HEADER LYASE 11-JUN-12 4FIR TITLE CRYSTAL STRUCTURE OF PYRIDOXAL BIOSYNTHESIS LYASE PDXS FROM PYROCOCCUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PYRIDOXAL BIOSYNTHESIS LYASE PDXS; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 EC: 4.-.-.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 3 ORGANISM_TAXID: 70601; SOURCE 4 STRAIN: ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3; SOURCE 5 GENE: PDXS, PH1355; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-21A(+) KEYWDS PYROCOCCUS HORIKOSHII, PDXS, PYRIDOXAL BIOSYNTHESIS LYASE, PYRIDOXAL KEYWDS 2 5 -PHOSPHATE (PLP), LYASE EXPDTA X-RAY DIFFRACTION AUTHOR A.MATSUURA,J.Y.YOON,H.J.YOON,H.H.LEE,S.W.SUH REVDAT 2 13-SEP-23 4FIR 1 REMARK LINK REVDAT 1 14-NOV-12 4FIR 0 JRNL AUTH A.MATSUURA,J.Y.YOON,H.J.YOON,H.H.LEE,S.W.SUH JRNL TITL CRYSTAL STRUCTURE OF PYRIDOXAL BIOSYNTHESIS LYASE PDXS FROM JRNL TITL 2 PYROCOCCUS HORIKOSHII. JRNL REF MOL.CELLS V. 34 407 2012 JRNL REFN ISSN 1016-8478 JRNL PMID 23104439 JRNL DOI 10.1007/S10059-012-0198-8 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.3_928 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 39493 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1983 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.8455 - 7.4357 1.00 2775 141 0.1531 0.1775 REMARK 3 2 7.4357 - 5.9170 1.00 2711 164 0.1951 0.2188 REMARK 3 3 5.9170 - 5.1735 1.00 2743 163 0.2092 0.2488 REMARK 3 4 5.1735 - 4.7025 1.00 2704 164 0.1736 0.2116 REMARK 3 5 4.7025 - 4.3665 1.00 2755 122 0.1462 0.1827 REMARK 3 6 4.3665 - 4.1098 1.00 2707 157 0.1529 0.1667 REMARK 3 7 4.1098 - 3.9044 1.00 2729 125 0.1643 0.2235 REMARK 3 8 3.9044 - 3.7348 1.00 2745 131 0.1759 0.1992 REMARK 3 9 3.7348 - 3.5913 1.00 2767 140 0.2049 0.2853 REMARK 3 10 3.5913 - 3.4675 1.00 2664 147 0.2103 0.2604 REMARK 3 11 3.4675 - 3.3593 1.00 2736 143 0.2173 0.2660 REMARK 3 12 3.3593 - 3.2634 0.98 2674 126 0.2147 0.3009 REMARK 3 13 3.2634 - 3.1775 0.94 2554 131 0.2575 0.3334 REMARK 3 14 3.1775 - 3.1001 0.83 2246 129 0.2803 0.3533 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.31 REMARK 3 B_SOL : 33.27 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.220 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 57.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 11.45890 REMARK 3 B22 (A**2) : -19.21390 REMARK 3 B33 (A**2) : 7.75490 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 7.46900 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 15437 REMARK 3 ANGLE : 1.632 20814 REMARK 3 CHIRALITY : 0.131 2382 REMARK 3 PLANARITY : 0.009 2694 REMARK 3 DIHEDRAL : 17.814 5820 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN 'A' AND (RESSEQ 11:315 OR RESSEQ REMARK 3 321:333 ) REMARK 3 SELECTION : CHAIN 'B' AND (RESSEQ 11:315 OR RESSEQ REMARK 3 321:333 ) REMARK 3 ATOM PAIRS NUMBER : 2408 REMARK 3 RMSD : 0.083 REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: CHAIN 'A' AND (RESSEQ 11:315 OR RESSEQ REMARK 3 321:333 ) REMARK 3 SELECTION : CHAIN 'C' AND (RESSEQ 11:315 OR RESSEQ REMARK 3 321:333 ) REMARK 3 ATOM PAIRS NUMBER : 2408 REMARK 3 RMSD : 0.103 REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: CHAIN 'A' AND (RESSEQ 11:315 OR RESSEQ REMARK 3 321:333 ) REMARK 3 SELECTION : CHAIN 'D' AND (RESSEQ 11:315 OR RESSEQ REMARK 3 321:333 ) REMARK 3 ATOM PAIRS NUMBER : 2408 REMARK 3 RMSD : 0.106 REMARK 3 NCS OPERATOR : 4 REMARK 3 REFERENCE SELECTION: CHAIN 'A' AND (RESSEQ 11:315 OR RESSEQ REMARK 3 321:333 ) REMARK 3 SELECTION : CHAIN 'E' AND (RESSEQ 11:315 OR RESSEQ REMARK 3 321:333 ) REMARK 3 ATOM PAIRS NUMBER : 2408 REMARK 3 RMSD : 0.103 REMARK 3 NCS OPERATOR : 5 REMARK 3 REFERENCE SELECTION: CHAIN 'A' AND (RESSEQ 11:315 OR RESSEQ REMARK 3 321:333 ) REMARK 3 SELECTION : CHAIN 'F' AND (RESSEQ 11:315 OR RESSEQ REMARK 3 321:333 ) REMARK 3 ATOM PAIRS NUMBER : 2408 REMARK 3 RMSD : 0.099 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4FIR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1000072952. