HEADER OXIDOREDUCTASE 12-JUN-12 4FJU TITLE CRYSTAL STRUCTURE OF UREIDOGLYCOLATE DEHYDROGENASE IN TERNARY COMPLEX TITLE 2 WITH NADH AND GLYOXYLATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UREIDOGLYCOLATE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.1.1.154; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 316385; SOURCE 4 STRAIN: DH10B; SOURCE 5 GENE: ALLD, ECDH10B_0473; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS ALLD, NAD(P)H-DEPENDENT OXIDOREDUCTASE, UREIDE PATHWAY, KEYWDS 2 UREIDOGLYCOLATE, OXALURATE, ANTIPARALLEL BETA-SHEET FOLD, KEYWDS 3 UREIDOGLYCOLATE DEHYDROGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.I.KIM,S.RHEE REVDAT 5 13-SEP-23 4FJU 1 REMARK SEQADV HETSYN REVDAT 4 17-JUL-19 4FJU 1 REMARK REVDAT 3 14-FEB-18 4FJU 1 REMARK REVDAT 2 15-NOV-17 4FJU 1 REMARK REVDAT 1 16-JAN-13 4FJU 0 JRNL AUTH M.I.KIM,I.SHIN,S.CHO,J.LEE,S.RHEE JRNL TITL STRUCTURAL AND FUNCTIONAL INSIGHTS INTO (S)-UREIDOGLYCOLATE JRNL TITL 2 DEHYDROGENASE, A METABOLIC BRANCH POINT ENZYME IN NITROGEN JRNL TITL 3 UTILIZATION. JRNL REF PLOS ONE V. 7 52066 2012 JRNL REFN ESSN 1932-6203 JRNL PMID 23284870 JRNL DOI 10.1371/JOURNAL.PONE.0052066 REMARK 2 REMARK 2 RESOLUTION. 1.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.2_869 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 74082 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.490 REMARK 3 FREE R VALUE TEST SET COUNT : 7080 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.4010 - 4.2672 1.00 5936 152 0.2119 0.1978 REMARK 3 2 4.2672 - 3.3878 0.99 5650 145 0.1904 0.2150 REMARK 3 3 3.3878 - 2.9598 1.00 5634 142 0.2258 0.2620 REMARK 3 4 2.9598 - 2.6892 1.00 5619 144 0.2222 0.2354 REMARK 3 5 2.6892 - 2.4965 1.00 5588 143 0.2418 0.2649 REMARK 3 6 2.4965 - 2.3494 1.00 5541 142 0.2382 0.2634 REMARK 3 7 2.3494 - 2.2317 0.98 5466 136 0.2558 0.3003 REMARK 3 8 2.2317 - 2.1346 0.99 5491 140 0.2555 0.2668 REMARK 3 9 2.1346 - 2.0524 1.00 5518 142 0.2382 0.2677 REMARK 3 10 2.0524 - 1.9816 1.00 5541 141 0.2526 0.2746 REMARK 3 11 1.9816 - 1.9197 1.00 5519 141 0.2629 0.3156 REMARK 3 12 1.9197 - 1.8648 1.00 5510 141 0.2825 0.3516 REMARK 3 13 1.8648 - 1.8157 1.00 5558 142 0.2918 0.3404 REMARK 3 14 1.8157 - 1.7714 1.00 5509 140 0.2993 0.2813 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 41.94 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.490 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.570 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.11200 REMARK 3 B22 (A**2) : -0.11200 REMARK 3 B33 (A**2) : 0.22400 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5158 REMARK 3 ANGLE : 1.141 7006 REMARK 3 CHIRALITY : 0.075 764 REMARK 3 PLANARITY : 0.004 919 REMARK 3 DIHEDRAL : 15.610 1882 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 1:129) REMARK 3 ORIGIN FOR THE GROUP (A): 52.4693 -28.6684 -14.7074 