data_4FSS # _entry.id 4FSS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4FSS pdb_00004fss 10.2210/pdb4fss/pdb RCSB RCSB073310 ? ? WWPDB D_1000073310 ? ? # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id JCSG-422693 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 4FSS _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-06-27 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Joint Center for Structural Genomics (JCSG)' 1 'Partnership for T-Cell Biology (TCELL)' 2 # _citation.id primary _citation.title 'Crystal structure of a RAS p21 protein activator (RASA1) from Homo sapiens at 2.25 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Joint Center for Structural Genomics (JCSG)' 1 ? primary 'Partnership for T-Cell Biology (TCELL)' 2 ? # _cell.entry_id 4FSS _cell.length_a 82.220 _cell.length_b 82.220 _cell.length_c 157.212 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 36 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4FSS _symmetry.Int_Tables_number 178 _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Ras GTPase-activating protein 1' 7362.018 3 ? ? 'SH3 domain residues 281-341' ? 2 non-polymer syn 'PHOSPHATE ION' 94.971 1 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 3 ? ? ? ? 4 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 5 water nat water 18.015 71 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'GAP, GTPase-activating protein, RasGAP, Ras p21 protein activator, p120GAP' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'GRRRVRAILPYTKVPDTDEISFLKGD(MSE)FIVHNELEDGW(MSE)WVTNLRTDEQGLIVEDLVEEVGR' _entity_poly.pdbx_seq_one_letter_code_can GRRRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEVGR _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier JCSG-422693 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ARG n 1 3 ARG n 1 4 ARG n 1 5 VAL n 1 6 ARG n 1 7 ALA n 1 8 ILE n 1 9 LEU n 1 10 PRO n 1 11 TYR n 1 12 THR n 1 13 LYS n 1 14 VAL n 1 15 PRO n 1 16 ASP n 1 17 THR n 1 18 ASP n 1 19 GLU n 1 20 ILE n 1 21 SER n 1 22 PHE n 1 23 LEU n 1 24 LYS n 1 25 GLY n 1 26 ASP n 1 27 MSE n 1 28 PHE n 1 29 ILE n 1 30 VAL n 1 31 HIS n 1 32 ASN n 1 33 GLU n 1 34 LEU n 1 35 GLU n 1 36 ASP n 1 37 GLY n 1 38 TRP n 1 39 MSE n 1 40 TRP n 1 41 VAL n 1 42 THR n 1 43 ASN n 1 44 LEU n 1 45 ARG n 1 46 THR n 1 47 ASP n 1 48 GLU n 1 49 GLN n 1 50 GLY n 1 51 LEU n 1 52 ILE n 1 53 VAL n 1 54 GLU n 1 55 ASP n 1 56 LEU n 1 57 VAL n 1 58 GLU n 1 59 GLU n 1 60 VAL n 1 61 GLY n 1 62 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'BC033015, RASA, RASA1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RASA1_HUMAN _struct_ref.pdbx_db_accession P20936 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code RRRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEVGR _struct_ref.pdbx_align_begin 281 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4FSS A 2 ? 62 ? P20936 281 ? 341 ? 281 341 2 1 4FSS B 2 ? 62 ? P20936 281 ? 341 ? 281 341 3 1 4FSS C 2 ? 62 ? P20936 281 ? 341 ? 281 341 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4FSS GLY A 1 ? UNP P20936 ? ? 'expression tag' 0 1 2 4FSS GLY B 1 ? UNP P20936 ? ? 'expression tag' 0 2 3 4FSS GLY C 1 ? UNP P20936 ? ? 