HEADER LYASE 06-JUN-12 4FHD TITLE SPORE PHOTOPRODUCT LYASE COMPLEXED WITH DINUCLEOSIDE SPORE TITLE 2 PHOTOPRODUCT COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPORE PHOTOPRODUCT LYASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS THERMODENITRIFICANS; SOURCE 3 ORGANISM_TAXID: 420246; SOURCE 4 STRAIN: NG80-2; SOURCE 5 GENE: GTNG_2348; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE-3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: MODIFIED PETM11 KEYWDS PARTIAL TIM-BARREL, DNA REPAIR, DAMAGED DNA, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR A.BENJDIA,K.HEIL,T.R.M.BARENDS,T.CARELL,I.SCHLICHTING REVDAT 5 03-APR-24 4FHD 1 REMARK REVDAT 4 28-FEB-24 4FHD 1 REMARK SEQADV LINK REVDAT 3 21-NOV-12 4FHD 1 HETNAM REVDAT 2 31-OCT-12 4FHD 1 JRNL REVDAT 1 18-JUL-12 4FHD 0 JRNL AUTH A.BENJDIA,K.HEIL,T.R.BARENDS,T.CARELL,I.SCHLICHTING JRNL TITL STRUCTURAL INSIGHTS INTO RECOGNITION AND REPAIR OF UV-DNA JRNL TITL 2 DAMAGE BY SPORE PHOTOPRODUCT LYASE, A RADICAL SAM ENZYME. JRNL REF NUCLEIC ACIDS RES. V. 40 9308 2012 JRNL REFN ISSN 0305-1048 JRNL PMID 22761404 JRNL DOI 10.1093/NAR/GKS603 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 71.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 27252 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1440 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1990 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.76 REMARK 3 BIN R VALUE (WORKING SET) : 0.2350 REMARK 3 BIN FREE R VALUE SET COUNT : 119 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2802 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 103 REMARK 3 SOLVENT ATOMS : 112 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.32000 REMARK 3 B22 (A**2) : 0.04000 REMARK 3 B33 (A**2) : -0.36000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.199 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.172 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.103 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.594 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.917 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.899 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2980 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2087 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4041 ; 1.140 ; 1.997 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5013 ; 0.833 ; 3.005 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 339 ; 5.751 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 146 ;31.587 ;22.123 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 500 ;14.357 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;14.847 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 418 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3219 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 671 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1700 ; 0.593 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 691 ; 0.104 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2740 ; 1.137 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1280 ; 1.566 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1289 ; 2.659 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 3.40 REMARK 3 ION PROBE RADIUS : 2.