REMARK 3 T TENSOR REMARK 3 T11: 0.0959 T22: 0.2005 REMARK 3 T33: 0.1930 T12: 0.1559 REMARK 3 T13: -0.0911 T23: -0.1059 REMARK 3 L TENSOR REMARK 3 L11: 0.0408 L22: 0.3015 REMARK 3 L33: 0.2961 L12: -0.0025 REMARK 3 L13: 0.0974 L23: -0.1353 REMARK 3 S TENSOR REMARK 3 S11: 0.0806 S12: 0.0659 S13: -0.1090 REMARK 3 S21: 0.0274 S22: 0.1012 S23: -0.0352 REMARK 3 S31: 0.1849 S32: 0.2058 S33: 0.4968 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 130:291) REMARK 3 ORIGIN FOR THE GROUP (A): 48.3637 -12.0085 -13.6381 REMARK 3 T TENSOR REMARK 3 T11: 0.0097 T22: 0.1014 REMARK 3 T33: 0.0760 T12: -0.0105 REMARK 3 T13: -0.0282 T23: -0.0576 REMARK 3 L TENSOR REMARK 3 L11: 0.1315 L22: 0.1045 REMARK 3 L33: 0.1335 L12: 0.0433 REMARK 3 L13: 0.1090 L23: 0.0968 REMARK 3 S TENSOR REMARK 3 S11: -0.0273 S12: 0.0532 S13: -0.0564 REMARK 3 S21: -0.0059 S22: 0.1041 S23: -0.0671 REMARK 3 S31: -0.0238 S32: 0.1151 S33: 0.0462 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 292:338) REMARK 3 ORIGIN FOR THE GROUP (A): 59.7575 -15.9267 -27.9330 REMARK 3 T TENSOR REMARK 3 T11: 0.1436 T22: 0.4295 REMARK 3 T33: 0.1693 T12: -0.0557 REMARK 3 T13: 0.0267 T23: -0.0730 REMARK 3 L TENSOR REMARK 3 L11: 0.0423 L22: 0.0808 REMARK 3 L33: 0.1066 L12: 0.0066 REMARK 3 L13: 0.0667 L23: 0.0269 REMARK 3 S TENSOR REMARK 3 S11: -0.0496 S12: 0.0155 S13: 0.0113 REMARK 3 S21: -0.0365 S22: 0.1234 S23: -0.0451 REMARK 3 S31: -0.0008 S32: 0.2207 S33: 0.0128 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 4:58) REMARK 3 ORIGIN FOR THE GROUP (A): 14.7963 4.3607 -12.1910 REMARK 3 T TENSOR REMARK 3 T11: 0.3918 T22: 0.3329 REMARK 3 T33: 0.3456 T12: 0.2441 REMARK 3 T13: -0.1596 T23: -0.1390 REMARK 3 L TENSOR REMARK 3 L11: 0.0012 L22: 0.0007 REMARK 3 L33: -0.0006 L12: -0.0003 REMARK 3 L13: 0.0009 L23: 0.0005 REMARK 3 S TENSOR REMARK 3 S11: -0.0317 S12: -0.0330 S13: 0.0371 REMARK 3 S21: 0.0441 S22: 0.0157 S23: 0.0634 REMARK 3 S31: -0.0561 S32: -0.0540 S33: -0.0152 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 59:164) REMARK 3 ORIGIN FOR THE GROUP (A): 23.7678 -10.4301 -16.8229 REMARK 3 T TENSOR REMARK 3 T11: 0.1224 T22: 0.1227 REMARK 3 T33: 0.1035 T12: 0.0332 REMARK 3 T13: -0.0246 T23: -0.0106 REMARK 3 L TENSOR REMARK 3 L11: 0.1269 L22: 0.0445 REMARK 3 L33: 0.1631 L12: 0.0554 REMARK 3 L13: 0.1056 L23: 0.0218 REMARK 3 S TENSOR REMARK 3 S11: -0.0857 S12: -0.0968 S13: -0.0107 REMARK 3 S21: -0.0561 S22: -0.0050 S23: -0.0043 REMARK 3 S31: -0.0766 S32: -0.1140 S33: -0.1357 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 165:210) REMARK 3 ORIGIN FOR THE GROUP (A): 36.8909 7.7133 -17.2109 REMARK 3 T TENSOR REMARK 3 T11: 0.2214 T22: 0.1718 REMARK 3 T33: 0.1782 T12: -0.0560 REMARK 3 T13: -0.0739 T23: -0.0364 REMARK 3 L TENSOR REMARK 3 L11: 0.1219 L22: 0.0729 REMARK 3 L33: 0.0746 L12: -0.0677 REMARK 3 L13: -0.0329 L23: -0.0297 REMARK 3 S TENSOR