'expression tag' 0 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 4FSS # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 3.47 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 64.58 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '20.00% Glycerol, 1.600M NH4H2PO4, 0.1M TRIS pH 8.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.details 'Flat mirror (vertical focusing), single crystal Si(111) bent monochromator (horizontal focusing)' _diffrn_detector.pdbx_collection_date 2012-02-08 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'single crystal Si(111) bent' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91837 1.0 2 0.97968 1.0 3 0.97901 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_wavelength_list 0.91837,0.97968,0.97901 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 4FSS _reflns.d_resolution_high 2.25 _reflns.d_resolution_low 29.449 _reflns.number_obs 15649 _reflns.pdbx_Rmerge_I_obs 0.223 _reflns.pdbx_netI_over_sigmaI 7.780 _reflns.percent_possible_obs 99.700 _reflns.B_iso_Wilson_estimate 36.791 _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.250 2.330 19496 ? 2784 0.015 1.4 ? ? ? ? ? 98.600 1 1 2.330 2.420 19606 ? 2758 0.015 1.9 ? ? ? ? ? 99.800 2 1 2.420 2.530 19615 ? 2810 0.015 2.2 ? ? ? ? ? 99.900 3 1 2.530 2.670 18684 ? 2959 0.015 2.6 ? ? ? ? ? 100.000 4 1 2.670 2.830 20189 ? 2728 0.015 3.7 ? ? ? ? ? 100.000 5 1 2.830 3.050 20944 ? 2852 0.015 5.2 ? ? ? ? ? 99.900 6 1 3.050 3.360 20646 ? 2860 0.015 8.4 ? ? ? ? ? 99.900 7 1 3.360 3.840 18762 ? 2807 0.015 12.5 ? ? ? ? ? 100.000 8 1 3.840 4.830 20626 ? 2847 0.015 20.9 ? ? ? ? ? 99.900 9 1 4.830 29.449 20344 ? 2869 0.015 18.7 ? ? ? ? ? 99.300 10 1 # _refine.entry_id 4FSS _refine.ls_d_res_high 2.2500 _refine.ls_d_res_low 29.449 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs ? _refine.ls_number_reflns_obs 15582 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1). A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 2). PHOSPHATE (PO4) FROM THE CRYSTALLIZATION BUFFER GLYCEROL (GOL), USED AS A CRYOPROTECTANT, AND CHLORIDE (CL) FROM THE PROTEIN BUFFER HAVE BEEN MODELED INTO THE STRUCTURE. 3). ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 4). NCS RESTRAINTS WERE APPLIED USING BUSTER LSSR RESTRAINT REPRESENTATION (-AUTONCS). 5). THE REFINEMENT WAS RESTRAINED AGAINST THE MAD PHASES. 6). UNEXPLAINED DIFFERENCE ELECTRON DENSITY IN THE VICINITY OF LEU 288 ON THE C SUBUNIT COULD NOT BE RELIABLY MODELED. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2144 _refine.ls_R_factor_R_work 0.2133 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2374 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.0100 _refine.ls_number_reflns_R_free 780 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 36.4620 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -2.1845 _refine.aniso_B[2][2] -2.1845 _refine.aniso_B[3][3] 4.3691 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9241 _refine.correlation_coeff_Fo_to_Fc_free 0.9078 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.solvent_model_details ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 101.870 _refine.B_iso_min 17.140 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.370 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1499 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 14 _refine_hist.number_atoms_solvent 71 _refine_hist.number_atoms_total 1584 _refine_hist.d_res_high 2.2500 _refine_hist.d_res_low 29.449 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id t_dihedral_angle_d 740 ? ? 