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39532 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.23000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 1ZNN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM IMIDAZOLE, 35% 2-METHYL-2,4 REMARK 280 -PENTANEDIOL, 200MM MGCL2, PH 8.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 89.53250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 70710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -128.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 334 REMARK 465 ILE A 335 REMARK 465 GLY B 334 REMARK 465 ILE B 335 REMARK 465 GLY C 334 REMARK 465 ILE C 335 REMARK 465 GLY D 334 REMARK 465 ILE D 335 REMARK 465 GLY E 334 REMARK 465 ILE E 335 REMARK 465 GLY F 334 REMARK 465 ILE F 335 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 317 CG CD REMARK 470 MET A 318 CG SD CE REMARK 470 ARG A 319 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 321 CG CD OE1 NE2 REMARK 470 ILE A 323 CG1 CG2 CD1 REMARK 470 GLU A 324 CG CD OE1 OE2 REMARK 470 GLU A 325 CG CD OE1 OE2 REMARK 470 LEU A 326 CG CD1 CD2 REMARK 470 GLN A 327 CG CD OE1 NE2 REMARK 470 VAL A 328 CG1 CG2 REMARK 470 ARG A 329 CG CD NE CZ NH1 NH2 REMARK 470 MET A 330 CG SD CE REMARK 470 GLU A 331 CG CD OE1 OE2 REMARK 470 GLU A 332 CG CD OE1 OE2 REMARK 470 ARG A 333 CG CD NE CZ NH1 NH2 REMARK 470 PRO B 317 CG CD REMARK 470 MET B 318 CG SD CE REMARK 470 ARG B 319 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 321 CB CG CD OE1 NE2 REMARK 470 ILE B 323 CG1 CG2 CD1 REMARK 470 GLU B 324 CG CD OE1 OE2 REMARK 470 GLU B 325 CG CD OE1 OE2 REMARK 470 LEU B 326 CG CD1 CD2 REMARK 470 GLN B 327 CG CD OE1 NE2 REMARK 470 VAL B 328 CG1 CG2 REMARK 470 ARG B 329 CG CD NE CZ NH1 NH2 REMARK 470 MET B 330 CG SD CE REMARK 470 GLU B 331 CG CD OE1 OE2 REMARK 470 GLU B 332 CG CD OE1 OE2 REMARK 470 ARG B 333 CG CD NE CZ NH1 NH2 REMARK 470 PRO C 317 CG CD REMARK 470 MET C 318 CG SD CE REMARK 470 ARG C 319 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 321 CG CD OE1 NE2 REMARK 470 ILE C 323 CG1 CG2 CD1 REMARK 470 GLU C 324 CG CD OE1 OE2 REMARK 470 GLU C 325 CG CD OE1 OE2 REMARK 470 LEU C 326 CG CD1 CD2 REMARK 470 GLN C 327 CG CD OE1 NE2 REMARK 470 VAL C 328 CG1 CG2 REMARK 470 ARG C 329 CG CD NE CZ NH1 NH2 REMARK 470 MET C 330 CG SD CE REMARK 470 GLU C 331 CG CD OE1 OE2 REMARK 470 GLU C 332 CG CD OE1 OE2 REMARK 470 ARG C 333 CG CD NE CZ NH1 NH2 REMARK 470 PRO D 317 CG CD REMARK 470 MET D 318 CG SD CE REMARK 470 ARG D 319 CG CD NE CZ NH1 NH2 REMARK 470 GLN D 321 CG CD OE1 NE2 REMARK 470 ILE D 323 CG1 CG2 CD1 REMARK 470 GLU D 324 CG CD OE1 OE2 REMARK 470 GLU D 325 CG CD OE1 OE2 REMARK 470 LEU D 326 CG CD1 CD2 REMARK 470 GLN D 327 CG CD OE1 NE2 REMARK 470 VAL D 328 CG1 CG2 REMARK 470 ARG D 329 CG CD NE CZ NH1 NH2 REMARK 470 MET D 330 CG SD CE REMARK 470 GLU D 331 CG CD OE1 OE2 REMARK 470 GLU D 332 CG CD OE1 OE2 REMARK 470 ARG D 333 CG CD NE CZ NH1 NH2 REMARK 470 PRO E 317 CG CD REMARK 470 MET E 318 CG SD CE REMARK 470 ARG E 319 CG CD NE CZ NH1 NH2 REMARK 470 GLN E 321 CG CD OE1 NE2 REMARK 470 ILE E 323 CG1 CG2 CD1 REMARK 470 GLU E 324 CG CD OE1 OE2 REMARK 470 GLU E 325 CG CD OE1 OE2 REMARK 470 LEU E 326 CG CD1 CD2 REMARK 470 GLN E 327 CG CD OE1 NE2 REMARK 470 VAL E 328 CG1 CG2 REMARK 470 ARG E 329 CG CD NE CZ NH1 NH2 REMARK 470 MET E 330 CG SD CE REMARK 470 GLU E 331 CG CD OE1 OE2 REMARK 470 GLU E 332 CG CD OE1 OE2 REMARK 470 ARG E 333 CG CD NE CZ NH1 NH2 REMARK 470 PRO F 317 CG CD REMARK 470 MET F 318 CG SD CE REMARK 470 ARG F 319 CG CD NE CZ NH1 NH2 REMARK 470 GLN F 321 CG CD OE1 NE2 REMARK 470 ILE F 323 CG1 CG2 CD1 REMARK 470 GLU F 324 CG CD OE1 OE2 REMARK 470 GLU F 325 CG CD OE1 OE2 REMARK 470 LEU F 326 CG CD1 CD2 REMARK 470 GLN