REMARK 3 S11: -0.0969 S12: -0.0809 S13: 0.1000 REMARK 3 S21: -0.0196 S22: 0.0242 S23: 0.0101 REMARK 3 S31: -0.0786 S32: -0.0104 S33: -0.0660 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 211:315) REMARK 3 ORIGIN FOR THE GROUP (A): 33.9772 -4.9301 -12.1053 REMARK 3 T TENSOR REMARK 3 T11: 0.1347 T22: 0.1092 REMARK 3 T33: 0.0950 T12: 0.0019 REMARK 3 T13: -0.0335 T23: -0.0143 REMARK 3 L TENSOR REMARK 3 L11: 0.1035 L22: 0.0342 REMARK 3 L33: 0.0842 L12: 0.0177 REMARK 3 L13: 0.0562 L23: 0.0524 REMARK 3 S TENSOR REMARK 3 S11: -0.0574 S12: -0.0743 S13: 0.0448 REMARK 3 S21: -0.0344 S22: 0.0323 S23: 0.0383 REMARK 3 S31: -0.0832 S32: -0.0065 S33: -0.0039 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4FJU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1000072988. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 6C1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2398 REMARK 200 MONOCHROMATOR : MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74082 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.770 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 15.70 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 46.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.77 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 15.30 REMARK 200 R MERGE FOR SHELL (I) : 0.58300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: PDB ENTRY 3QGR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES, 4.0M NACL, PH 6.0, REMARK 280 EVAPORATION, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 81.37800 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 81.37800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.72650 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 81.37800 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 81.37800 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 30.72650 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 81.37800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 81.37800 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 30.72650 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 81.37800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 81.37800 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 30.72650 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -70.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 506 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 537 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 575 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 517 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 518 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 591 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 622 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 685 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 743 