2.000 SINUSOIDAL 'X-RAY DIFFRACTION' t_trig_c_planes 49 ? ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_gen_planes 220 ? ? 5.000 HARMONIC 'X-RAY DIFFRACTION' t_it 1555 ? ? 20.000 HARMONIC 'X-RAY DIFFRACTION' t_nbd 0 ? ? 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_improper_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_pseud_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_chiral_improper_torsion 197 ? ? 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_sum_occupancies ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_distance ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_ideal_dist_contact 1831 ? ? 4.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_bond_d 1555 0.010 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_angle_deg 2111 1.120 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_omega_torsion ? 4.550 ? ? ? 'X-RAY DIFFRACTION' t_other_torsion ? 2.690 ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 2.2500 _refine_ls_shell.d_res_low 2.4000 _refine_ls_shell.pdbx_total_number_of_bins_used 8 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.number_reflns_R_work 2596 _refine_ls_shell.R_factor_all 0.2083 _refine_ls_shell.R_factor_R_work 0.2056 _refine_ls_shell.R_factor_R_free 0.2588 _refine_ls_shell.percent_reflns_R_free 5.1200 _refine_ls_shell.number_reflns_R_free 140 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2736 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4FSS _struct.title 'Crystal structure of a RAS p21 protein activator (RASA1) from Homo sapiens at 2.25 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;GTPase activating protein, SH3 domain, RAS signaling pathway, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, SIGNALING PROTEIN, Partnership for T-Cell Biology, TCELL ; _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' _struct_keywords.entry_id 4FSS # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 4 ? I N N 5 ? J N N 5 ? K N N 5 ? # _struct_biol.id 1 _struct_biol.details 'CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A MONOMER AS THE SIGNIFICANT OLIGOMERIZATION STATE.' # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ASP 26 C ? ? ? 1_555 A MSE 27 N ? ? A ASP 305 A MSE 306 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale2 covale both ? A MSE 27 C ? ? ? 1_555 A PHE 28 N ? ? A MSE 306 A PHE 307 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale3 covale both ? A TRP 38 C ? ? ? 1_555 A MSE 39 N ? ? A TRP 317 A MSE 318 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale4 covale both ? A MSE 39 C ? ? ? 1_555 A TRP 40 N ? ? A MSE 318 A TRP 319 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale5 covale both ? B ASP 26 C ? ? ? 1_555 B MSE 27 N ? ? B ASP 305 B MSE 306 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale6 covale both ? B MSE 27 C ? ? ? 