F 327 CG CD OE1 NE2 REMARK 470 VAL F 328 CG1 CG2 REMARK 470 ARG F 329 CG CD NE CZ NH1 NH2 REMARK 470 MET F 330 CG SD CE REMARK 470 GLU F 331 CG CD OE1 OE2 REMARK 470 GLU F 332 CG CD OE1 OE2 REMARK 470 ARG F 333 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N ASN D 286 OE1 GLU D 316 1.91 REMARK 500 CE LYS B 87 C1 R5P B 401 1.95 REMARK 500 CE LYS E 87 C1 R5P E 401 2.00 REMARK 500 O MET C 8 OG1 THR C 12 2.11 REMARK 500 NZ LYS B 87 C2 R5P B 401 2.17 REMARK 500 O GLU F 325 O HOH F 511 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG E 38 OE1 GLU E 218 1655 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO E 317 CA PRO E 317 CB -0.143 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL B 250 CG1 - CB - CG2 ANGL. DEV. = 11.2 DEGREES REMARK 500 PRO B 317 N - CA - CB ANGL. DEV. = 8.7 DEGREES REMARK 500 ARG C 14 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 PRO C 317 N - CA - CB ANGL. DEV. = 9.8 DEGREES REMARK 500 ARG D 14 NE - CZ - NH1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG D 14 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 PRO E 317 N - CA - CB ANGL. DEV. = 7.3 DEGREES REMARK 500 PRO F 317 C - N - CA ANGL. DEV. = 14.0 DEGREES REMARK 500 PRO F 317 N - CA - CB ANGL. DEV. = 9.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 300 63.58 -117.03 REMARK 500 MET A 318 -158.67 49.76 REMARK 500 ARG A 319 160.69 170.90 REMARK 500 LEU A 326 -20.05 64.61 REMARK 500 VAL A 328 108.90 -47.70 REMARK 500 GLU A 332 -40.38 150.13 REMARK 500 LYS B 3 -59.98 -131.23 REMARK 500 MET B 67 103.36 11.51 REMARK 500 ALA B 68 151.43 -49.53 REMARK 500 PRO B 249 -6.44 -59.67 REMARK 500 SER B 311 61.59 -104.60 REMARK 500 LEU B 326 -13.07 66.43 REMARK 500 VAL B 328 73.28 41.49 REMARK 500 GLU B 332 -60.90 -143.61 REMARK 500 ASP C 2 -81.17 -104.37 REMARK 500 LEU C 326 -13.66 65.54 REMARK 500 VAL C 328 73.85 40.61 REMARK 500 MET C 330 37.56 -82.91 REMARK 500 GLU C 332 -60.63 -140.68 REMARK 500 ASP D 2 -160.23 -166.86 REMARK 500 SER D 311 61.74 -104.57 REMARK 500 PRO D 317 -171.63 -176.02 REMARK 500 ARG D 319 -156.92 -90.12 REMARK 500 ALA D 322 -98.19 12.69 REMARK 500 LEU D 326 -13.55 66.50 REMARK 500 VAL D 328 73.87 40.80 REMARK 500 MET D 330 37.44 -82.93 REMARK 500 GLU D 332 -60.89 -140.90 REMARK 500 LEU E 202 -71.35 -52.97 REMARK 500 ILE E 222 -60.14 -96.47 REMARK 500 PRO E 317 -41.25 -149.99 REMARK 500 MET E 318 -130.59 80.97 REMARK 500 ARG E 319 -155.43 -138.12 REMARK 500 LEU E 326 -19.25 63.85 REMARK 500 VAL E 328 109.45 -46.75 REMARK 500 GLU E 332 -60.76 -142.59 REMARK 500 ASP F 2 -86.09 -123.64 REMARK 500 GLU F 316 -169.85 161.87 REMARK 500 PRO F 317 66.82 66.28 REMARK 500 ARG F 319 -89.10 -127.60 REMARK 500 LEU F 326 -13.75 65.87 REMARK 500 VAL F 328 73.43 41.15 REMARK 500 GLU F 332 -60.72 -142.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG B 66 MET B 67 135.15 REMARK 500 ARG B 319 GLY B 320 126.06 REMARK 500 GLY D 315 GLU D 316 -148.25 REMARK 500 GLU D 316 PRO D 317 -133.90 REMARK 500 GLN D 321 ALA D 322 133.64 REMARK 500 GLU E 316 PRO E 317 129.74 REMARK 500 MET E 318 ARG E 319 -136.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 HIS A 300 -12.18 REMARK 500 GLN A 327 -18.52 REMARK 500 GLU A 331 -12.27 REMARK 500 GLU A 332 -11.85 REMARK 500 GLY D 315 10.48 REMARK 500 GLN E 327 -19.