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 793 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 THR A 339 REMARK 465 SER A 340 REMARK 465 TYR A 341 REMARK 465 GLU A 342 REMARK 465 THR A 343 REMARK 465 LYS A 344 REMARK 465 ASN A 345 REMARK 465 PRO A 346 REMARK 465 PHE A 347 REMARK 465 ALA A 348 REMARK 465 GLN A 349 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 ILE B 3 REMARK 465 ALA B 316 REMARK 465 ALA B 317 REMARK 465 VAL B 318 REMARK 465 GLU B 319 REMARK 465 GLY B 320 REMARK 465 ILE B 321 REMARK 465 GLU B 322 REMARK 465 ILE B 323 REMARK 465 VAL B 324 REMARK 465 ASP B 325 REMARK 465 ASP B 326 REMARK 465 ILE B 327 REMARK 465 TYR B 328 REMARK 465 GLN B 329 REMARK 465 TYR B 330 REMARK 465 LEU B 331 REMARK 465 ILE B 332 REMARK 465 SER B 333 REMARK 465 ASP B 334 REMARK 465 ALA B 335 REMARK 465 LEU B 336 REMARK 465 TYR B 337 REMARK 465 ASN B 338 REMARK 465 THR B 339 REMARK 465 SER B 340 REMARK 465 TYR B 341 REMARK 465 GLU B 342 REMARK 465 THR B 343 REMARK 465 LYS B 344 REMARK 465 ASN B 345 REMARK 465 PRO B 346 REMARK 465 PHE B 347 REMARK 465 ALA B 348 REMARK 465 GLN B 349 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SD MET B 287 O HOH B 863 1.80 REMARK 500 O HOH B 625 O HOH B 711 1.81 REMARK 500 O HOH B 841 O HOH B 843 1.81 REMARK 500 O HOH B 680 O HOH B 852 1.82 REMARK 500 O HOH A 547 O HOH A 627 1.82 REMARK 500 O HOH B 686 O HOH B 837 1.83 REMARK 500 OH TYR A 337 O HOH A 805 1.83 REMARK 500 O HOH B 774 O HOH B 826 1.84 REMARK 500 O GLY B 45 O HOH B 842 1.84 REMARK 500 O HOH B 729 O HOH B 847 1.84 REMARK 500 O HOH B 734 O HOH B 840 1.86 REMARK 500 O HOH A 631 O HOH A 813 1.86 REMARK 500 NH1 ARG A 129 O HOH A 798 1.86 REMARK 500 NH2 ARG A 189 O HOH A 645 1.88 REMARK 500 OG SER A 194 O HOH A 820 1.89 REMARK 500 O HOH B 668 O HOH B 863 1.91 REMARK 500 O HOH A 675 O HOH B 723 1.92 REMARK 500 O HOH B 785 O HOH B 798 1.92 REMARK 500 O HOH A 607 O HOH A 766 1.94 REMARK 500 C GLY B 45 O HOH B 842 1.94 REMARK 500 O HOH B 660 O HOH B 749 1.95 REMARK 500 O HOH A 690 O HOH A 809 1.95 REMARK 500 O ALA A 188 O HOH A 762 1.96 REMARK 500 N ARG B 39 O HOH B 849 1.96 REMARK 500 O HOH B 624 O HOH B 787 1.96 REMARK 500 N LEU B 21 O HOH B 794 1.96 REMARK 500 O HOH B 695 O HOH B 786 1.96 REMARK 500 O ALA B 19 O HOH B 801 1.97 REMARK 500 ND2 ASN B 204 O HOH B 856 1.98 REMARK 500 O HOH B 625 O HOH B 736 1.99 REMARK 500 NH2 ARG B 23 O HOH B 867 1.99 REMARK 500 O HOH A 727 O HOH A 809 1.99 REMARK 500 O HOH B 527 O HOH B 763 2.01 REMARK 500 O HOH A 814 O HOH A 821 2.01 REMARK 500 O PRO B 297 O HOH B 667 2.01 REMARK 500 O HOH B 729 O HOH B 820 2.02 REMARK 500 O HOH A 547 O HOH A 638 2.03 REMARK 500 NE ARG A 113 O HOH A 738 2.04 REMARK 500 NH2 ARG B 129 O HOH B 644 2.04 REMARK 500 O HOH B 531 O HOH B 759 2.05 REMARK 500 CB ALA B 38 O HOH B 852 2.05 REMARK 500 O HOH A 570 O HOH A 634 2.05 REMARK 500 O HOH A 760 O HOH