1_555 B PHE 28 N ? ? B MSE 306 B PHE 307 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale7 covale both ? B TRP 38 C ? ? ? 1_555 B MSE 39 N ? ? B TRP 317 B MSE 318 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale8 covale both ? B MSE 39 C ? ? ? 1_555 B TRP 40 N ? ? B MSE 318 B TRP 319 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale9 covale both ? C ASP 26 C ? ? ? 1_555 C MSE 27 N ? ? C ASP 305 C MSE 306 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale10 covale both ? C MSE 27 C ? ? ? 1_555 C PHE 28 N ? ? C MSE 306 C PHE 307 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale11 covale both ? C TRP 38 C ? ? ? 1_555 C MSE 39 N ? ? C TRP 317 C MSE 318 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale12 covale both ? C MSE 39 C ? ? ? 1_555 C TRP 40 N ? ? C MSE 318 C TRP 319 1_555 ? ? ? ? ? ? ? 1.331 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 5 ? C ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 49 ? VAL A 53 ? GLN A 328 VAL A 332 A 2 TRP A 38 ? ASN A 43 ? TRP A 317 ASN A 322 A 3 MSE A 27 ? GLU A 33 ? MSE A 306 GLU A 312 A 4 ARG A 3 ? ALA A 7 ? ARG A 282 ALA A 286 A 5 VAL A 57 ? GLU A 59 ? VAL A 336 GLU A 338 B 1 GLN B 49 ? VAL B 53 ? GLN B 328 VAL B 332 B 2 TRP B 38 ? ASN B 43 ? TRP B 317 ASN B 322 B 3 MSE B 27 ? GLU B 33 ? MSE B 306 GLU B 312 B 4 ARG B 4 ? ALA B 7 ? ARG B 283 ALA B 286 B 5 VAL B 57 ? GLU B 59 ? VAL B 336 GLU B 338 C 1 GLU C 48 ? VAL C 53 ? GLU C 327 VAL C 332 C 2 TRP C 38 ? ASN C 43 ? TRP C 317 ASN C 322 C 3 MSE C 27 ? GLU C 33 ? MSE C 306 GLU C 312 C 4 ARG C 4 ? ALA C 7 ? ARG C 283 ALA C 286 C 5 VAL C 57 ? VAL C 60 ? VAL C 336 VAL C 339 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ILE A 52 ? O ILE A 331 N MSE A 39 ? N MSE A 318 A 2 3 O TRP A 40 ? O TRP A 319 N HIS A 31 ? N HIS A 310 A 3 4 O VAL A 30 ? O VAL A 309 N ARG A 3 ? N ARG A 282 A 4 5 N ARG A 6 ? N ARG A 285 O GLU A 58 ? O GLU A 337 B 1 2 O ILE B 52 ? O ILE B 331 N MSE B 39 ? N MSE B 318 B 2 3 O TRP B 40 ? O TRP B 319 N HIS B 31 ? N HIS B 310 B 3 4 O PHE B 28 ? O PHE B 307 N VAL B 5 ? N VAL B 284 B 4 5 N ARG B 6 ? N ARG B 285 O GLU B 58 ? O GLU B 337 C 1 2 O ILE C 52 ? O ILE C 331 N MSE C 39 ? N MSE C 318 C 2 3 O TRP C 40 ? O TRP C 319 N HIS C 31 ? N HIS C 310 C 3 4 O PHE C 28 ? O PHE C 307 N VAL C 5 ? N VAL C 284 C 4 5 N ARG C 4 ? N ARG C 283 O VAL C 60 ? O VAL C 339 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A PO4 1001 ? 3 'BINDING SITE FOR RESIDUE PO4 A 1001' AC2 Software A CL 1002 ? 2 'BINDING SITE FOR RESIDUE CL A 1002' AC3 Software B CL 401 ? 1 'BINDING SITE FOR RESIDUE CL B 401' AC4 Software C CL 401 ? 1 'BINDING SITE FOR RESIDUE CL C 401' AC5 Software C GOL 402 ? 6 'BINDING SITE FOR RESIDUE GOL C 402' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 ARG A 2 ? ARG A 281 . ? 1_555 ? 2 AC1 3 HIS A 31 ? HIS A 310 . ? 1_555 ? 3 AC1 3 ASP C 47 ? ASP C 326 . ? 6_555 ? 4 AC2 2 LYS A 13 ? LYS A 292 . ? 1_555 ? 5 AC2 2 ASP A 16 ? ASP A 295 . ? 1_555 ? 6 AC3 1 ARG B 2 ? ARG B 281 . ? 1_555 ? 7 AC4 1 ASP C 16 ? ASP C 295 . ? 1_555 ? 8 AC5 6 ARG B 6 ? ARG B 285 . ? 5_554 ? 9 AC5 6 VAL B 60 ? VAL B 339 . ? 5_554 ? 10 AC5 6 GLY B 61 ? GLY B 340 . ? 5_554 ? 11 AC5 6 ARG B 62 ? ARG B 341 . ? 