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 R5P F 401 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE R5P A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE R5P B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE R5P C 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE R5P D 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE R5P E 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE R5P F 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4FIQ RELATED DB: PDB DBREF 4FIR A 1 335 UNP O59080 PDXS_PYRHO 1 335 DBREF 4FIR B 1 335 UNP O59080 PDXS_PYRHO 1 335 DBREF 4FIR C 1 335 UNP O59080 PDXS_PYRHO 1 335 DBREF 4FIR D 1 335 UNP O59080 PDXS_PYRHO 1 335 DBREF 4FIR E 1 335 UNP O59080 PDXS_PYRHO 1 335 DBREF 4FIR F 1 335 UNP O59080 PDXS_PYRHO 1 335 SEQRES 1 A 335 MET ASP LYS LEU LYS ILE ILE MET GLU LYS GLY THR GLU SEQRES 2 A 335 ARG LEU LYS ARG GLY PHE ALA LYS MET VAL LYS GLY GLY SEQRES 3 A 335 VAL ILE MET ASP VAL THR ASN ALA GLU GLN ALA ARG ILE SEQRES 4 A 335 ALA GLU GLU ALA GLY ALA VAL ALA VAL MET ALA LEU HIS SEQRES 5 A 335 LYS VAL PRO ALA ASP ILE ARG LYS ALA GLY GLY VAL ALA SEQRES 6 A 335 ARG MET ALA PRO VAL GLU LYS ILE GLN GLU ILE MET ASP SEQRES 7 A 335 ALA VAL THR ILE PRO VAL MET ALA LYS CYS ARG ILE GLY SEQRES 8 A 335 HIS GLU ALA GLU ALA ARG ILE LEU GLU ALA LEU GLY VAL SEQRES 9 A 335 ASP MET ILE ASP GLU SER GLU VAL LEU THR PRO ALA ASP SEQRES 10 A 335 PRO PHE PHE HIS ILE TYR LYS LYS LYS PHE THR ALA PRO SEQRES 11 A 335 PHE VAL CYS GLY ALA ARG ASN LEU GLY GLU ALA VAL ARG SEQRES 12 A 335 ARG ILE TRP GLU GLY ALA ALA MET ILE ARG THR LYS GLY SEQRES 13 A 335 GLU ALA GLY THR GLY ASN ILE ILE GLU ALA VAL ARG HIS SEQRES 14 A 335 VAL ARG LEU VAL ASN GLU ASN ILE ARG LEU ILE GLN ARG SEQRES 15 A 335 MET THR ASP GLU GLU ILE TYR GLY VAL ALA GLU LYS PHE SEQRES 16 A 335 ALA GLU PRO TYR LEU ARG LEU ALA PHE SER VAL LYS GLU SEQRES 17 A 335 ILE SER GLY LEU PRO LYS ARG VAL LEU GLU ASN GLU PRO SEQRES 18 A 335 ILE TYR GLU GLY PHE THR TYR ARG GLU ILE VAL GLU ASP SEQRES 19 A 335 ILE TYR LYS ILE LEU LEU GLU ILE LYS LYS LEU GLY ARG SEQRES 20 A 335 LEU PRO VAL VAL ASN PHE ALA ALA GLY GLY VAL ALA THR SEQRES 21 A 335 PRO ALA ASP ALA ALA LEU MET MET ALA MET GLY MET ASP SEQRES 22 A 335 GLY VAL PHE VAL GLY SER GLY ILE PHE LYS SER SER ASN SEQRES 23 A 335 PRO PRO LYS MET ALA ARG ALA ILE VAL GLU ALA VAL ASN SEQRES 24 A 335 HIS TRP ASP GLU PRO ASP VAL LEU ALA GLU ILE SER ARG SEQRES 25 A 335 GLU ILE GLY GLU PRO MET ARG GLY GLN ALA ILE GLU GLU SEQRES 26 A 335 LEU GLN VAL ARG MET GLU GLU ARG GLY ILE SEQRES 1 B 335 MET ASP LYS LEU LYS ILE ILE MET GLU LYS GLY THR GLU SEQRES 2 B 335 ARG LEU LYS ARG GLY PHE ALA LYS MET VAL LYS GLY GLY SEQRES 3 B 335 VAL ILE MET ASP VAL THR ASN ALA GLU GLN ALA ARG ILE SEQRES 4 B 335 ALA GLU GLU ALA GLY ALA VAL ALA VAL MET ALA LEU HIS SEQRES 5 B 335 LYS VAL PRO ALA ASP ILE ARG LYS ALA GLY GLY VAL ALA SEQRES 6 B 335 ARG MET ALA PRO VAL GLU LYS ILE GLN GLU ILE MET ASP SEQRES 7 B 335 ALA VAL THR ILE PRO VAL MET ALA LYS CYS ARG ILE GLY SEQRES 8 B 335 HIS GLU ALA GLU ALA ARG ILE LEU GLU ALA LEU GLY VAL SEQRES 9 B 335 ASP MET ILE ASP GLU SER GLU VAL LEU THR PRO ALA ASP SEQRES 10 B 335 PRO PHE PHE HIS ILE TYR LYS LYS LYS PHE THR ALA PRO SEQRES 11 B 335 PHE VAL CYS GLY ALA ARG ASN LEU GLY GLU ALA VAL ARG SEQRES 12 B 335 ARG ILE TRP GLU GLY ALA ALA MET ILE ARG THR LYS GLY SEQRES 13 B 335 GLU ALA GLY THR GLY ASN ILE ILE GLU ALA VAL ARG HIS SEQRES 14 B 335 VAL ARG LEU VAL ASN GLU ASN ILE ARG LEU ILE GLN ARG SEQRES 15 B 335 MET THR ASP GLU GLU ILE TYR GLY VAL ALA GLU LYS PHE SEQRES 16 B 335 ALA GLU PRO TYR LEU ARG LEU ALA PHE SER VAL LYS GLU SEQRES 17 B 335 ILE SER GLY LEU PRO LYS ARG VAL LEU GLU ASN GLU PRO SEQRES 18 B 335 ILE TYR GLU GLY PHE THR TYR ARG GLU ILE VAL GLU ASP SEQRES 19 B 335 ILE TYR LYS ILE LEU LEU GLU ILE LYS LYS LEU GLY ARG SEQRES 20 B 335 LEU PRO VAL VAL ASN PHE ALA ALA GLY GLY VAL ALA THR SEQRES 21 B 335 PRO ALA ASP ALA ALA LEU MET MET ALA MET GLY MET ASP SEQRES 22 B 335 GLY VAL PHE VAL GLY SER GLY ILE PHE LYS SER SER ASN SEQRES 23 B 335 PRO PRO LYS MET ALA ARG ALA ILE VAL GLU ALA VAL ASN SEQRES 24 B 335 HIS TRP ASP GLU PRO ASP VAL LEU ALA GLU ILE SER ARG SEQRES 25 B 335 GLU ILE GLY GLU PRO MET ARG GLY GLN ALA ILE GLU GLU SEQRES 26 B 335 LEU GLN VAL ARG MET GLU GLU ARG GLY ILE SEQRES 1 C 335 MET ASP LYS LEU LYS ILE ILE MET GLU LYS GLY THR GLU SEQRES 2 C 335 ARG LEU LYS ARG GLY