A 785 2.06 REMARK 500 O ARG B 5 O HOH B 775 2.08 REMARK 500 O HOH B 570 O HOH B 605 2.08 REMARK 500 CG ASN B 204 O HOH B 856 2.09 REMARK 500 NH2 ARG B 129 O HOH B 687 2.09 REMARK 500 OE1 GLN A 102 O HOH A 602 2.09 REMARK 500 O LEU B 16 O HOH B 773 2.10 REMARK 500 O HOH B 704 O HOH B 778 2.10 REMARK 500 REMARK 500 THIS ENTRY HAS 72 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 520 O HOH B 558 8554 2.12 REMARK 500 O HOH B 745 O HOH B 827 7555 2.12 REMARK 500 OG1 THR B 7 OG1 THR B 7 7555 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 113 80.03 77.31 REMARK 500 MET A 143 -0.87 -156.48 REMARK 500 TYR A 153 -73.44 -139.61 REMARK 500 ASN A 157 87.29 19.91 REMARK 500 SER A 274 -171.93 -170.71 REMARK 500 ARG B 113 81.50 74.68 REMARK 500 MET B 143 -6.00 -164.73 REMARK 500 TYR B 153 -74.01 -143.34 REMARK 500 ASN B 157 83.07 23.57 REMARK 500 ASP B 254 102.12 -167.18 REMARK 500 PHE B 273 -38.98 -131.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAI A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLV A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAI B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4FJT RELATED DB: PDB REMARK 900 RELATED ID: 4H8A RELATED DB: PDB DBREF 4FJU A 1 349 UNP B1XGB5 B1XGB5_ECODH 1 349 DBREF 4FJU B 1 349 UNP B1XGB5 B1XGB5_ECODH 1 349 SEQADV 4FJU GLY A -1 UNP B1XGB5 EXPRESSION TAG SEQADV 4FJU HIS A 0 UNP B1XGB5 EXPRESSION TAG SEQADV 4FJU GLY B -1 UNP B1XGB5 EXPRESSION TAG SEQADV 4FJU HIS B 0 UNP B1XGB5 EXPRESSION TAG SEQRES 1 A 351 GLY HIS MET LYS ILE SER ARG GLU THR LEU HIS GLN LEU SEQRES 2 A 351 ILE GLU ASN LYS LEU CYS GLN ALA GLY LEU LYS ARG GLU SEQRES 3 A 351 HIS ALA ALA THR VAL ALA GLU VAL LEU VAL TYR ALA ASP SEQRES 4 A 351 ALA ARG GLY ILE HIS SER HIS GLY ALA VAL ARG VAL GLU SEQRES 5 A 351 TYR TYR ALA GLU ARG ILE SER LYS GLY GLY THR ASN ARG SEQRES 6 A 351 GLU PRO GLU PHE ARG LEU GLU GLU THR GLY PRO CYS SER SEQRES 7 A 351 ALA ILE LEU HIS ALA ASP ASN ALA ALA GLY GLN VAL ALA SEQRES 8 A 351 ALA LYS MET GLY MET GLU HIS ALA ILE LYS THR ALA GLN SEQRES 9 A 351 GLN ASN GLY VAL ALA VAL VAL GLY ILE SER ARG MET GLY SEQRES 10 A 351 HIS SER GLY ALA ILE SER TYR PHE VAL GLN GLN ALA ALA SEQRES 11 A 351 ARG ALA GLY PHE ILE GLY ILE SER MET CYS GLN SER ASP SEQRES 12 A 351 PRO MET VAL VAL PRO PHE GLY GLY ALA GLU ILE TYR TYR SEQRES 13 A 351 GLY THR ASN PRO LEU ALA PHE ALA ALA PRO GLY GLU GLY SEQRES 14 A 351 ASP GLU ILE LEU THR PHE ASP MET ALA THR THR VAL GLN SEQRES 15 A 351 ALA TRP GLY LYS VAL LEU ASP ALA ARG SER ARG ASN MET SEQRES 16 A 351 SER ILE PRO ASP THR TRP ALA VAL ASP LYS ASN GLY VAL SEQRES 17 A 351 PRO THR THR ASP PRO PHE ALA VAL HIS ALA LEU LEU PRO SEQRES 18 A 351 ALA ALA GLY PRO LYS GLY TYR GLY LEU MET MET MET ILE SEQRES 19 A 351 ASP VAL LEU SER GLY VAL LEU LEU GLY LEU PRO PHE GLY SEQRES 20 A 351 ARG GLN VAL SER SER MET TYR ASP ASP LEU HIS ALA GLY