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4FHD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1000072902. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28692 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 71.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.48400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: WT STRUCTURE WITHOUT SUBSTRATE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM LI-SULFATE, 100 MM TRIS/HCL, 19 REMARK 280 -27% PEG800, 70 MM HEGA-8, ANAEROBICALLY , PH 9.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.66000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.81000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.46000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.81000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.66000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.46000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -26 REMARK 465 LYS A -25 REMARK 465 HIS A -24 REMARK 465 HIS A -23 REMARK 465 HIS A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 PRO A -18 REMARK 465 MET A -17 REMARK 465 SER A -16 REMARK 465 ASP A -15 REMARK 465 TYR A -14 REMARK 465 ASP A -13 REMARK 465 ILE A -12 REMARK 465 PRO A -11 REMARK 465 THR A -10 REMARK 465 THR A -9 REMARK 465 GLU A -8 REMARK 465 ASN A -7 REMARK 465 LEU A -6 REMARK 465 TYR A -5 REMARK 465 PHE A -4 REMARK 465 GLN A -3 REMARK 465 GLY A -2 REMARK 465 ALA A -1 REMARK 465 MET A 0 REMARK 465 GLY A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 304 -72.63 -105.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 401 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 90 SG REMARK 620 2 SF4 A 401 S2 109.3 REMARK 620 3 SF4 A 401 S3 121.7 105.1 REMARK 620 4 SF4 A 401 S4 108.0 107.3 104.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 401 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 94 SG REMARK 620 2 SF4 A 401 S1 107.6 REMARK 620 3 SF4 A 401 S2 117.8 104.8 REMARK 620 4 SF4 A 401 S3 113.9 108.3 103.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 401 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 97 SG REMARK 620 2 SF4 A 401 S1 115.8 REMARK 620 3 SF4 A 401 S3 106.9 109.1 REMARK 620 4 SF4 A 401 S4 117.2 102.5 104.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 401 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 EEM A 402 O REMARK 620 2 SF4 A 401 S1 94.9 REMARK 620 3 SF4 A 401 S2 99.0 103.2 REMARK 620 4 SF4 A 401 S4 146.1 101.0 106.2 REMARK 620 5 EEM A 402 N 75.5 163.2 92.0 81.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SF4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EEM A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0TT A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POP A 409 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4FHC RELATED DB: PDB REMARK 900 RELATED ID: 4FHE RELATED DB: PDB REMARK 900 RELATED ID: 4FHF RELATED DB: PDB REMARK 900 RELATED ID: 4FHG RELATED DB: PDB DBREF 4FHD A 2 341 UNP A4IQU1 A4IQU1_GEOTN 2 341 SEQADV 4FHD MET A -26 UNP A4IQU1 EXPRESSION TAG SEQADV 4FHD LYS A -25 UNP A4IQU1 EXPRESSION TAG SEQADV 4FHD HIS A -24 UNP A4IQU1 EXPRESSION TAG SEQADV 4FHD HIS A -23 UNP A4IQU1 EXPRESSION TAG SEQADV 4FHD HIS A -22 UNP A4IQU1 EXPRESSION TAG SEQADV 4FHD HIS A -21 UNP A4IQU1 EXPRESSION TAG SEQADV 4FHD