PHE ALA LYS MET VAL LYS GLY GLY SEQRES 3 C 335 VAL ILE MET ASP VAL THR ASN ALA GLU GLN ALA ARG ILE SEQRES 4 C 335 ALA GLU GLU ALA GLY ALA VAL ALA VAL MET ALA LEU HIS SEQRES 5 C 335 LYS VAL PRO ALA ASP ILE ARG LYS ALA GLY GLY VAL ALA SEQRES 6 C 335 ARG MET ALA PRO VAL GLU LYS ILE GLN GLU ILE MET ASP SEQRES 7 C 335 ALA VAL THR ILE PRO VAL MET ALA LYS CYS ARG ILE GLY SEQRES 8 C 335 HIS GLU ALA GLU ALA ARG ILE LEU GLU ALA LEU GLY VAL SEQRES 9 C 335 ASP MET ILE ASP GLU SER GLU VAL LEU THR PRO ALA ASP SEQRES 10 C 335 PRO PHE PHE HIS ILE TYR LYS LYS LYS PHE THR ALA PRO SEQRES 11 C 335 PHE VAL CYS GLY ALA ARG ASN LEU GLY GLU ALA VAL ARG SEQRES 12 C 335 ARG ILE TRP GLU GLY ALA ALA MET ILE ARG THR LYS GLY SEQRES 13 C 335 GLU ALA GLY THR GLY ASN ILE ILE GLU ALA VAL ARG HIS SEQRES 14 C 335 VAL ARG LEU VAL ASN GLU ASN ILE ARG LEU ILE GLN ARG SEQRES 15 C 335 MET THR ASP GLU GLU ILE TYR GLY VAL ALA GLU LYS PHE SEQRES 16 C 335 ALA GLU PRO TYR LEU ARG LEU ALA PHE SER VAL LYS GLU SEQRES 17 C 335 ILE SER GLY LEU PRO LYS ARG VAL LEU GLU ASN GLU PRO SEQRES 18 C 335 ILE TYR GLU GLY PHE THR TYR ARG GLU ILE VAL GLU ASP SEQRES 19 C 335 ILE TYR LYS ILE LEU LEU GLU ILE LYS LYS LEU GLY ARG SEQRES 20 C 335 LEU PRO VAL VAL ASN PHE ALA ALA GLY GLY VAL ALA THR SEQRES 21 C 335 PRO ALA ASP ALA ALA LEU MET MET ALA MET GLY MET ASP SEQRES 22 C 335 GLY VAL PHE VAL GLY SER GLY ILE PHE LYS SER SER ASN SEQRES 23 C 335 PRO PRO LYS MET ALA ARG ALA ILE VAL GLU ALA VAL ASN SEQRES 24 C 335 HIS TRP ASP GLU PRO ASP VAL LEU ALA GLU ILE SER ARG SEQRES 25 C 335 GLU ILE GLY GLU PRO MET ARG GLY GLN ALA ILE GLU GLU SEQRES 26 C 335 LEU GLN VAL ARG MET GLU GLU ARG GLY ILE SEQRES 1 D 335 MET ASP LYS LEU LYS ILE ILE MET GLU LYS GLY THR GLU SEQRES 2 D 335 ARG LEU LYS ARG GLY PHE ALA LYS MET VAL LYS GLY GLY SEQRES 3 D 335 VAL ILE MET ASP VAL THR ASN ALA GLU GLN ALA ARG ILE SEQRES 4 D 335 ALA GLU GLU ALA GLY ALA VAL ALA VAL MET ALA LEU HIS SEQRES 5 D 335 LYS VAL PRO ALA ASP ILE ARG LYS ALA GLY GLY VAL ALA SEQRES 6 D 335 ARG MET ALA PRO VAL GLU LYS ILE GLN GLU ILE MET ASP SEQRES 7 D 335 ALA VAL THR ILE PRO VAL MET ALA LYS CYS ARG ILE GLY SEQRES 8 D 335 HIS GLU ALA GLU ALA ARG ILE LEU GLU ALA LEU GLY VAL SEQRES 9 D 335 ASP MET ILE ASP GLU SER GLU VAL LEU THR PRO ALA ASP SEQRES 10 D 335 PRO PHE PHE HIS ILE TYR LYS LYS LYS PHE THR ALA PRO SEQRES 11 D 335 PHE VAL CYS GLY ALA ARG ASN LEU GLY GLU ALA VAL ARG SEQRES 12 D 335 ARG ILE TRP GLU GLY ALA ALA MET ILE ARG THR LYS GLY SEQRES 13 D 335 GLU ALA GLY THR GLY ASN ILE ILE GLU ALA VAL ARG HIS SEQRES 14 D 335 VAL ARG LEU VAL ASN GLU ASN ILE ARG LEU ILE GLN ARG SEQRES 15 D 335 MET THR ASP GLU GLU ILE TYR GLY VAL ALA GLU LYS PHE SEQRES 16 D 335 ALA GLU PRO TYR LEU ARG LEU ALA PHE SER VAL LYS GLU SEQRES 17 D 335 ILE SER GLY LEU PRO LYS ARG VAL LEU GLU ASN GLU PRO SEQRES 18 D 335 ILE TYR GLU GLY PHE THR TYR ARG GLU ILE VAL GLU ASP SEQRES 19 D 335 ILE TYR LYS ILE LEU LEU GLU ILE LYS LYS LEU GLY ARG SEQRES 20 D 335 LEU PRO VAL VAL ASN PHE ALA ALA GLY GLY VAL ALA THR SEQRES 21 D 335 PRO ALA ASP ALA ALA LEU MET MET ALA MET GLY MET ASP SEQRES 22 D 335 GLY VAL PHE VAL GLY SER GLY ILE PHE LYS SER SER ASN SEQRES 23 D 335 PRO PRO LYS MET ALA ARG ALA ILE VAL GLU ALA VAL ASN SEQRES 24 D 335 HIS TRP ASP GLU PRO ASP VAL LEU ALA GLU ILE SER ARG SEQRES 25 D 335 GLU ILE GLY GLU PRO MET ARG GLY GLN ALA ILE GLU GLU SEQRES 26 D 335 LEU GLN VAL ARG MET GLU GLU ARG GLY ILE SEQRES 1 E 335 MET ASP LYS LEU LYS ILE ILE MET GLU LYS GLY THR GLU SEQRES 2 E 335 ARG LEU LYS ARG GLY PHE ALA LYS MET VAL LYS GLY GLY SEQRES 3 E 335 VAL ILE MET ASP VAL THR ASN ALA GLU GLN ALA ARG ILE SEQRES 4 E 335 ALA GLU GLU ALA GLY ALA VAL ALA VAL MET ALA LEU HIS SEQRES 5 E 335 LYS VAL PRO ALA ASP ILE ARG LYS ALA GLY GLY VAL ALA SEQRES 6 E 335 ARG MET ALA PRO VAL GLU LYS ILE GLN GLU ILE MET ASP SEQRES 7 E 335 ALA VAL THR ILE PRO