5_554 ? 12 AC5 6 LYS C 13 ? LYS C 292 . ? 1_555 ? 13 AC5 6 GLU C 48 ? GLU C 327 . ? 1_555 ? # _atom_sites.entry_id 4FSS _atom_sites.fract_transf_matrix[1][1] 0.012162 _atom_sites.fract_transf_matrix[1][2] 0.007022 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014044 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006361 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O P SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 ARG 2 281 281 ARG ARG A . n A 1 3 ARG 3 282 282 ARG ARG A . n A 1 4 ARG 4 283 283 ARG ARG A . n A 1 5 VAL 5 284 284 VAL VAL A . n A 1 6 ARG 6 285 285 ARG ARG A . n A 1 7 ALA 7 286 286 ALA ALA A . n A 1 8 ILE 8 287 287 ILE ILE A . n A 1 9 LEU 9 288 288 LEU LEU A . n A 1 10 PRO 10 289 289 PRO PRO A . n A 1 11 TYR 11 290 290 TYR TYR A . n A 1 12 THR 12 291 291 THR THR A . n A 1 13 LYS 13 292 292 LYS LYS A . n A 1 14 VAL 14 293 293 VAL VAL A . n A 1 15 PRO 15 294 294 PRO PRO A . n A 1 16 ASP 16 295 295 ASP ASP A . n A 1 17 THR 17 296 296 THR THR A . n A 1 18 ASP 18 297 297 ASP ASP A . n A 1 19 GLU 19 298 298 GLU GLU A . n A 1 20 ILE 20 299 299 ILE ILE A . n A 1 21 SER 21 300 300 SER SER A . n A 1 22 PHE 22 301 301 PHE PHE A . n A 1 23 LEU 23 302 302 LEU LEU A . n A 1 24 LYS 24 303 303 LYS LYS A . n A 1 25 GLY 25 304 304 GLY GLY A . n A 1 26 ASP 26 305 305 ASP ASP A . n A 1 27 MSE 27 306 306 MSE MSE A . n A 1 28 PHE 28 307 307 PHE PHE A . n A 1 29 ILE 29 308 308 ILE ILE A . n A 1 30 VAL 30 309 309 VAL VAL A . n A 1 31 HIS 31 310 310 HIS HIS A . n A 1 32 ASN 32 311 311 ASN ASN A . n A 1 33 GLU 33 312 312 GLU GLU A . n A 1 34 LEU 34 313 313 LEU LEU A . n A 1 35 GLU 35 314 314 GLU GLU A . n A 1 36 ASP 36 315 315 ASP ASP A . n A 1 37 GLY 37 316 316 GLY GLY A . n A 1 38 TRP 38 317 317 TRP TRP A . n A 1 39 MSE 39 318 318 MSE MSE A . n A 1 40 TRP 40 319 319 TRP TRP A . n A 1 41 VAL 41 320 320 VAL VAL A . n A 1 42 THR 42 321 321 THR THR A . n A 1 43 ASN 43 322 322 ASN ASN A . n A 1 44 LEU 44 323 323 LEU LEU A . n A 1 45 ARG 45 324 324 ARG ARG A . n A 1 46 THR 46 325 325 THR THR A . n A 1 47 ASP 47 326 326 ASP ASP A . n A 1 48 GLU 48 327 327 GLU GLU A . n A 1 49 GLN 49 328 328 GLN GLN A . n A 1 50 GLY 50 329 329 GLY GLY A . n A 1 51 LEU 51 330 330 LEU LEU A . n A 1 52 ILE 52 331 331 ILE ILE A . n A 1 53 VAL 53 332 332 VAL VAL A . n A 1 54 GLU 54 333 333 GLU GLU A . n A 1 55 ASP 55 334 334 ASP ASP A . n A 1 56 LEU 56 335 335 LEU LEU A . n A 1 57 VAL 57 336 336 VAL VAL A . n A 1 58 GLU 58 337 337 GLU GLU A . n A 1 59 GLU 59 338 338 GLU GLU A . n A 1 60 VAL 60 339 339 VAL VAL A . n A 1 61 GLY 61 340 340 GLY GLY A . n A 1 62 ARG 62 341 ? ? ? A . n B 1 1 GLY 1 0 ? ? ? B . n B 1 2 ARG 2 281 281 ARG ARG B . n B 1 3 ARG 3 282 282 ARG ARG B . n B 1 4 ARG 4 283 283 ARG ARG B . n B 1 5 VAL 5 284 284 VAL VAL B . n B 1 6 ARG 6 285 285 ARG ARG B . n B 1 7 ALA 7 286 286 ALA ALA B . n B 1 8 ILE 8 287 287 ILE ILE B . n B 1 9 LEU 9 288 288 LEU LEU B . n B 1 10 PRO 10 289 289 PRO PRO B . n B 1 11 TYR 11 290 290 TYR TYR B . n B 1 12 THR 12 291 291 THR THR B . n B 1 13 LYS 13 292 292 LYS LYS B . n B 1 14 VAL 14 293 293 VAL VAL B . n B 1 15 PRO 15 294 294 PRO PRO B . n B 1 16 ASP 16 295 295 ASP ASP B . n B 1 17 THR 17 296 296 THR THR B . n B 1 18 ASP 18 297 297 ASP ASP B . n B 1 19 GLU 19 298 298 GLU GLU B . n B 1 20 ILE 20 299 299 ILE ILE B . n B 1 21 SER 21 300 300 SER SER B . n B 1 22 PHE 22 301 301 PHE PHE B . n B 1 23 LEU 23 302 302 LEU LEU B . n B 1 24 LYS 24 303 303 LYS LYS B . n B 1 25 GLY 25 304 304 GLY GLY B . n B 1 26 ASP 26 305 305 ASP ASP B . n B 1 27 MSE 27 306 306 MSE MSE B . n B 1 28 PHE 28 307 307 PHE PHE B . n B 1 29 ILE 29 308 308 ILE ILE B . n B 1 30 VAL 30 309 309 VAL VAL B . n B 1 31 HIS 31 310 310 HIS HIS B . n B 1 32 ASN 32 311 311 ASN ASN B . n B 1 33 GLU 33 312 312 GLU GLU B . n B 1 34 LEU 34 313 313 LEU LEU B . n B 1 35 GLU 35 314 314 GLU GLU B . n B 1 36 ASP 36 315 315 ASP ASP B . n B 1 37 GLY 37 316 316 GLY GLY B . n B 1 38 TRP 38 317 317 TRP TRP B . n B 1 39 MSE 39 318 318 MSE MSE B . n B 1 40 TRP 40 319 319 TRP TRP B . n B 1 41 VAL 41 320 320 VAL VAL B . n B 1 42 THR 42 321 321 THR THR B . n B 1 43 ASN 43 322 322 ASN ASN B . n B 1 44 LEU 44 323 323 LEU LEU B . n B 1 45 ARG 45 324 324 ARG ARG B . n B 1 46 THR 46 325 325 THR THR B . n B 1 47 ASP 47 326 326 ASP ASP B . n B 1 48 GLU 48 327 327 GLU GLU B . n B 1 49 GLN 49 328 328 GLN GLN B . n B 1 50 GLY 50 329 329 GLY GLY B . n B 1 51 LEU 51 330 330 LEU LEU B . n B 1 52 ILE 52 331 331 ILE ILE B . n B 1 53 VAL 53 332 332 VAL VAL B . n B 1 54 GLU 54 333 333 GLU GLU B . n B 1 55 ASP 55 334 334 ASP ASP B . n B 1 56 LEU 56 335 335 LEU LEU B . n B 1 57 VAL 57 336 336 VAL VAL B . n B 1 58 GLU 58 337 337 GLU GLU B . n B 1 59 GLU 59 338 338 GLU GLU B . n B 1 60 VAL 60 339 339 VAL VAL B . n B 1 61 GLY 61 340 340 GLY GLY B . n B 1 62 ARG 62 341 341 ARG ARG B . n C 1 1 GLY 1 0 ? ? ? C . n C 1 2 ARG 2 281 281 ARG ARG C . n C 1 3 ARG 3 282 282 ARG ARG C . n C 1 4 ARG 4 283 283 ARG ARG C . n C 1 5 VAL 5 284 284 VAL VAL C . n C 1 6 ARG 6 285 285 ARG ARG C . n C 1 7 ALA 7 286 286 ALA ALA C . n C 1 8 ILE 8 287 287 ILE ILE C . n C 1 9 LEU 9 288 288 LEU LEU C . n C 1 10 PRO 10 289 289 PRO PRO C . n C 1 11 TYR 11 290 290 TYR TYR C . n C 1 12 THR 12 291 291 THR THR C . n C 1 13 LYS 13 292 292 LYS LYS C . n C 1 14 VAL 14 293 293 VAL VAL C . n C 1 15 PRO 15 294 294 PRO PRO C . n C 1 16 ASP 16 295 295 ASP ASP C . n C 1 17 THR 17 296 296 THR THR C . n C 1 18 ASP 18 297 297 ASP ASP C . n C 1 19 GLU 19 298 298 GLU GLU C . n C 1 20 ILE 20 299 299 ILE ILE C . n C 1 21 SER 21 300 300 SER SER C . n C 1 22 PHE 22 301 301 PHE PHE C . n C 1 23 LEU 23 302 302 LEU LEU C . n C 1 24 LYS 24 303 303 LYS LYS C . n C 1 25 GLY 25 304 304 GLY GLY C . n C 1 26 ASP 26 305 305 ASP ASP C . n C 1 27 MSE 27 306 306 MSE MSE C . n C 1 28 PHE 28 307 307 PHE PHE C . n C 1 29 ILE 29 308 308 ILE ILE C . n C 1 30 VAL 30 309 309 VAL VAL C . n C 1 31 HIS 31 310 310 HIS HIS C . n C 1 32 ASN 32 311 311 ASN ASN C . n C 1 33 GLU 33 312 312 GLU GLU C . n C 1 34 LEU 34 313 313 LEU LEU C . n C 1 35 GLU 35 314 314 GLU GLU C . n C 1 36 ASP 36 315 315 ASP ASP C . n C 1 37 GLY 37 316 316 GLY GLY C . n C 1 38 TRP 38 317 317 TRP TRP C . n C 1 39 MSE 39 318 318 MSE MSE C . n C 1 40 TRP 40 319 319 TRP TRP C . n C 1 41 VAL 41 320 320 VAL VAL C . n C 1 42 THR 42 321 321 THR THR C . n C 1 43 ASN 43 322 322 ASN ASN C . n C 1 44 LEU 44 323 323 LEU LEU C . n C 1 45 