HIS A -20 UNP A4IQU1 EXPRESSION TAG SEQADV 4FHD HIS A -19 UNP A4IQU1 EXPRESSION TAG SEQADV 4FHD PRO A -18 UNP A4IQU1 EXPRESSION TAG SEQADV 4FHD MET A -17 UNP A4IQU1 EXPRESSION TAG SEQADV 4FHD SER A -16 UNP A4IQU1 EXPRESSION TAG SEQADV 4FHD ASP A -15 UNP A4IQU1 EXPRESSION TAG SEQADV 4FHD TYR A -14 UNP A4IQU1 EXPRESSION TAG SEQADV 4FHD ASP A -13 UNP A4IQU1 EXPRESSION TAG SEQADV 4FHD ILE A -12 UNP A4IQU1 EXPRESSION TAG SEQADV 4FHD PRO A -11 UNP A4IQU1 EXPRESSION TAG SEQADV 4FHD THR A -10 UNP A4IQU1 EXPRESSION TAG SEQADV 4FHD THR A -9 UNP A4IQU1 EXPRESSION TAG SEQADV 4FHD GLU A -8 UNP A4IQU1 EXPRESSION TAG SEQADV 4FHD ASN A -7 UNP A4IQU1 EXPRESSION TAG SEQADV 4FHD LEU A -6 UNP A4IQU1 EXPRESSION TAG SEQADV 4FHD TYR A -5 UNP A4IQU1 EXPRESSION TAG SEQADV 4FHD PHE A -4 UNP A4IQU1 EXPRESSION TAG SEQADV 4FHD GLN A -3 UNP A4IQU1 EXPRESSION TAG SEQADV 4FHD GLY A -2 UNP A4IQU1 EXPRESSION TAG SEQADV 4FHD ALA A -1 UNP A4IQU1 EXPRESSION TAG SEQADV 4FHD MET A 0 UNP A4IQU1 EXPRESSION TAG SEQADV 4FHD GLY A 1 UNP A4IQU1 EXPRESSION TAG SEQRES 1 A 368 MET LYS HIS HIS HIS HIS HIS HIS PRO MET SER ASP TYR SEQRES 2 A 368 ASP ILE PRO THR THR GLU ASN LEU TYR PHE GLN GLY ALA SEQRES 3 A 368 MET GLY LYS PRO PHE VAL PRO LYS LEU VAL TYR PHE GLU SEQRES 4 A 368 PRO GLU ALA LEU SER TYR PRO LEU GLY LYS GLU LEU TYR SEQRES 5 A 368 GLU LYS PHE THR GLN MET GLY ILE LYS ILE ARG GLU THR SEQRES 6 A 368 THR SER HIS ASN GLN VAL ARG GLY ILE PRO GLY GLU THR SEQRES 7 A 368 GLU LEU ALA ARG TYR ARG ASN ALA LYS SER THR LEU VAL SEQRES 8 A 368 VAL GLY VAL ARG ARG THR LEU LYS PHE ASP SER SER LYS SEQRES 9 A 368 PRO SER ALA GLU TYR ALA ILE PRO LEU ALA THR GLY CYS SEQRES 10 A 368 MET GLY HIS CYS HIS TYR CYS TYR LEU GLN THR THR LEU SEQRES 11 A 368 GLY SER LYS PRO TYR ILE ARG VAL TYR VAL ASN LEU ASP SEQRES 12 A 368 ASP ILE PHE ALA GLN ALA GLN LYS TYR ILE ASN GLU ARG SEQRES 13 A 368 ALA PRO GLU ILE THR ARG PHE GLU ALA ALA CYS THR SER SEQRES 14 A 368 ASP ILE VAL GLY ILE ASP HIS LEU THR HIS SER LEU LYS SEQRES 15 A 368 LYS ALA ILE GLU PHE ILE GLY ALA THR ASP TYR GLY ARG SEQRES 16 A 368 LEU ARG PHE VAL THR LYS TYR GLU HIS VAL ASP HIS LEU SEQRES 17 A 368 LEU ASP ALA ARG HIS ASN GLY LYS THR ARG PHE ARG PHE SEQRES 18 A 368 SER ILE ASN SER ARG TYR VAL ILE ASN HIS PHE GLU PRO SEQRES 19 A 368 GLY THR SER SER PHE ASP GLY ARG LEU ALA ALA ALA ARG SEQRES 20 A 368 LYS VAL ALA GLY ALA GLY TYR LYS LEU GLY PHE VAL VAL SEQRES 21 A 368 ALA PRO ILE TYR ARG HIS GLU GLY TRP GLU ARG GLY TYR SEQRES 22 A 368 PHE GLU LEU PHE GLN GLU LEU ALA ARG GLN LEU GLU GLY SEQRES 23 A 368 MET ASP LEU SER ASP LEU THR PHE GLU LEU ILE GLN HIS SEQRES 24 A 368 ARG PHE THR LYS PRO ALA LYS ARG VAL ILE GLU GLN ARG SEQRES 25 A 368 TYR PRO LYS THR ARG LEU ASP LEU ASP GLU THR LYS ARG SEQRES 26 A 368 LYS TYR LYS TRP GLY ARG TYR GLY ILE GLY LYS TYR VAL SEQRES 27 A 368 TYR ARG ASP GLU GLU ALA LYS GLU LEU GLU ASP THR MET SEQRES 28 A 368 ARG ARG TYR ILE GLU GLN PHE PHE PRO GLY ALA TYR VAL SEQRES 29 A 368 GLN TYR PHE THR HET SF4 A 401 8 HET EEM A 402 27 HET SO4 A 403 5 HET SO4 A 404 5 HET SO4 A 405 5 HET SO4 A 406 5 HET SO4 A 407 5 HET 0TT A 408 34 HET POP A 409 9 HETNAM SF4 IRON/SULFUR CLUSTER HETNAM EEM [(3S)-3-AMINO-4-HYDROXY-4-OXO-BUTYL]-[[(2S,3S,4R,5R)-5- HETNAM 2 EEM (6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL]- HETNAM 