VAL MET ALA LYS CYS ARG ILE GLY SEQRES 8 E 335 HIS GLU ALA GLU ALA ARG ILE LEU GLU ALA LEU GLY VAL SEQRES 9 E 335 ASP MET ILE ASP GLU SER GLU VAL LEU THR PRO ALA ASP SEQRES 10 E 335 PRO PHE PHE HIS ILE TYR LYS LYS LYS PHE THR ALA PRO SEQRES 11 E 335 PHE VAL CYS GLY ALA ARG ASN LEU GLY GLU ALA VAL ARG SEQRES 12 E 335 ARG ILE TRP GLU GLY ALA ALA MET ILE ARG THR LYS GLY SEQRES 13 E 335 GLU ALA GLY THR GLY ASN ILE ILE GLU ALA VAL ARG HIS SEQRES 14 E 335 VAL ARG LEU VAL ASN GLU ASN ILE ARG LEU ILE GLN ARG SEQRES 15 E 335 MET THR ASP GLU GLU ILE TYR GLY VAL ALA GLU LYS PHE SEQRES 16 E 335 ALA GLU PRO TYR LEU ARG LEU ALA PHE SER VAL LYS GLU SEQRES 17 E 335 ILE SER GLY LEU PRO LYS ARG VAL LEU GLU ASN GLU PRO SEQRES 18 E 335 ILE TYR GLU GLY PHE THR TYR ARG GLU ILE VAL GLU ASP SEQRES 19 E 335 ILE TYR LYS ILE LEU LEU GLU ILE LYS LYS LEU GLY ARG SEQRES 20 E 335 LEU PRO VAL VAL ASN PHE ALA ALA GLY GLY VAL ALA THR SEQRES 21 E 335 PRO ALA ASP ALA ALA LEU MET MET ALA MET GLY MET ASP SEQRES 22 E 335 GLY VAL PHE VAL GLY SER GLY ILE PHE LYS SER SER ASN SEQRES 23 E 335 PRO PRO LYS MET ALA ARG ALA ILE VAL GLU ALA VAL ASN SEQRES 24 E 335 HIS TRP ASP GLU PRO ASP VAL LEU ALA GLU ILE SER ARG SEQRES 25 E 335 GLU ILE GLY GLU PRO MET ARG GLY GLN ALA ILE GLU GLU SEQRES 26 E 335 LEU GLN VAL ARG MET GLU GLU ARG GLY ILE SEQRES 1 F 335 MET ASP LYS LEU LYS ILE ILE MET GLU LYS GLY THR GLU SEQRES 2 F 335 ARG LEU LYS ARG GLY PHE ALA LYS MET VAL LYS GLY GLY SEQRES 3 F 335 VAL ILE MET ASP VAL THR ASN ALA GLU GLN ALA ARG ILE SEQRES 4 F 335 ALA GLU GLU ALA GLY ALA VAL ALA VAL MET ALA LEU HIS SEQRES 5 F 335 LYS VAL PRO ALA ASP ILE ARG LYS ALA GLY GLY VAL ALA SEQRES 6 F 335 ARG MET ALA PRO VAL GLU LYS ILE GLN GLU ILE MET ASP SEQRES 7 F 335 ALA VAL THR ILE PRO VAL MET ALA LYS CYS ARG ILE GLY SEQRES 8 F 335 HIS GLU ALA GLU ALA ARG ILE LEU GLU ALA LEU GLY VAL SEQRES 9 F 335 ASP MET ILE ASP GLU SER GLU VAL LEU THR PRO ALA ASP SEQRES 10 F 335 PRO PHE PHE HIS ILE TYR LYS LYS LYS PHE THR ALA PRO SEQRES 11 F 335 PHE VAL CYS GLY ALA ARG ASN LEU GLY GLU ALA VAL ARG SEQRES 12 F 335 ARG ILE TRP GLU GLY ALA ALA MET ILE ARG THR LYS GLY SEQRES 13 F 335 GLU ALA GLY THR GLY ASN ILE ILE GLU ALA VAL ARG HIS SEQRES 14 F 335 VAL ARG LEU VAL ASN GLU ASN ILE ARG LEU ILE GLN ARG SEQRES 15 F 335 MET THR ASP GLU GLU ILE TYR GLY VAL ALA GLU LYS PHE SEQRES 16 F 335 ALA GLU PRO TYR LEU ARG LEU ALA PHE SER VAL LYS GLU SEQRES 17 F 335 ILE SER GLY LEU PRO LYS ARG VAL LEU GLU ASN GLU PRO SEQRES 18 F 335 ILE TYR GLU GLY PHE THR TYR ARG GLU ILE VAL GLU ASP SEQRES 19 F 335 ILE TYR LYS ILE LEU LEU GLU ILE LYS LYS LEU GLY ARG SEQRES 20 F 335 LEU PRO VAL VAL ASN PHE ALA ALA GLY GLY VAL ALA THR SEQRES 21 F 335 PRO ALA ASP ALA ALA LEU MET MET ALA MET GLY MET ASP SEQRES 22 F 335 GLY VAL PHE VAL GLY SER GLY ILE PHE LYS SER SER ASN SEQRES 23 F 335 PRO PRO LYS MET ALA ARG ALA ILE VAL GLU ALA VAL ASN SEQRES 24 F 335 HIS TRP ASP GLU PRO ASP VAL LEU ALA GLU ILE SER ARG SEQRES 25 F 335 GLU ILE GLY GLU PRO MET ARG GLY GLN ALA ILE GLU GLU SEQRES 26 F 335 LEU GLN VAL ARG MET GLU GLU ARG GLY ILE HET R5P A 401 13 HET R5P B 401 13 HET R5P C 401 13 HET R5P D 401 13 HET R5P E 401 13 HET R5P F 401 13 HETNAM R5P RIBOSE-5-PHOSPHATE FORMUL 7 R5P 6(C5 H11 O8 P) FORMUL 13 HOH *72(H2 O) HELIX 1 1 MET A 1 LYS A 24 1 24 HELIX 2 2 ASN A 33 ALA A 43 1 11 HELIX 3 3 VAL A 54 GLY A 62 1 9 HELIX 4 4 PRO A 69 VAL A 80 1 12 HELIX 5 5 HIS A 92 LEU A 102 1 11 HELIX 6 6 TYR A 123 PHE A 127 5 5 HELIX 7 7 ASN A 137 GLU A 147 1 11 HELIX 8 8 ILE A 163 ARG A 182 1 20 HELIX 9 9 THR A 184 GLU A 197 1 14 HELIX 10 10 TYR A 199 SER A 210 1 12 HELIX 11 11 TYR A 228 GLY A 246 1 19 HELIX 12 12 THR A 260 MET A 270 1 11 HELIX 13 13 GLY A 278 LYS A 283 1 6 HELIX 14 14 ASN A 286 HIS A 300 1 15 HELIX 15 15 GLU A 303 SER A 311 1 9 HELIX 16 16 LEU B 4 LYS B 24 1 21 HELIX 17 17 ASN B 33 ALA B 43 