ARG 45 324 324 ARG ARG C . n C 1 46 THR 46 325 325 THR THR C . n C 1 47 ASP 47 326 326 ASP ASP C . n C 1 48 GLU 48 327 327 GLU GLU C . n C 1 49 GLN 49 328 328 GLN GLN C . n C 1 50 GLY 50 329 329 GLY GLY C . n C 1 51 LEU 51 330 330 LEU LEU C . n C 1 52 ILE 52 331 331 ILE ILE C . n C 1 53 VAL 53 332 332 VAL VAL C . n C 1 54 GLU 54 333 333 GLU GLU C . n C 1 55 ASP 55 334 334 ASP ASP C . n C 1 56 LEU 56 335 335 LEU LEU C . n C 1 57 VAL 57 336 336 VAL VAL C . n C 1 58 GLU 58 337 337 GLU GLU C . n C 1 59 GLU 59 338 338 GLU GLU C . n C 1 60 VAL 60 339 339 VAL VAL C . n C 1 61 GLY 61 340 340 GLY GLY C . n C 1 62 ARG 62 341 341 ARG ARG C . n # loop_ _pdbx_SG_project.project_name _pdbx_SG_project.full_name_of_center _pdbx_SG_project.id _pdbx_SG_project.initial_of_center PSI:Biology 'Joint Center for Structural Genomics' 1 JCSG PSI:Biology 'Partnership for T-Cell Biology' 2 TCELL # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 PO4 1 1001 1001 PO4 PO4 A . E 3 CL 1 1002 1002 CL CL A . F 3 CL 1 401 1003 CL CL B . G 3 CL 1 401 1004 CL CL C . H 4 GOL 1 402 1005 GOL GOL C . I 5 HOH 1 1101 1008 HOH HOH A . I 5 HOH 2 1102 1011 HOH HOH A . I 5 HOH 3 1103 1014 HOH HOH A . I 5 HOH 4 1104 1020 HOH HOH A . I 5 HOH 5 1105 1022 HOH HOH A . I 5 HOH 6 1106 1024 HOH HOH A . I 5 HOH 7 1107 1026 HOH HOH A . I 5 HOH 8 1108 1027 HOH HOH A . I 5 HOH 9 1109 1028 HOH HOH A . I 5 HOH 10 1110 1032 HOH HOH A . I 5 HOH 11 1111 1036 HOH HOH A . I 5 HOH 12 1112 1037 HOH HOH A . I 5 HOH 13 1113 1038 HOH HOH A . I 5 HOH 14 1114 1040 HOH HOH A . I 5 HOH 15 1115 1041 HOH HOH A . I 5 HOH 16 1116 1042 HOH HOH A . I 5 HOH 17 1117 1054 HOH HOH A . I 5 HOH 18 1118 1055 HOH HOH A . I 5 HOH 19 1119 1056 HOH HOH A . I 5 HOH 20 1120 1057 HOH HOH A . I 5 HOH 21 1121 1058 HOH HOH A . I 5 HOH 22 1122 1059 HOH HOH A . I 5 HOH 23 1123 1066 HOH HOH A . I 5 HOH 24 1124 1067 HOH HOH A . I 5 HOH 25 1125 1068 HOH HOH A . I 5 HOH 26 1126 1069 HOH HOH A . I 5 HOH 27 1127 1074 HOH HOH A . J 5 HOH 1 501 1006 HOH HOH B . J 5 HOH 2 502 1007 HOH HOH B . J 5 HOH 3 503 1013 HOH HOH B . J 5 HOH 4 504 1025 HOH HOH B . J 5 HOH 5 505 1029 HOH HOH B . J 5 HOH 6 506 1030 HOH HOH B . J 5 HOH 7 507 1035 HOH HOH B . J 5 HOH 8 508 1039 HOH HOH B . J 5 HOH 9 509 1043 HOH HOH B . J 5 HOH 10 510 1044 HOH HOH B . J 5 HOH 11 511 1045 HOH HOH B . J 5 HOH 12 512 1046 HOH HOH B . J 5 HOH 13 513 1047 HOH HOH B . J 5 HOH 14 514 1048 HOH HOH B . J 5 HOH 15 515 1060 HOH HOH B . J 5 HOH 16 516 1061 HOH HOH B . J 5 HOH 17 517 1062 HOH HOH B . J 5 HOH 18 518 1063 HOH HOH B . J 5 HOH 19 519 1064 HOH HOH B . J 5 HOH 20 520 1070 HOH HOH B . J 5 HOH 21 521 1071 HOH HOH B . J 5 HOH 22 522 1072 HOH HOH B . J 5 HOH 23 523 1073 HOH HOH B . K 5 HOH 1 501 1009 HOH HOH C . K 5 HOH 2 502 1010 HOH HOH C . K 5 HOH 3 503 1012 HOH HOH C . K 5 HOH 4 504 1015 HOH HOH C . K 5 HOH 5 505 1016 HOH HOH C . K 5 HOH 6 506 1017 HOH HOH C . K 5 HOH 7 507 1018 HOH HOH C . K 5 HOH 8 508 1019 HOH HOH C . K 5 HOH 9 509 1021 HOH HOH C . K 5 HOH 10 510 1023 HOH HOH C . K 5 HOH 11 511 1031 HOH HOH C . K 5 HOH 12 512 1033 HOH HOH C . K 5 HOH 13 513 1034 HOH HOH C . K 5 HOH 14 514 1049 HOH HOH C . K 5 HOH 15 515 1050 HOH HOH C . K 5 HOH 16 516 1051 HOH HOH C . K 5 HOH 17 517 1052 HOH HOH C . K 5 HOH 18 518 1053 HOH HOH C . K 5 HOH 19 519 1065 HOH HOH C . K 5 HOH 20 520 1075 HOH HOH C . K 5 HOH 21 521 1076 HOH HOH C . