 19 A 326 LYS LEU LEU SER ALA GLY ALA THR ARG VAL TYR ALA ILE SEQRES 20 A 326 LEU THR HIS GLY ILE PHE SER GLY PRO ALA ILE SER ARG SEQRES 21 A 326 ILE ASN ASN ALA CYS PHE GLU ALA VAL VAL VAL THR ASN SEQRES 22 A 326 THR ILE PRO GLN GLU ASP LYS MET LYS HIS CYS SER LYS SEQRES 23 A 326 ILE GLN VAL ILE ASP ILE SER MET ILE LEU ALA GLU ALA SEQRES 24 A 326 ILE ARG ARG THR HIS ASN GLY GLU SER VAL SER TYR LEU SEQRES 25 A 326 PHE SER HIS VAL PRO LEU LEU GLU HIS HIS HIS HIS HIS SEQRES 26 A 326 HIS SEQRES 1 B 326 MET PRO ASN ILE LYS ILE PHE SER GLY SER SER HIS GLN SEQRES 2 B 326 ASP LEU SER GLN LYS ILE ALA ASP ARG LEU GLY LEU GLU SEQRES 3 B 326 LEU GLY LYS VAL VAL THR LYS LYS PHE SER ASN GLN GLU SEQRES 4 B 326 THR CYS VAL GLU ILE GLY GLU SER VAL ARG GLY GLU HIS SEQRES 5 B 326 VAL TYR ILE VAL GLN SER GLY CYS GLY GLU ILE ASN ASP SEQRES 6 B 326 ASN LEU MET GLU LEU LEU ILE MET ILE ASN ALA CYS LYS SEQRES 7 B 326 ILE ALA SER ALA SER ARG VAL THR ALA VAL ILE PRO CYS SEQRES 8 B 326 PHE PRO TYR ALA ARG GLN ASP LYS LYS ASP LYS SER ARG SEQRES 9 B 326 ALA PRO ILE SER ALA LYS LEU VAL ALA ASN MET LEU SER SEQRES 10 B 326 VAL ALA GLY ALA ASP HIS ILE ILE THR MET ASP LEU HIS SEQRES 11 B 326 ALA SER GLN ILE GLN GLY PHE PHE ASP ILE PRO VAL ASP SEQRES 12 B 326 ASN LEU TYR ALA GLU PRO ALA VAL LEU LYS TRP ILE ARG SEQRES 13 B 326 GLU ASN ILE SER GLU TRP ARG ASN CYS THR ILE VAL SER SEQRES 14 B 326 PRO ASP ALA GLY GLY ALA LYS ARG VAL THR SER ILE ALA SEQRES 15 B 326 ASP ARG LEU ASN VAL ASP PHE ALA LEU ILE HIS LYS GLU SEQRES 16 B 326 ARG LYS LYS ALA ASN GLU VAL ASP ARG MET VAL LEU VAL SEQRES 17 B 326 GLY ASP VAL LYS ASP ARG VAL ALA ILE LEU VAL ASP ASP SEQRES 18 B 326 MET ALA ASP THR CYS GLY THR ILE CYS HIS ALA ALA ASP SEQRES 19 B 326 LYS LEU LEU SER ALA GLY ALA THR ARG VAL TYR ALA ILE SEQRES 20 B 326 LEU THR HIS GLY ILE PHE SER GLY PRO ALA ILE SER ARG SEQRES 21 B 326 ILE ASN ASN ALA CYS PHE GLU ALA VAL VAL VAL THR ASN SEQRES 22 B 326 THR ILE PRO GLN GLU ASP LYS MET LYS HIS CYS SER LYS SEQRES 23 B 326 ILE GLN VAL ILE ASP ILE SER MET ILE LEU ALA GLU ALA SEQRES 24 B 326 ILE ARG ARG THR HIS ASN GLY GLU SER VAL SER TYR LEU SEQRES 25 B 326 PHE SER HIS VAL PRO LEU LEU GLU HIS HIS HIS HIS HIS SEQRES 26 B 326 HIS HET SO4 A 401 5 HET SO4 A 402 5 HET SO4 A 403 5 HET MG A 404 1 HET SO4 B1001 5 HET SO4 B1002 5 HET SO4 B1003 5 HET MG B1004 1 HETNAM SO4 SULFATE ION HETNAM MG MAGNESIUM ION FORMUL 3 SO4 6(O4 S 2-) FORMUL 6 MG 2(MG 2+) FORMUL 11 HOH *73(H2 O) HELIX 1 1 GLN A 13 GLY A 24 1 12 HELIX 2 2 GLU A 62 ILE A 79 1 18 HELIX 3 3 ILE A 107 GLY A 120 1 14 HELIX 4 4 ALA A 131 PHE A 138 5 8 HELIX 5 5 ALA A 147 GLU A 157 1 11 HELIX 6 6 ILE A 159 ASN A 164 5 6 HELIX 7 7 ASP A 171 GLY A 173 5 3 HELIX 8 8 GLY A 174 ASN A 186 1 13 HELIX 9 9 CYS A 226 ALA A 239 1 14 HELIX 10 10 PRO A 256 ASN A 263 1 8 HELIX 11 11 GLN A 277 HIS A 283 1 