1 11 HELIX 18 18 VAL B 54 GLY B 62 1 9 HELIX 19 19 PRO B 69 VAL B 80 1 12 HELIX 20 20 HIS B 92 LEU B 102 1 11 HELIX 21 21 TYR B 123 PHE B 127 5 5 HELIX 22 22 ASN B 137 GLU B 147 1 11 HELIX 23 23 ILE B 163 ARG B 182 1 20 HELIX 24 24 THR B 184 GLU B 197 1 14 HELIX 25 25 TYR B 199 SER B 210 1 12 HELIX 26 26 TYR B 228 GLY B 246 1 19 HELIX 27 27 THR B 260 MET B 270 1 11 HELIX 28 28 GLY B 278 LYS B 283 1 6 HELIX 29 29 ASN B 286 HIS B 300 1 15 HELIX 30 30 GLU B 303 SER B 311 1 9 HELIX 31 31 ASP C 2 LYS C 24 1 23 HELIX 32 32 ASN C 33 ALA C 43 1 11 HELIX 33 33 VAL C 54 GLY C 62 1 9 HELIX 34 34 PRO C 69 VAL C 80 1 12 HELIX 35 35 HIS C 92 LEU C 102 1 11 HELIX 36 36 TYR C 123 PHE C 127 5 5 HELIX 37 37 ASN C 137 GLU C 147 1 11 HELIX 38 38 ILE C 163 ARG C 182 1 20 HELIX 39 39 THR C 184 GLU C 197 1 14 HELIX 40 40 TYR C 199 SER C 210 1 12 HELIX 41 41 TYR C 228 GLY C 246 1 19 HELIX 42 42 THR C 260 MET C 270 1 11 HELIX 43 43 GLY C 278 LYS C 283 1 6 HELIX 44 44 ASN C 286 HIS C 300 1 15 HELIX 45 45 GLU C 303 SER C 311 1 9 HELIX 46 46 LYS D 3 LYS D 24 1 22 HELIX 47 47 ASN D 33 ALA D 43 1 11 HELIX 48 48 VAL D 54 GLY D 62 1 9 HELIX 49 49 PRO D 69 VAL D 80 1 12 HELIX 50 50 HIS D 92 LEU D 102 1 11 HELIX 51 51 TYR D 123 PHE D 127 5 5 HELIX 52 52 ASN D 137 GLU D 147 1 11 HELIX 53 53 ILE D 163 ARG D 182 1 20 HELIX 54 54 THR D 184 GLU D 197 1 14 HELIX 55 55 TYR D 199 SER D 210 1 12 HELIX 56 56 TYR D 228 GLY D 246 1 19 HELIX 57 57 THR D 260 MET D 270 1 11 HELIX 58 58 GLY D 278 LYS D 283 1 6 HELIX 59 59 ASN D 286 HIS D 300 1 15 HELIX 60 60 GLU D 303 SER D 311 1 9 HELIX 61 61 ASP E 2 LYS E 24 1 23 HELIX 62 62 ASN E 33 ALA E 43 1 11 HELIX 63 63 VAL E 54 GLY E 62 1 9 HELIX 64 64 PRO E 69 VAL E 80 1 12 HELIX 65 65 HIS E 92 LEU E 102 1 11 HELIX 66 66 TYR E 123 PHE E 127 5 5 HELIX 67 67 ASN E 137 GLU E 147 1 11 HELIX 68 68 ILE E 163 ARG E 182 1 20 HELIX 69 69 THR E 184 GLU E 197 1 14 HELIX 70 70 LEU E 200 SER E 210 1 11 HELIX 71 71 TYR E 228 GLY E 246 1 19 HELIX 72 72 THR E 260 MET E 270 1 11 HELIX 73 73 GLY E 278 LYS E 283 1 6 HELIX 74 74 ASN E 286 HIS E 300 1 15 HELIX 75 75 GLU E 303 SER E 311 1 9 HELIX 76 76 LYS F 3 LYS F 24 1 22 HELIX 77 77 ASN F 33 ALA F 43 1 11 HELIX 78 78 VAL F 54 GLY F 62 1 9 HELIX 79 79 PRO F 69 VAL F 80 1 12 HELIX 80 80 HIS F 92 LEU F 102 1 11 HELIX 81 81 TYR F 123 PHE F 127 5 5 HELIX 82 82 ASN F 137 GLU F 147 1 11 HELIX 83 83 ILE F 163 ARG F 182 1 20 HELIX 84 84 THR F 184 GLU F 197 1 14 HELIX 85 85 TYR F 199 SER F 210 1 12 HELIX 86 86 TYR F 228 GLY F 246 1 19 HELIX 87 87 THR F 260 MET F 270 1 11 HELIX 88 88 GLY F 278 LYS F 283 1 6 HELIX 89 89 ASN F 286 HIS F 300 1 15 HELIX 90 90 GLU F 303 SER F 311 1 9 SHEET 1 A 9 VAL A 27 VAL A 31 0 SHEET 2 A 9 ALA A 47 ALA A 50 1 O MET A 49 N VAL A 31 SHEET 3 A 9 VAL A 84 ARG A 89 1 O MET A 85 N ALA A 50 SHEET 4 A 9 MET A 106 SER A 110 1 O ASP A 108 N ALA A 86 SHEET 5 A 9 PHE A 131 ALA A 135 1 O VAL A 132 N ILE A 107 SHEET 6 A 9 MET A 151 THR A 154 1 O ARG A 153 N CYS A 133 SHEET 7 A 9 VAL A 251 ALA A 255 1 O PHE A 253 N ILE A 152 SHEET 8 A 9 VAL A 275 VAL A 277 1 O PHE A 276 N ALA A 254 SHEET 9 A 9 VAL A 27 VAL A 31 1 N ILE A 28 O VAL A 275 SHEET 1 B 2 PRO A 221 TYR A 223 0 SHEET 2 B 2 PHE A 226 THR A 227 -1 O PHE A 226 N TYR A 223 SHEET 1 C 9 VAL B 27 VAL B 31 0 SHEET 2 C 9 ALA B 47 ALA B 50 1 O MET B 49 N VAL B 31 SHEET 3 C 9 VAL B 84 ARG B 89 1 O MET B 85 N ALA B 50 SHEET 4 C 9 MET B 106 SER B 110 1 O ASP B 108 N ALA B 86 SHEET 5 C 9 PHE B 131 ALA B 135 1 O VAL B 132 N ILE B 107 SHEET 6 C 9 ALA B 149 THR B 154 1 O ARG B 153 N CYS B 133 SHEET 7 C 9 VAL B 251 ALA B 255 1 O VAL B 251 N ILE B 152 SHEET 8 C 9 VAL B 275 VAL B 277 1 O PHE B 276 N ALA B 254 SHEET 9 C 9 VAL B 27 VAL B 31 1 N ILE B 28 O VAL B 275 SHEET 1 D 2 PRO B 221 TYR B 223 0 SHEET 2 D 2 PHE B 226 THR B 227 -1 O PHE B 226 N TYR B 223 SHEET 1 E 9 VAL C 27 VAL C 31 0 