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 27 A MSE 306 ? MET SELENOMETHIONINE 2 A MSE 39 A MSE 318 ? MET SELENOMETHIONINE 3 B MSE 27 B MSE 306 ? MET SELENOMETHIONINE 4 B MSE 39 B MSE 318 ? MET SELENOMETHIONINE 5 C MSE 27 C MSE 306 ? MET SELENOMETHIONINE 6 C MSE 39 C MSE 318 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 3 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,D,E,I 2 1 B,F,J 3 1 C,G,H,K # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-07-18 2 'Structure model' 1 1 2015-10-21 3 'Structure model' 1 2 2017-11-15 4 'Structure model' 1 3 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' 'Structure summary' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' database_2 3 4 'Structure model' struct_conn 4 4 'Structure model' struct_ref_seq_dif 5 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_ref_seq_dif.details' 5 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 25.5162 15.2207 1.3069 0.0102 -0.0061 -0.1130 -0.0030 -0.0013 -0.0022 1.6756 1.7782 3.8897 -0.4820 -0.7547 0.7497 0.0010 -0.0949 0.0939 0.0773 -0.0481 0.0979 -0.1248 0.0770 -0.3524 'X-RAY DIFFRACTION' 2 ? refined 38.4407 33.2605 -3.5318 -0.0327 0.0158 -0.1303 -0.0211 0.0201 0.0352 3.2074 1.7389 4.2540 0.3738 -1.9013 -0.3997 -0.0012 -0.0735 0.0747 -0.2545 0.1933 0.0254 0.1096 -0.1186 0.4720 'X-RAY DIFFRACTION' 3 ? refined 39.0213 0.3943 -11.5248 -0.0032 -0.0395 -0.1201 -0.0185 0.0128 0.0203 2.1432 2.6935 5.3017 -0.2203 -1.5276 0.3350 -0.0928 -0.0010 0.0938 0.1836 0.0275 -0.0876 -0.1003 -0.0723 0.1798 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 281 A 340 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 B 281 B 341 ? . . . . ? 'X-RAY DIFFRACTION' 3 3 C 281 C 341 ? . . . . ? # _phasing.method MAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 4 SHARP . ? package 'Eric de La Fortelle' sharp-develop@globalphasing.com phasing http://www.globalphasing.com/sharp/ ? ? 5 XSCALE 'December 29, 2011' ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 6 BUSTER-TNT 2.8.0 ? program 'Gerard Bricogne' buster-develop@GlobalPhasing.com refinement http://www.globalphasing.com/buster/ ? ? 7 XDS . ? ? ? ? 'data reduction' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? 9 BUSTER 2.8.0 ? ? ? ? refinement ? ? ? # _pdbx_entry_details.entry_id 4FSS _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 281-341 OF THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B GLU 327 ? CG ? B GLU 48 CG 2 1 Y 1 B GLU 327 ? CD ? B GLU 48 CD 3 1 Y 1 B GLU 327 ? OE1 ? B GLU 48 OE1 4 1 Y 1 B GLU 327 ? OE2 ? B GLU 48 OE2 5 1 Y 1 C ARG 341 ? CG ? C ARG 62 CG 6 1 Y 1 C ARG 341 ? CD ? C ARG 62 CD 7 1 Y 1 C ARG 341 ? NE ? C ARG 62 NE 8 1 Y 1 C ARG 341 ? CZ ? C ARG 62 CZ 9 1 Y 1 C ARG 341 ? NH1 ? C ARG 62 NH1 10 1 Y 1 C ARG 341 ? NH2 ? C ARG 62 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A ARG 341 ? A ARG 62 3 1 Y 1 B GLY 0 ? B GLY 1 4 1 Y 1 C GLY 0 ? C GLY 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'PHOSPHATE ION' PO4 3 'CHLORIDE ION' CL 4 GLYCEROL GOL 5 water HOH #