3 EEM METHYL-SELANIUM HETNAM SO4 SULFATE ION HETNAM 0TT 1-[(2R,4S,5R)-5-(HYDROXYMETHYL)-4-OXIDANYL-OXOLAN-2- HETNAM 2 0TT YL]-5-[[(5R)-1-[(2R,4S,5R)-5-(HYDROXYMETHYL)-4- HETNAM 3 0TT OXIDANYL-OXOLAN-2-YL]-5-METHYL-2,4-BIS(OXIDANYLIDENE)- HETNAM 4 0TT 1,3-DIAZINAN-5-YL]METHYL]PYRIMIDINE-2,4-DIONE HETNAM POP PYROPHOSPHATE 2- HETSYN EEM SE-ADENOSYLSELENOMETHIONINE FORMUL 2 SF4 FE4 S4 FORMUL 3 EEM C15 H23 N6 O5 SE 1+ FORMUL 4 SO4 5(O4 S 2-) FORMUL 9 0TT C20 H28 N4 O10 FORMUL 10 POP H2 O7 P2 2- FORMUL 11 HOH *112(H2 O) HELIX 1 1 PRO A 13 SER A 17 5 5 HELIX 2 2 TYR A 18 MET A 31 1 14 HELIX 3 3 THR A 51 LYS A 60 1 10 HELIX 4 4 TYR A 98 LEU A 103 1 6 HELIX 5 5 ASN A 114 ALA A 130 1 17 HELIX 6 6 ASP A 143 HIS A 149 1 7 HELIX 7 7 HIS A 152 THR A 164 1 13 HELIX 8 8 VAL A 178 LEU A 182 5 5 HELIX 9 9 SER A 198 GLU A 206 1 9 HELIX 10 10 SER A 211 ALA A 225 1 15 HELIX 11 11 GLY A 241 LEU A 257 1 17 HELIX 12 12 THR A 275 TYR A 286 1 12 HELIX 13 13 ASP A 294 ARG A 298 5 5 HELIX 14 14 ARG A 313 PHE A 332 1 20 SHEET 1 A 5 LYS A 34 GLU A 37 0 SHEET 2 A 5 LEU A 8 PHE A 11 1 N VAL A 9 O ARG A 36 SHEET 3 A 5 THR A 62 GLY A 66 1 O VAL A 65 N TYR A 10 SHEET 4 A 5 ILE A 109 TYR A 112 1 O ILE A 109 N VAL A 64 SHEET 5 A 5 ALA A 87 THR A 88 -1 N THR A 88 O ARG A 110 SHEET 1 B 8 SER A 75 SER A 76 0 SHEET 2 B 8 ALA A 80 ALA A 83 -1 O ALA A 80 N SER A 76 SHEET 3 B 8 THR A 134 GLU A 137 1 O GLU A 137 N TYR A 82 SHEET 4 B 8 GLY A 167 THR A 173 1 O ARG A 168 N PHE A 136 SHEET 5 B 8 THR A 190 ILE A 196 1 O ARG A 191 N LEU A 169 SHEET 6 B 8 LYS A 228 ILE A 236 1 O LYS A 228 N PHE A 192 SHEET 7 B 8 THR A 266 GLN A 271 1 O GLU A 268 N VAL A 233 SHEET 8 B 8 TYR A 336 PHE A 340 1 O GLN A 338 N PHE A 267 SHEET 1 C 2 LYS A 299 LYS A 301 0 SHEET 2 C 2 LYS A 309 VAL A 311 -1 O LYS A 309 N LYS A 301 LINK SG CYS A 90 FE1 SF4 A 401 1555 1555 2.31 LINK SG CYS A 94 FE4 SF4 A 401 1555 1555 2.31 LINK SG CYS A 97 FE2 SF4 A 401 1555 1555 2.21 LINK FE3 SF4 A 401 O EEM A 402 1555 1555 2.10 LINK FE3 SF4 A 401 N EEM A 402 1555 1555 2.31 CISPEP 1 LYS A 77 PRO A 78 0 3.51 CISPEP 2 ALA A 130 PRO A 131 0 7.99 CISPEP 3 ALA A 234 PRO A 235 0 -5.56 SITE 1 AC1 7 CYS A 90 GLY A 92 CYS A 94 CYS A 97 SITE 2 AC1 7 LEU A 99 LYS A 174 EEM A 402 SITE 1 AC2 17 TYR A 96 CYS A 97 TYR A 98 ALA A 139 SITE 2 AC2 17 SER A 142 ASP A 143 VAL A 172 LYS A 174 SITE 3 AC2 17 SER A 195 VAL A 232 ALA A 234 PRO A 235 SITE 4 AC2 17 GLN A 271 HIS A 272 ARG A 273 SF4 A 401 SITE 5 AC2 17 0TT A 408 SITE 1 AC3 6 ARG A 135 ARG A 170 ARG A 191 LYS A 228 SITE 2 AC3 6 GLN A 338 HOH A 563 SITE 1 AC4 4 ARG A 304 TYR A 305 GLY A 306 HOH A 608 SITE 1 AC5 4 ARG A 68 THR A 88 THR A 141 HOH A 565 SITE 1 AC6 6 HIS A 41 ASN A 42 VAL A 67 ARG A 68 SITE 2 AC6 6 ARG A 69 THR A 70 SITE 1 AC7 2 ARG A 36 HOH A 531 SITE 1 AC8 15 SER A 76 LYS A 77 PRO A 78 SER A 79 SITE 2 AC8 15 TYR A 98 THR A 102 CYS A 140 ARG A 193 SITE 3 AC8 15 GLU A 268 ILE A 270 ARG A 273 TYR A 339 SITE 4 AC8 15 EEM A 402 POP A 409 HOH A 603 SITE 1 AC9 5 ARG A 273 LYS A 301 LYS A 309 0TT A 408 SITE 2 AC9 5 HOH A 603 CRYST1 53.320 58.920 131.620 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018755 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016972 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007598 0.00000