SEQRES 21 A 351 ARG ASN LEU GLY GLN LEU HIS ILE VAL ILE ASN PRO ASN SEQRES 22 A 351 PHE PHE SER SER SER GLU LEU PHE ARG GLN HIS LEU SER SEQRES 23 A 351 GLN THR MET ARG GLU LEU ASN ALA ILE THR PRO ALA PRO SEQRES 24 A 351 GLY PHE ASN GLN VAL TYR TYR PRO GLY GLN ASP GLN ASP SEQRES 25 A 351 ILE LYS GLN ARG LYS ALA ALA VAL GLU GLY ILE GLU ILE SEQRES 26 A 351 VAL ASP ASP ILE TYR GLN TYR LEU ILE SER ASP ALA LEU SEQRES 27 A 351 TYR ASN THR SER TYR GLU THR LYS ASN PRO PHE ALA GLN SEQRES 1 B 351 GLY HIS MET LYS ILE SER ARG GLU THR LEU HIS GLN LEU SEQRES 2 B 351 ILE GLU ASN LYS LEU CYS GLN ALA GLY LEU LYS ARG GLU SEQRES 3 B 351 HIS ALA ALA THR VAL ALA GLU VAL LEU VAL TYR ALA ASP SEQRES 4 B 351 ALA ARG GLY ILE HIS SER HIS GLY ALA VAL ARG VAL GLU SEQRES 5 B 351 TYR TYR ALA GLU ARG ILE SER LYS GLY GLY THR ASN ARG SEQRES 6 B 351 GLU PRO GLU PHE ARG LEU GLU GLU THR GLY PRO CYS SER SEQRES 7 B 351 ALA ILE LEU HIS ALA ASP ASN ALA ALA GLY GLN VAL ALA SEQRES 8 B 351 ALA LYS MET GLY MET GLU HIS ALA ILE LYS THR ALA GLN SEQRES 9 B 351 GLN ASN GLY VAL ALA VAL VAL GLY ILE SER ARG MET GLY SEQRES 10 B 351 HIS SER GLY ALA ILE SER TYR PHE VAL GLN GLN ALA ALA SEQRES 11 B 351 ARG ALA GLY PHE ILE GLY ILE SER MET CYS GLN SER ASP SEQRES 12 B 351 PRO MET VAL VAL PRO PHE GLY GLY ALA GLU ILE TYR TYR SEQRES 13 B 351 GLY THR ASN PRO LEU ALA PHE ALA ALA PRO GLY GLU GLY SEQRES 14 B 351 ASP GLU ILE LEU THR PHE ASP MET ALA THR THR VAL GLN SEQRES 15 B 351 ALA TRP GLY LYS VAL LEU ASP ALA ARG SER ARG ASN MET SEQRES 16 B 351 SER ILE PRO ASP THR TRP ALA VAL ASP LYS ASN GLY VAL SEQRES 17 B 351 PRO THR THR ASP PRO PHE ALA VAL HIS ALA LEU LEU PRO SEQRES 18 B 351 ALA ALA GLY PRO LYS GLY TYR GLY LEU MET MET MET ILE SEQRES 19 B 351 ASP VAL LEU SER GLY VAL LEU LEU GLY LEU PRO PHE GLY SEQRES 20 B 351 ARG GLN VAL SER SER MET TYR ASP ASP LEU HIS ALA GLY SEQRES 21 B 351 ARG ASN LEU GLY GLN LEU HIS ILE VAL ILE ASN PRO ASN SEQRES 22 B 351 PHE PHE SER SER SER GLU LEU PHE ARG GLN HIS LEU SER SEQRES 23 B 351 GLN THR MET ARG GLU LEU ASN ALA ILE THR PRO ALA PRO SEQRES 24 B 351 GLY PHE ASN GLN VAL TYR TYR PRO GLY GLN ASP GLN ASP SEQRES 25 B 351 ILE LYS GLN ARG LYS ALA ALA VAL GLU GLY ILE GLU ILE SEQRES 26 B 351 VAL ASP ASP ILE TYR GLN TYR LEU ILE SER ASP ALA LEU SEQRES 27 B 351 TYR ASN THR SER TYR GLU THR LYS ASN PRO PHE ALA GLN HET NAI A 401 44 HET GLV A 402 5 HET NAI B 401 44 HETNAM NAI 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE HETNAM GLV GLYOXYLIC ACID HETSYN NAI NADH HETSYN GLV GLYOXALATE; GLYOXYLATE FORMUL 3 NAI 2(C21 H29 N7 O14 P2) FORMUL 4 GLV C2 H2 O3 FORMUL 6 HOH *707(H2 O) HELIX 1 1 SER A 4 GLY A 20 1 17 HELIX 2 2 LYS A 22 GLY A 40 1 19 HELIX 3 3 ILE A 41 VAL A 47 5 7 HELIX 4 4 ARG A 48 LYS A 58 1 11 HELIX 5 5 ALA A 85 GLY A 105 1 21 HELIX 6 6 ILE A 120 ALA A 130 1 11 HELIX 7 7 TRP A 182 ARG A 191 1 10 HELIX 8 8 GLY A 222 GLY A 237 1 