SHEET 2 E 9 ALA C 47 ALA C 50 1 O MET C 49 N VAL C 31 SHEET 3 E 9 VAL C 84 ARG C 89 1 O MET C 85 N ALA C 50 SHEET 4 E 9 MET C 106 SER C 110 1 O ASP C 108 N ALA C 86 SHEET 5 E 9 PHE C 131 ALA C 135 1 O VAL C 132 N ILE C 107 SHEET 6 E 9 ALA C 149 THR C 154 1 O ARG C 153 N CYS C 133 SHEET 7 E 9 VAL C 251 ALA C 255 1 O VAL C 251 N ILE C 152 SHEET 8 E 9 VAL C 275 VAL C 277 1 O PHE C 276 N ALA C 254 SHEET 9 E 9 VAL C 27 VAL C 31 1 N ILE C 28 O VAL C 275 SHEET 1 F 2 PRO C 221 TYR C 223 0 SHEET 2 F 2 PHE C 226 THR C 227 -1 O PHE C 226 N TYR C 223 SHEET 1 G 9 VAL D 27 VAL D 31 0 SHEET 2 G 9 ALA D 47 ALA D 50 1 O MET D 49 N VAL D 31 SHEET 3 G 9 VAL D 84 ARG D 89 1 O MET D 85 N ALA D 50 SHEET 4 G 9 MET D 106 SER D 110 1 O ASP D 108 N ALA D 86 SHEET 5 G 9 PHE D 131 ALA D 135 1 O VAL D 132 N ILE D 107 SHEET 6 G 9 ALA D 149 THR D 154 1 O ARG D 153 N CYS D 133 SHEET 7 G 9 VAL D 251 ALA D 255 1 O PHE D 253 N ILE D 152 SHEET 8 G 9 VAL D 275 VAL D 277 1 O PHE D 276 N ALA D 254 SHEET 9 G 9 VAL D 27 VAL D 31 1 N ILE D 28 O VAL D 275 SHEET 1 H 2 PRO D 221 TYR D 223 0 SHEET 2 H 2 PHE D 226 THR D 227 -1 O PHE D 226 N TYR D 223 SHEET 1 I 9 VAL E 27 VAL E 31 0 SHEET 2 I 9 ALA E 47 ALA E 50 1 O MET E 49 N VAL E 31 SHEET 3 I 9 VAL E 84 ARG E 89 1 O MET E 85 N ALA E 50 SHEET 4 I 9 MET E 106 SER E 110 1 O ASP E 108 N CYS E 88 SHEET 5 I 9 PHE E 131 ALA E 135 1 O VAL E 132 N ILE E 107 SHEET 6 I 9 MET E 151 THR E 154 1 O ARG E 153 N CYS E 133 SHEET 7 I 9 VAL E 251 ALA E 255 1 O PHE E 253 N ILE E 152 SHEET 8 I 9 VAL E 275 VAL E 277 1 O PHE E 276 N ALA E 254 SHEET 9 I 9 VAL E 27 VAL E 31 1 N ILE E 28 O VAL E 275 SHEET 1 J 2 PRO E 221 TYR E 223 0 SHEET 2 J 2 PHE E 226 THR E 227 -1 O PHE E 226 N TYR E 223 SHEET 1 K 9 VAL F 27 VAL F 31 0 SHEET 2 K 9 ALA F 47 ALA F 50 1 O MET F 49 N VAL F 31 SHEET 3 K 9 VAL F 84 ARG F 89 1 O MET F 85 N ALA F 50 SHEET 4 K 9 MET F 106 SER F 110 1 O ASP F 108 N ALA F 86 SHEET 5 K 9 PHE F 131 ALA F 135 1 O VAL F 132 N ILE F 107 SHEET 6 K 9 MET F 151 THR F 154 1 O ARG F 153 N CYS F 133 SHEET 7 K 9 VAL F 251 ALA F 255 1 O PHE F 253 N ILE F 152 SHEET 8 K 9 VAL F 275 VAL F 277 1 O PHE F 276 N ALA F 254 SHEET 9 K 9 VAL F 27 VAL F 31 1 N ILE F 28 O VAL F 275 SHEET 1 L 2 PRO F 221 TYR F 223 0 SHEET 2 L 2 PHE F 226 THR F 227 -1 O PHE F 226 N TYR F 223 LINK NZ LYS A 87 C1 R5P A 401 1555 1555 1.46 LINK NZ LYS B 87 C1 R5P B 401 1555 1555 1.47 LINK NZ LYS C 87 C1 R5P C 401 1555 1555 1.46 LINK CE LYS C 87 C1 R5P C 401 1555 1555 1.52 LINK NZ LYS D 87 C1 R5P D 401 1555 1555 1.52 LINK NZ LYS E 87 C1 R5P E 401 1555 1555 1.50 CISPEP 1 GLY A 315 GLU A 316 0 25.85 CISPEP 2 GLU A 316 PRO A 317 0 15.66 SITE 1 AC1 11 ASP A 30 PRO A 55 LYS A 87 SER A 110 SITE 2 AC1 11 ARG A 153 ALA A 158 GLY A 159 GLY A 256 SITE 3 AC1 11 GLY A 257 GLY A 278 SER A 279 SITE 1 AC2 14 ASP B 30 PRO B 55 LYS B 87 ASP B 108 SITE 2 AC2 14 SER B 110 VAL B 112 ARG B 153 ALA B 158 SITE 3 AC2 14 GLY B 159 GLY B 256 GLY B 257 VAL B 277 SITE 4 AC2 14 GLY B 278 SER B 279 SITE 1 AC3 10 ASP C 30 LYS C 87 ASP C 108 ARG C 153 SITE 2 AC3 10 ALA C 158 GLY C 159 GLY C 256 GLY C 257 SITE 3 AC3 10 GLY C 278 SER C 279 SITE 1 AC4 13 ASP D 30 PRO D 55 LYS D 87 ASP D 108 SITE 2 AC4 13 SER D 110 VAL D 112 ALA D 158 GLY D 159 SITE 3 AC4 13 GLY D 256 GLY D 257 VAL D 277 GLY D 278 SITE 4 AC4 13 SER D 279 SITE 1 AC5 13 ASP E 30 PRO E 55 LYS E 87 ASP E 108 SITE 2 AC5 13 VAL E 112 ARG E 153 ALA E 158 GLY E 159 SITE 3 AC5 13 GLY E 256 GLY E 257 VAL E 277 GLY E 278 SITE 4 AC5 13 SER E 279 SITE 1 AC6 9 ASP F 30 LYS F 87 ARG F 153 ALA F 158 SITE 2 AC6 9 GLY F 159 GLY F 256 GLY F 257 GLY F 278 SITE 3 AC6 9 SER F 279 CRYST1 59.165 179.065 109.359 90.00 102.53 90.00 P 1 21 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016902 0.000000 0.003756 0.00000 SCALE2 0.000000 0.005585 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009367 0.00000