7 HELIX 12 12 ILE A 292 GLY A 306 1 15 HELIX 13 13 SER A 308 SER A 314 5 7 HELIX 14 14 LEU B 15 LEU B 23 1 9 HELIX 15 15 GLU B 62 ALA B 80 1 19 HELIX 16 16 ILE B 107 GLY B 120 1 14 HELIX 17 17 ALA B 131 PHE B 138 5 8 HELIX 18 18 ALA B 147 ILE B 159 1 13 HELIX 19 19 GLU B 161 ASN B 164 5 4 HELIX 20 20 ASP B 171 GLY B 173 5 3 HELIX 21 21 GLY B 174 ASN B 186 1 13 HELIX 22 22 CYS B 226 ALA B 239 1 14 HELIX 23 23 PRO B 256 ASN B 263 1 8 HELIX 24 24 GLN B 277 HIS B 283 1 7 HELIX 25 25 ILE B 292 ASN B 305 1 14 HELIX 26 26 SER B 310 HIS B 315 1 6 SHEET 1 A 5 ILE A 4 SER A 8 0 SHEET 2 A 5 HIS A 52 VAL A 56 1 O TYR A 54 N PHE A 7 SHEET 3 A 5 ARG A 84 ILE A 89 1 O THR A 86 N VAL A 53 SHEET 4 A 5 HIS A 123 MET A 127 1 O ILE A 125 N ILE A 89 SHEET 5 A 5 VAL A 142 LEU A 145 1 O LEU A 145 N THR A 126 SHEET 1 B 2 VAL A 30 VAL A 31 0 SHEET 2 B 2 GLU A 43 ILE A 44 -1 O GLU A 43 N VAL A 31 SHEET 1 C 7 MET A 205 VAL A 208 0 SHEET 2 C 7 ASP A 188 LYS A 194 -1 N HIS A 193 O VAL A 206 SHEET 3 C 7 THR A 166 SER A 169 1 N ILE A 167 O ASP A 188 SHEET 4 C 7 ALA A 216 ALA A 223 1 O ILE A 217 N THR A 166 SHEET 5 C 7 VAL A 244 GLY A 251 1 O ILE A 247 N LEU A 218 SHEET 6 C 7 PHE A 266 THR A 272 1 O GLU A 267 N VAL A 244 SHEET 7 C 7 ILE A 287 ILE A 290 1 O GLN A 288 N VAL A 271 SHEET 1 D 5 ILE B 4 SER B 8 0 SHEET 2 D 5 HIS B 52 VAL B 56 1 O TYR B 54 N LYS B 5 SHEET 3 D 5 ARG B 84 ILE B 89 1 O VAL B 88 N ILE B 55 SHEET 4 D 5 HIS B 123 MET B 127 1 O ILE B 125 N ILE B 89 SHEET 5 D 5 VAL B 142 LEU B 145 1 O ASP B 143 N THR B 126 SHEET 1 E 2 VAL B 30 LYS B 34 0 SHEET 2 E 2 THR B 40 ILE B 44 -1 O GLU B 43 N VAL B 31 SHEET 1 F 7 MET B 205 GLY B 209 0 SHEET 2 F 7 ASP B 188 LYS B 194 -1 N LEU B 191 O VAL B 208 SHEET 3 F 7 THR B 166 SER B 169 1 N SER B 169 O ILE B 192 SHEET 4 F 7 VAL B 215 ALA B 223 1 O ILE B 217 N THR B 166 SHEET 5 F 7 ARG B 243 GLY B 251 1 O ILE B 247 N LEU B 218 SHEET 6 F 7 ALA B 268 THR B 272 1 O VAL B 270 N ALA B 246 SHEET 7 F 7 ILE B 287 ILE B 290 1 O ILE B 290 N VAL B 271 SITE 1 AC1 6 ASP A 224 THR A 225 CYS A 226 GLY A 227 SITE 2 AC1 6 THR A 228 HOH A 516 SITE 1 AC2 8 SER A 47 ARG A 49 SER A 308 VAL A 309 SITE 2 AC2 8 SER A 310 HOH A 511 HOH A 529 ARG B 104 SITE 1 AC3 8 SER A 132 GLN A 135 ASN A 144 TYR A 146 SITE 2 AC3 8 HOH A 501 LYS B 100 ASP B 101 LYS B 102 SITE 1 AC4 2 HIS A 52 TYR A 54 SITE 1 AC5 5 ASP B 224 THR B 225 CYS B 226 GLY B 227 SITE 2 AC5 5 THR B 228 SITE 1 AC6 7 ARG A 104 SER B 47 ARG B 49 SER B 308 SITE 2 AC6 7 VAL B 309 SER B 310 HOH B1121 SITE 1 AC7 7 ASP A 101 LYS A 102 SER B 132 GLN B 135 SITE 2 AC7 7 ASN B 144 TYR B 146 HOH B1103 SITE 1 AC8 2 HIS B 52 TYR B 54 CRYST1 170.310 170.310 61.750 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005872 0.003390 0.000000 0.00000 SCALE2 0.000000 0.006780 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016194 0.00000