16 HELIX 9 9 VAL A 238 GLY A 241 5 4 HELIX 10 10 PHE A 244 VAL A 248 5 5 HELIX 11 11 PRO A 270 PHE A 273 5 4 HELIX 12 12 SER A 275 ALA A 292 1 18 HELIX 13 13 GLY A 306 GLY A 320 1 15 HELIX 14 14 VAL A 324 SER A 333 1 10 HELIX 15 15 ARG B 5 GLY B 20 1 16 HELIX 16 16 LYS B 22 ARG B 39 1 18 HELIX 17 17 ILE B 41 VAL B 47 5 7 HELIX 18 18 ARG B 48 LYS B 58 1 11 HELIX 19 19 ALA B 85 GLY B 105 1 21 HELIX 20 20 ILE B 120 ALA B 130 1 11 HELIX 21 21 TRP B 182 ARG B 191 1 10 HELIX 22 22 GLY B 222 GLY B 237 1 16 HELIX 23 23 VAL B 238 GLY B 241 5 4 HELIX 24 24 PHE B 244 VAL B 248 5 5 HELIX 25 25 PRO B 270 PHE B 273 5 4 HELIX 26 26 SER B 275 ALA B 292 1 18 HELIX 27 27 GLY B 306 LYS B 315 1 10 SHEET 1 A 2 LYS A 2 ILE A 3 0 SHEET 2 A 2 ILE A 321 GLU A 322 -1 O ILE A 321 N ILE A 3 SHEET 1 B 7 ARG A 68 GLY A 73 0 SHEET 2 B 7 SER A 76 HIS A 80 -1 O ILE A 78 N GLU A 70 SHEET 3 B 7 VAL A 106 MET A 114 1 O GLY A 110 N LEU A 79 SHEET 4 B 7 LEU A 261 ILE A 268 -1 O GLN A 263 N ILE A 111 SHEET 5 B 7 ILE A 133 CYS A 138 -1 N ILE A 135 O ILE A 266 SHEET 6 B 7 LEU A 159 PRO A 164 -1 O ALA A 160 N SER A 136 SHEET 7 B 7 ILE A 170 MET A 175 -1 O PHE A 173 N PHE A 161 SHEET 1 C 2 ALA A 200 VAL A 201 0 SHEET 2 C 2 ALA A 216 LEU A 217 -1 O ALA A 216 N VAL A 201 SHEET 1 D 7 ARG B 68 GLY B 73 0 SHEET 2 D 7 SER B 76 ALA B 84 -1 O ILE B 78 N GLU B 70 SHEET 3 D 7 VAL B 106 MET B 114 1 O GLY B 110 N LEU B 79 SHEET 4 D 7 LEU B 261 ILE B 268 -1 O GLN B 263 N ILE B 111 SHEET 5 D 7 ILE B 133 CYS B 138 -1 N ILE B 135 O ILE B 266 SHEET 6 D 7 LEU B 159 PRO B 164 -1 O ALA B 160 N SER B 136 SHEET 7 D 7 ILE B 170 MET B 175 -1 O PHE B 173 N PHE B 161 SHEET 1 E 2 ALA B 200 VAL B 201 0 SHEET 2 E 2 ALA B 216 LEU B 217 -1 O ALA B 216 N VAL B 201 SITE 1 AC1 31 ILE A 41 HIS A 44 HIS A 116 GLY A 118 SITE 2 AC1 31 ILE A 120 SER A 140 THR A 156 PRO A 158 SITE 3 AC1 31 PHE A 173 ASP A 174 MET A 175 ALA A 176 SITE 4 AC1 31 TYR A 303 TYR A 304 GLY A 306 ASP A 308 SITE 5 AC1 31 GLN A 309 GLV A 402 HOH A 519 HOH A 530 SITE 6 AC1 31 HOH A 535 HOH A 539 HOH A 540 HOH A 541 SITE 7 AC1 31 HOH A 549 HOH A 563 HOH A 635 HOH A 748 SITE 8 AC1 31 PHE B 147 PRO B 223 LYS B 224 SITE 1 AC2 7 ARG A 48 HIS A 116 SER A 140 ASP A 141 SITE 2 AC2 7 MET A 251 NAI A 401 HOH A 698 SITE 1 AC3 27 PHE A 147 PRO A 223 LYS A 224 HOH A 517 SITE 2 AC3 27 HOH A 776 HIS B 44 HIS B 116 GLY B 118 SITE 3 AC3 27 ILE B 120 SER B 140 THR B 156 PRO B 158 SITE 4 AC3 27 PHE B 173 ASP B 174 ALA B 176 ALA B 181 SITE 5 AC3 27 TYR B 303 TYR B 304 PRO B 305 GLY B 306 SITE 6 AC3 27 ASP B 308 GLN B 309 HOH B 513 HOH B 536 SITE 7 AC3 27 HOH B 617 HOH B 679 HOH B 819 CRYST1 162.756 162.756 61.453 90.00 90.00 90.00 P 42 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006144 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006144 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016273 0.00000